From 8ab883126d4ad04080f986a2cdc2a558221abec7 Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Thu, 5 Feb 2015 08:21:38 +0000
Subject: [PATCH] bugfix: Pool having set a 'NOINDEX' instead of an 'empty'
index is now ignored in the Sample Sheet Creation
SVN: 33393
---
deep_sequencing_unit/source/Jython/createSampleSheet.py | 6 +++---
1 file changed, 3 insertions(+), 3 deletions(-)
diff --git a/deep_sequencing_unit/source/Jython/createSampleSheet.py b/deep_sequencing_unit/source/Jython/createSampleSheet.py
index e9298777d15..4165e800ac8 100644
--- a/deep_sequencing_unit/source/Jython/createSampleSheet.py
+++ b/deep_sequencing_unit/source/Jython/createSampleSheet.py
@@ -406,11 +406,11 @@ def createHiseqSampleSheet(parentDict, flowCellDict, samplesPerLaneDict, flowCel
index = ''
dualIndex = False
lane = parentDict[key]['LANE'][-1:]
-
- if index1Name in parentDict[key] and indexRead1Length > 0:
+
+ if index1Name in parentDict[key] and indexRead1Length > 0 and (parentDict[key])[index1Name] != 'NOINDEX':
index = parentDict[key][index1Name][0:indexRead1Length]
- if index2Name in parentDict[key] and indexRead2Length > 0:
+ if index2Name in parentDict[key] and indexRead2Length > 0 and (parentDict[key])[index2Name] != 'NOINDEX':
index = index + configMap['indexSeparator'] + parentDict[key][index2Name][0:indexRead2Length]
dualIndex = True
--
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