diff --git a/installation/resource/installer/bin/backup-databases.sh b/installation/resource/installer/bin/backup-databases.sh
index b02381f22975f44ab3620b5cef19ed32913e3757..acb1231d3dec7d8bfdb3c00f9ac812a58b9dc713 100755
--- a/installation/resource/installer/bin/backup-databases.sh
+++ b/installation/resource/installer/bin/backup-databases.sh
@@ -34,6 +34,19 @@ function getProperty() {
echo $properties | tr ";" "\n" | grep "$propName=" | sed "s/$propName=//"
}
+function checkForBackup()
+{
+ local database=$1
+ if [ $CONSOLE ]; then
+ if [ "$(trim "$DATABASES_TO_BACKUP")" == "" ]; then
+ echo "TRUE"
+ return
+ fi
+ fi
+ echo $(contains "$DATABASES_TO_BACKUP" $database)
+ return
+}
+
#
# Backs up database specified by a string as returned
# in the function listDatabases.
@@ -42,8 +55,8 @@ function backupDatabase() {
DB_PROPS=$1
- database=$(getProperty $DB_PROPS "database")
- if [ $(isEmptyOrContains "$DATABASES_TO_BACKUP" $database) == "FALSE" ]; then
+ local database=$(getProperty $DB_PROPS "database")
+ if [ $(checkForBackup $database) == "FALSE" ]; then
return
fi
if [ $(databaseExist $database) == "TRUE" ]; then
@@ -73,6 +86,7 @@ if [ "$BACKUP_DIR" == "" ]; then
exit 1
fi
DATABASES_TO_BACKUP="$2"
+CONSOLE=$3
SERVERS=$BASE/../servers
AS_SERVER=$SERVERS/openBIS-server/
diff --git a/installation/resource/installer/bin/backup-installation.sh b/installation/resource/installer/bin/backup-installation.sh
index 4ed307f35d750bb7d69cba94c3c51bb07a7f3526..5aa5f9f1c7a7d29b6c340c5774b0fbff90904ee2 100755
--- a/installation/resource/installer/bin/backup-installation.sh
+++ b/installation/resource/installer/bin/backup-installation.sh
@@ -22,6 +22,7 @@ if [ "$BACKUP_DIR" == "" ]; then
exit 1
fi
DATABASES_TO_BACKUP="$2"
+CONSOLE=$3
$BASE/alldown.sh
@@ -32,7 +33,7 @@ echo "Creating backup folder $BACKUP_DIR ..."
mkdir -p $CONFIG
$BASE/backup-config.sh $CONFIG
-$BASE/backup-databases.sh $BACKUP_DIR "$DATABASES_TO_BACKUP"
+$BASE/backup-databases.sh $BACKUP_DIR "$DATABASES_TO_BACKUP" $CONSOLE
if [ $? -ne "0" ]; then
echo "Creating database backups had failed. Aborting ..."
exit 1
diff --git a/installation/resource/installer/bin/common-functions.sh b/installation/resource/installer/bin/common-functions.sh
index a5f952a7bc1b35b148270b1a5eba5c33bcdae060..756336c3cee12c6753a930b348baef64e8115bc4 100644
--- a/installation/resource/installer/bin/common-functions.sh
+++ b/installation/resource/installer/bin/common-functions.sh
@@ -14,19 +14,15 @@ trim()
#
# Checks whether the first argument, a comma-separated list of items contains the second argument
-# as an item. Returns TRUE if this is the case or the list is empty. Trailing and leading
+# as an item. Returns TRUE if this is the case. Trailing and leading
# whitespace of list items are ignored.
#
# This function should be used as follows:
#
-# result=$(isEmptyOrContains " abc, def , ghi " "abc")
+# result=$(contains " abc, def , ghi " "abc")
#
-isEmptyOrContains()
+contains()
{
- if [ "$(trim "$1")" == "" ]; then
- echo "TRUE"
- return
- fi
local list="$1"
local item="$2"
while true; do
diff --git a/installation/resource/tarball/console.properties b/installation/resource/tarball/console.properties
index bd5cf280de607bfcddfe89e2477691a69ff45bd7..053f74ebc8bee5a62912932157cba02f87914e2c 100644
--- a/installation/resource/tarball/console.properties
+++ b/installation/resource/tarball/console.properties
@@ -42,4 +42,14 @@ KEY_PASSWORD = changeit
#SCREENING = true
# Standard technology ILLUMINA-NGS (ETH BSSE Setup) is disabled by default
-#ILLUMINA-NGS = true
\ No newline at end of file
+#ILLUMINA-NGS = true
+
+# Fast data set file browsing improves the performance of browsing of data sets with a large number of files.
+# We recommend leaving it on for all instances, and especially screening instances.
+# Default value is true.
+#PATHINFO_DB_ENABLED = true
+
+#
+# Comma-separated list of databases to backup. If the list is empty or undefined all databases
+# will be backauped.
+#DATABASES_TO_BACKUP =
\ No newline at end of file
diff --git a/installation/resource/tarball/run-console.sh b/installation/resource/tarball/run-console.sh
index de53b5299bb0adaffd215b56f060bdec1e7ed9cc..13665502284c46d77989d8052c13c39afea0db91 100755
--- a/installation/resource/tarball/run-console.sh
+++ b/installation/resource/tarball/run-console.sh
@@ -43,8 +43,6 @@ if [ ${BASE#/} == ${BASE} ]; then
fi
ensureToolOnPath "java"
-ensureToolOnPath "psql"
-ensureToolOnPath "pg_dump"
install_path=$( grep -e "^INSTALL_PATH=.*$" $BASE/console.properties | sed "s/INSTALL_PATH=//" )
if [ -z "$install_path" ]; then
@@ -65,4 +63,4 @@ else
readAdminPassword
fi
-java -Djava.util.logging.config.file=$BASE/jul.config -DADMIN_PASSWORD=$ADMIN_PASSWORD -Dmerge.props.to.installation.vars=true -jar $BASE/openBIS-installer.jar -options-auto $BASE/console.properties
+java -Djava.util.logging.config.file=$BASE/jul.config -DADMIN_PASSWORD=$ADMIN_PASSWORD -DCONSOLE=true -Dmerge.props.to.installation.vars=true -jar $BASE/openBIS-installer.jar -options-auto $BASE/console.properties
diff --git a/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteBackupAction.java b/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteBackupAction.java
index 31f90f58a56a10f5123cd25c4850bb30d9c1d583..4ae5ce6dde01f15e026e97b7ea3055283e79f4a5 100644
--- a/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteBackupAction.java
+++ b/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteBackupAction.java
@@ -39,13 +39,25 @@ public class ExecuteBackupAction extends AbstractScriptExecutor implements Panel
String script = getAdminScript(data, CREATE_BACKUP_SCRIPT);
String backupFolder = data.getVariable(GlobalInstallationContext.BACKUP_FOLDER_VARNAME);
String dataBasesToBackup = data.getVariable(SetDatabasesToBackupAction.DATABASES_TO_BACKUP_VARNAME);
- System.out.println("dbs:"+dataBasesToBackup+"<");
+ String console = data.getVariable("SYSTEM_CONSOLE");
if (dataBasesToBackup == null)
{
- executeAdminScript(null, script, backupFolder);
+ if (console == null)
+ {
+ executeAdminScript(null, script, backupFolder);
+ } else
+ {
+ executeAdminScript(null, script, backupFolder, "", console);
+ }
} else
{
- executeAdminScript(null, script, backupFolder, dataBasesToBackup);
+ if (console == null)
+ {
+ executeAdminScript(null, script, backupFolder, dataBasesToBackup);
+ } else
+ {
+ executeAdminScript(null, script, backupFolder, dataBasesToBackup, console);
+ }
}
}
diff --git a/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteSetupScriptsAction.java b/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteSetupScriptsAction.java
index 3eea038137e2c2d62cae0136c4e3c1259d80a707..cf7c25e338a2f71112f28df6d3babc80b73afcfa 100644
--- a/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteSetupScriptsAction.java
+++ b/installation/source/java/ch/systemsx/cisd/openbis/installer/izpack/ExecuteSetupScriptsAction.java
@@ -48,6 +48,11 @@ public class ExecuteSetupScriptsAction extends AbstractScriptExecutor implements
static final String PATHINFO_DB_FEEDING_TASK = "pathinfo-feeding";
static final String MAINTENANCE_PLUGINS_KEY = "maintenance-plugins";
static final String PATHINFO_DB_DELETION_TASK = "path-info-deletion";
+ static final String PROCESSING_PLUGINS_KEY = "processing-plugins";
+ static final String PATHINFO_DB_CHECK = "path-info-db-consistency-check";
+
+ private final String[] KEYS = {DATA_SOURCES_KEY, POST_REGISTRATION_TASKS_KEY, MAINTENANCE_PLUGINS_KEY, PROCESSING_PLUGINS_KEY};
+ private final String[] TERMS = {PATHINFO_DB_DATA_SOURCE, PATHINFO_DB_FEEDING_TASK, PATHINFO_DB_DELETION_TASK, PATHINFO_DB_CHECK};
/**
* executed for first time installations.
@@ -78,9 +83,9 @@ public class ExecuteSetupScriptsAction extends AbstractScriptExecutor implements
File installDir = GlobalInstallationContext.installDir;
try
{
- enablePathinfoDB(
- "true".equals(data.getVariable(GlobalInstallationContext.PATHINFO_DB_ENABLED)),
- installDir);
+ String pathinfoDBEnabled =
+ data.getVariable(GlobalInstallationContext.PATHINFO_DB_ENABLED);
+ enablePathinfoDB("false".equalsIgnoreCase(pathinfoDBEnabled) == false, installDir);
installKeyStore(keyStoreFileName, installDir);
injectPasswords(keyStorePassword, certificatePassword, installDir);
} catch (Exception ex)
@@ -116,20 +121,16 @@ public class ExecuteSetupScriptsAction extends AbstractScriptExecutor implements
new File(installDir, Utils.DSS_PATH + Utils.SERVICE_PROPERTIES_PATH);
if (enableFlag)
{
- Utils.addTermToPropertyList(dssServicePropertiesFile, DATA_SOURCES_KEY,
- PATHINFO_DB_DATA_SOURCE);
- Utils.addTermToPropertyList(dssServicePropertiesFile, POST_REGISTRATION_TASKS_KEY,
- PATHINFO_DB_FEEDING_TASK);
- Utils.addTermToPropertyList(dssServicePropertiesFile, MAINTENANCE_PLUGINS_KEY,
- PATHINFO_DB_DELETION_TASK);
+ for (int i = 0; i < KEYS.length; i++)
+ {
+ Utils.addTermToPropertyList(dssServicePropertiesFile, KEYS[i], TERMS[i]);
+ }
} else
{
- Utils.removeTermFromPropertyList(dssServicePropertiesFile, DATA_SOURCES_KEY,
- PATHINFO_DB_DATA_SOURCE);
- Utils.removeTermFromPropertyList(dssServicePropertiesFile, POST_REGISTRATION_TASKS_KEY,
- PATHINFO_DB_FEEDING_TASK);
- Utils.removeTermFromPropertyList(dssServicePropertiesFile, MAINTENANCE_PLUGINS_KEY,
- PATHINFO_DB_DELETION_TASK);
+ for (int i = 0; i < KEYS.length; i++)
+ {
+ Utils.removeTermFromPropertyList(dssServicePropertiesFile, KEYS[i], TERMS[i]);
+ }
}
}