From a1facf47c26b59575414ae43b1a503b53c0fac5d Mon Sep 17 00:00:00 2001
From: kaloyane <kaloyane>
Date: Mon, 25 Jul 2011 16:10:02 +0000
Subject: [PATCH] [LMS-2401] Sanofi: make library template a managed property
(and thus hide it from the standard view)
SVN: 22261
---
.../sanofi-managed-property.py | 82 +++++++++++++
.../managed_property/sanofi-upgrade.sql | 109 ++++++++++++++++++
2 files changed, 191 insertions(+)
create mode 100644 sanofi/resource/managed_property/sanofi-managed-property.py
create mode 100644 sanofi/resource/managed_property/sanofi-upgrade.sql
diff --git a/sanofi/resource/managed_property/sanofi-managed-property.py b/sanofi/resource/managed_property/sanofi-managed-property.py
new file mode 100644
index 00000000000..2f5e059eee8
--- /dev/null
+++ b/sanofi/resource/managed_property/sanofi-managed-property.py
@@ -0,0 +1,82 @@
+from java.text import DecimalFormat
+from ch.systemsx.cisd.common.geometry import ConversionUtils
+
+def parseLines(value):
+ lines = []
+ if value:
+ lines = value.strip().split("\n")
+
+ return [ line.split("\t") for line in lines ]
+
+def getMaxWidth(lines):
+ maxWidth = 0
+ for line in lines:
+ maxWidth = max(maxWidth, len(line))
+ return maxWidth
+
+def isControlWell(value):
+ return value in ["H", "L"]
+
+def isCompoundWell(value):
+ try:
+ numberParser = DecimalFormat()
+ numberParser.parse(value)
+ return True
+ except:
+ return False
+
+def validate(lines):
+ for line in lines:
+ for value in line:
+ normalizedValue = value.strip().upper()
+ if normalizedValue:
+ if isControlWell(normalizedValue):
+ pass
+ elif isCompoundWell(normalizedValue):
+ pass
+ else:
+ raise ValidationException("Invalid value found in template : " + normalizedValue)
+
+
+def configureUI():
+ propValue = ""
+ if not property.isSpecialValue():
+ propValue = property.getValue()
+ lines = parseLines(propValue)
+ tableBuilder = createTableBuilder()
+
+ if lines:
+ width = getMaxWidth(lines)
+ header = [ str(item) for item in range(1, width + 1) ]
+ header.insert(0, " ")
+ tableBuilder.addFullHeader(header)
+
+ for i in range(0, len(lines)):
+ rowLetterCode = ConversionUtils.translateRowNumberIntoLetterCode(i+1)
+ row = [ rowLetterCode ] + lines[i]
+ tableBuilder.addFullRow(row)
+
+ property.setOwnTab(True)
+ uiDesc = property.getUiDescription()
+ uiDesc.useTableOutput(tableBuilder.getTableModel())
+
+ factory = inputWidgetFactory()
+ editAction = uiDesc.addTableAction("Edit").setDescription("Edit the library template. "
+ "Copy the template from Excel and paste it in the text are below.")
+ textArea = factory.createMultilineTextInputField("Text")
+ textArea.setValue(propValue)
+ editAction.addInputWidgets([ textArea ])
+
+def updateFromUI(action):
+ """in the "Edit" action we simply replace the entire property content"""
+ if action.getName() == "Edit":
+ newValue = action.getInputWidgetDescriptions()[0].getValue()
+ lines = parseLines(newValue)
+ validate(lines)
+ if not newValue:
+ property.setValue("")
+ else:
+ property.setValue(newValue)
+
+
+
diff --git a/sanofi/resource/managed_property/sanofi-upgrade.sql b/sanofi/resource/managed_property/sanofi-upgrade.sql
new file mode 100644
index 00000000000..9126e592af7
--- /dev/null
+++ b/sanofi/resource/managed_property/sanofi-upgrade.sql
@@ -0,0 +1,109 @@
+DELETE
+ FROM scripts
+ WHERE NAME = 'SANOFI_LIBRARY_TEMPLATE';
+
+INSERT
+ INTO scripts
+ (id, dbin_id, name, description, pers_id_registerer, entity_kind, script_type, script)
+
+ VALUES
+ (
+ nextval('script_id_seq'),
+ (select max(id) from database_instances),
+ 'SANOFI_LIBRARY_TEMPLATE',
+ 'Script for managed property library template',
+ (select id from persons where user_id='admin'),
+ 'EXPERIMENT',
+ 'MANAGED_PROPERTY',
+ E'
+from java.text import DecimalFormat
+from ch.systemsx.cisd.common.geometry import ConversionUtils
+
+def parseLines(value):
+ lines = []
+ if value:
+ lines = value.strip().split("\\n")
+
+ return [ line.split("\\t") for line in lines ]
+
+def getMaxWidth(lines):
+ maxWidth = 0
+ for line in lines:
+ maxWidth = max(maxWidth, len(line))
+ return maxWidth
+
+def isControlWell(value):
+ return value in ["H", "L"]
+
+def isCompoundWell(value):
+ try:
+ numberParser = DecimalFormat()
+ numberParser.parse(value)
+ return True
+ except:
+ return False
+
+def validate(lines):
+ for line in lines:
+ for value in line:
+ normalizedValue = value.strip().upper()
+ if normalizedValue:
+ if isControlWell(normalizedValue):
+ pass
+ elif isCompoundWell(normalizedValue):
+ pass
+ else:
+ raise ValidationException("Invalid value found in template : " + normalizedValue)
+
+
+def configureUI():
+ propValue = ""
+ if not property.isSpecialValue():
+ propValue = property.getValue()
+ lines = parseLines(propValue)
+ tableBuilder = createTableBuilder()
+
+ if lines:
+ width = getMaxWidth(lines)
+ header = [ str(item) for item in range(1, width + 1) ]
+ header.insert(0, " ")
+ tableBuilder.addFullHeader(header)
+
+ for i in range(0, len(lines)):
+ rowLetterCode = ConversionUtils.translateRowNumberIntoLetterCode(i+1)
+ row = [ rowLetterCode ] + lines[i]
+ tableBuilder.addFullRow(row)
+
+ property.setOwnTab(True)
+ uiDesc = property.getUiDescription()
+ uiDesc.useTableOutput(tableBuilder.getTableModel())
+
+ factory = inputWidgetFactory()
+ editAction = uiDesc.addTableAction("Edit").setDescription("Edit the library template. "
+ "Copy the template from Excel and paste it in the text are below.")
+ textArea = factory.createMultilineTextInputField("Text")
+ textArea.setValue(propValue)
+ editAction.addInputWidgets([ textArea ])
+
+def updateFromUI(action):
+ """in the "Edit" action we simply replace the entire property content"""
+ if action.getName() == "Edit":
+ newValue = action.getInputWidgetDescriptions()[0].getValue()
+ lines = parseLines(newValue)
+ validate(lines)
+ if not newValue:
+ property.setValue("")
+ else:
+ property.setValue(newValue)
+
+');
+
+
+UPDATE experiment_type_property_types
+SET
+ is_managed_internally=True,
+ script_id=(select id from scripts where name='SANOFI_LIBRARY_TEMPLATE')
+WHERE
+ prty_id = (select id from property_types where code='LIBRARY_TEMPLATE')
+ AND
+ exty_id = (select id from experiment_types where code='COMPOUND_HCS')
\ No newline at end of file
--
GitLab