diff --git a/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/120420_SN792_0109_BC0P8LACXX/RunInfo.xml b/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/120420_SN792_0109_BC0P8LACXX/RunInfo.xml new file mode 100755 index 0000000000000000000000000000000000000000..4b0531014e9394f1baf8ac37398ee4c45a11912e --- /dev/null +++ b/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/120420_SN792_0109_BC0P8LACXX/RunInfo.xml @@ -0,0 +1,16 @@ +<?xml version="1.0"?> +<RunInfo xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" Version="2"> + <Run Id="120420_SN792_0109_BC0P8LACXX" Number="109"> + <Flowcell>C0P8LACXX</Flowcell> + <Instrument>SN792</Instrument> + <Date>120420</Date> + <Reads> + <Read Number="1" NumCycles="50" IsIndexedRead="N" /> + <Read Number="2" NumCycles="7" IsIndexedRead="Y" /> + </Reads> + <FlowcellLayout LaneCount="8" SurfaceCount="2" SwathCount="3" TileCount="16" /> + <AlignToPhiX> + <Lane>5</Lane> + </AlignToPhiX> + </Run> +</RunInfo> \ No newline at end of file diff --git a/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/120420_SN792_0109_BC0P8LACXX/runParameters.xml b/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/120420_SN792_0109_BC0P8LACXX/runParameters.xml new file mode 100755 index 0000000000000000000000000000000000000000..051e6fd4d1d29711a2f5657486e92ef6ca0d312e --- /dev/null +++ b/openbis_standard_technologies/dist/tarball/installer/data/examples/illumina-ngs/120420_SN792_0109_BC0P8LACXX/runParameters.xml @@ -0,0 +1,116 @@ +<?xml version="1.0"?> +<RunParameters xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"> + <Setup> + <ExperimentName>120420_C0P8LACXX</ExperimentName> + <ScanID>-999</ScanID> + <FCPosition>B</FCPosition> + <WorkFlowType>SINGLEINDEX</WorkFlowType> + <PairEndFC>false</PairEndFC> + <Read1>50</Read1> + <IndexRead1>7</IndexRead1> + <IndexRead2>0</IndexRead2> + <Read2>0</Read2> + <OutputFolder>Y:\</OutputFolder> + <PeriodicSave>Save All Thumbnails</PeriodicSave> + <Flowcell>HiSeq Flow Cell v3</Flowcell> + <FirstBaseConfirmation>true</FirstBaseConfirmation> + <ControlLane>5</ControlLane> + <KeepIntensityFiles>true</KeepIntensityFiles> + <Sbs>TruSeq SBS Kit v3</Sbs> + <Pe /> + <Index>TruSeq Multiplex Sequencing Primer Box</Index> + <AlignToPhiX> + <Lane>5</Lane> + </AlignToPhiX> + <ApplicationName>HiSeq Control Software</ApplicationName> + <ApplicationVersion>1.5.15.1</ApplicationVersion> + <RunID>120420_SN792_0109_BC0P8LACXX</RunID> + <RunStartDate>120420</RunStartDate> + <ScannerID>SN792</ScannerID> + <ScanNumber>109</ScanNumber> + <ComputerName>BS-DSFCONTROL03</ComputerName> + <FPGAVersion>3.0.35.1</FPGAVersion> + <CPLDVersion>3.0.14</CPLDVersion> + <RTAVersion>1.13.48</RTAVersion> + <ChemistryVersion>Illumina,Bruno Fluidics Controller,0,v2.0340</ChemistryVersion> + <CameraFirmware>2.00-d10</CameraFirmware> + <CameraDriver>5.50.0.3135</CameraDriver> + <FocusCameraFirmware /> + <Barcode>C0P8LACXX</Barcode> + <Username>sbsuser</Username> + <SelectedSections> + <Section Name="A_1" /> + <Section Name="B_1" /> + <Section Name="C_1" /> + <Section Name="D_1" /> + <Section Name="E_1" /> + <Section Name="F_1" /> + <Section Name="G_1" /> + <Section Name="H_1" /> + </SelectedSections> + <FocusMethod>DynamicITF</FocusMethod> + <SelectedSurface>BothLaneSurfaces</SelectedSurface> + <SwathScanMode>AutoSwath</SwathScanMode> + <EnableLft>true</EnableLft> + <AutoTiltOnce>true</AutoTiltOnce> + <EnableAutoCenter>true</EnableAutoCenter> + <EnableAnalysis>true</EnableAnalysis> + <EnableBasecalling>true</EnableBasecalling> + <EnableCameraLogging>false</EnableCameraLogging> + <AdapterPlate>HiSeq Adapter Plate</AdapterPlate> + <SlideHolder>HiSeq Flow Cell Holder</SlideHolder> + <TemplateCycleCount>4</TemplateCycleCount> + <NumAnalysisThreads>8</NumAnalysisThreads> + <FPGADynamicFocusSettings> + <MaxInitialZJumpHalfUm>3</MaxInitialZJumpHalfUm> + <MaxSubsequentZJumpHalfUm>7</MaxSubsequentZJumpHalfUm> + <NumberOfInitialZJumps>0</NumberOfInitialZJumps> + <CVGainStart>500</CVGainStart> + <CVGainPosLocked>500</CVGainPosLocked> + <Offset>250</Offset> + <HotPixel>350</HotPixel> + <MotorDelayFrames>25</MotorDelayFrames> + <DitherSize>100</DitherSize> + <IntensityCeiling>65535</IntensityCeiling> + <IGain>100</IGain> + <IHistory>4</IHistory> + </FPGADynamicFocusSettings> + <TileWidth>2048</TileWidth> + <TileHeight>10000</TileHeight> + <ImageWidth>2048</ImageWidth> + <ImageHeight>160000</ImageHeight> + <LaneLength>60</LaneLength> + <NumTilesPerSwath>16</NumTilesPerSwath> + <NumSwaths>3</NumSwaths> + <UseExistingRecipe>false</UseExistingRecipe> + <Reads> + <Read Number="1" NumCycles="50" IsIndexedRead="N" /> + <Read Number="2" NumCycles="7" IsIndexedRead="Y" /> + </Reads> + <EnableNotifications>false</EnableNotifications> + <ReagentKits> + <Sbs> + <SbsReagentKit> + <ID>REA-0122918 REA-0113370</ID> + <Prime>false</Prime> + <NumberCyclesRemaining>59</NumberCyclesRemaining> + <IsNew50Cycle>true</IsNew50Cycle> + <IsNew200Cycle>false</IsNew200Cycle> + </SbsReagentKit> + </Sbs> + <Index> + <ReagentKit> + <ID>REA-0123179</ID> + </ReagentKit> + </Index> + <Pe /> + </ReagentKits> + <Resume>false</Resume> + <ResumeCycle>0</ResumeCycle> + <SupportMultipleSurfacesInUI>true</SupportMultipleSurfacesInUI> + <TempFolder>E:\Illumina\HiSeqTemp\120420_SN792_0109_BC0P8LACXX</TempFolder> + <PromptForPeReagents>true</PromptForPeReagents> + <MockRun>false</MockRun> + </Setup> + <Version>1</Version> +</RunParameters> \ No newline at end of file