diff --git a/sanofi/dist/etc/sanofi-dropbox/dropbox-all-in-one-with-library.py b/sanofi/dist/etc/sanofi-dropbox/dropbox-all-in-one-with-library.py index 9dcb36b434ea3b3ba35363440bd2efe2e0f9c7ae..4b9aab02aa5bde854a5cf7082221293071280988 100644 --- a/sanofi/dist/etc/sanofi-dropbox/dropbox-all-in-one-with-library.py +++ b/sanofi/dist/etc/sanofi-dropbox/dropbox-all-in-one-with-library.py @@ -465,6 +465,8 @@ class MyImageDataSetConfig(SimpleImageDataConfig): self.setStoreChannelsOnExperimentLevel(STORE_CHANNELS_ON_EXPERIMENT_LEVEL) self.setOriginalDataStorageFormat(ORIGINAL_DATA_STORAGE_FORMAT) if GENERATE_THUMBNAILS: + self.setGenerateThumbnails(True) + self.setUseImageMagicToGenerateThumbnails(True) self.setAllowedMachineLoadDuringThumbnailsGeneration(ALLOWED_MACHINE_LOAD_DURING_THUMBNAIL_GENERATION) self.setMaxThumbnailWidthAndHeight(MAX_THUMNAIL_WIDTH_AND_HEIGHT) @@ -548,10 +550,10 @@ if incoming.isDirectory(): overlaysDir = findDir(incoming, OVERLAYS_DIR_PATTERN) if overlaysDir is not None: convertToPng(overlaysDir.getPath(), OVERLAYS_TRANSPARENT_COLOR) - overlayDatasetConfig = MyImageDataSetConfig(incoming, overlaysDir) + overlayDatasetConfig = MyImageDataSetConfig(overlaysDir, overlaysDir) overlayDatasetConfig.setSegmentationImageDatasetType() overlayDatasetConfig.setFileFormatType(OVERLAY_IMAGE_FILE_FORMAT) - overlayDatasetDetails = factory.createImageRegistrationDetails(overlayDatasetConfig, incoming) + overlayDatasetDetails = factory.createImageRegistrationDetails(overlayDatasetConfig, overlaysDir) overlayDataset = transaction.createNewDataSet(overlayDatasetDetails) overlayDataset.setSample(imageDataSet.getSample()) overlayDataset.setParentDatasets([ imageDataSet.getDataSetCode() ])