From 7c7370e8bbe8c8924d63ab8af2ce85680f65990a Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Thu, 19 Nov 2009 16:20:28 +0000
Subject: [PATCH] improve error message
SVN: 13458
---
.../ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java | 12 +++++++++++-
1 file changed, 11 insertions(+), 1 deletion(-)
diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java
index 728b2ff92b2..67a3e47cd40 100644
--- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java
+++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java
@@ -29,6 +29,7 @@ import java.util.Properties;
import java.util.Set;
import java.util.Map.Entry;
+import org.apache.commons.lang.StringUtils;
import org.apache.log4j.Logger;
import ch.systemsx.cisd.common.Constants;
@@ -201,11 +202,20 @@ class FlowLaneFeeder implements IPostRegistrationDatasetHandler
return Collections.emptyList();
}
List<String> command = Arrays.asList(srfInfoPathOrNull, "-l1", file.getAbsolutePath());
- ProcessResult result = ProcessExecutionHelper.run(command, operationLog, operationLog, ConcurrencyUtilities.NO_TIMEOUT, ProcessExecutionHelper.OutputReadingStrategy.ALWAYS, true);
+ ProcessResult result =
+ ProcessExecutionHelper.run(command, operationLog, operationLog,
+ ConcurrencyUtilities.NO_TIMEOUT,
+ ProcessExecutionHelper.OutputReadingStrategy.ALWAYS, true);
List<String> output = result.getOutput();
if (result.isOK() == false)
{
StringBuilder builder = new StringBuilder();
+ String startupFailureMessage = result.getStartupFailureMessage();
+ if (StringUtils.isNotBlank(startupFailureMessage))
+ {
+ builder.append("\nStartup failure message:").append(startupFailureMessage);
+ }
+ builder.append("\nStandard out and error:");
for (String outputLine : output)
{
builder.append("\n").append(outputLine);
--
GitLab