diff --git a/api-openbis-javascript/src/v3/openbis.js b/api-openbis-javascript/src/v3/openbis.js
index 1be2c4762b2bfc0a0eab3b857bd9aa61ac7731a8..fa10067c89bf56c87b42deec2e9d09ca6555fdf3 100644
--- a/api-openbis-javascript/src/v3/openbis.js
+++ b/api-openbis-javascript/src/v3/openbis.js
@@ -2412,7 +2412,12 @@ define([ 'jquery', 'util/Json', 'as/dto/datastore/search/DataStoreSearchCriteria
this.getDataStoreFacade = function() {
var dataStoreCodes = [];
for (var i = 0; i < arguments.length; i++) {
- dataStoreCodes.push(arguments[i]);
+ var argument = arguments[i]
+ if(Array.isArray(argument)) {
+ Array.prototype.push.apply(dataStoreCodes, argument)
+ } else {
+ dataStoreCodes.push(argument);
+ }
}
return new dataStoreFacade(this, dataStoreCodes);
}
diff --git a/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/OpenBISExtension.java b/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/OpenBISExtension.java
index 2035b9ce79d1433ec3ba340f84fc22528eaeaf20..808cf23d978442ac335676f16c65aab535b6b5cf 100644
--- a/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/OpenBISExtension.java
+++ b/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/OpenBISExtension.java
@@ -286,14 +286,7 @@ public class OpenBISExtension extends Extension
}
TsType tsMethodParameterType = resolveType(processingContext, tsBean, methodParameter.getParameterizedType());
-
- if (method.isVarArgs() && methodParameterIndex == method.getParameters().length - 1)
- {
- tsMethodParameters.add(new TsParameterModel("..." + methodParameter.getName(), tsMethodParameterType));
- } else
- {
- tsMethodParameters.add(new TsParameterModel(methodParameter.getName(), tsMethodParameterType));
- }
+ tsMethodParameters.add(new TsParameterModel(methodParameter.getName(), tsMethodParameterType));
}
TsType tsMethodReturnType = resolveType(processingContext, tsBean, method.getGenericReturnType());
diff --git a/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/dto/OpenBISJavaScriptFacade.java b/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/dto/OpenBISJavaScriptFacade.java
index 889f87bb7672cc6c02bdfb7352beafffd4062a94..6aacab7c077ffc1880f4037f7ff5b72a87f073af 100644
--- a/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/dto/OpenBISJavaScriptFacade.java
+++ b/api-openbis-typescript/source/java/ch/ethz/sis/openbis/generic/typescript/dto/OpenBISJavaScriptFacade.java
@@ -267,7 +267,7 @@ public class OpenBISJavaScriptFacade implements IApplicationServerApi
}
@TypeScriptMethod(sessionToken = false, async = false)
- public OpenBISJavaScriptDSSFacade getDataStoreFacade(String... dataStoreCodes){
+ public OpenBISJavaScriptDSSFacade getDataStoreFacade(String[] dataStoreCodes){
return null;
}
diff --git a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/main.js b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/main.js
index 045abf8c386502889b373a9464041dcad20cb825..50d2c7db1721476585b4c4fa36a0e7f66db7b28e 100644
--- a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/main.js
+++ b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/main.js
@@ -2,7 +2,7 @@ define([
"test-compiled/test-login",
"test/test-jsVSjava",
"test-compiled/test-create",
- "test/test-update",
+ "test-compiled/test-update",
"test-compiled/test-search",
"test/test-freezing",
diff --git a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-create.ts b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-create.ts
index cb290fd81f20743d20dcb3f7afe0410d4d43600b..969775c2e7400e4b26c1c3c0b0a3605ae3d557a3 100644
--- a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-create.ts
+++ b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-create.ts
@@ -798,7 +798,7 @@ exports.default = new Promise((resolve) => {
f2.setFileLength(42)
f2.setChecksumCRC32(123456)
creation.setFileMetadata([f1, f2])
- return facade.getDataStoreFacade("DSS1", "DSS2").createDataSets([creation])
+ return facade.getDataStoreFacade(["DSS1", "DSS2"]).createDataSets([creation])
})
})
}
@@ -816,7 +816,7 @@ exports.default = new Promise((resolve) => {
var criteria = new dtos.DataSetFileSearchCriteria()
criteria.withDataSet().withCode().thatEquals(dataSet.getCode())
facade
- .getDataStoreFacade("DSS1")
+ .getDataStoreFacade(["DSS1"])
.searchFiles(criteria, c.createDataSetFileFetchOptions())
.then(function (result) {
var files = result.getObjects()
@@ -1530,7 +1530,7 @@ exports.default = new Promise((resolve) => {
'------WebKitFormBoundary7MA4YWxkTrZu0gW\r\nContent-Disposition: form-data; name="file"; filename="filePath/file2.txt"\r\nContent-Type: text/plain\r\n\r\n\r\ncontent2\r\n' +
"------WebKitFormBoundary7MA4YWxkTrZu0gW--"
- var dataStoreFacade = facade.getDataStoreFacade("DSS1")
+ var dataStoreFacade = facade.getDataStoreFacade(["DSS1"])
return dataStoreFacade.createDataSetUpload("UNKNOWN").then(function (upload) {
return $.ajax({
@@ -1557,7 +1557,7 @@ exports.default = new Promise((resolve) => {
var fCheck = function (dataSet: openbis.DataSet, facade: openbis.openbis) {
return c.waitUntilIndexed(facade, dataSet.getCode(), 10000).then(function () {
- var dataStoreFacade = facade.getDataStoreFacade("DSS1")
+ var dataStoreFacade = facade.getDataStoreFacade(["DSS1"])
var criteria = new dtos.DataSetFileSearchCriteria()
criteria.withDataSet().withCode().thatEquals(dataSet.getCode())
diff --git a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-search.ts b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-search.ts
index 5bdcf28f8e3ff87aaf6ff62903c05a3216b5d490..360be4e5d51d5e214bde956e8454e814e59ff037 100644
--- a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-search.ts
+++ b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-search.ts
@@ -2709,7 +2709,7 @@ exports.default = new Promise((resolve) => {
var fSearch = function (facade: openbis.openbis) {
return facade
- .getDataStoreFacade("I_DONT_EXIST", "ME_NEITHER")
+ .getDataStoreFacade(["I_DONT_EXIST", "ME_NEITHER"])
.searchFiles(new dtos.DataSetFileSearchCriteria(), c.createDataSetFileFetchOptions())
}
@@ -2733,7 +2733,7 @@ exports.default = new Promise((resolve) => {
// at DSS2
dataSetCriteria.withCode().thatEquals("20130415093804724-403")
- return facade.getDataStoreFacade("DSS1").searchFiles(criteria, c.createDataSetFileFetchOptions())
+ return facade.getDataStoreFacade(["DSS1"]).searchFiles(criteria, c.createDataSetFileFetchOptions())
}
var fCheck = function (facade: openbis.openbis, files: openbis.DataSetFile[]) {
@@ -2761,7 +2761,7 @@ exports.default = new Promise((resolve) => {
// at DSS2
dataSetCriteria.withCode().thatEquals("20130415093804724-403")
- return facade.getDataStoreFacade("DSS1", "DSS2").searchFiles(criteria, c.createDataSetFileFetchOptions())
+ return facade.getDataStoreFacade(["DSS1", "DSS2"]).searchFiles(criteria, c.createDataSetFileFetchOptions())
}
var fCheck = function (facade: openbis.openbis, files: openbis.DataSetFile[]) {
diff --git a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-update.js b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-update.js
deleted file mode 100644
index c343c1289891f63f8a4e4abe4e8c1d4c12bbf254..0000000000000000000000000000000000000000
--- a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-update.js
+++ /dev/null
@@ -1,1791 +0,0 @@
-define([ 'jquery', 'underscore', 'openbis', 'test/openbis-execute-operations', 'test/common', 'test/dtos' ], function($, _, openbis, openbisExecuteOperations, common, dtos) {
- var executeModule = function(moduleName, facade, dtos) {
- QUnit.module(moduleName);
-
- var testUpdate = function(c, fCreate, fUpdate, fFind, fCheck, fCheckError) {
- c.start();
-
- var ctx = {
- facade : null,
- permIds : null
- };
- c.login(facade).then(function() {
- ctx.facade = facade;
- return fCreate(facade)
- }).then(function(permIds) {
- ctx.permIds = permIds;
- c.assertTrue(permIds != null && permIds.length == 1, "Entity was created");
- return fFind(ctx.facade, permIds[0])
- }).then(function(entity) {
- c.assertNotNull(entity, "Entity can be found");
- return fUpdate(ctx.facade, ctx.permIds[0])
- }).then(function() {
- c.ok("Entity was updated");
- return fFind(ctx.facade, ctx.permIds[0])
- }).then(function(entity) {
- if (fCheck) {
- fCheck(entity);
- }
- c.finish();
- }).fail(function(error) {
- if (fCheckError) {
- fCheckError(error.message, ctx.permIds[0]);
- } else {
- c.fail(error.message);
- }
- c.finish();
- });
- }
-
- QUnit.test("updateSpaces()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("SPACE");
-
- var fCreate = function(facade) {
- var creation = new dtos.SpaceCreation();
- creation.setCode(code);
- creation.setDescription("test description");
- return facade.createSpaces([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SpaceUpdate();
- update.setSpaceId(permId);
- update.setDescription("test description 2");
- return facade.updateSpaces([ update ]);
- }
-
- var fCheck = function(space) {
- c.assertEqual(space.getCode(), code, "Code");
- c.assertEqual(space.getDescription(), "test description 2", "Description");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSpace, fCheck);
- });
-
- QUnit.test("updateProjects() added attachments", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("PROJECT");
-
- var fCreate = function(facade) {
- var projectCreation = new dtos.ProjectCreation();
- projectCreation.setSpaceId(new dtos.SpacePermId("TEST"));
- projectCreation.setCode(code);
- projectCreation.setDescription("JS test project");
- return facade.createProjects([ projectCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var projectUpdate = new dtos.ProjectUpdate();
- projectUpdate.setProjectId(permId);
- projectUpdate.setSpaceId(new dtos.SpacePermId("PLATONIC"));
- attachmentCreation = new dtos.AttachmentCreation();
- attachmentCreation.setFileName("test_file");
- attachmentCreation.setTitle("test_title");
- attachmentCreation.setDescription("test_description");
- attachmentCreation.setContent(btoa("hello world"));
- projectUpdate.getAttachments().add([ attachmentCreation ]);
- return facade.updateProjects([ projectUpdate ]);
- }
-
- var fCheck = function(project) {
- c.assertEqual(project.getCode(), code, "Project code");
- c.assertEqual(project.getSpace().getCode(), "PLATONIC", "Space code");
- c.assertEqual(project.getDescription(), "JS test project", "Description");
- var attachments = project.getAttachments();
- c.assertEqual(attachments[0].fileName, "test_file", "Attachment file name");
- c.assertEqual(attachments[0].title, "test_title", "Attachment title");
- c.assertEqual(attachments[0].description, "test_description", "Attachment description");
- c.assertEqual(atob(attachments[0].content), "hello world", "Attachment content");
- c.assertEqual(attachments.length, 1, "Number of attachments");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findProject, fCheck);
- });
-
- QUnit.test("updateProjects() changed attributes", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("PROJECT");
-
- var fCreate = function(facade) {
- var projectCreation = new dtos.ProjectCreation();
- projectCreation.setSpaceId(new dtos.SpacePermId("TEST"));
- projectCreation.setCode(code);
- projectCreation.setDescription("JS test project");
- return facade.createProjects([ projectCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var projectUpdate = new dtos.ProjectUpdate();
- projectUpdate.setProjectId(permId);
- projectUpdate.setDescription("test_description");
- return facade.updateProjects([ projectUpdate ]);
- }
-
- var fCheck = function(project) {
- c.assertEqual(project.getCode(), code, "Project code");
- c.assertEqual(project.getSpace().getCode(), "TEST", "Space code");
- c.assertEqual(project.getDescription(), "test_description", "Description");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findProject, fCheck);
- });
-
- QUnit.test("updateProjects() removed space", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("PROJECT");
-
- var fCreate = function(facade) {
- var projectCreation = new dtos.ProjectCreation();
- projectCreation.setSpaceId(new dtos.SpacePermId("TEST"));
- projectCreation.setCode(code);
- projectCreation.setDescription("JS test project");
- return facade.createProjects([ projectCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var projectUpdate = new dtos.ProjectUpdate();
- projectUpdate.setProjectId(permId);
- projectUpdate.setSpaceId(null);
- return facade.updateProjects([ projectUpdate ]);
- }
-
- var fCheckError = function(error, permId) {
- c.assertContains(error, "Space id cannot be null", "Error");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findProject, null, fCheckError);
- });
-
- QUnit.test("updateExperimentTypes()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("EXPERIMENT_TYPE");
-
- var fCreate = function(facade) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setInitialValueForExistingEntities("initial value");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
-
- var creation = new dtos.ExperimentTypeCreation();
- creation.setCode(code);
- creation.setDescription("a new description");
- creation.setPropertyAssignments([ assignmentCreation ]);
- creation.setMetaData({"experiment_type_update":"old_value", "experiment_type_delete":"del_value"});
-
- return facade.createExperimentTypes([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section 2");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("1.0");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
- var update = new dtos.ExperimentTypeUpdate();
- update.setTypeId(permId);
- update.setDescription("another new description");
- update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"));
- update.getPropertyAssignments().set([ assignmentCreation ]);
- update.getMetaData().put("experiment_type_update", "new_value");
- update.getMetaData().add({"experiment_type_add":"add_value"});
- update.getMetaData().remove("experiment_type_delete");
- return facade.updateExperimentTypes([ update ]);
- }
-
- var fCheck = function(type) {
- c.assertEqual(type.getCode(), code, "Type code");
- c.assertEqual(type.getPermId().getPermId(), code, "Type perm id");
- c.assertEqual(type.getDescription(), "another new description", "Description");
-
- c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count");
-
- var assignment = type.getPropertyAssignments()[0];
-
- c.assertEqual(assignment.getSection(), "test section 2", "Assignment section");
- c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal");
- c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code");
- c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory");
- c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView");
- c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms");
-
- var metaData = type.getMetaData();
- c.assertEqual(metaData["experiment_type_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["experiment_type_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["experiment_type_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExperimentType, fCheck);
- });
-
- QUnit.test("updateExperiments() changed attributes + added tag + added attachment", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("EXPERIMENT");
-
- var fCreate = function(facade) {
- var experimentCreation = new dtos.ExperimentCreation();
- experimentCreation.setCode(code);
- experimentCreation.setTypeId(new dtos.EntityTypePermId("HT_SEQUENCING"));
- experimentCreation.setProperty("EXPERIMENT_DESIGN", "EXPRESSION");
- experimentCreation.setTagIds([ new dtos.TagCode("CREATE_JSON_TAG") ]);
- experimentCreation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"));
- experimentCreation.setMetaData({"experiment_update":"old_value", "experiment_delete":"del_value"});
- return facade.createExperiments([ experimentCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var experimentUpdate = new dtos.ExperimentUpdate();
- experimentUpdate.setExperimentId(permId);
- experimentUpdate.setProjectId(new dtos.ProjectIdentifier("/PLATONIC/SCREENING-EXAMPLES"));
- experimentUpdate.getTagIds().add(new dtos.TagCode("CREATE_ANOTHER_JSON_TAG"));
- attachmentCreation = new dtos.AttachmentCreation();
- attachmentCreation.setFileName("test_file");
- attachmentCreation.setTitle("test_title");
- attachmentCreation.setDescription("test_description");
- attachmentCreation.setContent(btoa("hello world"));
- experimentUpdate.getAttachments().add([ attachmentCreation ]);
- experimentUpdate.getMetaData().put("experiment_update", "new_value");
- experimentUpdate.getMetaData().add({"experiment_add":"add_value"});
- experimentUpdate.getMetaData().remove("experiment_delete");
- return facade.updateExperiments([ experimentUpdate ]);
- }
-
- var fCheck = function(experiment) {
- c.assertEqual(experiment.getCode(), code, "Experiment code");
- c.assertEqual(experiment.getType().getCode(), "HT_SEQUENCING", "Type code");
- c.assertEqual(experiment.getProject().getCode(), "SCREENING-EXAMPLES", "Project code");
- c.assertEqual(experiment.getProject().getSpace().getCode(), "PLATONIC", "Space code");
- var tags = _.sortBy(experiment.getTags(), "code");
- c.assertEqual(tags[0].code, 'CREATE_ANOTHER_JSON_TAG', "tags");
- c.assertEqual(tags[1].code, 'CREATE_JSON_TAG', "tags");
- c.assertEqual(tags.length, 2, "Number of tags");
- var attachments = experiment.getAttachments();
- c.assertEqual(attachments[0].fileName, "test_file", "Attachment file name");
- c.assertEqual(attachments[0].title, "test_title", "Attachment title");
- c.assertEqual(attachments[0].description, "test_description", "Attachment description");
- c.assertEqual(atob(attachments[0].content), "hello world", "Attachment content");
- c.assertEqual(attachments.length, 1, "Number of attachments");
-
- var metaData = experiment.getMetaData();
- c.assertEqual(metaData["experiment_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["experiment_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["experiment_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck);
- });
-
- QUnit.test("updateExperiments() changed properties + removed tag", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("EXPERIMENT");
-
- var fCreate = function(facade) {
- var experimentCreation = new dtos.ExperimentCreation();
- experimentCreation.setCode(code);
- experimentCreation.setTypeId(new dtos.EntityTypePermId("HT_SEQUENCING"));
- experimentCreation.setProperty("EXPERIMENT_DESIGN", "EXPRESSION");
- experimentCreation.setTagIds([ new dtos.TagCode("CREATE_JSON_TAG") ]);
- experimentCreation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"));
- return facade.createExperiments([ experimentCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var experimentUpdate = new dtos.ExperimentUpdate();
- experimentUpdate.setExperimentId(permId);
- experimentUpdate.setProperty("EXPERIMENT_DESIGN", "OTHER");
- experimentUpdate.getTagIds().remove([ new dtos.TagCode("UNKNOWN_TAG"), new dtos.TagCode("CREATE_JSON_TAG") ]);
- return facade.updateExperiments([ experimentUpdate ]);
- }
-
- var fCheck = function(experiment) {
- c.assertEqual(experiment.getCode(), code, "Experiment code");
- c.assertEqual(experiment.getType().getCode(), "HT_SEQUENCING", "Type code");
- c.assertEqual(experiment.getProject().getCode(), "TEST-PROJECT", "Project code");
- c.assertEqual(experiment.getProject().getSpace().getCode(), "TEST", "Space code");
- var properties = experiment.getProperties();
- c.assertEqual(properties["EXPERIMENT_DESIGN"], "OTHER", "Property EXPERIMENT_DESIGN");
- c.assertEqual(Object.keys(properties), "EXPERIMENT_DESIGN", "Properties");
- c.assertEqual(experiment.getTags().length, 0, "Number of tags");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck);
- });
-
- QUnit.test("updateExperiments() removed project", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("EXPERIMENT");
-
- var fCreate = function(facade) {
- var experimentCreation = new dtos.ExperimentCreation();
- experimentCreation.setCode(code);
- experimentCreation.setTypeId(new dtos.EntityTypePermId("HT_SEQUENCING"));
- experimentCreation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"));
- return facade.createExperiments([ experimentCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var experimentUpdate = new dtos.ExperimentUpdate();
- experimentUpdate.setExperimentId(permId);
- experimentUpdate.setProjectId(null);
- return facade.updateExperiments([ experimentUpdate ]);
- }
-
- var fCheckError = function(error, permId) {
- c.assertContains(error, "Project id cannot be null", "Error");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExperiment, null, fCheckError);
- });
-
- QUnit.test("updateExperiment() change property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var experimentTypeCode = c.generateId("EXPERIMENT_TYPE");
- var code = c.generateId("EXPERIMENT");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var experimentTypeCreation = new dtos.ExperimentTypeCreation();
- experimentTypeCreation.setCode(experimentTypeCode);
- experimentTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createExperimentTypes([ experimentTypeCreation ]).then(function(results) {
- var creation = new dtos.ExperimentCreation();
- creation.setTypeId(new dtos.EntityTypePermId(experimentTypeCode));
- creation.setCode(code);
- creation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"));
- creation.setProperty(propertyTypeCode, "20130412140147735-20");
- return facade.createExperiments([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.ExperimentUpdate();
- update.setExperimentId(permId);
- update.setProperty(propertyTypeCode, "20130412140147736-21");
- return facade.updateExperiments([ update ]);
- }
-
- var fCheck = function(experiment) {
- c.assertEqual(experiment.getCode(), code, "Experiment code");
- c.assertEqual(experiment.getType().getCode(), experimentTypeCode, "Type code");
- c.assertEqual(experiment.getProject().getCode(), "TEST-PROJECT", "Project code");
- c.assertEqual(experiment.getProject().getSpace().getCode(), "TEST", "Space code");
- c.assertEqual(experiment.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/PLATE-2", "Sample property");
- c.assertEqual(experiment.getHistory()[0].getPropertyName(), propertyTypeCode, "Previous sample property name");
- c.assertEqual(experiment.getHistory()[0].getPropertyValue(), "20130412140147735-20", "Previous sample property value");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck);
- });
-
- QUnit.test("updateExperiment() change multi-value property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var experimentTypeCode = c.generateId("EXPERIMENT_TYPE");
- var code = c.generateId("EXPERIMENT");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- propertyTypeCreation.setMultiValue(true);
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var experimentTypeCreation = new dtos.ExperimentTypeCreation();
- experimentTypeCreation.setCode(experimentTypeCode);
- experimentTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createExperimentTypes([ experimentTypeCreation ]).then(function(results) {
- var creation = new dtos.ExperimentCreation();
- creation.setTypeId(new dtos.EntityTypePermId(experimentTypeCode));
- creation.setCode(code);
- creation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"));
- creation.setProperty(propertyTypeCode, ["20130412140147735-20", "20130424134657597-433"]);
- return facade.createExperiments([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.ExperimentUpdate();
- update.setExperimentId(permId);
- update.setProperty(propertyTypeCode, "20130412140147736-21");
- return facade.updateExperiments([ update ]);
- }
-
- var fCheck = function(experiment) {
- c.assertEqual(experiment.getCode(), code, "Experiment code");
- c.assertEqual(experiment.getType().getCode(), experimentTypeCode, "Type code");
- c.assertEqual(experiment.getProject().getCode(), "TEST-PROJECT", "Project code");
- c.assertEqual(experiment.getProject().getSpace().getCode(), "TEST", "Space code");
- c.assertEqual(experiment.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/PLATE-2", "Sample property");
-
- var history = experiment.getHistory().filter(x => x.propertyName == propertyTypeCode && x.validTo);
- c.assertEqual(history.length, 2, "Previous sample property name");
- c.assertEqual(history.map(x => x.propertyValue).sort().toString(), ["20130412140147735-20", "20130424134657597-433"].toString(), "Previous sample property value");
-
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck);
- });
-
- QUnit.test("updateSampleTypes()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("SAMPLE_TYPE");
-
- var fCreate = function(facade) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("initial value");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
-
- var creation = new dtos.SampleTypeCreation();
- creation.setCode(code);
- creation.setDescription("a new description");
- creation.setGeneratedCodePrefix("TEST_PREFIX");
- creation.setPropertyAssignments([ assignmentCreation ]);
- creation.setMetaData({"sample_type_update":"old_value", "sample_type_delete":"del_value"});
-
- return facade.createSampleTypes([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section 2");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("1.0");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
- var update = new dtos.SampleTypeUpdate();
- update.setTypeId(permId);
- update.setAutoGeneratedCode(true);
- update.setSubcodeUnique(true);
- update.setDescription("another new description");
- update.setGeneratedCodePrefix("TEST_PREFIX2");
- update.setListable(true);
- update.setShowContainer(true);
- update.setShowParents(true);
- update.setShowParentMetadata(true);
- update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"));
- update.getPropertyAssignments().add([ assignmentCreation ]);
- update.getPropertyAssignments().remove([ new dtos.PropertyAssignmentPermId(permId, new dtos.PropertyTypePermId("DESCRIPTION")) ]);
- update.getMetaData().put("sample_type_update", "new_value");
- update.getMetaData().add({"sample_type_add":"add_value"});
- update.getMetaData().remove("sample_type_delete");
- return facade.updateSampleTypes([ update ]);
- }
-
- var fCheck = function(type) {
- c.assertEqual(type.getCode(), code, "Type code");
- c.assertEqual(type.getPermId().getPermId(), code, "Type perm id");
- c.assertEqual(type.getDescription(), "another new description", "Description");
- c.assertEqual(type.isAutoGeneratedCode(), true, "AutoGeneratedCode");
- c.assertEqual(type.isSubcodeUnique(), true, "SubcodeUnique");
- c.assertEqual(type.getGeneratedCodePrefix(), "TEST_PREFIX2", "GeneratedCodePrefix");
- c.assertEqual(type.isListable(), true, "Listable");
- c.assertEqual(type.isShowContainer(), true, "ShowContainer");
- c.assertEqual(type.isShowParents(), true, "ShowParents");
- c.assertEqual(type.isShowParentMetadata(), true, "ShowParentMetadata");
-
- c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count");
-
- var assignment = type.getPropertyAssignments()[0];
-
- c.assertEqual(assignment.getSection(), "test section 2", "Assignment section");
- c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal");
- c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code");
- c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory");
- c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView");
- c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms");
-
- var metaData = type.getMetaData();
- c.assertEqual(metaData["sample_type_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["sample_type_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["sample_type_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSampleType, fCheck);
- });
-
- QUnit.test("updateSamples()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("SAMPLE");
-
- var fCreate = function(facade) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- creation.setTagIds([ new dtos.TagCode("CREATE_JSON_TAG") ]);
- creation.setMetaData({"sample_update":"old_value", "sample_delete":"del_value"});
- return facade.createSamples([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- update.getTagIds().remove(new dtos.TagCode("CREATE_JSON_TAG"));
- update.getTagIds().add(new dtos.TagCode("CREATE_JSON_TAG_2"));
- update.getTagIds().add(new dtos.TagCode("CREATE_JSON_TAG_3"));
- update.getMetaData().put("sample_update", "new_value");
- update.getMetaData().add({"sample_add":"add_value"});
- update.getMetaData().remove("sample_delete");
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code");
- c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code");
- c.assertObjectsCount(sample.getTags(), 2);
- c.assertObjectsWithValues(sample.getTags(), "code", [ "CREATE_JSON_TAG_2", "CREATE_JSON_TAG_3" ]);
-
- var metaData = sample.getMetaData();
- c.assertEqual(metaData["sample_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["sample_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["sample_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateSamples() turn project sample into a space sample", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("SAMPLE");
-
- var fCreate = function(facade) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- creation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"));
- return facade.createSamples([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- update.setProjectId(null);
- update.setSpaceId(new dtos.SpacePermId("PLATONIC"));
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code");
- c.assertEqual(sample.getIdentifier(), "/PLATONIC/" + code, "Identifier");
- c.assertEqual(sample.getProject(), null, "Project");
- c.assertEqual(sample.getSpace().getCode(), "PLATONIC", "Space code");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateSamples() turn space sample into a project sample", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("SAMPLE");
-
- var fCreate = function(facade) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- return facade.createSamples([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- update.setProjectId(new dtos.ProjectIdentifier("/PLATONIC/SCREENING-EXAMPLES"));
- update.setSpaceId(new dtos.SpacePermId("PLATONIC"));
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code");
- c.assertEqual(sample.getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/" + code, "Identifier");
- c.assertEqual(sample.getProject().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES", "Project");
- c.assertEqual(sample.getSpace().getCode(), "PLATONIC", "Space code");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateSamples() with annotated parent and child", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("SAMPLE");
- var parentId = new dtos.SampleIdentifier("/TEST/TEST-SAMPLE-1");
- var childId = new dtos.SampleIdentifier("/TEST/TEST-PROJECT/TEST-SAMPLE-2");
-
- var fCreate = function(facade) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- creation.setParentIds([ parentId ]);
- creation.setChildIds([ childId ]);
- creation.relationship(parentId).addParentAnnotation("type", "father").addChildAnnotation("type", "daughter");
- creation.relationship(childId).addParentAnnotation("type", "mother").addChildAnnotation("type", "son")
- .addParentAnnotation("color", "red");
- return facade.createSamples([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- var parentRelationShip = update.relationship(parentId);
- parentRelationShip.removeChildAnnotations("type").addChildAnnotation("color", "blue")
- .addParentAnnotation("color", "yellow");
- var childRelationShip = update.relationship(childId);
- childRelationShip.addParentAnnotation("color", "green").removeParentAnnotations("type")
- .addChildAnnotation("color", "black");
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code");
- c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code");
- var parent = sample.getParents()[0];
- c.assertEqual(parent.getIdentifier().getIdentifier(), parentId.getIdentifier(), "Parent");
- var parentRelationship = sample.getParentRelationship(parent.getPermId());
- c.assertEqualDictionary(parentRelationship.getChildAnnotations(), {"color": "blue"}, "Parent -> child annotations");
- c.assertEqualDictionary(parentRelationship.getParentAnnotations(), {"type": "father", "color": "yellow"}, "Parent -> parent annotations");
- var child = sample.getChildren()[0];
- c.assertEqual(child.getIdentifier().getIdentifier(), childId.getIdentifier(), "Child");
- var childRelationship = sample.getChildRelationship(child.getPermId());
- c.assertEqualDictionary(childRelationship.getChildAnnotations(), {"type": "son", "color": "black"}, "Child -> child annotations");
- c.assertEqualDictionary(childRelationship.getParentAnnotations(), {"color": "green"}, "Child -> parent annotations");
-
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateSamples() change property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var sampleTypeCode = c.generateId("SAMPLE_TYPE");
- var code = c.generateId("SAMPLE");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var sampleTypeCreation = new dtos.SampleTypeCreation();
- sampleTypeCreation.setCode(sampleTypeCode);
- sampleTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createSampleTypes([ sampleTypeCreation ]).then(function(results) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId(sampleTypeCode));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- creation.setProperty(propertyTypeCode, "20130412140147735-20");
- return facade.createSamples([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- update.setProperty(propertyTypeCode, "20130412140147736-21");
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), sampleTypeCode, "Type code");
- c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code");
- c.assertEqual(sample.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/PLATE-2", "Sample property");
- c.assertEqual(sample.getHistory()[0].getPropertyName(), propertyTypeCode, "Previous sample property name");
- c.assertEqual(sample.getHistory()[0].getPropertyValue(), "20130412140147735-20", "Previous sample property value");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateSamples() change multi-value property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var sampleTypeCode = c.generateId("SAMPLE_TYPE");
- var code = c.generateId("SAMPLE");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- propertyTypeCreation.setMultiValue(true);
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var sampleTypeCreation = new dtos.SampleTypeCreation();
- sampleTypeCreation.setCode(sampleTypeCode);
- sampleTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createSampleTypes([ sampleTypeCreation ]).then(function(results) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId(sampleTypeCode));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- creation.setProperty(propertyTypeCode, ["20130412140147735-20", "20130424134657597-433"]);
- return facade.createSamples([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- update.setProperty(propertyTypeCode, "20130412140147736-21");
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), sampleTypeCode, "Type code");
- c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code");
- c.assertEqual(sample.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/PLATE-2", "Sample property");
- var history = sample.getHistory().filter(x => x.propertyName == propertyTypeCode && x.validTo);
- c.assertEqual(history.length, 2, "Previous sample property name");
- c.assertEqual(history.map(x => x.propertyValue).sort().toString(), ["20130412140147735-20", "20130424134657597-433"].toString(), "Previous sample property value");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateSamples() remove property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var sampleTypeCode = c.generateId("SAMPLE_TYPE");
- var code = c.generateId("SAMPLE");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var sampleTypeCreation = new dtos.SampleTypeCreation();
- sampleTypeCreation.setCode(sampleTypeCode);
- sampleTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createSampleTypes([ sampleTypeCreation ]).then(function(results) {
- var creation = new dtos.SampleCreation();
- creation.setTypeId(new dtos.EntityTypePermId(sampleTypeCode));
- creation.setCode(code);
- creation.setSpaceId(new dtos.SpacePermId("TEST"));
- creation.setProperty(propertyTypeCode, "20130412140147735-20");
- return facade.createSamples([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SampleUpdate();
- update.setSampleId(permId);
- update.setProperty(propertyTypeCode, null);
- return facade.updateSamples([ update ]);
- }
-
- var fCheck = function(sample) {
- c.assertEqual(sample.getCode(), code, "Sample code");
- c.assertEqual(sample.getType().getCode(), sampleTypeCode, "Type code");
- c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code");
- c.assertObjectsCount(Object.keys(sample.getSampleProperties()), 0);
- c.assertEqual(sample.getHistory()[0].getPropertyName(), propertyTypeCode, "Previous sample property name");
- c.assertEqual(sample.getHistory()[0].getPropertyValue(), "20130412140147735-20", "Previous sample property value");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSample, fCheck);
- });
-
- QUnit.test("updateDataSetTypes()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("DATA_SET_TYPE");
-
- var fCreate = function(facade) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("initial value");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
-
- var creation = new dtos.DataSetTypeCreation();
- creation.setCode(code);
- creation.setDescription("a new description");
- creation.setPropertyAssignments([ assignmentCreation ]);
- creation.setMetaData({"dataset_type_update":"old_value", "dataset_type_delete":"del_value"});
-
- return facade.createDataSetTypes([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section 2");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("1.0");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
- var update = new dtos.DataSetTypeUpdate();
- update.setTypeId(permId);
- update.setDescription("another new description");
- update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"));
- update.setMainDataSetPattern(".*\\.jpg");
- update.setMainDataSetPath("original/images/");
- update.setDisallowDeletion(true);
- update.getPropertyAssignments().set([ assignmentCreation ]);
- update.getMetaData().put("dataset_type_update", "new_value");
- update.getMetaData().add({"dataset_type_add":"add_value"});
- update.getMetaData().remove("dataset_type_delete");
- return facade.updateDataSetTypes([ update ]);
- }
-
- var fCheck = function(type) {
- c.assertEqual(type.getCode(), code, "Type code");
- c.assertEqual(type.getPermId().getPermId(), code, "Type perm id");
- c.assertEqual(type.getDescription(), "another new description", "Description");
- c.assertEqual(type.getMainDataSetPattern(), ".*\\.jpg", "Main data set pattern");
- c.assertEqual(type.getMainDataSetPath(), "original/images/", "Main data set path");
- c.assertEqual(type.isDisallowDeletion(), true, "Disallow deletion");
-
- c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count");
-
- var assignment = type.getPropertyAssignments()[0];
-
- c.assertEqual(assignment.getSection(), "test section 2", "Assignment section");
- c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal");
- c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code");
- c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory");
- c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView");
- c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms");
-
- var metaData = type.getMetaData();
- c.assertEqual(metaData["dataset_type_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["dataset_type_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["dataset_type_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSetType, fCheck);
- });
-
- QUnit.test("updateDataSets()", function(assert) {
- var c = new common(assert, dtos);
- var code = null;
-
- var fCreate = function(facade) {
- return c.createDataSet(facade).then(function(permId) {
- code = permId.getPermId();
- return [ permId ];
- });
- }
-
- var fUpdate = function(facade, permId) {
- var physicalUpdate = new dtos.PhysicalDataUpdate();
- physicalUpdate.setFileFormatTypeId(new dtos.FileFormatTypePermId("TIFF"));
- physicalUpdate.setArchivingRequested(true);
-
- var update = new dtos.DataSetUpdate();
- update.setDataSetId(permId);
- update.setProperty("NOTES", "new 409 description");
- update.setPhysicalData(physicalUpdate);
-
- return facade.updateDataSets([ update ]);
- }
-
- var fCheck = function(dataSet) {
- c.assertEqual(dataSet.getCode(), code, "Code");
- c.assertEqual(dataSet.getProperties()["NOTES"], "new 409 description", "Property NOTES");
- c.assertEqual(dataSet.getPhysicalData().getFileFormatType().getCode(), "TIFF", "File format type");
- c.assertEqual(dataSet.getPhysicalData().isArchivingRequested(), true, "Archiving requested");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck);
- });
-
- QUnit.test("updateDataSet() change property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var dataSetTypeCode = c.generateId("DATA_SET_TYPE");
- var code = c.generateId("DATA_SET");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var dataSetTypeCreation = new dtos.DataSetTypeCreation();
- dataSetTypeCreation.setCode(dataSetTypeCode);
- dataSetTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createDataSetTypes([ dataSetTypeCreation ]).then(function(results) {
- var creation = new dtos.DataSetCreation();
- creation.setTypeId(new dtos.EntityTypePermId(dataSetTypeCode));
- creation.setCode(code);
- creation.setDataSetKind(dtos.DataSetKind.CONTAINER);
- creation.setDataStoreId(new dtos.DataStorePermId("DSS1"));
- creation.setExperimentId(new dtos.ExperimentIdentifier("/TEST/TEST-PROJECT/TEST-EXPERIMENT"));
- creation.setProperty(propertyTypeCode, "20130412140147735-20");
- creation.setMetaData({"dataset_update":"old_value", "dataset_delete":"del_value"});
- return facade.createDataSets([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.DataSetUpdate();
- update.setDataSetId(permId);
- update.setProperty(propertyTypeCode, "20130412140147736-21");
- update.getMetaData().put("dataset_update", "new_value");
- update.getMetaData().add({"dataset_add":"add_value"});
- update.getMetaData().remove("dataset_delete");
- return facade.updateDataSets([ update ]);
- }
-
- var fCheck = function(dataSet) {
- c.assertEqual(dataSet.getCode(), code, "Data set code");
- c.assertEqual(dataSet.getType().getCode(), dataSetTypeCode, "Type code");
- c.assertEqual(dataSet.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/PLATE-2", "Sample property");
- c.assertEqual(dataSet.getHistory()[0].getPropertyName(), propertyTypeCode, "Previous sample property name");
- c.assertEqual(dataSet.getHistory()[0].getPropertyValue(), "20130412140147735-20", "Previous sample property value");
-
- var metaData = dataSet.getMetaData();
- c.assertEqual(metaData["dataset_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["dataset_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["dataset_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck);
- });
-
- QUnit.test("updateDataSet() change multi-value property of type SAMPLE", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var dataSetTypeCode = c.generateId("DATA_SET_TYPE");
- var code = c.generateId("DATA_SET");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- propertyTypeCreation.setMultiValue(true);
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var dataSetTypeCreation = new dtos.DataSetTypeCreation();
- dataSetTypeCreation.setCode(dataSetTypeCode);
- dataSetTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createDataSetTypes([ dataSetTypeCreation ]).then(function(results) {
- var creation = new dtos.DataSetCreation();
- creation.setTypeId(new dtos.EntityTypePermId(dataSetTypeCode));
- creation.setCode(code);
- creation.setDataSetKind(dtos.DataSetKind.CONTAINER);
- creation.setDataStoreId(new dtos.DataStorePermId("DSS1"));
- creation.setExperimentId(new dtos.ExperimentIdentifier("/TEST/TEST-PROJECT/TEST-EXPERIMENT"));
- creation.setProperty(propertyTypeCode, ["20130412140147735-20", "20130424134657597-433"]);
- creation.setMetaData({"dataset_update":"old_value", "dataset_delete":"del_value"});
- return facade.createDataSets([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.DataSetUpdate();
- update.setDataSetId(permId);
- update.setProperty(propertyTypeCode, "20130412140147736-21");
- update.getMetaData().put("dataset_update", "new_value");
- update.getMetaData().add({"dataset_add":"add_value"});
- update.getMetaData().remove("dataset_delete");
- return facade.updateDataSets([ update ]);
- }
-
- var fCheck = function(dataSet) {
- c.assertEqual(dataSet.getCode(), code, "Data set code");
- c.assertEqual(dataSet.getType().getCode(), dataSetTypeCode, "Type code");
- c.assertEqual(dataSet.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/PLATE-2", "Sample property");
- var history = dataSet.getHistory().filter(x => x.propertyName == propertyTypeCode && x.validTo);
- c.assertEqual(history.length, 2, "Previous sample property name");
- c.assertEqual(history.map(x => x.propertyValue).sort().toString(), ["20130412140147735-20", "20130424134657597-433"].toString(), "Previous sample property value");
-
- var metaData = dataSet.getMetaData();
- c.assertEqual(metaData["dataset_update"], "new_value", "Metadata update");
- c.assertEqual(metaData["dataset_add"], "add_value", "Metadata add");
- c.assertEqual(metaData["dataset_delete"], undefined, "Metadata delete");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck);
- });
-
- QUnit.test("updateDataSets() link data set", function(assert) {
- var c = new common(assert, dtos);
- var code = "20160613195437233-437";
-
- var fCreate = function(facade) {
- return [ new dtos.DataSetPermId(code) ];
- }
-
- var fUpdate = function(facade, permId) {
- var linkUpdate = new dtos.LinkedDataUpdate();
- linkUpdate.setExternalCode("new code");
-
- var update = new dtos.DataSetUpdate();
- update.setDataSetId(permId);
- update.setLinkedData(linkUpdate);
-
- return facade.updateDataSets([ update ]);
- }
-
- var fCheck = function(dataSet) {
- c.assertEqual(dataSet.getCode(), code, "Code");
- c.assertEqual(dataSet.getLinkedData().getExternalCode(), "new code", "External code");
- c.assertEqual(dataSet.getLinkedData().getExternalDms().getPermId().toString(), "DMS_1", "External DMS");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck);
- });
-
- QUnit.test("updateDataSets() add content copy to link data set", function(assert) {
- var c = new common(assert, dtos);
- var edmsId = null;
-
- var fCreate = function(facade) {
- return c.createLinkDataSet(facade, "root/path", "my-hash", "my-repository-id").then(function(permId) {
- code = permId.getPermId();
- return [ permId ];
- });
- }
-
- var fUpdate = function(facade, permId) {
- return c.findDataSet(facade, permId).then(function(dataSet) {
- var contentCopy = dataSet.getLinkedData().getContentCopies()[0];
- edmsId = contentCopy.getExternalDms().getPermId();
- var contentCopyListUpdateValue = new dtos.ContentCopyListUpdateValue();
- var contentCopyCreation = new dtos.ContentCopyCreation();
- contentCopyCreation.setExternalDmsId(edmsId);
- contentCopyCreation.setPath("my/data/path");
- contentCopyCreation.setGitCommitHash("my-git-hash");
- contentCopyCreation.setGitRepositoryId("my-git-repository-id");
- contentCopyListUpdateValue.add([ contentCopyCreation ]);
- contentCopyListUpdateValue.remove([ contentCopy.getId() ]);
-
- var linkUpdate = new dtos.LinkedDataUpdate();
- linkUpdate.setContentCopyActions(contentCopyListUpdateValue.getActions());
-
- var update = new dtos.DataSetUpdate();
- update.setDataSetId(permId);
- update.setLinkedData(linkUpdate);
-
- return facade.updateDataSets([ update ]);
- });
- }
-
- var fCheck = function(dataSet) {
- c.assertEqual(dataSet.getCode(), code, "Code");
- var contentCopies = dataSet.getLinkedData().getContentCopies();
- c.assertEqual(contentCopies.length, 1, "Number of content copies");
- c.assertEqual(contentCopies[0].getExternalDms().getPermId().toString(), edmsId.toString(), "External DMS");
- c.assertEqual(contentCopies[0].getExternalCode(), null, "External code");
- c.assertEqual(contentCopies[0].getPath(), "/my/data/path", "Path");
- c.assertEqual(contentCopies[0].getGitCommitHash(), "my-git-hash", "Git commit hash");
- c.assertEqual(contentCopies[0].getGitRepositoryId(), "my-git-repository-id", "Git repository id");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck);
- });
-
- QUnit.test("updateMaterialTypes()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("MATERIAL_TYPE");
-
- var fCreate = function(facade) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("initial value");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
-
- var creation = new dtos.MaterialTypeCreation();
- creation.setCode(code);
- creation.setDescription("a new description");
- creation.setPropertyAssignments([ assignmentCreation ]);
-
- return facade.createMaterialTypes([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setSection("test section 2");
- assignmentCreation.setOrdinal(10);
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"));
- assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"));
- assignmentCreation.setMandatory(true);
- assignmentCreation.setInitialValueForExistingEntities("1.0");
- assignmentCreation.setShowInEditView(true);
- assignmentCreation.setShowRawValueInForms(true);
- var update = new dtos.MaterialTypeUpdate();
- update.setTypeId(permId);
- update.setDescription("another new description");
- update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"));
- update.getPropertyAssignments().add([ assignmentCreation ]);
- update.getPropertyAssignments().remove([ new dtos.PropertyAssignmentPermId(permId, new dtos.PropertyTypePermId("DESCRIPTION")) ]);
- return facade.updateMaterialTypes([ update ]);
- }
-
- var fCheck = function(type) {
- c.assertEqual(type.getCode(), code, "Type code");
- c.assertEqual(type.getPermId().getPermId(), code, "Type perm id");
- c.assertEqual(type.getDescription(), "another new description", "Description");
-
- c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count");
-
- var assignment = type.getPropertyAssignments()[0];
-
- c.assertEqual(assignment.getSection(), "test section 2", "Assignment section");
- c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal");
- c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code");
- c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory");
- c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView");
- c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findMaterialType, fCheck);
- });
-
- QUnit.test("updateMaterials()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("MATERIAL");
-
- var fCreate = function(facade) {
- var materialCreation = new dtos.MaterialCreation();
- materialCreation.setTypeId(new dtos.EntityTypePermId("COMPOUND"));
- materialCreation.setCode(code);
- materialCreation.setProperty("DESCRIPTION", "Metal");
- return facade.createMaterials([ materialCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var materialUpdate = new dtos.MaterialUpdate();
- materialUpdate.setMaterialId(permId);
- materialUpdate.setProperty("DESCRIPTION", "Alloy");
- return facade.updateMaterials([ materialUpdate ]);
- }
-
- var fCheck = function(material) {
- c.assertEqual(material.getCode(), code, "Material code");
- c.assertEqual(material.getType().getCode(), "COMPOUND", "Type code");
- var properties = material.getProperties();
- c.assertEqual(properties["DESCRIPTION"], "Alloy", "Property DESCRIPTION");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findMaterial, fCheck);
- });
-
- QUnit.test("updatePropertyTypes()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("PROPERTY_TYPE");
- var description = "Description of " + code;
- var label = "Label of " + code;
- var metaData1 = {"greetings" : "hello test"};
-
- var fCreate = function(facade) {
- var creation = new dtos.PropertyTypeCreation();
- creation.setCode(code);
- creation.setLabel("Testing");
- creation.setDescription("testing");
- creation.setDataType(dtos.DataType.VARCHAR);
- creation.setMetaData(metaData1);
- return facade.createPropertyTypes([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.PropertyTypeUpdate();
- update.setTypeId(new dtos.PropertyTypePermId(code));
- update.setDescription(description);
- update.setLabel(label);
- var metaData = update.getMetaData();
- metaData.remove("greetings");
- metaData.put("valid", "true");
- return facade.updatePropertyTypes([ update ]);
- }
-
- var fCheck = function(propertyType) {
- c.assertEqual(propertyType.getCode(), code, "Code");
- c.assertEqual(propertyType.getDescription(), description, "Description");
- c.assertEqual(propertyType.getLabel(), label, "Label");
- c.assertEqualDictionary(propertyType.getMetaData(), {"valid" : "true"}, "Meta data");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPropertyType, fCheck);
- });
-
- QUnit.test("updatePropertyTypes() convert data type ", function(assert) {
- var c = new common(assert, dtos);
- var propertyTypeCode = c.generateId("PROPERTY_TYPE");
- var dataSetTypeCode = c.generateId("DATA_SET_TYPE");
- var code = c.generateId("DATA_SET");
-
- var fCreate = function(facade) {
- var propertyTypeCreation = new dtos.PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode);
- propertyTypeCreation.setDescription("hello");
- propertyTypeCreation.setDataType(dtos.DataType.SAMPLE);
- propertyTypeCreation.setLabel("Test Property Type");
- return facade.createPropertyTypes([ propertyTypeCreation ]).then(function(results) {
- var assignmentCreation = new dtos.PropertyAssignmentCreation();
- assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- var dataSetTypeCreation = new dtos.DataSetTypeCreation();
- dataSetTypeCreation.setCode(dataSetTypeCode);
- dataSetTypeCreation.setPropertyAssignments([ assignmentCreation ]);
- return facade.createDataSetTypes([ dataSetTypeCreation ]).then(function(results) {
- var creation = new dtos.DataSetCreation();
- creation.setTypeId(new dtos.EntityTypePermId(dataSetTypeCode));
- creation.setCode(code);
- creation.setDataSetKind(dtos.DataSetKind.CONTAINER);
- creation.setDataStoreId(new dtos.DataStorePermId("DSS1"));
- creation.setExperimentId(new dtos.ExperimentIdentifier("/TEST/TEST-PROJECT/TEST-EXPERIMENT"));
- creation.setProperty(propertyTypeCode, "20130412140147735-20");
- return facade.createDataSets([ creation ]);
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.PropertyTypeUpdate();
- update.setTypeId(new dtos.PropertyTypePermId(propertyTypeCode));
- update.convertToDataType(dtos.DataType.VARCHAR);
- return facade.updatePropertyTypes([ update ]);
- }
-
- var fCheck = function(dataSet) {
- c.assertEqual(dataSet.getCode(), code, "Data set code");
- c.assertEqual(dataSet.getType().getCode(), dataSetTypeCode, "Type code");
- c.assertObjectsCount(Object.keys(dataSet.getSampleProperties()), 0);
- c.assertEqual(dataSet.getProperties()[propertyTypeCode], "20130412140147735-20", "Property");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck);
- });
-
- QUnit.test("updatePlugins()", function(assert) {
- var c = new common(assert, dtos);
- var name = c.generateId("PLUGIN");
- var description = "Description of " + name;
- var script = "print 'hello'";
-
- var fCreate = function(facade) {
- var creation = new dtos.PluginCreation();
- creation.setName(name);
- creation.setScript("pass");
- creation.setDescription("old description");
- creation.setAvailable(false);
- creation.setPluginType(dtos.PluginType.MANAGED_PROPERTY);
- return facade.createPlugins([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.PluginUpdate();
- update.setPluginId(new dtos.PluginPermId(name));
- update.setDescription(description);
- update.setScript(script);
- return facade.updatePlugins([ update ]);
- }
-
- var fCheck = function(plugin) {
- c.assertEqual(plugin.getName(), name, "Name");
- c.assertEqual(plugin.getDescription(), description, "Description");
- c.assertEqual(plugin.getScript(), script, "Script");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPlugin, fCheck);
- });
-
- QUnit.test("updateVocabularies()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("VOCABULARY");
- var description = "Description of " + code;
-
- var fCreate = function(facade) {
- var creation = new dtos.VocabularyCreation();
- creation.setCode(code);
- return facade.createVocabularies([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.VocabularyUpdate();
- update.setVocabularyId(permId);
- update.setDescription(description);
- update.setChosenFromList(true);
- update.setUrlTemplate("https://www.ethz.ch")
- return facade.updateVocabularies([ update ]);
- }
-
- var fCheck = function(vocabulary) {
- c.assertEqual(vocabulary.getCode(), code, "Code");
- c.assertEqual(vocabulary.getPermId().getPermId(), code, "Perm id");
- c.assertEqual(vocabulary.getDescription(), description, "Description");
- c.assertEqual(vocabulary.getUrlTemplate(), "https://www.ethz.ch", "URL template");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findVocabulary, fCheck);
- });
-
- QUnit.test("updateVocabularyTerms()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("VOCABULARY_TERM");
- var description = "Description of " + code;
-
- var fCreate = function(facade) {
- var termCreation = new dtos.VocabularyTermCreation();
- termCreation.setVocabularyId(new dtos.VocabularyPermId("TEST-VOCABULARY"));
- termCreation.setCode(code);
- return facade.createVocabularyTerms([ termCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var termUpdate = new dtos.VocabularyTermUpdate();
- termUpdate.setVocabularyTermId(permId);
- termUpdate.setDescription(description);
- return facade.updateVocabularyTerms([ termUpdate ]);
- }
-
- var fCheck = function(term) {
- c.assertEqual(term.getCode(), code, "Term code");
- c.assertEqual(term.getVocabulary().getCode(), "TEST-VOCABULARY", "Term vocabulary code");
- c.assertEqual(term.getDescription(), description, "Term description");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findVocabularyTerm, fCheck);
- });
-
- QUnit.test("updateExternalDms()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("EDMS");
-
- var fCreate = function(facade) {
- var edmsCreation = new dtos.ExternalDmsCreation();
- edmsCreation.setCode(code);
- edmsCreation.setLabel("Test EDMS");
- edmsCreation.setAddressType(dtos.ExternalDmsAddressType.OPENBIS);
- edmsCreation.setAddress("https://my-site/q=${term}")
- return facade.createExternalDms([ edmsCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var edmsUpdate = new dtos.ExternalDmsUpdate();
- edmsUpdate.setExternalDmsId(permId);
- edmsUpdate.setLabel("Test EDMS 2");
- edmsUpdate.setAddress("https://my-second-site/q=${term}");
- return facade.updateExternalDataManagementSystems([ edmsUpdate ]);
- }
-
- var fCheck = function(edms) {
- c.assertEqual(edms.getCode(), code, "EDMS code");
- c.assertEqual(edms.getLabel(), "Test EDMS 2", "EDMS label");
- c.assertEqual(edms.getAddress(), "https://my-second-site/q=${term}", "EDMS address");
- c.assertEqual(edms.getUrlTemplate(), "https://my-second-site/q=${term}", "EDMS URL template");
- c.assertEqual(edms.getAddressType(), "OPENBIS", "EDMS address type");
- c.assertEqual(edms.isOpenbis(), true, "EDMS is openBIS");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findExternalDms, fCheck);
- });
-
- QUnit.test("updateTags()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("TAG");
- var description = "Description of " + code;
-
- var fCreate = function(facade) {
- var tagCreation = new dtos.TagCreation();
- tagCreation.setCode(code);
- return facade.createTags([ tagCreation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var tagUpdate = new dtos.TagUpdate();
- tagUpdate.setTagId(permId);
- tagUpdate.setDescription(description);
- return facade.updateTags([ tagUpdate ]);
- }
-
- var fCheck = function(tag) {
- c.assertEqual(tag.getCode(), code, "Tag code");
- c.assertEqual(tag.getDescription(), description, "Tag description");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findTag, fCheck);
- });
-
- QUnit.test("updateAuthorizationGroups()", function(assert) {
- var c = new common(assert, dtos);
- var code = c.generateId("AUTHORIZATION_GROUP");
- var description = "Description of " + code;
-
- var fCreate = function(facade) {
- var creation = new dtos.AuthorizationGroupCreation();
- creation.setCode(code);
- creation.setUserIds([ new dtos.PersonPermId("power_user") ]);
- return facade.createAuthorizationGroups([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.AuthorizationGroupUpdate();
- update.setAuthorizationGroupId(permId);
- update.setDescription(description);
- update.getUserIds().remove([ new dtos.PersonPermId("power_user") ]);
- update.getUserIds().add([ new dtos.PersonPermId("admin"), new dtos.Me() ]);
- return facade.updateAuthorizationGroups([ update ]);
- }
-
- var fCheck = function(group) {
- c.assertEqual(group.getCode(), code, "Code");
- c.assertEqual(group.getDescription(), description, "Description");
- var users = $.map(group.getUsers(), function(user) {
- return user.getUserId();
- });
- users.sort();
- c.assertEqual(users.toString(), "admin,openbis_test_js", "Users");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findAuthorizationGroup, fCheck);
- });
-
- QUnit.test("updatePersons()", function(assert) {
- var c = new common(assert, dtos);
- var userId = c.generateId("USER");
-
- var fCreate = function(facade) {
- var creation = new dtos.PersonCreation();
- creation.setUserId(userId);
- return facade.createPersons([ creation ]).then(function(permIds) {
- var creation = new dtos.RoleAssignmentCreation();
- creation.setUserId(permIds[0]);
- creation.setRole(dtos.Role.ADMIN);
- return facade.createRoleAssignments([ creation ]).then(function(assignmentId) {
- return permIds;
- });
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.PersonUpdate();
- update.setUserId(permId);
- update.setSpaceId(new dtos.SpacePermId("TEST"))
- return facade.updatePersons([ update ]);
- }
-
- var fCheck = function(person) {
- c.assertEqual(person.getUserId(), userId, "User id");
- c.assertEqual(person.getSpace().getCode(), "TEST", "Home space");
- c.assertEqual(person.isActive(), true, "Active");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck);
- });
-
- QUnit.test("updatePersons() deactivate", function(assert) {
- var c = new common(assert, dtos);
- var userId = c.generateId("USER");
-
- var fCreate = function(facade) {
- var creation = new dtos.PersonCreation();
- creation.setUserId(userId);
- return facade.createPersons([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.PersonUpdate();
- update.setUserId(permId);
- update.deactivate();
- return facade.updatePersons([ update ]);
- }
-
- var fCheck = function(person) {
- c.assertEqual(person.getUserId(), userId, "User id");
- c.assertEqual(person.isActive(), false, "Active");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck);
- });
-
- QUnit.test("updatePersons() deactivate and activate", function(assert) {
- var c = new common(assert, dtos);
- var userId = c.generateId("USER");
-
- var fCreate = function(facade) {
- var creation = new dtos.PersonCreation();
- creation.setUserId(userId);
- return facade.createPersons([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var deactivateUpdate = new dtos.PersonUpdate();
- deactivateUpdate.setUserId(permId);
- deactivateUpdate.deactivate();
- return facade.updatePersons([ deactivateUpdate ]).then(function(){
- var activateUpdate = new dtos.PersonUpdate();
- activateUpdate.setUserId(permId);
- activateUpdate.activate();
- return facade.updatePersons([ activateUpdate ]);
- })
- }
-
- var fCheck = function(person) {
- c.assertEqual(person.getUserId(), userId, "User id");
- c.assertEqual(person.isActive(), true, "Active");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck);
- });
-
- QUnit.test("updatePersons() webAppSettings", function(assert) {
- var c = new common(assert, dtos);
- var userId = c.generateId("USER");
-
- var WEB_APP_1 = "webApp1";
- var WEB_APP_2 = "webApp2";
- var WEB_APP_3 = "webApp3";
- var WEB_APP_4 = "webApp4";
-
- var fCreate = function(facade) {
- var creation = new dtos.PersonCreation();
- creation.setUserId(userId);
- return facade.createPersons([ creation ]);
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.PersonUpdate();
- update.setUserId(permId);
-
- var webApp1Update = update.getWebAppSettings(WEB_APP_1);
- webApp1Update.add(new dtos.WebAppSettingCreation("n1a", "v1a"));
- webApp1Update.add(new dtos.WebAppSettingCreation("n1b", "v1b"));
-
- var webApp2Update = update.getWebAppSettings(WEB_APP_2);
- webApp2Update.add(new dtos.WebAppSettingCreation("n2a", "v2a"));
-
- var webApp3Update = update.getWebAppSettings(WEB_APP_3);
- webApp3Update.add(new dtos.WebAppSettingCreation("n3a", "v3a"));
-
- var webApp4Update = update.getWebAppSettings(WEB_APP_4);
- webApp4Update.add(new dtos.WebAppSettingCreation("n4a", "v4a"));
-
- return facade.updatePersons([ update ]).then(function() {
- var update = new dtos.PersonUpdate();
- update.setUserId(permId);
-
- var webApp1Update = update.getWebAppSettings(WEB_APP_1);
- webApp1Update.add(new dtos.WebAppSettingCreation("n1c", "v1c"));
- webApp1Update.remove("n1b");
-
- var webApp2Update = update.getWebAppSettings(WEB_APP_2);
- webApp2Update.set([ new dtos.WebAppSettingCreation("n2a", "v2a updated"), new dtos.WebAppSettingCreation("n2c", "v2c") ]);
-
- var webApp3Update = update.getWebAppSettings(WEB_APP_3);
- webApp3Update.set();
-
- var webApp4Update = update.getWebAppSettings(WEB_APP_4);
- webApp4Update.remove("n4a");
-
- return facade.updatePersons([ update ]);
- });
- }
-
- var fCheck = function(person) {
- c.assertEqual(person.getUserId(), userId, "User id");
- c.assertEqual(Object.keys(person.getWebAppSettings()).length, 2, "Web apps");
-
- var webApp1 = person.getWebAppSettings(WEB_APP_1).getSettings();
- c.assertEqual(Object.keys(webApp1).length, 2);
- c.assertEqual(webApp1["n1a"].getValue(), "v1a");
- c.assertEqual(webApp1["n1c"].getValue(), "v1c");
-
- var webApp2 = person.getWebAppSettings(WEB_APP_2).getSettings();
- c.assertEqual(Object.keys(webApp2).length, 2);
- c.assertEqual(webApp2["n2a"].getValue(), "v2a updated");
- c.assertEqual(webApp2["n2c"].getValue(), "v2c");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck);
- });
-
- QUnit.test("updateOperationExecutions()", function(assert) {
- var c = new common(assert, dtos);
- var permId = null;
-
- var fCreate = function(facade) {
- return c.createOperationExecution(facade).then(function(id) {
- permId = id;
- return [ id ];
- });
- }
-
- var fUpdate = function(facade, permId) {
- var executionUpdate = new dtos.OperationExecutionUpdate();
- executionUpdate.setExecutionId(permId);
- executionUpdate.setDescription("Description " + permId.getPermId());
- return facade.updateOperationExecutions([ executionUpdate ]);
- }
-
- var fCheck = function(execution) {
- c.assertEqual(execution.getPermId().getPermId(), permId.getPermId(), "PermId");
- c.assertEqual(execution.getDescription(), "Description " + permId.getPermId(), "Execution description");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findOperationExecution, fCheck);
- });
-
- QUnit.test("updateSemanticAnnotations()", function(assert) {
- var c = new common(assert, dtos);
-
- var fCreate = function(facade) {
- return c.createSemanticAnnotation(facade).then(function(permId) {
- return [ permId ];
- });
- }
-
- var fUpdate = function(facade, permId) {
- var update = new dtos.SemanticAnnotationUpdate();
- update.setSemanticAnnotationId(permId);
- update.setPredicateOntologyId("updatedPredicateOntologyId");
- update.setPredicateOntologyVersion("updatedPredicateOntologyVersion");
- update.setPredicateAccessionId("updatedPredicateAccessionId");
- update.setDescriptorOntologyId("updatedDescriptorOntologyId");
- update.setDescriptorOntologyVersion("updatedDescriptorOntologyVersion");
- update.setDescriptorAccessionId("updatedDescriptorAccessionId");
- return facade.updateSemanticAnnotations([ update ]);
- }
-
- var fCheck = function(annotation) {
- c.assertEqual(annotation.getPredicateOntologyId(), "updatedPredicateOntologyId", "Predicate Ontology Id");
- c.assertEqual(annotation.getPredicateOntologyVersion(), "updatedPredicateOntologyVersion", "Predicate Ontology Version");
- c.assertEqual(annotation.getPredicateAccessionId(), "updatedPredicateAccessionId", "Predicate Accession Id");
- c.assertEqual(annotation.getDescriptorOntologyId(), "updatedDescriptorOntologyId", "Descriptor Ontology Id");
- c.assertEqual(annotation.getDescriptorOntologyVersion(), "updatedDescriptorOntologyVersion", "Descriptor Ontology Version");
- c.assertEqual(annotation.getDescriptorAccessionId(), "updatedDescriptorAccessionId", "Descriptor Accession Id");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findSemanticAnnotation, fCheck);
- });
-
- QUnit.test("updateQueries()", function(assert) {
- var c = new common(assert, dtos);
-
- var update = new dtos.QueryUpdate();
- update.setName(c.generateId("query"));
- update.setDescription("updated description");
- update.setDatabaseId(new dtos.QueryDatabaseName("openbisDB2"));
- update.setQueryType(dtos.QueryType.SAMPLE);
- update.setEntityTypeCodePattern("sample type pattern");
- update.setSql("select * from samples where perm_id = ${key};");
- update.setPublic(true);
-
- var fCreate = function(facade) {
- return c.createQuery(facade).then(function(techId) {
- return [ techId ];
- });
- }
-
- var fUpdate = function(facade, techId) {
- update.setQueryId(techId);
- return facade.updateQueries([ update ]);
- }
-
- var fCheck = function(query) {
- c.assertEqual(query.getName(), update.getName().getValue(), "Name");
- c.assertEqual(query.getDescription(), update.getDescription().getValue(), "Description");
- c.assertEqual(query.getDatabaseId().getName(), update.getDatabaseId().getValue().getName(), "Database");
- c.assertEqual(query.getQueryType(), update.getQueryType().getValue(), "Query type");
- c.assertEqual(query.getEntityTypeCodePattern(), update.getEntityTypeCodePattern().getValue(), "Entity type code pattern");
- c.assertEqual(query.getSql(), update.getSql().getValue(), "Sql");
- c.assertEqual(query.isPublic(), update.isPublic().getValue(), "Is public");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findQuery, fCheck);
- });
-
- QUnit.test("updatePersonalAccessTokens()", function(assert) {
- var c = new common(assert, dtos);
-
- var update = new dtos.PersonalAccessTokenUpdate();
- update.setAccessDate(new Date().getTime());
-
- var fCreate = function(facade) {
- return c.createPersonalAccessToken(facade).then(function(permId) {
- return [ permId ];
- });
- }
-
- var fUpdate = function(facade, permId) {
- update.setPersonalAccessTokenId(permId);
- return facade.updatePersonalAccessTokens([ update ]);
- }
-
- var fCheck = function(pat) {
- c.assertEqual(pat.getAccessDate(), update.getAccessDate().getValue(), "Access date");
- }
-
- testUpdate(c, fCreate, fUpdate, c.findPersonalAccessToken, fCheck);
- });
- }
-
- return function() {
- executeModule("Update tests (RequireJS)", new openbis(), dtos);
- executeModule("Update tests (RequireJS - executeOperations)", new openbisExecuteOperations(new openbis(), dtos), dtos);
- executeModule("Update tests (module VAR)", new window.openbis.openbis(), window.openbis);
- executeModule("Update tests (module VAR - executeOperations)", new openbisExecuteOperations(new window.openbis.openbis(), window.openbis), window.openbis);
- executeModule("Update tests (module ESM)", new window.openbisESM.openbis(), window.openbisESM);
- executeModule("Update tests (module ESM - executeOperations)", new openbisExecuteOperations(new window.openbisESM.openbis(), window.openbisESM), window.openbisESM);
- }
-});
diff --git a/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-update.ts b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-update.ts
new file mode 100644
index 0000000000000000000000000000000000000000..738756b7c6e3099a7f32c53c780113fc97d0a812
--- /dev/null
+++ b/test-api-openbis-javascript/servers/common/core-plugins/tests/1/as/webapps/openbis-v3-api-test/html/test/test-update.ts
@@ -0,0 +1,1901 @@
+import openbis from "./lib/openbis/openbis.esm"
+
+exports.default = new Promise((resolve) => {
+ require(["jquery", "underscore", "openbis", "test/openbis-execute-operations", "test/common", "test/dtos"], function (
+ $,
+ _,
+ openbis,
+ openbisExecuteOperations,
+ common,
+ dtos
+ ) {
+ var executeModule = function (moduleName: string, facade: openbis.openbis, dtos: openbis.bundle) {
+ QUnit.module(moduleName)
+
+ var testUpdate = function (c, fCreate, fUpdate, fFind, fCheck, fCheckError?) {
+ c.start()
+
+ var ctx = {
+ facade: null,
+ permIds: null,
+ }
+ c.login(facade)
+ .then(function () {
+ ctx.facade = facade
+ return fCreate(facade)
+ })
+ .then(function (permIds) {
+ ctx.permIds = permIds
+ c.assertTrue(permIds != null && permIds.length == 1, "Entity was created")
+ return fFind(ctx.facade, permIds[0])
+ })
+ .then(function (entity) {
+ c.assertNotNull(entity, "Entity can be found")
+ return fUpdate(ctx.facade, ctx.permIds[0])
+ })
+ .then(function () {
+ c.ok("Entity was updated")
+ return fFind(ctx.facade, ctx.permIds[0])
+ })
+ .then(function (entity) {
+ if (fCheck) {
+ fCheck(entity)
+ }
+ c.finish()
+ })
+ .fail(function (error) {
+ if (fCheckError) {
+ fCheckError(error.message, ctx.permIds[0])
+ } else {
+ c.fail(error.message)
+ }
+ c.finish()
+ })
+ }
+
+ QUnit.test("updateSpaces()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("SPACE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.SpaceCreation()
+ creation.setCode(code)
+ creation.setDescription("test description")
+ return facade.createSpaces([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SpaceUpdate()
+ update.setSpaceId(permId)
+ update.setDescription("test description 2")
+ return facade.updateSpaces([update])
+ }
+
+ var fCheck = function (space: openbis.Space) {
+ c.assertEqual(space.getCode(), code, "Code")
+ c.assertEqual(space.getDescription(), "test description 2", "Description")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSpace, fCheck)
+ })
+
+ QUnit.test("updateProjects() added attachments", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("PROJECT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var projectCreation = new dtos.ProjectCreation()
+ projectCreation.setSpaceId(new dtos.SpacePermId("TEST"))
+ projectCreation.setCode(code)
+ projectCreation.setDescription("JS test project")
+ return facade.createProjects([projectCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var projectUpdate = new dtos.ProjectUpdate()
+ projectUpdate.setProjectId(permId)
+ projectUpdate.setSpaceId(new dtos.SpacePermId("PLATONIC"))
+ var attachmentCreation = new dtos.AttachmentCreation()
+ attachmentCreation.setFileName("test_file")
+ attachmentCreation.setTitle("test_title")
+ attachmentCreation.setDescription("test_description")
+ attachmentCreation.setContent(btoa("hello world"))
+ projectUpdate.getAttachments().add([attachmentCreation])
+ return facade.updateProjects([projectUpdate])
+ }
+
+ var fCheck = function (project: openbis.Project) {
+ c.assertEqual(project.getCode(), code, "Project code")
+ c.assertEqual(project.getSpace().getCode(), "PLATONIC", "Space code")
+ c.assertEqual(project.getDescription(), "JS test project", "Description")
+ var attachments = project.getAttachments()
+ c.assertEqual(attachments[0].getFileName(), "test_file", "Attachment file name")
+ c.assertEqual(attachments[0].getTitle(), "test_title", "Attachment title")
+ c.assertEqual(attachments[0].getDescription(), "test_description", "Attachment description")
+ c.assertEqual(atob(attachments[0].getContent()), "hello world", "Attachment content")
+ c.assertEqual(attachments.length, 1, "Number of attachments")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findProject, fCheck)
+ })
+
+ QUnit.test("updateProjects() changed attributes", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("PROJECT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var projectCreation = new dtos.ProjectCreation()
+ projectCreation.setSpaceId(new dtos.SpacePermId("TEST"))
+ projectCreation.setCode(code)
+ projectCreation.setDescription("JS test project")
+ return facade.createProjects([projectCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var projectUpdate = new dtos.ProjectUpdate()
+ projectUpdate.setProjectId(permId)
+ projectUpdate.setDescription("test_description")
+ return facade.updateProjects([projectUpdate])
+ }
+
+ var fCheck = function (project: openbis.Project) {
+ c.assertEqual(project.getCode(), code, "Project code")
+ c.assertEqual(project.getSpace().getCode(), "TEST", "Space code")
+ c.assertEqual(project.getDescription(), "test_description", "Description")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findProject, fCheck)
+ })
+
+ QUnit.test("updateProjects() removed space", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("PROJECT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var projectCreation = new dtos.ProjectCreation()
+ projectCreation.setSpaceId(new dtos.SpacePermId("TEST"))
+ projectCreation.setCode(code)
+ projectCreation.setDescription("JS test project")
+ return facade.createProjects([projectCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var projectUpdate = new dtos.ProjectUpdate()
+ projectUpdate.setProjectId(permId)
+ projectUpdate.setSpaceId(null)
+ return facade.updateProjects([projectUpdate])
+ }
+
+ var fCheckError = function (error, permId) {
+ c.assertContains(error, "Space id cannot be null", "Error")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findProject, null, fCheckError)
+ })
+
+ QUnit.test("updateExperimentTypes()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("EXPERIMENT_TYPE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setInitialValueForExistingEntities("initial value")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+
+ var creation = new dtos.ExperimentTypeCreation()
+ creation.setCode(code)
+ creation.setDescription("a new description")
+ creation.setPropertyAssignments([assignmentCreation])
+ creation.setMetaData({ experiment_type_update: "old_value", experiment_type_delete: "del_value" })
+
+ return facade.createExperimentTypes([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section 2")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("1.0")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+ var update = new dtos.ExperimentTypeUpdate()
+ update.setTypeId(permId)
+ update.setDescription("another new description")
+ update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"))
+ update.getPropertyAssignments().set([assignmentCreation])
+ update.getMetaData().put("experiment_type_update", "new_value")
+ update.getMetaData().add([{ experiment_type_add: "add_value" }])
+ update.getMetaData().remove(["experiment_type_delete"])
+ return facade.updateExperimentTypes([update])
+ }
+
+ var fCheck = function (type: openbis.ExperimentType) {
+ c.assertEqual(type.getCode(), code, "Type code")
+ c.assertEqual(type.getPermId().getPermId(), code, "Type perm id")
+ c.assertEqual(type.getDescription(), "another new description", "Description")
+
+ c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count")
+
+ var assignment = type.getPropertyAssignments()[0]
+
+ c.assertEqual(assignment.getSection(), "test section 2", "Assignment section")
+ c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal")
+ c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code")
+ c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory")
+ c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView")
+ c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms")
+
+ var metaData = type.getMetaData()
+ c.assertEqual(metaData["experiment_type_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["experiment_type_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["experiment_type_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExperimentType, fCheck)
+ })
+
+ QUnit.test("updateExperiments() changed attributes + added tag + added attachment", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("EXPERIMENT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var experimentCreation = new dtos.ExperimentCreation()
+ experimentCreation.setCode(code)
+ experimentCreation.setTypeId(new dtos.EntityTypePermId("HT_SEQUENCING"))
+ experimentCreation.setProperty("EXPERIMENT_DESIGN", "EXPRESSION")
+ experimentCreation.setTagIds([new dtos.TagCode("CREATE_JSON_TAG")])
+ experimentCreation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"))
+ experimentCreation.setMetaData({ experiment_update: "old_value", experiment_delete: "del_value" })
+ return facade.createExperiments([experimentCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var experimentUpdate = new dtos.ExperimentUpdate()
+ experimentUpdate.setExperimentId(permId)
+ experimentUpdate.setProjectId(new dtos.ProjectIdentifier("/PLATONIC/SCREENING-EXAMPLES"))
+ experimentUpdate.getTagIds().add([new dtos.TagCode("CREATE_ANOTHER_JSON_TAG")])
+ var attachmentCreation = new dtos.AttachmentCreation()
+ attachmentCreation.setFileName("test_file")
+ attachmentCreation.setTitle("test_title")
+ attachmentCreation.setDescription("test_description")
+ attachmentCreation.setContent(btoa("hello world"))
+ experimentUpdate.getAttachments().add([attachmentCreation])
+ experimentUpdate.getMetaData().put("experiment_update", "new_value")
+ experimentUpdate.getMetaData().add([{ experiment_add: "add_value" }])
+ experimentUpdate.getMetaData().remove(["experiment_delete"])
+ return facade.updateExperiments([experimentUpdate])
+ }
+
+ var fCheck = function (experiment: openbis.Experiment) {
+ c.assertEqual(experiment.getCode(), code, "Experiment code")
+ c.assertEqual(experiment.getType().getCode(), "HT_SEQUENCING", "Type code")
+ c.assertEqual(experiment.getProject().getCode(), "SCREENING-EXAMPLES", "Project code")
+ c.assertEqual(experiment.getProject().getSpace().getCode(), "PLATONIC", "Space code")
+ var tags = _.sortBy(experiment.getTags(), "code")
+ c.assertEqual(tags[0].code, "CREATE_ANOTHER_JSON_TAG", "tags")
+ c.assertEqual(tags[1].code, "CREATE_JSON_TAG", "tags")
+ c.assertEqual(tags.length, 2, "Number of tags")
+ var attachments = experiment.getAttachments()
+ c.assertEqual(attachments[0].getFileName(), "test_file", "Attachment file name")
+ c.assertEqual(attachments[0].getTitle(), "test_title", "Attachment title")
+ c.assertEqual(attachments[0].getDescription(), "test_description", "Attachment description")
+ c.assertEqual(atob(attachments[0].getContent()), "hello world", "Attachment content")
+ c.assertEqual(attachments.length, 1, "Number of attachments")
+
+ var metaData = experiment.getMetaData()
+ c.assertEqual(metaData["experiment_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["experiment_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["experiment_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck)
+ })
+
+ QUnit.test("updateExperiments() changed properties + removed tag", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("EXPERIMENT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var experimentCreation = new dtos.ExperimentCreation()
+ experimentCreation.setCode(code)
+ experimentCreation.setTypeId(new dtos.EntityTypePermId("HT_SEQUENCING"))
+ experimentCreation.setProperty("EXPERIMENT_DESIGN", "EXPRESSION")
+ experimentCreation.setTagIds([new dtos.TagCode("CREATE_JSON_TAG")])
+ experimentCreation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"))
+ return facade.createExperiments([experimentCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var experimentUpdate = new dtos.ExperimentUpdate()
+ experimentUpdate.setExperimentId(permId)
+ experimentUpdate.setProperty("EXPERIMENT_DESIGN", "OTHER")
+ experimentUpdate.getTagIds().remove([new dtos.TagCode("UNKNOWN_TAG"), new dtos.TagCode("CREATE_JSON_TAG")])
+ return facade.updateExperiments([experimentUpdate])
+ }
+
+ var fCheck = function (experiment: openbis.Experiment) {
+ c.assertEqual(experiment.getCode(), code, "Experiment code")
+ c.assertEqual(experiment.getType().getCode(), "HT_SEQUENCING", "Type code")
+ c.assertEqual(experiment.getProject().getCode(), "TEST-PROJECT", "Project code")
+ c.assertEqual(experiment.getProject().getSpace().getCode(), "TEST", "Space code")
+ var properties = experiment.getProperties()
+ c.assertEqual(properties["EXPERIMENT_DESIGN"], "OTHER", "Property EXPERIMENT_DESIGN")
+ c.assertEqual(Object.keys(properties), "EXPERIMENT_DESIGN", "Properties")
+ c.assertEqual(experiment.getTags().length, 0, "Number of tags")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck)
+ })
+
+ QUnit.test("updateExperiments() removed project", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("EXPERIMENT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var experimentCreation = new dtos.ExperimentCreation()
+ experimentCreation.setCode(code)
+ experimentCreation.setTypeId(new dtos.EntityTypePermId("HT_SEQUENCING"))
+ experimentCreation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"))
+ return facade.createExperiments([experimentCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var experimentUpdate = new dtos.ExperimentUpdate()
+ experimentUpdate.setExperimentId(permId)
+ experimentUpdate.setProjectId(null)
+ return facade.updateExperiments([experimentUpdate])
+ }
+
+ var fCheckError = function (error, permId) {
+ c.assertContains(error, "Project id cannot be null", "Error")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExperiment, null, fCheckError)
+ })
+
+ QUnit.test("updateExperiment() change property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var experimentTypeCode = c.generateId("EXPERIMENT_TYPE")
+ var code = c.generateId("EXPERIMENT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var experimentTypeCreation = new dtos.ExperimentTypeCreation()
+ experimentTypeCreation.setCode(experimentTypeCode)
+ experimentTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createExperimentTypes([experimentTypeCreation]).then(function (results) {
+ var creation = new dtos.ExperimentCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(experimentTypeCode))
+ creation.setCode(code)
+ creation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"))
+ creation.setProperty(propertyTypeCode, "20130412140147735-20")
+ return facade.createExperiments([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.ExperimentUpdate()
+ update.setExperimentId(permId)
+ update.setProperty(propertyTypeCode, "20130412140147736-21")
+ return facade.updateExperiments([update])
+ }
+
+ var fCheck = function (experiment: openbis.Experiment) {
+ c.assertEqual(experiment.getCode(), code, "Experiment code")
+ c.assertEqual(experiment.getType().getCode(), experimentTypeCode, "Type code")
+ c.assertEqual(experiment.getProject().getCode(), "TEST-PROJECT", "Project code")
+ c.assertEqual(experiment.getProject().getSpace().getCode(), "TEST", "Space code")
+ c.assertEqual(
+ experiment.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(),
+ "/PLATONIC/SCREENING-EXAMPLES/PLATE-2",
+ "Sample property"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>experiment.getHistory()[0]).getPropertyName(),
+ propertyTypeCode,
+ "Previous sample property name"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>experiment.getHistory()[0]).getPropertyValue(),
+ "20130412140147735-20",
+ "Previous sample property value"
+ )
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck)
+ })
+
+ QUnit.test("updateExperiment() change multi-value property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var experimentTypeCode = c.generateId("EXPERIMENT_TYPE")
+ var code = c.generateId("EXPERIMENT")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ propertyTypeCreation.setMultiValue(true)
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var experimentTypeCreation = new dtos.ExperimentTypeCreation()
+ experimentTypeCreation.setCode(experimentTypeCode)
+ experimentTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createExperimentTypes([experimentTypeCreation]).then(function (results) {
+ var creation = new dtos.ExperimentCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(experimentTypeCode))
+ creation.setCode(code)
+ creation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"))
+ creation.setProperty(propertyTypeCode, ["20130412140147735-20", "20130424134657597-433"])
+ return facade.createExperiments([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.ExperimentUpdate()
+ update.setExperimentId(permId)
+ update.setProperty(propertyTypeCode, "20130412140147736-21")
+ return facade.updateExperiments([update])
+ }
+
+ var fCheck = function (experiment: openbis.Experiment) {
+ c.assertEqual(experiment.getCode(), code, "Experiment code")
+ c.assertEqual(experiment.getType().getCode(), experimentTypeCode, "Type code")
+ c.assertEqual(experiment.getProject().getCode(), "TEST-PROJECT", "Project code")
+ c.assertEqual(experiment.getProject().getSpace().getCode(), "TEST", "Space code")
+ c.assertEqual(
+ experiment.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(),
+ "/PLATONIC/SCREENING-EXAMPLES/PLATE-2",
+ "Sample property"
+ )
+
+ var history = experiment.getHistory().filter((x: any) => x.propertyName == propertyTypeCode && x.validTo)
+ c.assertEqual(history.length, 2, "Previous sample property name")
+ c.assertEqual(
+ history
+ .map((x: any) => x.propertyValue)
+ .sort()
+ .toString(),
+ ["20130412140147735-20", "20130424134657597-433"].toString(),
+ "Previous sample property value"
+ )
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExperiment, fCheck)
+ })
+
+ QUnit.test("updateSampleTypes()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("SAMPLE_TYPE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("initial value")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+
+ var creation = new dtos.SampleTypeCreation()
+ creation.setCode(code)
+ creation.setDescription("a new description")
+ creation.setGeneratedCodePrefix("TEST_PREFIX")
+ creation.setPropertyAssignments([assignmentCreation])
+ creation.setMetaData({ sample_type_update: "old_value", sample_type_delete: "del_value" })
+
+ return facade.createSampleTypes([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section 2")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("1.0")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+ var update = new dtos.SampleTypeUpdate()
+ update.setTypeId(permId)
+ update.setAutoGeneratedCode(true)
+ update.setSubcodeUnique(true)
+ update.setDescription("another new description")
+ update.setGeneratedCodePrefix("TEST_PREFIX2")
+ update.setListable(true)
+ update.setShowContainer(true)
+ update.setShowParents(true)
+ update.setShowParentMetadata(true)
+ update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"))
+ update.getPropertyAssignments().add([assignmentCreation])
+ update.getPropertyAssignments().remove([new dtos.PropertyAssignmentPermId(permId, new dtos.PropertyTypePermId("DESCRIPTION"))])
+ update.getMetaData().put("sample_type_update", "new_value")
+ update.getMetaData().add([{ sample_type_add: "add_value" }])
+ update.getMetaData().remove(["sample_type_delete"])
+ return facade.updateSampleTypes([update])
+ }
+
+ var fCheck = function (type: openbis.SampleType) {
+ c.assertEqual(type.getCode(), code, "Type code")
+ c.assertEqual(type.getPermId().getPermId(), code, "Type perm id")
+ c.assertEqual(type.getDescription(), "another new description", "Description")
+ c.assertEqual(type.isAutoGeneratedCode(), true, "AutoGeneratedCode")
+ c.assertEqual(type.isSubcodeUnique(), true, "SubcodeUnique")
+ c.assertEqual(type.getGeneratedCodePrefix(), "TEST_PREFIX2", "GeneratedCodePrefix")
+ c.assertEqual(type.isListable(), true, "Listable")
+ c.assertEqual(type.isShowContainer(), true, "ShowContainer")
+ c.assertEqual(type.isShowParents(), true, "ShowParents")
+ c.assertEqual(type.isShowParentMetadata(), true, "ShowParentMetadata")
+
+ c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count")
+
+ var assignment = type.getPropertyAssignments()[0]
+
+ c.assertEqual(assignment.getSection(), "test section 2", "Assignment section")
+ c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal")
+ c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code")
+ c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory")
+ c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView")
+ c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms")
+
+ var metaData = type.getMetaData()
+ c.assertEqual(metaData["sample_type_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["sample_type_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["sample_type_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSampleType, fCheck)
+ })
+
+ QUnit.test("updateSamples()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("SAMPLE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ creation.setTagIds([new dtos.TagCode("CREATE_JSON_TAG")])
+ creation.setMetaData({ sample_update: "old_value", sample_delete: "del_value" })
+ return facade.createSamples([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ update.getTagIds().remove([new dtos.TagCode("CREATE_JSON_TAG")])
+ update.getTagIds().add([new dtos.TagCode("CREATE_JSON_TAG_2")])
+ update.getTagIds().add([new dtos.TagCode("CREATE_JSON_TAG_3")])
+ update.getMetaData().put("sample_update", "new_value")
+ update.getMetaData().add([{ sample_add: "add_value" }])
+ update.getMetaData().remove(["sample_delete"])
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code")
+ c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code")
+ c.assertObjectsCount(sample.getTags(), 2)
+ c.assertObjectsWithValues(sample.getTags(), "code", ["CREATE_JSON_TAG_2", "CREATE_JSON_TAG_3"])
+
+ var metaData = sample.getMetaData()
+ c.assertEqual(metaData["sample_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["sample_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["sample_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateSamples() turn project sample into a space sample", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("SAMPLE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ creation.setProjectId(new dtos.ProjectIdentifier("/TEST/TEST-PROJECT"))
+ return facade.createSamples([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ update.setProjectId(null)
+ update.setSpaceId(new dtos.SpacePermId("PLATONIC"))
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code")
+ c.assertEqual(sample.getIdentifier(), "/PLATONIC/" + code, "Identifier")
+ c.assertEqual(sample.getProject(), null, "Project")
+ c.assertEqual(sample.getSpace().getCode(), "PLATONIC", "Space code")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateSamples() turn space sample into a project sample", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("SAMPLE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ return facade.createSamples([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ update.setProjectId(new dtos.ProjectIdentifier("/PLATONIC/SCREENING-EXAMPLES"))
+ update.setSpaceId(new dtos.SpacePermId("PLATONIC"))
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code")
+ c.assertEqual(sample.getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES/" + code, "Identifier")
+ c.assertEqual(sample.getProject().getIdentifier(), "/PLATONIC/SCREENING-EXAMPLES", "Project")
+ c.assertEqual(sample.getSpace().getCode(), "PLATONIC", "Space code")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateSamples() with annotated parent and child", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("SAMPLE")
+ var parentId = new dtos.SampleIdentifier("/TEST/TEST-SAMPLE-1")
+ var childId = new dtos.SampleIdentifier("/TEST/TEST-PROJECT/TEST-SAMPLE-2")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId("UNKNOWN"))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ creation.setParentIds([parentId])
+ creation.setChildIds([childId])
+ creation.relationship(parentId).addParentAnnotation("type", "father").addChildAnnotation("type", "daughter")
+ creation
+ .relationship(childId)
+ .addParentAnnotation("type", "mother")
+ .addChildAnnotation("type", "son")
+ .addParentAnnotation("color", "red")
+ return facade.createSamples([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ var parentRelationShip = update.relationship(parentId)
+ parentRelationShip.removeChildAnnotations(["type"]).addChildAnnotation("color", "blue").addParentAnnotation("color", "yellow")
+ var childRelationShip = update.relationship(childId)
+ childRelationShip.addParentAnnotation("color", "green").removeParentAnnotations(["type"]).addChildAnnotation("color", "black")
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), "UNKNOWN", "Type code")
+ c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code")
+ var parent = sample.getParents()[0]
+ c.assertEqual(parent.getIdentifier().getIdentifier(), parentId.getIdentifier(), "Parent")
+ var parentRelationship = sample.getParentRelationship(parent.getPermId())
+ c.assertEqualDictionary(parentRelationship.getChildAnnotations(), { color: "blue" }, "Parent -> child annotations")
+ c.assertEqualDictionary(
+ parentRelationship.getParentAnnotations(),
+ { type: "father", color: "yellow" },
+ "Parent -> parent annotations"
+ )
+ var child = sample.getChildren()[0]
+ c.assertEqual(child.getIdentifier().getIdentifier(), childId.getIdentifier(), "Child")
+ var childRelationship = sample.getChildRelationship(child.getPermId())
+ c.assertEqualDictionary(childRelationship.getChildAnnotations(), { type: "son", color: "black" }, "Child -> child annotations")
+ c.assertEqualDictionary(childRelationship.getParentAnnotations(), { color: "green" }, "Child -> parent annotations")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateSamples() change property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var sampleTypeCode = c.generateId("SAMPLE_TYPE")
+ var code = c.generateId("SAMPLE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var sampleTypeCreation = new dtos.SampleTypeCreation()
+ sampleTypeCreation.setCode(sampleTypeCode)
+ sampleTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createSampleTypes([sampleTypeCreation]).then(function (results) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(sampleTypeCode))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ creation.setProperty(propertyTypeCode, "20130412140147735-20")
+ return facade.createSamples([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ update.setProperty(propertyTypeCode, "20130412140147736-21")
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), sampleTypeCode, "Type code")
+ c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code")
+ c.assertEqual(
+ sample.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(),
+ "/PLATONIC/SCREENING-EXAMPLES/PLATE-2",
+ "Sample property"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>sample.getHistory()[0]).getPropertyName(),
+ propertyTypeCode,
+ "Previous sample property name"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>sample.getHistory()[0]).getPropertyValue(),
+ "20130412140147735-20",
+ "Previous sample property value"
+ )
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateSamples() change multi-value property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var sampleTypeCode = c.generateId("SAMPLE_TYPE")
+ var code = c.generateId("SAMPLE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ propertyTypeCreation.setMultiValue(true)
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var sampleTypeCreation = new dtos.SampleTypeCreation()
+ sampleTypeCreation.setCode(sampleTypeCode)
+ sampleTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createSampleTypes([sampleTypeCreation]).then(function (results) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(sampleTypeCode))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ creation.setProperty(propertyTypeCode, ["20130412140147735-20", "20130424134657597-433"])
+ return facade.createSamples([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ update.setProperty(propertyTypeCode, "20130412140147736-21")
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), sampleTypeCode, "Type code")
+ c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code")
+ c.assertEqual(
+ sample.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(),
+ "/PLATONIC/SCREENING-EXAMPLES/PLATE-2",
+ "Sample property"
+ )
+ var history = sample.getHistory().filter((x: any) => x.propertyName == propertyTypeCode && x.validTo)
+ c.assertEqual(history.length, 2, "Previous sample property name")
+ c.assertEqual(
+ history
+ .map((x: any) => x.propertyValue)
+ .sort()
+ .toString(),
+ ["20130412140147735-20", "20130424134657597-433"].toString(),
+ "Previous sample property value"
+ )
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateSamples() remove property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var sampleTypeCode = c.generateId("SAMPLE_TYPE")
+ var code = c.generateId("SAMPLE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var sampleTypeCreation = new dtos.SampleTypeCreation()
+ sampleTypeCreation.setCode(sampleTypeCode)
+ sampleTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createSampleTypes([sampleTypeCreation]).then(function (results) {
+ var creation = new dtos.SampleCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(sampleTypeCode))
+ creation.setCode(code)
+ creation.setSpaceId(new dtos.SpacePermId("TEST"))
+ creation.setProperty(propertyTypeCode, "20130412140147735-20")
+ return facade.createSamples([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SampleUpdate()
+ update.setSampleId(permId)
+ update.setProperty(propertyTypeCode, null)
+ return facade.updateSamples([update])
+ }
+
+ var fCheck = function (sample: openbis.Sample) {
+ c.assertEqual(sample.getCode(), code, "Sample code")
+ c.assertEqual(sample.getType().getCode(), sampleTypeCode, "Type code")
+ c.assertEqual(sample.getSpace().getCode(), "TEST", "Space code")
+ c.assertObjectsCount(Object.keys(sample.getSampleProperties()), 0)
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>sample.getHistory()[0]).getPropertyName(),
+ propertyTypeCode,
+ "Previous sample property name"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>sample.getHistory()[0]).getPropertyValue(),
+ "20130412140147735-20",
+ "Previous sample property value"
+ )
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSample, fCheck)
+ })
+
+ QUnit.test("updateDataSetTypes()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("DATA_SET_TYPE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("initial value")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+
+ var creation = new dtos.DataSetTypeCreation()
+ creation.setCode(code)
+ creation.setDescription("a new description")
+ creation.setPropertyAssignments([assignmentCreation])
+ creation.setMetaData({ dataset_type_update: "old_value", dataset_type_delete: "del_value" })
+
+ return facade.createDataSetTypes([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section 2")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("1.0")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+ var update = new dtos.DataSetTypeUpdate()
+ update.setTypeId(permId)
+ update.setDescription("another new description")
+ update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"))
+ update.setMainDataSetPattern(".*\\.jpg")
+ update.setMainDataSetPath("original/images/")
+ update.setDisallowDeletion(true)
+ update.getPropertyAssignments().set([assignmentCreation])
+ update.getMetaData().put("dataset_type_update", "new_value")
+ update.getMetaData().add([{ dataset_type_add: "add_value" }])
+ update.getMetaData().remove(["dataset_type_delete"])
+ return facade.updateDataSetTypes([update])
+ }
+
+ var fCheck = function (type: openbis.DataSetType) {
+ c.assertEqual(type.getCode(), code, "Type code")
+ c.assertEqual(type.getPermId().getPermId(), code, "Type perm id")
+ c.assertEqual(type.getDescription(), "another new description", "Description")
+ c.assertEqual(type.getMainDataSetPattern(), ".*\\.jpg", "Main data set pattern")
+ c.assertEqual(type.getMainDataSetPath(), "original/images/", "Main data set path")
+ c.assertEqual(type.isDisallowDeletion(), true, "Disallow deletion")
+
+ c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count")
+
+ var assignment = type.getPropertyAssignments()[0]
+
+ c.assertEqual(assignment.getSection(), "test section 2", "Assignment section")
+ c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal")
+ c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code")
+ c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory")
+ c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView")
+ c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms")
+
+ var metaData = type.getMetaData()
+ c.assertEqual(metaData["dataset_type_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["dataset_type_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["dataset_type_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSetType, fCheck)
+ })
+
+ QUnit.test("updateDataSets()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = null
+
+ var fCreate = function (facade: openbis.openbis) {
+ return c.createDataSet(facade).then(function (permId) {
+ code = permId.getPermId()
+ return [permId]
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var physicalUpdate = new dtos.PhysicalDataUpdate()
+ physicalUpdate.setFileFormatTypeId(new dtos.FileFormatTypePermId("TIFF"))
+ physicalUpdate.setArchivingRequested(true)
+
+ var update = new dtos.DataSetUpdate()
+ update.setDataSetId(permId)
+ update.setProperty("NOTES", "new 409 description")
+ update.setPhysicalData(physicalUpdate)
+
+ return facade.updateDataSets([update])
+ }
+
+ var fCheck = function (dataSet: openbis.DataSet) {
+ c.assertEqual(dataSet.getCode(), code, "Code")
+ c.assertEqual(dataSet.getProperties()["NOTES"], "new 409 description", "Property NOTES")
+ c.assertEqual(dataSet.getPhysicalData().getFileFormatType().getCode(), "TIFF", "File format type")
+ c.assertEqual(dataSet.getPhysicalData().isArchivingRequested(), true, "Archiving requested")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck)
+ })
+
+ QUnit.test("updateDataSet() change property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var dataSetTypeCode = c.generateId("DATA_SET_TYPE")
+ var code = c.generateId("DATA_SET")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var dataSetTypeCreation = new dtos.DataSetTypeCreation()
+ dataSetTypeCreation.setCode(dataSetTypeCode)
+ dataSetTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createDataSetTypes([dataSetTypeCreation]).then(function (results) {
+ var creation = new dtos.DataSetCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(dataSetTypeCode))
+ creation.setCode(code)
+ creation.setDataSetKind(dtos.DataSetKind.CONTAINER)
+ creation.setDataStoreId(new dtos.DataStorePermId("DSS1"))
+ creation.setExperimentId(new dtos.ExperimentIdentifier("/TEST/TEST-PROJECT/TEST-EXPERIMENT"))
+ creation.setProperty(propertyTypeCode, "20130412140147735-20")
+ creation.setMetaData({ dataset_update: "old_value", dataset_delete: "del_value" })
+ return facade.createDataSets([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.DataSetUpdate()
+ update.setDataSetId(permId)
+ update.setProperty(propertyTypeCode, "20130412140147736-21")
+ update.getMetaData().put("dataset_update", "new_value")
+ update.getMetaData().add([{ dataset_add: "add_value" }])
+ update.getMetaData().remove(["dataset_delete"])
+ return facade.updateDataSets([update])
+ }
+
+ var fCheck = function (dataSet: openbis.DataSet) {
+ c.assertEqual(dataSet.getCode(), code, "Data set code")
+ c.assertEqual(dataSet.getType().getCode(), dataSetTypeCode, "Type code")
+ c.assertEqual(
+ dataSet.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(),
+ "/PLATONIC/SCREENING-EXAMPLES/PLATE-2",
+ "Sample property"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>dataSet.getHistory()[0]).getPropertyName(),
+ propertyTypeCode,
+ "Previous sample property name"
+ )
+ c.assertEqual(
+ (<openbis.PropertyHistoryEntry>dataSet.getHistory()[0]).getPropertyValue(),
+ "20130412140147735-20",
+ "Previous sample property value"
+ )
+
+ var metaData = dataSet.getMetaData()
+ c.assertEqual(metaData["dataset_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["dataset_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["dataset_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck)
+ })
+
+ QUnit.test("updateDataSet() change multi-value property of type SAMPLE", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var dataSetTypeCode = c.generateId("DATA_SET_TYPE")
+ var code = c.generateId("DATA_SET")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ propertyTypeCreation.setMultiValue(true)
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var dataSetTypeCreation = new dtos.DataSetTypeCreation()
+ dataSetTypeCreation.setCode(dataSetTypeCode)
+ dataSetTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createDataSetTypes([dataSetTypeCreation]).then(function (results) {
+ var creation = new dtos.DataSetCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(dataSetTypeCode))
+ creation.setCode(code)
+ creation.setDataSetKind(dtos.DataSetKind.CONTAINER)
+ creation.setDataStoreId(new dtos.DataStorePermId("DSS1"))
+ creation.setExperimentId(new dtos.ExperimentIdentifier("/TEST/TEST-PROJECT/TEST-EXPERIMENT"))
+ creation.setProperty(propertyTypeCode, ["20130412140147735-20", "20130424134657597-433"])
+ creation.setMetaData({ dataset_update: "old_value", dataset_delete: "del_value" })
+ return facade.createDataSets([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.DataSetUpdate()
+ update.setDataSetId(permId)
+ update.setProperty(propertyTypeCode, "20130412140147736-21")
+ update.getMetaData().put("dataset_update", "new_value")
+ update.getMetaData().add([{ dataset_add: "add_value" }])
+ update.getMetaData().remove(["dataset_delete"])
+ return facade.updateDataSets([update])
+ }
+
+ var fCheck = function (dataSet: openbis.DataSet) {
+ c.assertEqual(dataSet.getCode(), code, "Data set code")
+ c.assertEqual(dataSet.getType().getCode(), dataSetTypeCode, "Type code")
+ c.assertEqual(
+ dataSet.getSampleProperties()[propertyTypeCode][0].getIdentifier().getIdentifier(),
+ "/PLATONIC/SCREENING-EXAMPLES/PLATE-2",
+ "Sample property"
+ )
+ var history = dataSet.getHistory().filter((x: any) => x.propertyName == propertyTypeCode && x.validTo)
+ c.assertEqual(history.length, 2, "Previous sample property name")
+ c.assertEqual(
+ history
+ .map((x: any) => x.propertyValue)
+ .sort()
+ .toString(),
+ ["20130412140147735-20", "20130424134657597-433"].toString(),
+ "Previous sample property value"
+ )
+
+ var metaData = dataSet.getMetaData()
+ c.assertEqual(metaData["dataset_update"], "new_value", "Metadata update")
+ c.assertEqual(metaData["dataset_add"], "add_value", "Metadata add")
+ c.assertEqual(metaData["dataset_delete"], undefined, "Metadata delete")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck)
+ })
+
+ QUnit.test("updateDataSets() link data set", function (assert) {
+ var c = new common(assert, dtos)
+ var code = "20160613195437233-437"
+
+ var fCreate = function (facade: openbis.openbis) {
+ return [new dtos.DataSetPermId(code)]
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var linkUpdate = new dtos.LinkedDataUpdate()
+ linkUpdate.setExternalCode("new code")
+
+ var update = new dtos.DataSetUpdate()
+ update.setDataSetId(permId)
+ update.setLinkedData(linkUpdate)
+
+ return facade.updateDataSets([update])
+ }
+
+ var fCheck = function (dataSet: openbis.DataSet) {
+ c.assertEqual(dataSet.getCode(), code, "Code")
+ c.assertEqual(dataSet.getLinkedData().getExternalCode(), "new code", "External code")
+ c.assertEqual(dataSet.getLinkedData().getExternalDms().getPermId().toString(), "DMS_1", "External DMS")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck)
+ })
+
+ QUnit.test("updateDataSets() add content copy to link data set", function (assert) {
+ var c = new common(assert, dtos)
+ var edmsId = null
+ var code = null
+
+ var fCreate = function (facade: openbis.openbis) {
+ return c.createLinkDataSet(facade, "root/path", "my-hash", "my-repository-id").then(function (permId) {
+ code = permId.getPermId()
+ return [permId]
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ return c.findDataSet(facade, permId).then(function (dataSet) {
+ var contentCopy = dataSet.getLinkedData().getContentCopies()[0]
+ edmsId = contentCopy.getExternalDms().getPermId()
+ var contentCopyListUpdateValue = new dtos.ContentCopyListUpdateValue()
+ var contentCopyCreation = new dtos.ContentCopyCreation()
+ contentCopyCreation.setExternalDmsId(edmsId)
+ contentCopyCreation.setPath("my/data/path")
+ contentCopyCreation.setGitCommitHash("my-git-hash")
+ contentCopyCreation.setGitRepositoryId("my-git-repository-id")
+ contentCopyListUpdateValue.add([contentCopyCreation])
+ contentCopyListUpdateValue.remove([contentCopy.getId()])
+
+ var linkUpdate = new dtos.LinkedDataUpdate()
+ linkUpdate.setContentCopyActions(contentCopyListUpdateValue.getActions())
+
+ var update = new dtos.DataSetUpdate()
+ update.setDataSetId(permId)
+ update.setLinkedData(linkUpdate)
+
+ return facade.updateDataSets([update])
+ })
+ }
+
+ var fCheck = function (dataSet: openbis.DataSet) {
+ c.assertEqual(dataSet.getCode(), code, "Code")
+ var contentCopies = dataSet.getLinkedData().getContentCopies()
+ c.assertEqual(contentCopies.length, 1, "Number of content copies")
+ c.assertEqual(contentCopies[0].getExternalDms().getPermId().toString(), edmsId.toString(), "External DMS")
+ c.assertEqual(contentCopies[0].getExternalCode(), null, "External code")
+ c.assertEqual(contentCopies[0].getPath(), "/my/data/path", "Path")
+ c.assertEqual(contentCopies[0].getGitCommitHash(), "my-git-hash", "Git commit hash")
+ c.assertEqual(contentCopies[0].getGitRepositoryId(), "my-git-repository-id", "Git repository id")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck)
+ })
+
+ QUnit.test("updateMaterialTypes()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("MATERIAL_TYPE")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("DESCRIPTION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("initial value")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+
+ var creation = new dtos.MaterialTypeCreation()
+ creation.setCode(code)
+ creation.setDescription("a new description")
+ creation.setPropertyAssignments([assignmentCreation])
+
+ return facade.createMaterialTypes([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setSection("test section 2")
+ assignmentCreation.setOrdinal(10)
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId("VERSION"))
+ assignmentCreation.setPluginId(new dtos.PluginPermId("Diff_time"))
+ assignmentCreation.setMandatory(true)
+ assignmentCreation.setInitialValueForExistingEntities("1.0")
+ assignmentCreation.setShowInEditView(true)
+ assignmentCreation.setShowRawValueInForms(true)
+ var update = new dtos.MaterialTypeUpdate()
+ update.setTypeId(permId)
+ update.setDescription("another new description")
+ update.setValidationPluginId(new dtos.PluginPermId("Has_Parents"))
+ update.getPropertyAssignments().add([assignmentCreation])
+ update.getPropertyAssignments().remove([new dtos.PropertyAssignmentPermId(permId, new dtos.PropertyTypePermId("DESCRIPTION"))])
+ return facade.updateMaterialTypes([update])
+ }
+
+ var fCheck = function (type: openbis.MaterialType) {
+ c.assertEqual(type.getCode(), code, "Type code")
+ c.assertEqual(type.getPermId().getPermId(), code, "Type perm id")
+ c.assertEqual(type.getDescription(), "another new description", "Description")
+
+ c.assertEqual(type.getPropertyAssignments().length, 1, "Assignments count")
+
+ var assignment = type.getPropertyAssignments()[0]
+
+ c.assertEqual(assignment.getSection(), "test section 2", "Assignment section")
+ c.assertEqual(assignment.getOrdinal(), 10, "Assignment ordinal")
+ c.assertEqual(assignment.getPropertyType().getCode(), "VERSION", "Assignment property type code")
+ c.assertEqual(assignment.isMandatory(), true, "Assignment mandatory")
+ c.assertEqual(assignment.isShowInEditView(), true, "Assignment ShowInEditView")
+ c.assertEqual(assignment.isShowRawValueInForms(), true, "Assignment ShowRawValueInForms")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findMaterialType, fCheck)
+ })
+
+ QUnit.test("updateMaterials()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("MATERIAL")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var materialCreation = new dtos.MaterialCreation()
+ materialCreation.setTypeId(new dtos.EntityTypePermId("COMPOUND"))
+ materialCreation.setCode(code)
+ materialCreation.setProperty("DESCRIPTION", "Metal")
+ return facade.createMaterials([materialCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var materialUpdate = new dtos.MaterialUpdate()
+ materialUpdate.setMaterialId(permId)
+ materialUpdate.setProperty("DESCRIPTION", "Alloy")
+ return facade.updateMaterials([materialUpdate])
+ }
+
+ var fCheck = function (material: openbis.Material) {
+ c.assertEqual(material.getCode(), code, "Material code")
+ c.assertEqual(material.getType().getCode(), "COMPOUND", "Type code")
+ var properties = material.getProperties()
+ c.assertEqual(properties["DESCRIPTION"], "Alloy", "Property DESCRIPTION")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findMaterial, fCheck)
+ })
+
+ QUnit.test("updatePropertyTypes()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("PROPERTY_TYPE")
+ var description = "Description of " + code
+ var label = "Label of " + code
+ var metaData1 = { greetings: "hello test" }
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.PropertyTypeCreation()
+ creation.setCode(code)
+ creation.setLabel("Testing")
+ creation.setDescription("testing")
+ creation.setDataType(dtos.DataType.VARCHAR)
+ creation.setMetaData(metaData1)
+ return facade.createPropertyTypes([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.PropertyTypeUpdate()
+ update.setTypeId(new dtos.PropertyTypePermId(code))
+ update.setDescription(description)
+ update.setLabel(label)
+ var metaData = update.getMetaData()
+ metaData.remove(["greetings"])
+ metaData.put("valid", "true")
+ return facade.updatePropertyTypes([update])
+ }
+
+ var fCheck = function (propertyType: openbis.PropertyType) {
+ c.assertEqual(propertyType.getCode(), code, "Code")
+ c.assertEqual(propertyType.getDescription(), description, "Description")
+ c.assertEqual(propertyType.getLabel(), label, "Label")
+ c.assertEqualDictionary(propertyType.getMetaData(), { valid: "true" }, "Meta data")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPropertyType, fCheck)
+ })
+
+ QUnit.test("updatePropertyTypes() convert data type ", function (assert) {
+ var c = new common(assert, dtos)
+ var propertyTypeCode = c.generateId("PROPERTY_TYPE")
+ var dataSetTypeCode = c.generateId("DATA_SET_TYPE")
+ var code = c.generateId("DATA_SET")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var propertyTypeCreation = new dtos.PropertyTypeCreation()
+ propertyTypeCreation.setCode(propertyTypeCode)
+ propertyTypeCreation.setDescription("hello")
+ propertyTypeCreation.setDataType(dtos.DataType.SAMPLE)
+ propertyTypeCreation.setLabel("Test Property Type")
+ return facade.createPropertyTypes([propertyTypeCreation]).then(function (results) {
+ var assignmentCreation = new dtos.PropertyAssignmentCreation()
+ assignmentCreation.setPropertyTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ var dataSetTypeCreation = new dtos.DataSetTypeCreation()
+ dataSetTypeCreation.setCode(dataSetTypeCode)
+ dataSetTypeCreation.setPropertyAssignments([assignmentCreation])
+ return facade.createDataSetTypes([dataSetTypeCreation]).then(function (results) {
+ var creation = new dtos.DataSetCreation()
+ creation.setTypeId(new dtos.EntityTypePermId(dataSetTypeCode))
+ creation.setCode(code)
+ creation.setDataSetKind(dtos.DataSetKind.CONTAINER)
+ creation.setDataStoreId(new dtos.DataStorePermId("DSS1"))
+ creation.setExperimentId(new dtos.ExperimentIdentifier("/TEST/TEST-PROJECT/TEST-EXPERIMENT"))
+ creation.setProperty(propertyTypeCode, "20130412140147735-20")
+ return facade.createDataSets([creation])
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.PropertyTypeUpdate()
+ update.setTypeId(new dtos.PropertyTypePermId(propertyTypeCode))
+ update.convertToDataType(dtos.DataType.VARCHAR)
+ return facade.updatePropertyTypes([update])
+ }
+
+ var fCheck = function (dataSet: openbis.DataSet) {
+ c.assertEqual(dataSet.getCode(), code, "Data set code")
+ c.assertEqual(dataSet.getType().getCode(), dataSetTypeCode, "Type code")
+ c.assertObjectsCount(Object.keys(dataSet.getSampleProperties()), 0)
+ c.assertEqual(dataSet.getProperties()[propertyTypeCode], "20130412140147735-20", "Property")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findDataSet, fCheck)
+ })
+
+ QUnit.test("updatePlugins()", function (assert) {
+ var c = new common(assert, dtos)
+ var name = c.generateId("PLUGIN")
+ var description = "Description of " + name
+ var script = "print 'hello'"
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.PluginCreation()
+ creation.setName(name)
+ creation.setScript("pass")
+ creation.setDescription("old description")
+ creation.setAvailable(false)
+ creation.setPluginType(dtos.PluginType.MANAGED_PROPERTY)
+ return facade.createPlugins([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.PluginUpdate()
+ update.setPluginId(new dtos.PluginPermId(name))
+ update.setDescription(description)
+ update.setScript(script)
+ return facade.updatePlugins([update])
+ }
+
+ var fCheck = function (plugin: openbis.Plugin) {
+ c.assertEqual(plugin.getName(), name, "Name")
+ c.assertEqual(plugin.getDescription(), description, "Description")
+ c.assertEqual(plugin.getScript(), script, "Script")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPlugin, fCheck)
+ })
+
+ QUnit.test("updateVocabularies()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("VOCABULARY")
+ var description = "Description of " + code
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.VocabularyCreation()
+ creation.setCode(code)
+ return facade.createVocabularies([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.VocabularyUpdate()
+ update.setVocabularyId(permId)
+ update.setDescription(description)
+ update.setChosenFromList(true)
+ update.setUrlTemplate("https://www.ethz.ch")
+ return facade.updateVocabularies([update])
+ }
+
+ var fCheck = function (vocabulary: openbis.Vocabulary) {
+ c.assertEqual(vocabulary.getCode(), code, "Code")
+ c.assertEqual(vocabulary.getPermId().getPermId(), code, "Perm id")
+ c.assertEqual(vocabulary.getDescription(), description, "Description")
+ c.assertEqual(vocabulary.getUrlTemplate(), "https://www.ethz.ch", "URL template")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findVocabulary, fCheck)
+ })
+
+ QUnit.test("updateVocabularyTerms()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("VOCABULARY_TERM")
+ var description = "Description of " + code
+
+ var fCreate = function (facade: openbis.openbis) {
+ var termCreation = new dtos.VocabularyTermCreation()
+ termCreation.setVocabularyId(new dtos.VocabularyPermId("TEST-VOCABULARY"))
+ termCreation.setCode(code)
+ return facade.createVocabularyTerms([termCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var termUpdate = new dtos.VocabularyTermUpdate()
+ termUpdate.setVocabularyTermId(permId)
+ termUpdate.setDescription(description)
+ return facade.updateVocabularyTerms([termUpdate])
+ }
+
+ var fCheck = function (term: openbis.VocabularyTerm) {
+ c.assertEqual(term.getCode(), code, "Term code")
+ c.assertEqual(term.getVocabulary().getCode(), "TEST-VOCABULARY", "Term vocabulary code")
+ c.assertEqual(term.getDescription(), description, "Term description")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findVocabularyTerm, fCheck)
+ })
+
+ QUnit.test("updateExternalDms()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("EDMS")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var edmsCreation = new dtos.ExternalDmsCreation()
+ edmsCreation.setCode(code)
+ edmsCreation.setLabel("Test EDMS")
+ edmsCreation.setAddressType(dtos.ExternalDmsAddressType.OPENBIS)
+ edmsCreation.setAddress("https://my-site/q=${term}")
+ return facade.createExternalDataManagementSystems([edmsCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var edmsUpdate = new dtos.ExternalDmsUpdate()
+ edmsUpdate.setExternalDmsId(permId)
+ edmsUpdate.setLabel("Test EDMS 2")
+ edmsUpdate.setAddress("https://my-second-site/q=${term}")
+ return facade.updateExternalDataManagementSystems([edmsUpdate])
+ }
+
+ var fCheck = function (edms: openbis.ExternalDms) {
+ c.assertEqual(edms.getCode(), code, "EDMS code")
+ c.assertEqual(edms.getLabel(), "Test EDMS 2", "EDMS label")
+ c.assertEqual(edms.getAddress(), "https://my-second-site/q=${term}", "EDMS address")
+ c.assertEqual(edms.getUrlTemplate(), "https://my-second-site/q=${term}", "EDMS URL template")
+ c.assertEqual(edms.getAddressType(), "OPENBIS", "EDMS address type")
+ c.assertEqual(edms.isOpenbis(), true, "EDMS is openBIS")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findExternalDms, fCheck)
+ })
+
+ QUnit.test("updateTags()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("TAG")
+ var description = "Description of " + code
+
+ var fCreate = function (facade: openbis.openbis) {
+ var tagCreation = new dtos.TagCreation()
+ tagCreation.setCode(code)
+ return facade.createTags([tagCreation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var tagUpdate = new dtos.TagUpdate()
+ tagUpdate.setTagId(permId)
+ tagUpdate.setDescription(description)
+ return facade.updateTags([tagUpdate])
+ }
+
+ var fCheck = function (tag: openbis.Tag) {
+ c.assertEqual(tag.getCode(), code, "Tag code")
+ c.assertEqual(tag.getDescription(), description, "Tag description")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findTag, fCheck)
+ })
+
+ QUnit.test("updateAuthorizationGroups()", function (assert) {
+ var c = new common(assert, dtos)
+ var code = c.generateId("AUTHORIZATION_GROUP")
+ var description = "Description of " + code
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.AuthorizationGroupCreation()
+ creation.setCode(code)
+ creation.setUserIds([new dtos.PersonPermId("power_user")])
+ return facade.createAuthorizationGroups([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.AuthorizationGroupUpdate()
+ update.setAuthorizationGroupId(permId)
+ update.setDescription(description)
+ update.getUserIds().remove([new dtos.PersonPermId("power_user")])
+ update.getUserIds().add([new dtos.PersonPermId("admin"), new dtos.Me()])
+ return facade.updateAuthorizationGroups([update])
+ }
+
+ var fCheck = function (group: openbis.AuthorizationGroup) {
+ c.assertEqual(group.getCode(), code, "Code")
+ c.assertEqual(group.getDescription(), description, "Description")
+ var users = $.map(group.getUsers(), function (user) {
+ return user.getUserId()
+ })
+ users.sort()
+ c.assertEqual(users.toString(), "admin,openbis_test_js", "Users")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findAuthorizationGroup, fCheck)
+ })
+
+ QUnit.test("updatePersons()", function (assert) {
+ var c = new common(assert, dtos)
+ var userId = c.generateId("USER")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.PersonCreation()
+ creation.setUserId(userId)
+ return facade.createPersons([creation]).then(function (permIds) {
+ var creation = new dtos.RoleAssignmentCreation()
+ creation.setUserId(permIds[0])
+ creation.setRole(dtos.Role.ADMIN)
+ return facade.createRoleAssignments([creation]).then(function (assignmentId) {
+ return permIds
+ })
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.PersonUpdate()
+ update.setUserId(permId)
+ update.setSpaceId(new dtos.SpacePermId("TEST"))
+ return facade.updatePersons([update])
+ }
+
+ var fCheck = function (person: openbis.Person) {
+ c.assertEqual(person.getUserId(), userId, "User id")
+ c.assertEqual(person.getSpace().getCode(), "TEST", "Home space")
+ c.assertEqual(person.isActive(), true, "Active")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck)
+ })
+
+ QUnit.test("updatePersons() deactivate", function (assert) {
+ var c = new common(assert, dtos)
+ var userId = c.generateId("USER")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.PersonCreation()
+ creation.setUserId(userId)
+ return facade.createPersons([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.PersonUpdate()
+ update.setUserId(permId)
+ update.deactivate()
+ return facade.updatePersons([update])
+ }
+
+ var fCheck = function (person: openbis.Person) {
+ c.assertEqual(person.getUserId(), userId, "User id")
+ c.assertEqual(person.isActive(), false, "Active")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck)
+ })
+
+ QUnit.test("updatePersons() deactivate and activate", function (assert) {
+ var c = new common(assert, dtos)
+ var userId = c.generateId("USER")
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.PersonCreation()
+ creation.setUserId(userId)
+ return facade.createPersons([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var deactivateUpdate = new dtos.PersonUpdate()
+ deactivateUpdate.setUserId(permId)
+ deactivateUpdate.deactivate()
+ return facade.updatePersons([deactivateUpdate]).then(function () {
+ var activateUpdate = new dtos.PersonUpdate()
+ activateUpdate.setUserId(permId)
+ activateUpdate.activate()
+ return facade.updatePersons([activateUpdate])
+ })
+ }
+
+ var fCheck = function (person: openbis.Person) {
+ c.assertEqual(person.getUserId(), userId, "User id")
+ c.assertEqual(person.isActive(), true, "Active")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck)
+ })
+
+ QUnit.test("updatePersons() webAppSettings", function (assert) {
+ var c = new common(assert, dtos)
+ var userId = c.generateId("USER")
+
+ var WEB_APP_1 = "webApp1"
+ var WEB_APP_2 = "webApp2"
+ var WEB_APP_3 = "webApp3"
+ var WEB_APP_4 = "webApp4"
+
+ var fCreate = function (facade: openbis.openbis) {
+ var creation = new dtos.PersonCreation()
+ creation.setUserId(userId)
+ return facade.createPersons([creation])
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.PersonUpdate()
+ update.setUserId(permId)
+
+ var webApp1Update = update.getWebAppSettings(WEB_APP_1)
+ webApp1Update.add([new dtos.WebAppSettingCreation("n1a", "v1a")])
+ webApp1Update.add([new dtos.WebAppSettingCreation("n1b", "v1b")])
+
+ var webApp2Update = update.getWebAppSettings(WEB_APP_2)
+ webApp2Update.add([new dtos.WebAppSettingCreation("n2a", "v2a")])
+
+ var webApp3Update = update.getWebAppSettings(WEB_APP_3)
+ webApp3Update.add([new dtos.WebAppSettingCreation("n3a", "v3a")])
+
+ var webApp4Update = update.getWebAppSettings(WEB_APP_4)
+ webApp4Update.add([new dtos.WebAppSettingCreation("n4a", "v4a")])
+
+ return facade.updatePersons([update]).then(function () {
+ var update = new dtos.PersonUpdate()
+ update.setUserId(permId)
+
+ var webApp1Update = update.getWebAppSettings(WEB_APP_1)
+ webApp1Update.add([new dtos.WebAppSettingCreation("n1c", "v1c")])
+ webApp1Update.remove(["n1b"])
+
+ var webApp2Update = update.getWebAppSettings(WEB_APP_2)
+ webApp2Update.set([new dtos.WebAppSettingCreation("n2a", "v2a updated"), new dtos.WebAppSettingCreation("n2c", "v2c")])
+
+ var webApp3Update = update.getWebAppSettings(WEB_APP_3)
+ webApp3Update.set([])
+
+ var webApp4Update = update.getWebAppSettings(WEB_APP_4)
+ webApp4Update.remove(["n4a"])
+
+ return facade.updatePersons([update])
+ })
+ }
+
+ var fCheck = function (person: openbis.Person) {
+ c.assertEqual(person.getUserId(), userId, "User id")
+ c.assertEqual(Object.keys(person.getWebAppSettings()).length, 2, "Web apps")
+
+ var webApp1 = person.getWebAppSettings(WEB_APP_1).getSettings()
+ c.assertEqual(Object.keys(webApp1).length, 2)
+ c.assertEqual(webApp1["n1a"].getValue(), "v1a")
+ c.assertEqual(webApp1["n1c"].getValue(), "v1c")
+
+ var webApp2 = person.getWebAppSettings(WEB_APP_2).getSettings()
+ c.assertEqual(Object.keys(webApp2).length, 2)
+ c.assertEqual(webApp2["n2a"].getValue(), "v2a updated")
+ c.assertEqual(webApp2["n2c"].getValue(), "v2c")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPerson, fCheck)
+ })
+
+ QUnit.test("updateOperationExecutions()", function (assert) {
+ var c = new common(assert, dtos)
+ var permId = null
+
+ var fCreate = function (facade: openbis.openbis) {
+ return c.createOperationExecution(facade).then(function (id) {
+ permId = id
+ return [id]
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var executionUpdate = new dtos.OperationExecutionUpdate()
+ executionUpdate.setExecutionId(permId)
+ executionUpdate.setDescription("Description " + permId.getPermId())
+ return facade.updateOperationExecutions([executionUpdate])
+ }
+
+ var fCheck = function (execution: openbis.OperationExecution) {
+ c.assertEqual(execution.getPermId().getPermId(), permId.getPermId(), "PermId")
+ c.assertEqual(execution.getDescription(), "Description " + permId.getPermId(), "Execution description")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findOperationExecution, fCheck)
+ })
+
+ QUnit.test("updateSemanticAnnotations()", function (assert) {
+ var c = new common(assert, dtos)
+
+ var fCreate = function (facade: openbis.openbis) {
+ return c.createSemanticAnnotation(facade).then(function (permId) {
+ return [permId]
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ var update = new dtos.SemanticAnnotationUpdate()
+ update.setSemanticAnnotationId(permId)
+ update.setPredicateOntologyId("updatedPredicateOntologyId")
+ update.setPredicateOntologyVersion("updatedPredicateOntologyVersion")
+ update.setPredicateAccessionId("updatedPredicateAccessionId")
+ update.setDescriptorOntologyId("updatedDescriptorOntologyId")
+ update.setDescriptorOntologyVersion("updatedDescriptorOntologyVersion")
+ update.setDescriptorAccessionId("updatedDescriptorAccessionId")
+ return facade.updateSemanticAnnotations([update])
+ }
+
+ var fCheck = function (annotation: openbis.SemanticAnnotation) {
+ c.assertEqual(annotation.getPredicateOntologyId(), "updatedPredicateOntologyId", "Predicate Ontology Id")
+ c.assertEqual(annotation.getPredicateOntologyVersion(), "updatedPredicateOntologyVersion", "Predicate Ontology Version")
+ c.assertEqual(annotation.getPredicateAccessionId(), "updatedPredicateAccessionId", "Predicate Accession Id")
+ c.assertEqual(annotation.getDescriptorOntologyId(), "updatedDescriptorOntologyId", "Descriptor Ontology Id")
+ c.assertEqual(annotation.getDescriptorOntologyVersion(), "updatedDescriptorOntologyVersion", "Descriptor Ontology Version")
+ c.assertEqual(annotation.getDescriptorAccessionId(), "updatedDescriptorAccessionId", "Descriptor Accession Id")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findSemanticAnnotation, fCheck)
+ })
+
+ QUnit.test("updateQueries()", function (assert) {
+ var c = new common(assert, dtos)
+
+ var update = new dtos.QueryUpdate()
+ update.setName(c.generateId("query"))
+ update.setDescription("updated description")
+ update.setDatabaseId(new dtos.QueryDatabaseName("openbisDB2"))
+ update.setQueryType(dtos.QueryType.SAMPLE)
+ update.setEntityTypeCodePattern("sample type pattern")
+ update.setSql("select * from samples where perm_id = ${key};")
+ update.setPublic(true)
+
+ var fCreate = function (facade: openbis.openbis) {
+ return c.createQuery(facade).then(function (techId) {
+ return [techId]
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, techId) {
+ update.setQueryId(techId)
+ return facade.updateQueries([update])
+ }
+
+ var fCheck = function (query: openbis.Query) {
+ c.assertEqual(query.getName(), update.getName().getValue(), "Name")
+ c.assertEqual(query.getDescription(), update.getDescription().getValue(), "Description")
+ c.assertEqual(
+ (<openbis.QueryDatabaseName>query.getDatabaseId()).getName(),
+ (<openbis.QueryDatabaseName>update.getDatabaseId().getValue()).getName(),
+ "Database"
+ )
+ c.assertEqual(query.getQueryType(), update.getQueryType().getValue(), "Query type")
+ c.assertEqual(query.getEntityTypeCodePattern(), update.getEntityTypeCodePattern().getValue(), "Entity type code pattern")
+ c.assertEqual(query.getSql(), update.getSql().getValue(), "Sql")
+ c.assertEqual(query.isPublic(), update.isPublic().getValue(), "Is public")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findQuery, fCheck)
+ })
+
+ QUnit.test("updatePersonalAccessTokens()", function (assert) {
+ var c = new common(assert, dtos)
+
+ var update = new dtos.PersonalAccessTokenUpdate()
+ update.setAccessDate(new Date().getTime())
+
+ var fCreate = function (facade: openbis.openbis) {
+ return c.createPersonalAccessToken(facade).then(function (permId) {
+ return [permId]
+ })
+ }
+
+ var fUpdate = function (facade: openbis.openbis, permId) {
+ update.setPersonalAccessTokenId(permId)
+ return facade.updatePersonalAccessTokens([update])
+ }
+
+ var fCheck = function (pat: openbis.PersonalAccessToken) {
+ c.assertEqual(pat.getAccessDate(), update.getAccessDate().getValue(), "Access date")
+ }
+
+ testUpdate(c, fCreate, fUpdate, c.findPersonalAccessToken, fCheck)
+ })
+ }
+
+ resolve(function () {
+ executeModule("Update tests (RequireJS)", new openbis(), dtos)
+ executeModule("Update tests (RequireJS - executeOperations)", new openbisExecuteOperations(new openbis(), dtos), dtos)
+ executeModule("Update tests (module VAR)", new window.openbis.openbis(), window.openbis)
+ executeModule(
+ "Update tests (module VAR - executeOperations)",
+ new openbisExecuteOperations(new window.openbis.openbis(), window.openbis),
+ window.openbis
+ )
+ executeModule("Update tests (module ESM)", new window.openbisESM.openbis(), window.openbisESM)
+ executeModule(
+ "Update tests (module ESM - executeOperations)",
+ new openbisExecuteOperations(new window.openbisESM.openbis(), window.openbisESM),
+ window.openbisESM
+ )
+ })
+ })
+})