diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DeletionDAO.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DeletionDAO.java
index 75a166640abfbc220a9d2132cae35f62db23caf7..9fde8bca53f38472a2ead8a2de7760f58801d8e9 100644
--- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DeletionDAO.java
+++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DeletionDAO.java
@@ -44,6 +44,7 @@ import ch.systemsx.cisd.openbis.generic.server.dataaccess.PersistencyResources;
import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.search.IFullTextIndexUpdateScheduler;
import ch.systemsx.cisd.openbis.generic.server.dataaccess.db.search.IndexUpdateOperation;
import ch.systemsx.cisd.openbis.generic.shared.basic.TechId;
+import ch.systemsx.cisd.openbis.generic.shared.dto.DataSetRelationshipPE;
import ch.systemsx.cisd.openbis.generic.shared.dto.DatabaseInstancePE;
import ch.systemsx.cisd.openbis.generic.shared.dto.DeletionPE;
import ch.systemsx.cisd.openbis.generic.shared.dto.IDeletablePE;
@@ -318,7 +319,7 @@ final class DeletionDAO extends AbstractGenericEntityDAO<DeletionPE> implements
return updatedRows;
}
- public int trashSampleRelationships(final List<TechId> samplesIds, final DeletionPE deletion)
+ private int trashSampleRelationships(final List<TechId> samplesIds, final DeletionPE deletion)
throws DataAccessException
{
if (samplesIds.isEmpty())
@@ -356,7 +357,7 @@ final class DeletionDAO extends AbstractGenericEntityDAO<DeletionPE> implements
return updatedRows;
}
- public int trashDataSetRelationships(final List<TechId> dataSetIds, final DeletionPE deletion)
+ private int trashDataSetRelationships(final List<TechId> dataSetIds, final DeletionPE deletion)
throws DataAccessException
{
if (dataSetIds.isEmpty())
@@ -376,7 +377,7 @@ final class DeletionDAO extends AbstractGenericEntityDAO<DeletionPE> implements
return session
.createQuery(
"UPDATE "
- + SampleRelationshipPE.class.getSimpleName()
+ + DataSetRelationshipPE.class.getSimpleName()
+ " SET deletion = :deletion"
+ " WHERE deletion IS NULL"
+ " AND (parentDataSet.id IN (:ids) OR childDataSet.id in (:ids))")
diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipId.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipId.java
new file mode 100644
index 0000000000000000000000000000000000000000..45dd017b50cdd34d577b787d808bcfd5a0a13e70
--- /dev/null
+++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipId.java
@@ -0,0 +1,94 @@
+/*
+ * Copyright 2012 ETH Zuerich, CISD
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+
+package ch.systemsx.cisd.openbis.generic.shared.dto;
+
+import java.io.Serializable;
+
+import javax.persistence.FetchType;
+import javax.persistence.JoinColumn;
+import javax.persistence.ManyToOne;
+
+import org.apache.commons.lang.builder.EqualsBuilder;
+import org.apache.commons.lang.builder.HashCodeBuilder;
+import org.hibernate.validator.NotNull;
+
+/**
+ * @author Pawel Glyzewski
+ */
+public class DataSetRelationshipId implements Serializable
+{
+ private static final long serialVersionUID = -3819640534421748352L;
+
+ private DataPE parentDataSet;
+
+ @NotNull(message = ValidationMessages.PARENT_NOT_NULL_MESSAGE)
+ @ManyToOne(fetch = FetchType.EAGER)
+ @JoinColumn(name = ColumnNames.DATA_PARENT_COLUMN)
+ public DataPE getParentDataSet()
+ {
+ return parentDataSet;
+ }
+
+ public void setParentDataSet(DataPE parentDataSet)
+ {
+ this.parentDataSet = parentDataSet;
+ }
+
+ @NotNull(message = ValidationMessages.CHILD_NOT_NULL_MESSAGE)
+ @ManyToOne(fetch = FetchType.EAGER)
+ @JoinColumn(name = ColumnNames.DATA_CHILD_COLUMN)
+ public DataPE getChildDataSet()
+ {
+ return childDataSet;
+ }
+
+ public void setChildDataSet(DataPE childDataSet)
+ {
+ this.childDataSet = childDataSet;
+ }
+
+ private DataPE childDataSet;
+
+ @Deprecated
+ public DataSetRelationshipId()
+ {
+ }
+
+ public DataSetRelationshipId(DataPE parentDataSet, DataPE childDataSet)
+ {
+ this.parentDataSet = parentDataSet;
+ this.childDataSet = childDataSet;
+ }
+
+ @Override
+ public boolean equals(Object other)
+ {
+ if (other == null || !(other instanceof DataSetRelationshipId))
+ return false;
+ DataSetRelationshipId castOther = (DataSetRelationshipId) other;
+ return new EqualsBuilder()
+ .append(this.parentDataSet.getId(), castOther.parentDataSet.getId())
+ .append(this.childDataSet.getId(), castOther.childDataSet.getId()).isEquals();
+ }
+
+ @Override
+ public int hashCode()
+ {
+ return new HashCodeBuilder().append(parentDataSet.getId()).append(childDataSet.getId())
+ .toHashCode();
+ }
+}
diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipPE.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipPE.java
index 76f1d092d13a03005a2460a6a347b20471fe53d1..525596d81d77acfe4ad687b05201676cbf171cda 100644
--- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipPE.java
+++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/dto/DataSetRelationshipPE.java
@@ -21,6 +21,7 @@ import java.io.Serializable;
import javax.persistence.Entity;
import javax.persistence.FetchType;
import javax.persistence.Id;
+import javax.persistence.IdClass;
import javax.persistence.JoinColumn;
import javax.persistence.ManyToOne;
import javax.persistence.Table;
@@ -38,6 +39,7 @@ import ch.systemsx.cisd.openbis.generic.shared.IServer;
@Entity
@Table(name = TableNames.DATA_SET_RELATIONSHIPS_VIEW, uniqueConstraints = @UniqueConstraint(columnNames =
{ ColumnNames.DATA_PARENT_COLUMN, ColumnNames.DATA_CHILD_COLUMN }))
+@IdClass(DataSetRelationshipId.class)
public class DataSetRelationshipPE implements Serializable
{
private static final long serialVersionUID = IServer.VERSION;
diff --git a/openbis/source/sql/postgresql/098/function-098.sql b/openbis/source/sql/postgresql/098/function-098.sql
index a35703e4408b3f5341634e27b29483441f7406b1..5ac3d760c1fc69e3b9a818313185c0368a66b893 100644
--- a/openbis/source/sql/postgresql/098/function-098.sql
+++ b/openbis/source/sql/postgresql/098/function-098.sql
@@ -395,7 +395,7 @@ BEGIN
END IF;
-- all children need to be deleted
SELECT count(*) INTO counter
- FROM sample_relationships sr, samples sc
+ FROM sample_relationships_all sr, samples sc
WHERE sample_id_parent = NEW.id AND sc.id = sr.sample_id_child AND sc.del_id IS NULL;
IF (counter > 0) THEN
RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its child samples was not deleted.', NEW.code;
@@ -409,6 +409,65 @@ CREATE CONSTRAINT TRIGGER check_deletion_consistency_on_sample_deletion
DEFERRABLE INITIALLY DEFERRED
FOR EACH ROW
EXECUTE PROCEDURE check_deletion_consistency_on_sample_deletion();
+
+-----------------------------------------
+-- update sample relationships on revert
+-----------------------------------------
+
+CREATE OR REPLACE FUNCTION preserve_deletion_consistency_on_sample_relationships() RETURNS trigger AS $$
+DECLARE
+ delid TECH_ID;
+BEGIN
+ IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+ SELECT del_id INTO delid
+ FROM SAMPLES_ALL where id = NEW.sample_id_parent;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ SELECT del_id INTO delid
+ FROM SAMPLES_ALL where id = NEW.sample_id_child;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER preserve_deletion_consistency_on_sample_relationships
+ BEFORE UPDATE ON sample_relationships_all
+ FOR EACH ROW
+ EXECUTE PROCEDURE preserve_deletion_consistency_on_sample_relationships();
+
+-----------------------------------------
+-- update dataset relationships on revert
+-----------------------------------------
+CREATE OR REPLACE FUNCTION preserve_deletion_consistency_on_data_set_relationships() RETURNS trigger AS $$
+DECLARE
+ delid TECH_ID;
+BEGIN
+ IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+ SELECT del_id INTO delid
+ FROM DATA_ALL where id = NEW.data_id_parent;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ SELECT del_id INTO delid
+ FROM DATA_ALL where id = NEW.data_id_child;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER preserve_deletion_consistency_on_data_set_relationships
+ BEFORE UPDATE ON data_set_relationships_all
+ FOR EACH ROW
+ EXECUTE PROCEDURE preserve_deletion_consistency_on_data_set_relationships();
----------------------------------------------------------------------------------------------------
-- 3. experiment
diff --git a/openbis/source/sql/postgresql/migration/migration-097-098.sql b/openbis/source/sql/postgresql/migration/migration-097-098.sql
index 9df6281d36325d1dc7a1c6c62ec6250e3d795529..a34fbacc1f4d9da4731726994a3c156b1d84234f 100644
--- a/openbis/source/sql/postgresql/migration/migration-097-098.sql
+++ b/openbis/source/sql/postgresql/migration/migration-097-098.sql
@@ -104,3 +104,90 @@ CREATE OR REPLACE RULE sample_relationships_delete AS
ON DELETE TO sample_relationships DO INSTEAD
DELETE FROM sample_relationships_all
WHERE id = OLD.id;
+
+CREATE OR REPLACE FUNCTION preserve_deletion_consistency_on_data_set_relationships() RETURNS trigger AS $$
+DECLARE
+ delid TECH_ID;
+BEGIN
+ IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+ SELECT del_id INTO delid
+ FROM DATA_ALL where id = NEW.data_id_parent;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ SELECT del_id INTO delid
+ FROM DATA_ALL where id = NEW.data_id_child;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER preserve_deletion_consistency_on_data_set_relationships
+ BEFORE UPDATE ON data_set_relationships_all
+ FOR EACH ROW
+ EXECUTE PROCEDURE preserve_deletion_consistency_on_data_set_relationships();
+
+CREATE OR REPLACE FUNCTION preserve_deletion_consistency_on_sample_relationships() RETURNS trigger AS $$
+DECLARE
+ delid TECH_ID;
+BEGIN
+ IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+ SELECT del_id INTO delid
+ FROM SAMPLES_ALL where id = NEW.sample_id_parent;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ SELECT del_id INTO delid
+ FROM SAMPLES_ALL where id = NEW.sample_id_child;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
+
+CREATE TRIGGER preserve_deletion_consistency_on_sample_relationships
+ BEFORE UPDATE ON sample_relationships_all
+ FOR EACH ROW
+ EXECUTE PROCEDURE preserve_deletion_consistency_on_sample_relationships();
+
+
+CREATE OR REPLACE FUNCTION check_deletion_consistency_on_sample_deletion() RETURNS trigger AS $$
+DECLARE
+ counter INTEGER;
+BEGIN
+ IF (OLD.del_id IS NOT NULL OR NEW.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+
+ -- all directly connected data sets need to be deleted
+ -- check datasets
+ SELECT count(*) INTO counter
+ FROM data
+ WHERE data.samp_id = NEW.id AND data.del_id IS NULL;
+ IF (counter > 0) THEN
+ RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its data sets was not deleted.', NEW.code;
+ END IF;
+ -- all components need to be deleted
+ SELECT count(*) INTO counter
+ FROM samples
+ WHERE samples.samp_id_part_of = NEW.id AND samples.del_id IS NULL;
+ IF (counter > 0) THEN
+ RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its component samples was not deleted.', NEW.code;
+ END IF;
+ -- all children need to be deleted
+ SELECT count(*) INTO counter
+ FROM sample_relationships_all sr, samples sc
+ WHERE sample_id_parent = NEW.id AND sc.id = sr.sample_id_child AND sc.del_id IS NULL;
+ IF (counter > 0) THEN
+ RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its child samples was not deleted.', NEW.code;
+ END IF;
+ RETURN NEW;
+END;
+$$ LANGUAGE 'plpgsql';
\ No newline at end of file
diff --git a/openbis/sourceTest/sql/postgresql/098/019=database_version_logs.tsv b/openbis/sourceTest/sql/postgresql/098/019=database_version_logs.tsv
index 51c49f3742f8548c8d32ad49e23aa8cc52c4cae3..14a8d699f84ec41872a0c57111a8394cf138272c 100644
--- a/openbis/sourceTest/sql/postgresql/098/019=database_version_logs.tsv
+++ b/openbis/sourceTest/sql/postgresql/098/019=database_version_logs.tsv
@@ -71,4 +71,4 @@
095 source/sql/postgresql/migration/migration-094-095.sql SUCCESS 2012-01-16 13:47:32.07 \\x414c544552205441424c452045585445524e414c5f444154412041444420434f4c554d4e2053544f524147455f434f4e4649524d4154494f4e20424f4f4c45414e5f43484152204e4f54204e554c4c2044454641554c54202746273b0a5550444154452045585445524e414c5f44415441205345542053544f524147455f434f4e4649524d4154494f4e203d202754273b0a \N
096 source/sql/postgresql/migration/migration-095-096.sql SUCCESS 2012-01-26 15:27:45.343 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\N
097 source/sql/postgresql/migration/migration-096-097.sql SUCCESS 2012-02-10 13:58:24.493 \\x2d2d204d6967726174696f6e2066726f6d2030393620746f203039370a0a2d2d0a2d2d204164642061206e65772022504f53545f524547495354524154494f4e5f444154415345545f515545554522207461626c65207769746820636f6e7461696e74730a2d2d0a4352454154452053455155454e434520504f53545f524547495354524154494f4e5f444154415345545f51554555455f49445f5345513b0a0a435245415445205441424c4520504f53545f524547495354524154494f4e5f444154415345545f515545554520280a20202020494420544543485f4944204e4f54204e554c4c2c0a2020202044535f494420544543485f4944204e4f54204e554c4c200a293b202020200a202020200a414c544552205441424c4520504f53545f524547495354524154494f4e5f444154415345545f51554555452041444420434f4e53545241494e5420505244515f504b205052494d415259204b4559284944293b0a202020200a414c544552205441424c45204f4e4c5920504f53545f524547495354524154494f4e5f444154415345545f51554555450a2020202041444420434f4e53545241494e5420707264715f64735f666b20464f524549474e204b4559202864735f696429205245464552454e43455320646174615f616c6c286964293b0a0a4752414e542053454c454354204f4e2053455155454e434520504f53545f524547495354524154494f4e5f444154415345545f51554555455f49445f53455120544f2047524f5550204f50454e4249535f524541444f4e4c593b0a4752414e542053454c454354204f4e205441424c4520504f53545f524547495354524154494f4e5f444154415345545f515545554520544f2047524f5550204f50454e4249535f524541444f4e4c593b0a0a \N
-098 source/sql/postgresql/migration/migration-097-098.sql SUCCESS 2012-02-14 11:11:05.774 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\N
+098 source/sql/postgresql/migration/migration-097-098.sql SUCCESS 2012-02-15 16:53:06.27 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\N
diff --git a/openbis/sourceTest/sql/postgresql/098/finish-098.sql b/openbis/sourceTest/sql/postgresql/098/finish-098.sql
index a51d0773e984cfe76776de2bf8e12b7f65c7e766..c965544b3bd708dcd12a2d0c3a3a07d602915345 100644
--- a/openbis/sourceTest/sql/postgresql/098/finish-098.sql
+++ b/openbis/sourceTest/sql/postgresql/098/finish-098.sql
@@ -333,6 +333,8 @@ CREATE TRIGGER data_set_property_with_material_data_type_check BEFORE INSERT OR
CREATE TRIGGER experiment_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON experiment_properties FOR EACH ROW EXECUTE PROCEDURE experiment_property_with_material_data_type_check();
CREATE TRIGGER external_data_storage_format_check BEFORE INSERT OR UPDATE ON external_data FOR EACH ROW EXECUTE PROCEDURE external_data_storage_format_check();
CREATE TRIGGER material_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON material_properties FOR EACH ROW EXECUTE PROCEDURE material_property_with_material_data_type_check();
+CREATE TRIGGER preserve_deletion_consistency_on_data_set_relationships BEFORE UPDATE ON data_set_relationships_all FOR EACH ROW EXECUTE PROCEDURE preserve_deletion_consistency_on_data_set_relationships();
+CREATE TRIGGER preserve_deletion_consistency_on_sample_relationships BEFORE UPDATE ON sample_relationships_all FOR EACH ROW EXECUTE PROCEDURE preserve_deletion_consistency_on_sample_relationships();
CREATE TRIGGER sample_code_uniqueness_check BEFORE INSERT OR UPDATE ON samples_all FOR EACH ROW EXECUTE PROCEDURE sample_code_uniqueness_check();
CREATE TRIGGER sample_property_with_material_data_type_check BEFORE INSERT OR UPDATE ON sample_properties FOR EACH ROW EXECUTE PROCEDURE sample_property_with_material_data_type_check();
CREATE TRIGGER sample_subcode_uniqueness_check BEFORE INSERT OR UPDATE ON samples_all FOR EACH ROW EXECUTE PROCEDURE sample_subcode_uniqueness_check();
diff --git a/openbis/sourceTest/sql/postgresql/098/schema-098.sql b/openbis/sourceTest/sql/postgresql/098/schema-098.sql
index 0eb7c2bc996136225ee0a092816b1c0436f654f1..a65bb650bf050467af9ca08f5e6d82cbbec5455c 100644
--- a/openbis/sourceTest/sql/postgresql/098/schema-098.sql
+++ b/openbis/sourceTest/sql/postgresql/098/schema-098.sql
@@ -148,7 +148,7 @@ BEGIN
END IF;
-- all children need to be deleted
SELECT count(*) INTO counter
- FROM sample_relationships sr, samples sc
+ FROM sample_relationships_all sr, samples sc
WHERE sample_id_parent = NEW.id AND sc.id = sr.sample_id_child AND sc.del_id IS NULL;
IF (counter > 0) THEN
RAISE EXCEPTION 'Sample (Code: %) deletion failed because at least one of its child samples was not deleted.', NEW.code;
@@ -286,6 +286,50 @@ BEGIN
RETURN NEW;
END;
$$;
+CREATE FUNCTION preserve_deletion_consistency_on_data_set_relationships() RETURNS trigger
+ LANGUAGE plpgsql
+ AS $$
+DECLARE
+ delid TECH_ID;
+BEGIN
+ IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+ SELECT del_id INTO delid
+ FROM DATA_ALL where id = NEW.data_id_parent;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ SELECT del_id INTO delid
+ FROM DATA_ALL where id = NEW.data_id_child;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ RETURN NEW;
+END;
+$$;
+CREATE FUNCTION preserve_deletion_consistency_on_sample_relationships() RETURNS trigger
+ LANGUAGE plpgsql
+ AS $$
+DECLARE
+ delid TECH_ID;
+BEGIN
+ IF (NEW.del_id IS NOT NULL OR OLD.del_id IS NULL) THEN
+ RETURN NEW;
+ END IF;
+ SELECT del_id INTO delid
+ FROM SAMPLES_ALL where id = NEW.sample_id_parent;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ SELECT del_id INTO delid
+ FROM SAMPLES_ALL where id = NEW.sample_id_child;
+ IF (delid IS NOT NULL) THEN
+ NEW.del_id = delid;
+ END IF;
+ RETURN NEW;
+END;
+$$;
CREATE FUNCTION rename_sequence(old_name character varying, new_name character varying) RETURNS integer
LANGUAGE plpgsql
AS $$