From 942c6acbb7534321b753735dd2bc2652bc6a6975 Mon Sep 17 00:00:00 2001
From: juanf <juanf>
Date: Wed, 5 Nov 2014 10:19:09 +0000
Subject: [PATCH] SSDM-1078 : PAPER - Provide sensible defaults -
Implementation
SVN: 32735
---
.../newbrowser/1/as/initialize-master-data.py | 31 +++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py b/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
index 5492a745934..a50e4181827 100644
--- a/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
+++ b/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
@@ -526,3 +526,34 @@ createSampleTypeWithProperties("PLASMID", "", [
["NOTES", "Comments", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes"],
["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
]);
+
+createSampleTypeWithProperties("BACTERIA", "", [
+ ["BACTERIA_STRAIN_NAME", "General", "Bacteria strain name", DataType.VARCHAR, None, "Bacterial strain name"],
+ ["OWNER", "General", "Owner", DataType.CONTROLLEDVOCABULARY, "OWNER", "Who produced/owned the sample"],
+ ["OWNER_NUMBER", "General", "Owner number", DataType.MULTILINE_VARCHAR, None, "Owner number"],
+ ["BACTERIA_GENOTYPE", "Genotype", "Bacteria genotype", DataType.MULTILINE_VARCHAR, None, "Bacterial genotype"],
+ ["MARKERS", "Genotype", "Markers", DataType.MULTILINE_VARCHAR, None, "Markers available in the strain for further genetic modifications"],
+ ["ORIGIN", "Origin", "Origin", DataType.CONTROLLEDVOCABULARY, "ORIGIN", "How the strain/cell line was produced"],
+ ["STRAIN_CHECK", "Origin", "Strain Check", DataType.CONTROLLEDVOCABULARY, "CHECK", "Check done to verify the modifications introduced in the strain"],
+ ["SOURCE", "Origin", "Source", DataType.VARCHAR, None, "Source from where the construct/strain/cell line obtained or purchased, if it was not produced in the lab"],
+ ["PUBLICATION", "Comments", "Publication", DataType.MULTILINE_VARCHAR, None, "Publication from where the information was first found OR technical sheet given by the manufacturer"],
+ ["NOTES", "Comments", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes"],
+ ["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
+]);
+
+createSampleTypeWithProperties("YEAST", "", [
+ ["YEAST_STRAIN_NAME", "General", "Yeast strain name", DataType.MULTILINE_VARCHAR, None, "Yeast strain name"],
+ ["OWNER", "General", "Owner", DataType.CONTROLLEDVOCABULARY, "OWNER", "Who produced/owned the sample"],
+ ["OWNER_NUMBER", "General", "Owner number", DataType.MULTILINE_VARCHAR, None, "Owner number"],
+ ["GENETIC_BACKGROUND", "Genotype", "Genetic Background", DataType.CONTROLLEDVOCABULARY, "GENETIC_BACKGROUND", "Genetic background of the yeast strain"],
+ ["MATING_TYPE", "Genotype", "Mating Type", DataType.CONTROLLEDVOCABULARY, "MATING_TYPE", "Mating type or ploidy of the yeast strain"],
+ ["BACKGROUND-SPECIFIC_MARKERS", "Genotype", "Background-specific markers", DataType.CONTROLLEDVOCABULARY, "BACKGROUND_SPECIFIC_MARKERS", "Background-specific markers available in the strain for further genetic modifications"],
+ ["COMMON_MARKERS", "Genotype", "Common markers", DataType.CONTROLLEDVOCABULARY, "COMMON_MARKERS", "Common markers available in the strain for further genetic modifications"],
+ ["ENDOGENOUS_PLASMID", "Genotype", "Endogenous 2micron plasmid in yeast", DataType.CONTROLLEDVOCABULARY, "ENDOGENOUS_PLASMID", "Presence of an endogenous cir 2micron plasmid"],
+ ["ORIGIN", "Origin", "Origin", DataType.CONTROLLEDVOCABULARY, "ORIGIN", "How the strain/cell line was produced"],
+ ["STRAIN_CHECK", "Origin", "Strain Check", DataType.CONTROLLEDVOCABULARY, "CHECK", "Check done to verify the modifications introduced in the strain"],
+ ["SOURCE", "Origin", "Source", DataType.VARCHAR, None, "Source from where the construct/strain/cell line obtained or purchased, if it was not produced in the lab"],
+ ["PUBLICATION", "Comments", "Publication", DataType.MULTILINE_VARCHAR, None, "Publication from where the information was first found OR technical sheet given by the manufacturer"],
+ ["NOTES", "Comments", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes"],
+ ["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
+]);
--
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