From a8614121fe0c762b8ecf46c24542d9dc11b1086c Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Tue, 19 Oct 2010 08:13:24 +0000
Subject: [PATCH] changed 'group' code with 'space' code
SVN: 18339
---
.../dist/etc/service.properties | 73 +++++++++++++++++--
1 file changed, 66 insertions(+), 7 deletions(-)
diff --git a/deep_sequencing_unit/dist/etc/service.properties b/deep_sequencing_unit/dist/etc/service.properties
index d655d054e49..4abccd8a646 100644
--- a/deep_sequencing_unit/dist/etc/service.properties
+++ b/deep_sequencing_unit/dist/etc/service.properties
@@ -103,7 +103,7 @@ illumina-summary.properties-file =
# Comma separated names of processing threads. Each thread should have configuration properties prefixed with its name.
# E.g. 'code-extractor' property for the thread 'my-etl' should be specified as 'my-etl.code-extractor'
-inputs = flow-cell, fl1, fl2
+inputs = flow-cell, fl1, fl2, fl3, fl4, fl5, fl6, fl7, fl8
# ---------------------------------------------------------------------------
# 'flow-cell' thread configuration
@@ -118,16 +118,16 @@ flow-cell.incoming-dir = data/incoming
# The default value is 'marker-file'.
flow-cell.incoming-data-completeness-condition = auto-detection
-# The group the samples extracted by this thread belong to. If commented out or empty, then samples
+# The space the samples extracted by this thread belong to. If commented out or empty, then samples
# are considered associated to a database instance (not group private).
-# flow-cell.group-code = <change this>
+# flow-cell.space-code = <change this>
# ---------------- Plugin properties
# The extractor class to use for code extraction
flow-cell.data-set-info-extractor = ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor
flow-cell.data-set-info-extractor.strip-file-extension = true
flow-cell.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
-flow-cell.data-set-info-extractor.group-code = TEST
+flow-cell.data-set-info-extractor.space-code = TEST
# Location of file containing data set properties
#flow-cell.data-set-info-extractor.data-set-properties-file-name = data-set.properties
@@ -135,7 +135,7 @@ flow-cell.data-set-info-extractor.group-code = TEST
flow-cell.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
flow-cell.type-extractor.file-format-type = PROPRIETARY
flow-cell.type-extractor.locator-type = RELATIVE_LOCATION
-flow-cell.type-extractor.data-set-type = PLG_RESULT
+flow-cell.type-extractor.data-set-type = FLOW_CELL
flow-cell.type-extractor.is-measured = true
# The storage processor (IStorageProcessor implementation)
@@ -150,7 +150,7 @@ flow-cell.storage-processor.meta-data-file-prefix = PREFIX_FOR_TSV
fl1.incoming-dir = data/drop-box-1
fl1.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
fl1.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
-fl1.data-set-info-extractor.index-of-group-code = 0
+fl1.data-set-info-extractor.index-of-space-code = 0
fl1.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
fl1.type-extractor.file-format-type = PROPRIETARY
fl1.type-extractor.data-set-type = FLOW_LANE
@@ -160,9 +160,68 @@ fl1.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
fl2.incoming-dir = data/drop-box-2
fl2.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
fl2.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
-fl2.data-set-info-extractor.index-of-group-code = 0
+fl2.data-set-info-extractor.index-of-space-code = 0
fl2.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
fl2.type-extractor.file-format-type = PROPRIETARY
fl2.type-extractor.data-set-type = FLOW_LANE
fl2.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+# -------- Flow Lane 3 --------------------------------------
+fl3.incoming-dir = data/drop-box-3
+fl3.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
+fl3.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
+fl3.data-set-info-extractor.index-of-space-code = 0
+fl3.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
+fl3.type-extractor.file-format-type = PROPRIETARY
+fl3.type-extractor.data-set-type = FLOW_LANE
+fl3.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
+# -------- Flow Lane 4 --------------------------------------
+fl4.incoming-dir = data/drop-box-4
+fl4.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
+fl4.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
+fl4.data-set-info-extractor.index-of-space-code = 0
+fl4.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
+fl4.type-extractor.file-format-type = PROPRIETARY
+fl4.type-extractor.data-set-type = FLOW_LANE
+fl4.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
+# -------- Flow Lane 5 --------------------------------------
+fl5.incoming-dir = data/drop-box-5
+fl5.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
+fl5.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
+fl5.data-set-info-extractor.index-of-space-code = 0
+fl5.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
+fl5.type-extractor.file-format-type = PROPRIETARY
+fl5.type-extractor.data-set-type = FLOW_LANE
+fl5.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
+# -------- Flow Lane 6 --------------------------------------
+fl6.incoming-dir = data/drop-box-6
+fl6.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
+fl6.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
+fl6.data-set-info-extractor.index-of-space-code = 0
+fl6.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
+fl6.type-extractor.file-format-type = PROPRIETARY
+fl6.type-extractor.data-set-type = FLOW_LANE
+fl6.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
+# -------- Flow Lane 7 --------------------------------------
+fl7.incoming-dir = data/drop-box-7
+fl7.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
+fl7.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
+fl7.data-set-info-extractor.index-of-space-code = 0
+fl7.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
+fl7.type-extractor.file-format-type = PROPRIETARY
+fl7.type-extractor.data-set-type = FLOW_LANE
+fl7.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
+# -------- Flow Lane 8 --------------------------------------
+fl8.incoming-dir = data/drop-box-8
+fl8.data-set-info-extractor = ch.ethz.bsse.cisd.dsu.dss.FlowLaneDataSetInfoExtractor
+fl8.data-set-info-extractor.entity-separator = ${data-set-file-name-entity-separator}
+fl8.data-set-info-extractor.index-of-space-code = 0
+fl8.type-extractor = ch.systemsx.cisd.etlserver.SimpleTypeExtractor
+fl8.type-extractor.file-format-type = PROPRIETARY
+fl8.type-extractor.data-set-type = FLOW_LANE
+fl8.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
\ No newline at end of file
--
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