From af2bcb5248b8c53374f7a22f57495f89c77542a5 Mon Sep 17 00:00:00 2001
From: tpylak <tpylak>
Date: Tue, 17 Aug 2010 11:06:30 +0000
Subject: [PATCH] LMS-1645 minor refactoring: ImageChannelStachReference ->
WellImageChannelStack
SVN: 17478
---
.../web/client/IScreeningClientService.java | 4 +-
.../client/IScreeningClientServiceAsync.java | 4 +-
.../detailviewers/ImageUrlUtils.java | 6 +--
.../detailviewers/PlateMaterialReviewer.java | 5 ++-
.../detailviewers/WellContentDialog.java | 8 ++--
.../WellContentTimepointsViewer.java | 40 +++++++++----------
.../web/server/ScreeningClientService.java | 4 +-
.../screening/server/ScreeningServer.java | 4 +-
.../server/ScreeningServerLogger.java | 4 +-
.../server/logic/PlateContentLoader.java | 6 +--
.../screening/shared/IScreeningServer.java | 4 +-
...erence.java => WellImageChannelStack.java} | 10 ++---
.../shared/imaging/HCSDatasetLoader.java | 12 +++---
.../shared/imaging/IHCSDatasetLoader.java | 4 +-
14 files changed, 59 insertions(+), 56 deletions(-)
rename screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/{ImageChannelStackReference.java => WellImageChannelStack.java} (87%)
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientService.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientService.java
index b480205be9e..0c1fa31e4b6 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientService.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientService.java
@@ -31,7 +31,7 @@ import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.GenericTableRow;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.SampleParentWithDerived;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Vocabulary;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.LibraryRegistrationInfo;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages;
@@ -103,7 +103,7 @@ public interface IScreeningClientService extends IClientService
throws UserFailureException;
/** Lists all images for a given well in the given dataset */
- public List<ImageChannelStackReference> listImageChannelStacks(String datasetCode,
+ public List<WellImageChannelStack> listImageChannelStacks(String datasetCode,
String datastoreCode, WellLocation wellLocation);
/**
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientServiceAsync.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientServiceAsync.java
index ced06948de7..1c7f95116cc 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientServiceAsync.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/IScreeningClientServiceAsync.java
@@ -31,7 +31,7 @@ import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.GenericTableRow;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.SampleParentWithDerived;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Vocabulary;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.LibraryRegistrationInfo;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages;
@@ -92,7 +92,7 @@ public interface IScreeningClientServiceAsync extends IClientServiceAsync
*/
public void listImageChannelStacks(String datasetCode, String datastoreCode,
WellLocation wellLocation,
- AsyncCallback<List<ImageChannelStackReference>> abstractAsyncCallback);
+ AsyncCallback<List<WellImageChannelStack>> abstractAsyncCallback);
/**
* @see IScreeningClientService#registerLibrary(LibraryRegistrationInfo)
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/ImageUrlUtils.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/ImageUrlUtils.java
index 199e3682f3f..20ec6292c87 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/ImageUrlUtils.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/ImageUrlUtils.java
@@ -22,7 +22,7 @@ import com.extjs.gxt.ui.client.widget.LayoutContainer;
import ch.systemsx.cisd.openbis.generic.client.web.client.application.ui.columns.framework.renderers.SimpleImageHtmlRenderer;
import ch.systemsx.cisd.openbis.generic.shared.basic.URLMethodWithParameters;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ScreeningConstants;
/**
@@ -50,7 +50,7 @@ public class ImageUrlUtils
* container.
*/
public static void addImageUrlWidget(LayoutContainer container, String sessionId,
- WellImages images, String channel, ImageChannelStackReference channelStackRef,
+ WellImages images, String channel, WellImageChannelStack channelStackRef,
int imageWidth, int imageHeight)
{
String imageURL =
@@ -61,7 +61,7 @@ public class ImageUrlUtils
/** generates URL of an image on Data Store server */
private static String createDatastoreImageUrl(String sessionID, WellImages images,
- String channel, ImageChannelStackReference channelStackRef, int width, int height)
+ String channel, WellImageChannelStack channelStackRef, int width, int height)
{
URLMethodWithParameters methodWithParameters =
createBasicImageURL(sessionID, images, channel);
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/PlateMaterialReviewer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/PlateMaterialReviewer.java
index 12494f2642f..e7c12018828 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/PlateMaterialReviewer.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/PlateMaterialReviewer.java
@@ -378,7 +378,11 @@ public class PlateMaterialReviewer extends AbstractSimpleBrowserGrid<WellContent
{
return null;
}
+ PlateImageParameters imageParameters = images.getImageParameters();
+ if (imageParameters.isMultidimensional())
+ {
+ }
final IChanneledViewerFactory viewerFactory = new IChanneledViewerFactory()
{
public Widget create(String channel)
@@ -391,7 +395,6 @@ public class PlateMaterialReviewer extends AbstractSimpleBrowserGrid<WellContent
new ChannelWidgetWithListener(viewerFactory);
widgetWithListener.update(channelChooser.getSimpleValue());
- PlateImageParameters imageParameters = images.getImageParameters();
channelChooser.addNamesAndListener(imageParameters.getChannelsNames(),
widgetWithListener.asSelectionChangedListener());
return widgetWithListener.asWidget();
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java
index c826f64c669..9b342f4c27f 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java
@@ -43,7 +43,7 @@ import ch.systemsx.cisd.openbis.plugin.screening.client.web.client.application.S
import ch.systemsx.cisd.openbis.plugin.screening.client.web.client.application.detailviewers.ChannelChooser.DefaultChannelState;
import ch.systemsx.cisd.openbis.plugin.screening.client.web.client.application.detailviewers.ChannelChooser.IChanneledViewerFactory;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.DatasetImagesReference;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ScreeningConstants;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation;
@@ -170,10 +170,10 @@ public class WellContentDialog extends Dialog
{
viewContext.getService().listImageChannelStacks(images.getDatasetCode(),
images.getDatastoreCode(), images.getWellLocation(),
- new AbstractAsyncCallback<List<ImageChannelStackReference>>(viewContext)
+ new AbstractAsyncCallback<List<WellImageChannelStack>>(viewContext)
{
@Override
- protected void process(List<ImageChannelStackReference> channelStackImages)
+ protected void process(List<WellImageChannelStack> channelStackImages)
{
LayoutContainer imageViewer =
createTimepointImageViewer(channelStackImages, images,
@@ -185,7 +185,7 @@ public class WellContentDialog extends Dialog
}
private static LayoutContainer createTimepointImageViewer(
- final List<ImageChannelStackReference> channelStackImages, final WellImages images,
+ final List<WellImageChannelStack> channelStackImages, final WellImages images,
final DefaultChannelState channelState, IViewContext<?> viewContext)
{
final String sessionId = getSessionId(viewContext);
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentTimepointsViewer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentTimepointsViewer.java
index 1e584ed3d81..1f26e3f3127 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentTimepointsViewer.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentTimepointsViewer.java
@@ -30,7 +30,7 @@ import com.extjs.gxt.ui.client.widget.LayoutContainer;
import com.extjs.gxt.ui.client.widget.Slider;
import com.extjs.gxt.ui.client.widget.layout.TableLayout;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
/**
* Allows to view timepoint images of the well.
@@ -41,10 +41,10 @@ class WellContentTimepointsViewer
{
public static LayoutContainer createTilesGrid(String sessionId,
- List<ImageChannelStackReference> channelStackImages, WellImages images, String channel,
+ List<WellImageChannelStack> channelStackImages, WellImages images, String channel,
int imageWidth, int imageHeight)
{
- Map<Float, List<ImageChannelStackReference>> channelStackImagesByTimepoint =
+ Map<Float, List<WellImageChannelStack>> channelStackImagesByTimepoint =
groupImagesByTimepoint(channelStackImages);
List<LayoutContainer> frames =
@@ -82,15 +82,15 @@ class WellContentTimepointsViewer
}
private static List<LayoutContainer> createTimepointFrames(
- Map<Float, List<ImageChannelStackReference>> channelStackImagesByTimepoint,
+ Map<Float, List<WellImageChannelStack>> channelStackImagesByTimepoint,
WellImages images, String channel, String sessionId, int imageWidth, int imageHeight)
{
final List<LayoutContainer> frames = new ArrayList<LayoutContainer>();
int counter = 0;
- for (Entry<Float, List<ImageChannelStackReference>> entry : channelStackImagesByTimepoint
+ for (Entry<Float, List<WellImageChannelStack>> entry : channelStackImagesByTimepoint
.entrySet())
{
- List<ImageChannelStackReference> imageReferences = entry.getValue();
+ List<WellImageChannelStack> imageReferences = entry.getValue();
final LayoutContainer container =
createTilesGridForTimepoint(imageReferences, images, channel, sessionId,
imageWidth, imageHeight);
@@ -113,19 +113,19 @@ class WellContentTimepointsViewer
}
private static LayoutContainer createTilesGridForTimepoint(
- List<ImageChannelStackReference> channelStackReferences, WellImages images,
+ List<WellImageChannelStack> channelStackReferences, WellImages images,
String channel, String sessionId, int imageWidth, int imageHeight)
{
final LayoutContainer container =
new LayoutContainer(new TableLayout(images.getTileColsNum()));
- ImageChannelStackReference[/* tileRow */][/* tileCol */] tilesMap =
+ WellImageChannelStack[/* tileRow */][/* tileCol */] tilesMap =
createTilesMap(channelStackReferences, images);
for (int row = 1; row <= images.getTileRowsNum(); row++)
{
for (int col = 1; col <= images.getTileColsNum(); col++)
{
- ImageChannelStackReference stackRef = tilesMap[row - 1][col - 1];
+ WellImageChannelStack stackRef = tilesMap[row - 1][col - 1];
if (stackRef != null)
{
ImageUrlUtils.addImageUrlWidget(container, sessionId, images, channel,
@@ -139,13 +139,13 @@ class WellContentTimepointsViewer
return container;
}
- private static ImageChannelStackReference[][] createTilesMap(
- List<ImageChannelStackReference> stackReferences, WellImages images)
+ private static WellImageChannelStack[][] createTilesMap(
+ List<WellImageChannelStack> stackReferences, WellImages images)
{
int rows = images.getTileRowsNum();
int cols = images.getTileColsNum();
- ImageChannelStackReference[][] map = new ImageChannelStackReference[rows][cols];
- for (ImageChannelStackReference stackRef : stackReferences)
+ WellImageChannelStack[][] map = new WellImageChannelStack[rows][cols];
+ for (WellImageChannelStack stackRef : stackReferences)
{
map[stackRef.getTileRow() - 1][stackRef.getTileCol() - 1] = stackRef;
}
@@ -167,18 +167,18 @@ class WellContentTimepointsViewer
return "Timepoint: " + timepoint + "sec (" + sequenceNumber + "/" + numberOfSequences + ")";
}
- private static Map<Float, List<ImageChannelStackReference>> groupImagesByTimepoint(
- List<ImageChannelStackReference> channelStackImages)
+ private static Map<Float, List<WellImageChannelStack>> groupImagesByTimepoint(
+ List<WellImageChannelStack> channelStackImages)
{
- Map<Float, List<ImageChannelStackReference>> result =
- new TreeMap<Float, List<ImageChannelStackReference>>();
- for (ImageChannelStackReference ref : channelStackImages)
+ Map<Float, List<WellImageChannelStack>> result =
+ new TreeMap<Float, List<WellImageChannelStack>>();
+ for (WellImageChannelStack ref : channelStackImages)
{
Float t = ref.tryGetTimepoint();
- List<ImageChannelStackReference> imageReferences = result.get(t);
+ List<WellImageChannelStack> imageReferences = result.get(t);
if (imageReferences == null)
{
- imageReferences = new ArrayList<ImageChannelStackReference>();
+ imageReferences = new ArrayList<WellImageChannelStack>();
result.put(t, imageReferences);
}
imageReferences.add(ref);
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ScreeningClientService.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ScreeningClientService.java
index d8e5fb01d87..74ef62db67b 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ScreeningClientService.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ScreeningClientService.java
@@ -57,7 +57,7 @@ import ch.systemsx.cisd.openbis.plugin.screening.BuildAndEnvironmentInfo;
import ch.systemsx.cisd.openbis.plugin.screening.client.web.client.IScreeningClientService;
import ch.systemsx.cisd.openbis.plugin.screening.shared.IScreeningServer;
import ch.systemsx.cisd.openbis.plugin.screening.shared.ResourceNames;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.LibraryRegistrationInfo;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages;
@@ -283,7 +283,7 @@ public final class ScreeningClientService extends AbstractClientService implemen
return server.getVocabulary(sessionToken, ScreeningConstants.PLATE_GEOMETRY);
}
- public List<ImageChannelStackReference> listImageChannelStacks(String datasetCode,
+ public List<WellImageChannelStack> listImageChannelStacks(String datasetCode,
String datastoreCode, WellLocation wellLocation)
{
final String sessionToken = getSessionToken();
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java
index a578f567ab8..86ca28aa00b 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServer.java
@@ -59,7 +59,7 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellMaterialMapping;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellReferenceWithDatasets;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateMaterialsSearchCriteria;
@@ -148,7 +148,7 @@ public final class ScreeningServer extends AbstractServer<IScreeningServer> impl
materialCriteria, true);
}
- public List<ImageChannelStackReference> listImageChannelStacks(String sessionToken,
+ public List<WellImageChannelStack> listImageChannelStacks(String sessionToken,
String datasetCode, String datastoreCode, WellLocation wellLocation)
{
Session session = getSession(sessionToken);
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java
index c56f526cdb8..827e69adc51 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/ScreeningServerLogger.java
@@ -42,7 +42,7 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Plate;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateIdentifier;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellMaterialMapping;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.PlateWellReferenceWithDatasets;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateMaterialsSearchCriteria;
@@ -96,7 +96,7 @@ final class ScreeningServerLogger extends AbstractServerLogger implements IScree
return null;
}
- public List<ImageChannelStackReference> listImageChannelStacks(String sessionToken,
+ public List<WellImageChannelStack> listImageChannelStacks(String sessionToken,
String datasetCode, String datastoreCode, WellLocation wellLocation)
{
logAccess(sessionToken, "listImageChannelStacks", "dataset(%s) well(%s)", datasetCode,
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java
index 57cba039aa6..6d706ba293e 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/server/logic/PlateContentLoader.java
@@ -40,7 +40,7 @@ import ch.systemsx.cisd.openbis.generic.shared.translator.SampleTranslator;
import ch.systemsx.cisd.openbis.generic.shared.util.HibernateUtils;
import ch.systemsx.cisd.openbis.plugin.screening.server.IScreeningBusinessObjectFactory;
import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.Geometry;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.DatasetImagesReference;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.DatasetReference;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
@@ -96,7 +96,7 @@ public class PlateContentLoader
/**
* Loads information about all channels stacks of a given well in a given dataset.
*/
- public static List<ImageChannelStackReference> loadImageChannelStacks(Session session,
+ public static List<WellImageChannelStack> loadImageChannelStacks(Session session,
IScreeningBusinessObjectFactory businessObjectFactory, String datasetCode,
String datastoreCode, WellLocation wellLocation)
{
@@ -325,7 +325,7 @@ public class PlateContentLoader
.createForContainer(plateId));
}
- private List<ImageChannelStackReference> loadImageChannelStacks(String datasetCode,
+ private List<WellImageChannelStack> loadImageChannelStacks(String datasetCode,
String datastoreCode, WellLocation wellLocation)
{
IHCSDatasetLoader datasetLoader =
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java
index 6b72c3c9680..1772381c512 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/IScreeningServer.java
@@ -38,7 +38,7 @@ import ch.systemsx.cisd.openbis.generic.shared.basic.dto.TableModel;
import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Vocabulary;
import ch.systemsx.cisd.openbis.plugin.screening.shared.authorization.PlateMaterialsSearchCriteriaPredicate;
import ch.systemsx.cisd.openbis.plugin.screening.shared.authorization.WellContentValidator;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateContent;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateImages;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.PlateMaterialsSearchCriteria;
@@ -79,7 +79,7 @@ public interface IScreeningServer extends IServer
@Transactional
@RolesAllowed(RoleWithHierarchy.SPACE_OBSERVER)
- public List<ImageChannelStackReference> listImageChannelStacks(String sessionToken,
+ public List<WellImageChannelStack> listImageChannelStacks(String sessionToken,
@AuthorizationGuard(guardClass = DataSetCodePredicate.class) String datasetCode,
String datastoreCode, WellLocation wellLocation);
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/ImageChannelStackReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/WellImageChannelStack.java
similarity index 87%
rename from screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/ImageChannelStackReference.java
rename to screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/WellImageChannelStack.java
index f993c24131d..bea1ffe0721 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/ImageChannelStackReference.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/basic/dto/WellImageChannelStack.java
@@ -20,11 +20,11 @@ import com.google.gwt.user.client.rpc.IsSerializable;
/**
* Describes one channel stack which has images for many channels and a specific tile (and
- * optionally timepoint and/or depth).
+ * optionally timepoint and/or depth) of one well.
*
* @author Tomasz Pylak
*/
-public class ImageChannelStackReference implements IsSerializable
+public class WellImageChannelStack implements IsSerializable
{
// technical id in the imaging db
private long channelStackTechId;
@@ -35,12 +35,12 @@ public class ImageChannelStackReference implements IsSerializable
// GWT only
@SuppressWarnings("unused")
- private ImageChannelStackReference()
+ private WellImageChannelStack()
{
}
- public ImageChannelStackReference(long channelStackTechId, int tileRow, int tileCol,
- Float tOrNull, Float zOrNull)
+ public WellImageChannelStack(long channelStackTechId, int tileRow, int tileCol, Float tOrNull,
+ Float zOrNull)
{
this.channelStackTechId = channelStackTechId;
this.tileRow = tileRow;
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java
index 498fd5cffb0..4c407ded81d 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/HCSDatasetLoader.java
@@ -21,7 +21,7 @@ import java.util.Arrays;
import java.util.List;
import ch.systemsx.cisd.bds.hcs.Geometry;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation;
import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.IImagingQueryDAO;
import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.ImgChannelStackDTO;
@@ -119,7 +119,7 @@ public class HCSDatasetLoader implements IHCSDatasetLoader
return dataset.getIsMultidimensional();
}
- public List<ImageChannelStackReference> listImageChannelStacks(WellLocation wellLocation)
+ public List<WellImageChannelStack> listImageChannelStacks(WellLocation wellLocation)
{
int spotYRow = wellLocation.getRow();
int spotXColumn = wellLocation.getColumn();
@@ -128,9 +128,9 @@ public class HCSDatasetLoader implements IHCSDatasetLoader
return convert(stacks);
}
- private static List<ImageChannelStackReference> convert(List<ImgChannelStackDTO> stacks)
+ private static List<WellImageChannelStack> convert(List<ImgChannelStackDTO> stacks)
{
- List<ImageChannelStackReference> result = new ArrayList<ImageChannelStackReference>();
+ List<WellImageChannelStack> result = new ArrayList<WellImageChannelStack>();
for (ImgChannelStackDTO stack : stacks)
{
result.add(convert(stack));
@@ -138,9 +138,9 @@ public class HCSDatasetLoader implements IHCSDatasetLoader
return result;
}
- private static ImageChannelStackReference convert(ImgChannelStackDTO stack)
+ private static WellImageChannelStack convert(ImgChannelStackDTO stack)
{
- return new ImageChannelStackReference(stack.getId(), stack.getRow(), stack.getColumn(),
+ return new WellImageChannelStack(stack.getId(), stack.getRow(), stack.getColumn(),
stack.getT(), stack.getZ());
}
}
\ No newline at end of file
diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java
index cdddd3a5e6b..1034425bfca 100644
--- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java
+++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/IHCSDatasetLoader.java
@@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.imaging;
import java.util.List;
import ch.systemsx.cisd.bds.hcs.Geometry;
-import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.ImageChannelStackReference;
+import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellImageChannelStack;
import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation;
/**
@@ -44,5 +44,5 @@ public interface IHCSDatasetLoader
/**
* Loads information about all channels stacks of a given well.
*/
- List<ImageChannelStackReference> listImageChannelStacks(WellLocation wellLocation);
+ List<WellImageChannelStack> listImageChannelStacks(WellLocation wellLocation);
}
\ No newline at end of file
--
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