From ac35b2dd01ca0c153e98ab61b22e5d49ee60085b Mon Sep 17 00:00:00 2001
From: buczekp <buczekp>
Date: Tue, 15 Jun 2010 09:15:28 +0000
Subject: [PATCH] [LMS-1323] missing commit
SVN: 16500
---
rtd_phosphonetx/.classpath | 1 +
.../web/client/application/ProteinViewer.java | 13 ++++++-------
2 files changed, 7 insertions(+), 7 deletions(-)
diff --git a/rtd_phosphonetx/.classpath b/rtd_phosphonetx/.classpath
index ec186f0bf31..7e38f90e972 100644
--- a/rtd_phosphonetx/.classpath
+++ b/rtd_phosphonetx/.classpath
@@ -31,5 +31,6 @@
<classpathentry kind="lib" path="/libraries/jmock/objenesis/objenesis-1.0.jar"/>
<classpathentry kind="lib" path="/libraries/jmock/jmock.jar"/>
<classpathentry kind="lib" path="/libraries/fastutil/fastutil.jar" sourcepath="/libraries/fastutil/fastutil-src.zip"/>
+ <classpathentry kind="lib" path="/libraries/cisd-common-basic/cisd-common-basic.jar"/>
<classpathentry kind="output" path="targets/www/WEB-INF/classes"/>
</classpath>
diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ProteinViewer.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ProteinViewer.java
index f0c30e2f196..3fa06465ca3 100644
--- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ProteinViewer.java
+++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/ProteinViewer.java
@@ -34,6 +34,7 @@ import com.extjs.gxt.ui.client.widget.layout.FitLayout;
import com.extjs.gxt.ui.client.widget.layout.RowData;
import com.extjs.gxt.ui.client.widget.layout.RowLayout;
+import ch.systemsx.cisd.common.shared.basic.utils.StringUtils;
import ch.systemsx.cisd.openbis.generic.client.web.client.application.AbstractAsyncCallback;
import ch.systemsx.cisd.openbis.generic.client.web.client.application.DisposableSectionPanel;
import ch.systemsx.cisd.openbis.generic.client.web.client.application.GenericConstants;
@@ -49,7 +50,6 @@ import ch.systemsx.cisd.openbis.generic.client.web.client.application.ui.Abstrac
import ch.systemsx.cisd.openbis.generic.client.web.client.application.ui.RowLayoutManager;
import ch.systemsx.cisd.openbis.generic.client.web.client.application.ui.grid.IDisposableComponent;
import ch.systemsx.cisd.openbis.generic.client.web.client.application.ui.property.PropertyGrid;
-import ch.systemsx.cisd.openbis.generic.client.web.client.application.util.StringUtils;
import ch.systemsx.cisd.openbis.generic.shared.basic.IEntityInformationHolder;
import ch.systemsx.cisd.openbis.generic.shared.basic.IEntityInformationHolderWithIdentifier;
import ch.systemsx.cisd.openbis.generic.shared.basic.IIdAndCodeHolder;
@@ -175,7 +175,7 @@ public class ProteinViewer extends AbstractViewer<IEntityInformationHolder> impl
add(centerPanel, createBorderLayoutData(LayoutRegion.CENTER));
rowDataManager.addToContainer(propertyPanel, new RowData(1, 0.5f));
List<IndistinguishableProteinInfo> indistinguishableProteins =
- details.getIndistinguishableProteinInfos();
+ details.getIndistinguishableProteinInfos();
if (indistinguishableProteins.isEmpty() == false)
{
List<Peptide> peptides = details.getPeptides();
@@ -189,7 +189,7 @@ public class ProteinViewer extends AbstractViewer<IEntityInformationHolder> impl
layout();
}
}
-
+
private ContentPanel createIndistinguishableProteinsSection(
List<IndistinguishableProteinInfo> indistinguishableProteins, List<Peptide> peptides)
{
@@ -209,8 +209,7 @@ public class ProteinViewer extends AbstractViewer<IEntityInformationHolder> impl
properties.put(viewContext.getMessage(Dict.ACCESSION_NUMBER), info);
propertyGrid.registerPropertyValueRenderer(IndistinguishableProteinInfo.class,
PropertyValueRenderers.createProteinIdentLinkRenderer(viewContext));
- properties.put(viewContext.getMessage(Dict.PROTEIN_DESCRIPTION), info
- .getDescription());
+ properties.put(viewContext.getMessage(Dict.PROTEIN_DESCRIPTION), info.getDescription());
String markedSequence = markPeptides(info.getSequence(), peptides);
properties.put(viewContext.getMessage(Dict.SEQUENCE_NAME), markedSequence);
properties.put(viewContext.getMessage(Dict.COVERAGE), info.getCoverage());
@@ -225,7 +224,7 @@ public class ProteinViewer extends AbstractViewer<IEntityInformationHolder> impl
panel.add(tabPanel, new RowData(1, 1));
return panel;
}
-
+
private void recreateUIWithDatasetTable(ProteinByExperiment protein, ContentPanel propertyPanel)
{
BorderLayoutData layoutData = createBorderLayoutData(LayoutRegion.WEST);
@@ -301,7 +300,7 @@ public class ProteinViewer extends AbstractViewer<IEntityInformationHolder> impl
String markedSequence =
markPeptides(proteinDetails.getSequence(), proteinDetails.getPeptides());
properties.put(viewContext.getMessage(Dict.SEQUENCE_NAME), markedSequence);
-
+
properties.put(viewContext.getMessage(Dict.COVERAGE), proteinDetails.getCoverage());
propertyGrid.registerPropertyValueRenderer(Peptide.class, PropertyValueRenderers
--
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