diff --git a/screening/dist/etc/service.properties b/screening/dist/etc/service.properties index fb363b46c7be2e6e2516a43c8eee78ce55f50516..ab1c6e03b6faa49311ee1f8a1fcbbaecff8c38c5 100644 --- a/screening/dist/etc/service.properties +++ b/screening/dist/etc/service.properties @@ -234,14 +234,26 @@ merged-channels-images.type-extractor.data-set-type = HCS_IMAGE merged-channels-images.type-extractor.is-measured = true merged-channels-images.storage-processor = ch.systemsx.cisd.openbis.dss.etl.PlateStorageProcessor +# Should the thumbnails be generated? +# It slows down the dataset registration, but increases the performance when the user wants to see the image. +# Can be 'true' or 'false', 'false' is the default value merged-channels-images.storage-processor.generate-thumbnails = true +# Thumbnails size in pixels #merged-channels-images.storage-processor.thumbnail-max-width = 300 #merged-channels-images.storage-processor.thumbnail-max-height = 200 +# Names of the channels in which images have been acquired. merged-channels-images.storage-processor.channel-names = green, blue +# Format: [width]>x[height], e.g. 3x4. Specifies the grid into which a microscope divided the well to acquire images. merged-channels-images.storage-processor.well_geometry = 3x3 -merged-channels-images.storage-processor.file-extractor = ch.systemsx.cisd.openbis.dss.etl.lmc.HCSImageFileExtractor +# implementation of the IHCSImageFileExtractor interface which maps images to the location on the plate and particular channel +# Here: the extractor requireds that each image name should adhere to the schema: +# <any-text>_<plate-code>_<well-code>_<tile-code>_<channel-name>.<allowed-image-extension> +merged-channels-images.storage-processor.file-extractor = ch.systemsx.cisd.openbis.dss.etl.HCSImageFileExtractor +# specification of the imaging db merged-channels-images.storage-processor.data-source = imaging-db -# Available values: RED, GREEN or BLUE +# Optional comma separated list of color components. +# Available values: RED, GREEN or BLUE. +# If specified then the channels are extracted from the color components and override 'file-extractor' results. merged-channels-images.storage-processor.extract-single-image-channels = GREEN, BLUE # ---------------------------------------------------------------------------