From 9a7f93545a84ef3bec16d596306b225d0f08e591 Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Tue, 24 Jan 2012 13:46:05 +0000
Subject: [PATCH] LMS-2754 spring application context, GWT configuration,
initial build.xml
SVN: 24275
---
openbis_standard_technologies/.classpath | 6 +-
openbis_standard_technologies/build/antrun.sh | 6 ++
openbis_standard_technologies/build/build.xml | 9 ++
.../etc/web-client.properties | 102 ++++++++++++++++++
.../resource/server/spring-servlet.xml | 33 ++++++
.../resource/server/web.xml | 30 ++++++
.../source/java/.gitignore | 0
.../ch/systemsx/cisd/openbis/OpenBIS.gwt.xml | 21 ++++
.../cisd/openbis/OpenBISFirefox.gwt.xml | 21 ++++
.../cisd/openbis/OpenBISSafari.gwt.xml | 21 ++++
.../client/application/StandardClient.java | 53 +++++++++
.../cisd/openbis/client/web/public/index.html | 59 ++++++++++
.../source/java/service.properties | 90 ++++++++++++++++
...andard-technologies-applicationContext.xml | 24 +++++
.../sourceTest/java/tests.xml | 13 +++
15 files changed, 487 insertions(+), 1 deletion(-)
create mode 100755 openbis_standard_technologies/build/antrun.sh
create mode 100644 openbis_standard_technologies/build/build.xml
create mode 100644 openbis_standard_technologies/etc/web-client.properties
create mode 100644 openbis_standard_technologies/resource/server/spring-servlet.xml
create mode 100644 openbis_standard_technologies/resource/server/web.xml
delete mode 100644 openbis_standard_technologies/source/java/.gitignore
create mode 100644 openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBIS.gwt.xml
create mode 100644 openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISFirefox.gwt.xml
create mode 100644 openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISSafari.gwt.xml
create mode 100644 openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/client/application/StandardClient.java
create mode 100644 openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/public/index.html
create mode 100644 openbis_standard_technologies/source/java/service.properties
create mode 100644 openbis_standard_technologies/source/java/standard-technologies-applicationContext.xml
create mode 100644 openbis_standard_technologies/sourceTest/java/tests.xml
diff --git a/openbis_standard_technologies/.classpath b/openbis_standard_technologies/.classpath
index 05fcfe28af1..587db0f66eb 100644
--- a/openbis_standard_technologies/.classpath
+++ b/openbis_standard_technologies/.classpath
@@ -1,6 +1,10 @@
<?xml version="1.0" encoding="UTF-8"?>
<classpath>
<classpathentry kind="src" path="source/java"/>
+ <classpathentry kind="src" path="sourceTest/java"/>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/J2SE-1.5"/>
- <classpathentry kind="output" path="targets/classes"/>
+ <classpathentry combineaccessrules="false" kind="src" path="/rtd_phosphonetx"/>
+ <classpathentry combineaccessrules="false" kind="src" path="/screening"/>
+ <classpathentry kind="lib" path="/libraries/gwt2.4/gwt-user.jar"/>
+ <classpathentry kind="output" path="targets/www/WEB-INF/classes"/>
</classpath>
diff --git a/openbis_standard_technologies/build/antrun.sh b/openbis_standard_technologies/build/antrun.sh
new file mode 100755
index 00000000000..5ff1a62b259
--- /dev/null
+++ b/openbis_standard_technologies/build/antrun.sh
@@ -0,0 +1,6 @@
+#! /bin/bash
+
+ME="$0"
+MYDIR=${ME%/*}
+cd $MYDIR
+ant -lib ../../build_resources/lib/ecj.jar "$@"
diff --git a/openbis_standard_technologies/build/build.xml b/openbis_standard_technologies/build/build.xml
new file mode 100644
index 00000000000..7841f11bf61
--- /dev/null
+++ b/openbis_standard_technologies/build/build.xml
@@ -0,0 +1,9 @@
+<project name="openbis_standard_technologies" default="dist" basedir="..">
+ <import file="../../screening/build/build.xml" />
+ <import file="../../rtd_phosphonetx/build/build.xml" />
+ <project-classpath name="ecp" classes="${classes}" />
+ <project-classpath name="ecp.gwt" classes="${targets}/www/WEB-INF/classes" />
+
+ <target name="dist" depends="compile">
+ </target>
+</project>
\ No newline at end of file
diff --git a/openbis_standard_technologies/etc/web-client.properties b/openbis_standard_technologies/etc/web-client.properties
new file mode 100644
index 00000000000..febe36110a0
--- /dev/null
+++ b/openbis_standard_technologies/etc/web-client.properties
@@ -0,0 +1,102 @@
+# Enable moving entities to trash (non-permanent deletion).
+# Default value: true
+enable-trash = true
+
+# Default view mode that should be used if user doesn't have it specified in URL.
+# Options: 'NORMAL' (standard mode - default), 'SIMPLE' (readonly mode with simplified GUI)
+#
+#default-view-mode = SIMPLE
+
+# Maximal number of visible columns in tables. Default: 50.
+max-visible-columns = 20
+data-set-types-with-image-overview = MICROSCOPY_IMAGE, .*IMG.*
+
+# Configuration of entity (experiment, sample, data set, material) detail views.
+# Allows to hide chosen sections.
+#
+# Mandatory properties:
+# - view (entity detail view id)
+# - types (list of entity type codes)
+# Optional properties:
+# - hide-sections (list of section ids)
+# - hide-smart-view (removes "Smart View" from Data Set Detail View -> Data View) (generic_dataset_viewer)
+# - hide-file-view (removes "File View" from Data Set Detail View -> Data View) (generic_dataset_viewer)
+# Available sections in entity-detail-views:
+# generic_dataset_viewer
+# data-set-data-section
+# data-set-parents-section
+# data-set-children-section
+# query-section
+# generic_experiment_viewer
+# data-sets-section
+# attachment-section
+# query-section
+# container-sample-section
+# generic_sample_viewer
+# container-sample-section
+# derived-samples-section
+# parent-samples-section
+# data-sets-section
+# attachment-section
+# query-section
+# generic_material_viewer
+# query-section
+#
+# Example:
+#
+#detail-views = sample-view, experiment-view, data-view
+#
+#sample-view.view = generic_sample_viewer
+#sample-view.types = STYPE1, STYPE2
+#sample-view.hide-sections = derived-samples-section, container-sample-section
+#
+#experiment-view.view = generic_experiment_viewer
+#experiment-view.types = ETYPE1, ETYPE2
+#experiment-view.hide-sections = data-sets-section
+#
+#data-view.view = generic_dataset_viewer
+#data-view.types = DSTYPE
+#data-view.hide-smart-view = false
+#data-view.hide-file-view = true
+
+detail-views = plate-or-well-view, image-data-view, image-analysis-data-view, microscopy-dataset-view
+
+#experiment-view.view = generic_experiment_viewer
+#experiment-view.types = SIRNA_HCS
+#experiment-view.hide-sections = data-sets-section, attachment-section
+
+plate-or-well-view.view = generic_sample_viewer
+plate-or-well-view.types = PLATE.*, .*WELL.*
+plate-or-well-view.hide-sections = container-sample-section, derived-samples-section, parent-samples-section
+
+image-data-view.view = generic_dataset_viewer
+image-data-view.types = HCS_IMAGE.*
+image-data-view.hide-sections = data-set-parents-section, data-set-children-section, plate-layout-dataset-section
+image-data-view.hide-smart-view = false
+image-data-view.hide-file-view = true
+
+image-analysis-data-view.view = generic_dataset_viewer
+image-analysis-data-view.types = HCS_ANALYSIS_WELL_FEATURES.*
+image-analysis-data-view.hide-sections = data-set-parents-section, data-set-children-section
+image-analysis-data-view.hide-smart-view = false
+image-analysis-data-view.hide-file-view = true
+
+microscopy-dataset-view.view = generic_dataset_viewer
+microscopy-dataset-view.types = MICROSCOPY_IMAGE, .*IMG.*
+microscopy-dataset-view.hide-sections = data-set-children-section, data-set-parents-section
+microscopy-dataset-view.hide-smart-view = false
+microscopy-dataset-view.hide-file-view = true
+
+technologies = proteomics, screening
+
+# Relative path of cache. Default value is 'cache'.
+proteomics.cache-folder = ../../../web-client-data-cache
+# Minimum free disk space needed for the cache. Default value is 1 GB.
+#proteomics.minimum-free-disk-space-in-MB = 1024
+# Maximum retention time. Data older than this time will be removed from cache. Default value is a week.
+#proteomics.maximum-retention-time-in-days = 7
+
+screening.image-viewer-enabled = true
+# Material properties of the configured type will be rendered as links
+# to the material detail view.
+screening.material-details-property-type = GENE_SYMBOLS
diff --git a/openbis_standard_technologies/resource/server/spring-servlet.xml b/openbis_standard_technologies/resource/server/spring-servlet.xml
new file mode 100644
index 00000000000..45697255499
--- /dev/null
+++ b/openbis_standard_technologies/resource/server/spring-servlet.xml
@@ -0,0 +1,33 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xmlns:tx="http://www.springframework.org/schema/tx"
+ xmlns:context="http://www.springframework.org/schema/context"
+ xsi:schemaLocation="
+ http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
+ http://www.springframework.org/schema/tx
+ http://www.springframework.org/schema/tx/spring-tx-2.5.xsd
+ http://www.springframework.org/schema/context
+ http://www.springframework.org/schema/context/spring-context-2.5.xsd">
+
+ <!--
+ // Note: obviously it is not possible to have a mix of 'urlMappings' and annotated configuration.
+ -->
+ <context:annotation-config />
+
+ <context:component-scan base-package="ch.systemsx.cisd.openbis" use-default-filters="false">
+ <context:include-filter type="annotation"
+ expression="org.springframework.stereotype.Controller" />
+ </context:component-scan>
+
+ <!--
+ // Commons-based implementation of the MultipartResolver interface.
+ // Needs 'commons-fileupload' library.
+ -->
+ <bean id="multipartResolver"
+ class="org.springframework.web.multipart.commons.CommonsMultipartResolver">
+ <!-- Default is 10240 (10kB). Set to 1MB (1048576). -->
+ <property name="maxInMemorySize" value="1048576" />
+ </bean>
+</beans>
diff --git a/openbis_standard_technologies/resource/server/web.xml b/openbis_standard_technologies/resource/server/web.xml
new file mode 100644
index 00000000000..c0b59c17bee
--- /dev/null
+++ b/openbis_standard_technologies/resource/server/web.xml
@@ -0,0 +1,30 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE web-app [
+ <!ENTITY common SYSTEM "web-common.xml">
+ <!ENTITY biscommon SYSTEM "bis-common.xml">
+]>
+<web-app>
+
+ <display-name>openBIS</display-name>
+ <description>openBIS server</description>
+
+ &common;
+
+ <context-param>
+ <param-name>contextConfigLocation</param-name>
+ <param-value>classpath:standard-technologies-applicationContext.xml</param-value>
+ <description>File for Spring beans.</description>
+ </context-param>
+
+ <context-param>
+ <param-name>infoClass</param-name>
+ <param-value>ch.systemsx.cisd.openbis.BuildAndEnvironmentInfo</param-value>
+ </context-param>
+
+ &biscommon;
+
+ <!--
+ // Additional servlets
+ -->
+
+</web-app>
diff --git a/openbis_standard_technologies/source/java/.gitignore b/openbis_standard_technologies/source/java/.gitignore
deleted file mode 100644
index e69de29bb2d..00000000000
diff --git a/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBIS.gwt.xml b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBIS.gwt.xml
new file mode 100644
index 00000000000..f15126d1e83
--- /dev/null
+++ b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBIS.gwt.xml
@@ -0,0 +1,21 @@
+<module>
+ <inherits name='ch.systemsx.cisd.openbis.OpenBIS-without-entry-point'/>
+
+ <!--
+ // Application entry point
+ -->
+ <entry-point class='ch.systemsx.cisd.openbis.client.web.client.application.StandardClient' />
+
+ <script src="proteomics-dictionary.js"/>
+ <public path="plugin/proteomics/client/web/public"/>
+ <source path="plugin/proteomics/client/web/client"/>
+ <source path="plugin/proteomics/shared/basic" />
+
+ <script src="screening-dictionary.js"/>
+ <public path="plugin/screening/client/web/public"/>
+ <source path="plugin/screening/client/web/client"/>
+ <source path="plugin/screening/shared/basic" />
+
+ <source path="client/web/client"/>
+ <public path="client/web/public"/>
+</module>
\ No newline at end of file
diff --git a/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISFirefox.gwt.xml b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISFirefox.gwt.xml
new file mode 100644
index 00000000000..6f6e396e1ad
--- /dev/null
+++ b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISFirefox.gwt.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE module PUBLIC "-//Google Inc.//DTD Google Web Toolkit 1.7.1//EN" "http://google-web-toolkit.googlecode.com/svn/tags/1.7.1/distro-source/core/src/gwt-module.dtd">
+<module rename-to="ch.systemsx.cisd.openbis.OpenBIS">
+ <inherits name='ch.systemsx.cisd.openbis.OpenBIS-without-entry-point' />
+ <set-property name="user.agent" value="gecko1_8" />
+
+ <entry-point class='ch.systemsx.cisd.openbis.client.web.client.application.StandardClient' />
+
+ <script src="proteomics-dictionary.js"/>
+ <public path="plugin/proteomics/client/web/public"/>
+ <source path="plugin/proteomics/client/web/client"/>
+ <source path="plugin/proteomics/shared/basic" />
+
+ <script src="screening-dictionary.js"/>
+ <public path="plugin/screening/client/web/public"/>
+ <source path="plugin/screening/client/web/client"/>
+ <source path="plugin/screening/shared/basic" />
+
+ <source path="client/web/client"/>
+ <public path="client/web/public"/>
+</module>
diff --git a/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISSafari.gwt.xml b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISSafari.gwt.xml
new file mode 100644
index 00000000000..56d69335f62
--- /dev/null
+++ b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/OpenBISSafari.gwt.xml
@@ -0,0 +1,21 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<!DOCTYPE module PUBLIC "-//Google Inc.//DTD Google Web Toolkit 1.7.1//EN" "http://google-web-toolkit.googlecode.com/svn/tags/1.7.1/distro-source/core/src/gwt-module.dtd">
+<module rename-to="ch.systemsx.cisd.openbis.OpenBIS">
+ <inherits name='ch.systemsx.cisd.openbis.OpenBIS-without-entry-point' />
+ <set-property name="user.agent" value="safari" />
+
+ <entry-point class='ch.systemsx.cisd.openbis.client.web.client.application.StandardClient' />
+
+ <script src="proteomics-dictionary.js"/>
+ <public path="plugin/proteomics/client/web/public"/>
+ <source path="plugin/proteomics/client/web/client"/>
+ <source path="plugin/proteomics/shared/basic" />
+
+ <script src="screening-dictionary.js"/>
+ <public path="plugin/screening/client/web/public"/>
+ <source path="plugin/screening/client/web/client"/>
+ <source path="plugin/screening/shared/basic" />
+
+ <source path="client/web/client"/>
+ <public path="client/web/public"/>
+</module>
diff --git a/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/client/application/StandardClient.java b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/client/application/StandardClient.java
new file mode 100644
index 00000000000..36731b5080f
--- /dev/null
+++ b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/client/application/StandardClient.java
@@ -0,0 +1,53 @@
+/*
+ * Copyright 2012 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.systemsx.cisd.openbis.client.web.client.application;
+
+import ch.systemsx.cisd.openbis.generic.client.web.client.ICommonClientServiceAsync;
+import ch.systemsx.cisd.openbis.generic.client.web.client.application.Client;
+import ch.systemsx.cisd.openbis.generic.client.web.client.application.IViewContext;
+import ch.systemsx.cisd.openbis.generic.client.web.client.application.plugin.DefaultClientPluginFactoryProvider;
+import ch.systemsx.cisd.openbis.generic.client.web.client.application.plugin.IClientPluginFactoryProvider;
+
+/**
+ * Client for standard set of technologies.
+ *
+ * @author Franz-Josef Elmer
+ */
+public class StandardClient extends Client
+{
+ private static final class ClientPluginFactoryProvider extends
+ DefaultClientPluginFactoryProvider
+ {
+ ClientPluginFactoryProvider(IViewContext<ICommonClientServiceAsync> originalViewContext)
+ {
+ super(originalViewContext);
+ registerPluginFactory(new ch.systemsx.cisd.openbis.plugin.proteomics.client.web.client.application.ClientPluginFactory(
+ originalViewContext));
+ registerPluginFactory(new ch.systemsx.cisd.openbis.plugin.screening.client.web.client.application.ClientPluginFactory(
+ originalViewContext));
+ }
+
+ }
+
+ @Override
+ protected IClientPluginFactoryProvider createPluginFactoryProvider(
+ final IViewContext<ICommonClientServiceAsync> commonContext)
+ {
+ return new ClientPluginFactoryProvider(commonContext);
+ }
+
+}
diff --git a/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/public/index.html b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/public/index.html
new file mode 100644
index 00000000000..e788f703925
--- /dev/null
+++ b/openbis_standard_technologies/source/java/ch/systemsx/cisd/openbis/client/web/public/index.html
@@ -0,0 +1,59 @@
+<!DOCTYPE html>
+<html>
+<head>
+<title>openBIS - Biology Information System</title>
+
+<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
+<!-- force IE to go to document mode IE8 standards (and avoid the dreadful quirks-mode) -->
+<meta http-equiv="X-UA-Compatible" content="IE=edge" >
+
+<link rel="shortcut icon" href="images/favicon.ico" />
+<link rel="icon" type="image/png" href="images/favicon.png" />
+<link rel="stylesheet" type="text/css" href="resources/css/gxt-all.css" />
+<link rel="stylesheet" type="text/css" href="resources/css/debug-panel.css" />
+
+<!--
+// This script loads your compiled module. If you add any GWT meta tags, they must be added before this line.
+-->
+<script language="javascript"
+ src="ch.systemsx.cisd.openbis.OpenBIS.nocache.js"></script>
+
+<!-- This snippet should be automatically included in all the HTML that wishes to use the debug panel. -->
+<script type="text/javascript" language="javascript">
+ var stats = window.__stats = [];
+ window.__gwtStatsEvent = function(evt) {
+ stats[stats.length] = evt;
+ var listener = window.__stats_listener;
+ listener && listener(evt);
+ return true;
+ }
+</script>
+
+</head>
+<!--
+// The body can have arbitrary html, or you can leave the body empty if you want to create a completely dynamic ui.
+-->
+<body>
+<!-- Required by IE (GWT 1.7) -->
+<iframe id="__gwt_historyFrame" style="width: 0; height: 0; border: 0"></iframe>
+<div id="openbis_login_div" style="visibility: hidden">
+<form id="openbis_login_form" method="post" action="javascript:;">
+<table cellspacing="5">
+ <tbody>
+ <tr style="padding-bottom: 5px">
+ <td><span>User:</span></td>
+ <td><input type="text" id="openbis_login_username"
+ name="openbis-username" style="width: 150px;"></td>
+ </tr>
+ <tr style="padding-bottom: 5px">
+ <td><span>Password:</span></td>
+ <td><input type="password" id="openbis_login_password"
+ name="openbis-password" style="width: 150px;"></td>
+ </tr>
+ </tbody>
+</table>
+<input style="margin-left: 200px" type="submit" id="openbis_login_submit" value="Login">
+</form>
+</div>
+</body>
+</html>
diff --git a/openbis_standard_technologies/source/java/service.properties b/openbis_standard_technologies/source/java/service.properties
new file mode 100644
index 00000000000..85d9d98fbbf
--- /dev/null
+++ b/openbis_standard_technologies/source/java/service.properties
@@ -0,0 +1,90 @@
+authentication-service = dummy-authentication-service
+
+# The time after which an inactive session is expired by the service (in minutes).
+session-timeout = 720
+
+# Authorization
+# Supported: 'no-authorization' and 'active-authorization'
+authorization-component-factory = active-authorization
+
+script-folder = ../openbis/source/
+
+# Supported: currently only 'postgresql' is supported
+database.engine = postgresql
+database.create-from-scratch = false
+# For debugging set this value to true.
+database.script-single-step-mode = false
+database.url-host-part =
+database.kind = standard_technologies
+database.owner =
+database.owner-password =
+database.admin-user =
+database.admin-password =
+
+proteomics.database.engine = postgresql
+proteomics.database.create-from-scratch = false
+proteomics.database.script-single-step-mode = false
+proteomics.database.url-host-part =
+proteomics.database.basic-name = proteomics
+proteomics.database.kind = dev
+proteomics.database.owner =
+proteomics.database.owner-password =
+proteomics.database.admin-user =
+proteomics.database.admin-password =
+proteomics.script-folder = ../rtd_phosphonetx/source/sql/proteomics
+
+data-source-provider = dss-based-data-source-provider
+
+dss-based-data-source-provider.data-store-servers = dss-screening, my-dss
+dss-based-data-source-provider.dss-screening.database-driver = org.postgresql.Driver
+dss-based-data-source-provider.dss-screening.database-url = jdbc:postgresql://localhost/imaging_dev
+dss-based-data-source-provider.my-dss. = dss-based-data-source-provider.dss-screening.
+
+crowd.service.host = crowd.systemsx.ch
+crowd.service.port = 8443
+crowd.application.name = lims
+crowd.application.password =
+
+mail.from = openbis@localhost
+mail.smtp.host = file://targets/email
+mail.smtp.user = user
+mail.smtp.password = password
+
+# The database instance local unique identifier. Used when the new database is created.
+database-instance = CISD
+
+# The URL of the CIFEX server
+cifex-url = https://cifex.ethz.ch:443
+
+trusted-cross-origin-domains= *
+
+# Hibernate Search
+# The working directory.
+hibernate.search.index-base = ./targets/indices_${database.kind}
+# One of NO_INDEX, SKIP_IF_MARKER_FOUND, INDEX_FROM_SCRATCH.
+# If not specified, default (SKIP_IF_MARKER_FOUND) is taken.
+hibernate.search.index-mode = SKIP_IF_MARKER_FOUND
+# Defines the maximum number of elements indexed before flushing the transaction-bound queue.
+# Default is 1000.
+hibernate.search.batch-size = 1000
+# Maximum number of search results
+hibernate.search.maxResults = 100000
+# If 'async', the update of indices will be done in a separate thread.
+hibernate.search.worker.execution=async
+
+web-client-configuration-file = etc/web-client.properties
+
+# Database Configurations for Query module
+query-databases = 1, 2
+
+1.label = openBIS meta data
+1.data-space = CISD
+1.database-driver = org.postgresql.Driver
+1.database-url = jdbc:postgresql://localhost/openbis_${database.kind}
+#1.database-username =
+#1.database-pasword =
+
+2.label = Protein Data
+2.creator-minimal-role = SPACE_USER
+2.database-driver = org.postgresql.Driver
+2.database-url = jdbc:postgresql://localhost/${proteomics.database.basic-name}_${proteomics.database.kind}
diff --git a/openbis_standard_technologies/source/java/standard-technologies-applicationContext.xml b/openbis_standard_technologies/source/java/standard-technologies-applicationContext.xml
new file mode 100644
index 00000000000..4e3bfb18d5e
--- /dev/null
+++ b/openbis_standard_technologies/source/java/standard-technologies-applicationContext.xml
@@ -0,0 +1,24 @@
+<?xml version="1.0" encoding="UTF-8"?>
+<beans xmlns="http://www.springframework.org/schema/beans"
+ xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
+ xmlns:tx="http://www.springframework.org/schema/tx"
+ xmlns:plugins="http://www.springframework.org/schema/context"
+ xsi:schemaLocation="http://www.springframework.org/schema/beans
+ http://www.springframework.org/schema/beans/spring-beans-2.5.xsd
+ http://www.springframework.org/schema/tx
+ http://www.springframework.org/schema/tx/spring-tx-2.5.xsd
+ http://www.springframework.org/schema/context
+ http://www.springframework.org/schema/context/spring-context-2.5.xsd">
+
+ <import resource="applicationContext.xml"/>
+ <import resource="proteomics-plugin-applicationContext.xml"/>
+ <import resource="screening-plugin-applicationContext.xml"/>
+
+ <plugins:annotation-config />
+
+ <plugins:component-scan base-package="ch.systemsx.cisd.openbis">
+ <plugins:exclude-filter type="annotation"
+ expression="org.springframework.stereotype.Controller" />
+ </plugins:component-scan>
+
+</beans>
\ No newline at end of file
diff --git a/openbis_standard_technologies/sourceTest/java/tests.xml b/openbis_standard_technologies/sourceTest/java/tests.xml
new file mode 100644
index 00000000000..7e8e25808d1
--- /dev/null
+++ b/openbis_standard_technologies/sourceTest/java/tests.xml
@@ -0,0 +1,13 @@
+<suite name="All" verbose="2" >
+ <test name="All" annotations="JDK">
+ <groups>
+ <run>
+ <exclude name="broken" />
+ </run>
+ </groups>
+ <packages>
+ <package name="ch.systemsx.cisd.openbis.plugin.proteomics.*" />
+ <package name="ch.systemsx.cisd.openbis.plugin.screening.*" />
+ </packages>
+ </test>
+</suite>
--
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