From 5457ba57740a06eb4b6ca6f1a2fb3b18c75284b1 Mon Sep 17 00:00:00 2001
From: felmer <felmer>
Date: Tue, 14 Jul 2009 09:57:15 +0000
Subject: [PATCH] LMS-1028 ProteinViewer: DataSetProteinGrid: FDR column added
SVN: 11740
---
.../client/web/client/application/Dict.java | 1 +
.../columns/DataSetProteinColDefKind.java | 22 +++++++++++++++++++
2 files changed, 23 insertions(+)
diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/Dict.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/Dict.java
index ee7668f7ee6..af0d137ea51 100644
--- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/Dict.java
+++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/Dict.java
@@ -43,6 +43,7 @@ public class Dict
public static final String DATA_SET_PERM_ID = "data_set_perm_id";
public static final String PEPTIDE_COUNT = "peptide_count";
public static final String SEQUENCE_NAME = "sequence_name";
+ public static final String FDR = "false_discovery_rate_column";
diff --git a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/columns/DataSetProteinColDefKind.java b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/columns/DataSetProteinColDefKind.java
index 9617da5e34c..2c80e1fe09f 100644
--- a/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/columns/DataSetProteinColDefKind.java
+++ b/rtd_phosphonetx/source/java/ch/systemsx/cisd/openbis/plugin/phosphonetx/client/web/client/application/columns/DataSetProteinColDefKind.java
@@ -52,8 +52,30 @@ public enum DataSetProteinColDefKind implements IColumnDefinitionKind<DataSetPro
{
return Integer.toString(entity.getPeptideCount());
}
+
+ @Override
+ public Comparable<?> getComparableValue(DataSetProtein entity)
+ {
+ return entity.getPeptideCount();
+ }
}),
+ FDR(new AbstractColumnDefinitionKind<DataSetProtein>(Dict.FDR, 80)
+ {
+ @Override
+ public String tryGetValue(DataSetProtein entity)
+ {
+ int perMille = (int) (1000 * entity.getFalseDiscoveryRate() + 0.5);
+ return (perMille / 10) + "." + (perMille % 10) + " %";
+ }
+
+ @Override
+ public Comparable<?> getComparableValue(DataSetProtein entity)
+ {
+ return entity.getFalseDiscoveryRate();
+ }
+ }),
+
;
private final AbstractColumnDefinitionKind<DataSetProtein> columnDefinitionKind;
--
GitLab