From 9cf3ac2bb839dd2684c9ad1817a0f92eca4caf51 Mon Sep 17 00:00:00 2001
From: juanf <juanf>
Date: Tue, 4 Nov 2014 14:47:34 +0000
Subject: [PATCH] SSDM-1078 : PAPER - Provide sensible defaults -
Implementation
SVN: 32721
---
.../newbrowser/1/as/initialize-master-data.py | 19 ++++++++++++++-----
1 file changed, 14 insertions(+), 5 deletions(-)
diff --git a/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py b/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
index 343e596858e..1e107b4d5bd 100644
--- a/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
+++ b/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
@@ -18,12 +18,15 @@
import ch.systemsx.cisd.openbis.generic.server.jython.api.v1.DataType as DataType
##
-## Help Methods
+## Globals
##
vocabulariesCache = {};
propertiesCache = {};
tr = service.transaction()
+##
+## API Facade
+##
def createVocabularyWithTerms(vocabularyCode, terms):
vocabulary = tr.createNewVocabulary(vocabularyCode);
addTerms(vocabulary, terms);
@@ -77,9 +80,8 @@ def addProperty(entity, propertyCode, section, propertyLabel, dataType, vocabula
propertyAssignment.setSection(section);
##
-## Vocabularies
+## Vocabulary Types
##
-
createVocabularyWithTerms("HOST", [
["MOUSE", "mouse"],
["RAT", "rat"],
@@ -347,7 +349,6 @@ createVocabularyWithTerms("MACHINE", [
##
## DataSet Types
##
-
createDataSetTypeWithProperties("ELN_PREVIEW", "PHYSICAL", "ELN Preview image", []);
createDataSetTypeWithProperties("SEQ_FILE", "PHYSICAL", "", [
@@ -391,7 +392,6 @@ createExperimentTypeWithProperties("DEFAULT_EXPERIMENT", "Default Experiment", [
##
## Sample Types
##
-
createSampleTypeWithProperties("ANTIBODY", "", [
["NAME", "General", "Name", DataType.VARCHAR, None, "Name"],
["HOST", "General", "Host", DataType.CONTROLLEDVOCABULARY, "HOST", "Host used to produce the antibody"],
@@ -408,3 +408,12 @@ createSampleTypeWithProperties("ANTIBODY", "", [
["NOTES", "Comments", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes"],
["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
]);
+
+createSampleTypeWithProperties("CHEMICAL", "", [
+ ["NAME", "General", "Name", DataType.MULTILINE_VARCHAR, None, "Name"],
+ ["SUPPLIER", "Supplier and storage", "Supplier", DataType.MULTILINE_VARCHAR, None, "Supplier of the product"],
+ ["ARTICLE_NUMBER", "Supplier and storage", "Art. Number", DataType.MULTILINE_VARCHAR, None, "Article number of the product"],
+ ["STORAGE", "Supplier and storage", "Storage", DataType.CONTROLLEDVOCABULARY, "STORAGE", "Storage conditions of the product"],
+ ["XMLCOMMENTS", "Comments", "Comments List", DataType.VARCHAR, None, "Several comments can be added by different users"],
+]);
+
--
GitLab