diff --git a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java index 22eac1f49e14f759705de7172551effff96be70c..930fac451729c83084dd4c5fa8885b769cd5ce52 100644 --- a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java +++ b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeederTest.java @@ -16,6 +16,8 @@ package ch.ethz.bsse.cisd.dsu.dss; +import static ch.ethz.bsse.cisd.dsu.dss.FlowLaneFeeder.asFileName; + import java.io.File; import java.io.FilenameFilter; import java.util.Arrays; @@ -265,8 +267,10 @@ public class FlowLaneFeederTest extends AbstractFileSystemTestCase SAMPLE_CODE + SampleIdentifier.CONTAINED_SAMPLE_CODE_SEPARARTOR_STRING + "2"; assertEquals("G2_" + sampleName, transferedFiles[0].getName()); File metaFile = getFile(transferedFiles[0], FlowLaneFeeder.META_DATA_FILE_TYPE); - assertEquals(sampleName + "_" + EXTERNAL_SAMPLE_NAME + FlowLaneFeeder.META_DATA_FILE_TYPE, - metaFile.getName()); + String myFileName = + asFileName(sampleName + "_" + EXTERNAL_SAMPLE_NAME + + FlowLaneFeeder.META_DATA_FILE_TYPE); + assertEquals(myFileName, metaFile.getName()); assertHardLinkOnSameFile(originalFlowLane2, getFile(transferedFiles[0], "2.srf")); context.assertIsSatisfied(); @@ -306,8 +310,8 @@ public class FlowLaneFeederTest extends AbstractFileSystemTestCase SAMPLE_CODE + SampleIdentifier.CONTAINED_SAMPLE_CODE_SEPARARTOR_STRING + "2"; assertEquals("G2_" + sampleName, transferedFiles[0].getName()); File metaFile = getFile(transferedFiles[0], FlowLaneFeeder.META_DATA_FILE_TYPE); - assertEquals(sampleName + "_" + EXTERNAL_SAMPLE_NAME + FlowLaneFeeder.META_DATA_FILE_TYPE, - metaFile.getName()); + assertEquals(asFileName(sampleName + "_" + EXTERNAL_SAMPLE_NAME + + FlowLaneFeeder.META_DATA_FILE_TYPE), metaFile.getName()); List<String> metaData = FileUtilities.loadToStringList(metaFile); String lastLine = metaData.remove(metaData.size() - 1); assertEquals("[Parent\tnull, Code\tfc:2, Contact Person Email\tab@c.de, " @@ -472,7 +476,7 @@ public class FlowLaneFeederTest extends AbstractFileSystemTestCase String metaDataFileName = flowLaneSampleCode + (flowLaneNumber.equals("2") ? "_" + EXTERNAL_SAMPLE_NAME : "") + FlowLaneFeeder.META_DATA_FILE_TYPE; - metaDataFileName = FlowLaneFeeder.asFileName(metaDataFileName); + metaDataFileName = asFileName(metaDataFileName); assertEquals(true, new File(ds, metaDataFileName).exists()); assertEquals(true, new File(dropBox, Constants.IS_FINISHED_PREFIX + fileName).exists()); }