From 4d37b4888ff214b6f56ceee20ae26f67b5bd9a19 Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Mon, 15 Dec 2014 15:50:01 +0000
Subject: [PATCH] add first tests of QGF/GFB drop boxes
SVN: 33062
---
deep_sequencing_unit/etc/service.properties | 2 +
.../RunInfo.xml | 888 +++
.../RunParameters.xml | 926 +++
.../RTAComplete.txt | 1 +
.../core-plugins/core-plugins.properties | 2 +-
.../1/as/webapps/.gc3pie/html/body-style.css | 4 +
.../html/bootstrap3/css/bootstrap-theme.css | 384 +
.../bootstrap3/css/bootstrap-theme.min.css | 1 +
.../.gc3pie/html/bootstrap3/css/bootstrap.css | 6805 +++++++++++++++++
.../html/bootstrap3/css/bootstrap.min.css | 9 +
.../fonts/glyphicons-halflings-regular.eot | Bin 0 -> 14079 bytes
.../fonts/glyphicons-halflings-regular.svg | 228 +
.../fonts/glyphicons-halflings-regular.ttf | Bin 0 -> 29512 bytes
.../fonts/glyphicons-halflings-regular.woff | Bin 0 -> 16448 bytes
.../.gc3pie/html/bootstrap3/js/bootstrap.js | 1999 +++++
.../html/bootstrap3/js/bootstrap.min.js | 6 +
.../1/as/webapps/.gc3pie/html/button.css | 54 +
.../1/as/webapps/.gc3pie/html/d3.v2.min.js | 4 +
.../.gc3pie/html/images/openBIS_Logo.svg | 68 +
.../1/as/webapps/.gc3pie/html/index.html | 452 ++
.../1/as/webapps/.gc3pie/html/index.html.sv | 314 +
.../1/as/webapps/.gc3pie/html/index2.html | 14 +
.../webapps/.gc3pie/html/jquery-1.8.2.min.js | 2 +
.../.gc3pie/html/openbis-action-deferrer.js | 31 +
.../1/as/webapps/.gc3pie/html/openbis-dsu.js | 103 +
.../as/webapps/.gc3pie/html/openbis-login.js | 77 +
.../.gc3pie/html/openbis-request-cache.js | 51 +
.../webapps/.gc3pie/html/openbis-screening.js | 655 ++
.../1/as/webapps/.gc3pie/html/openbis.js | 1987 +++++
.../1/as/webapps/.gc3pie/html/spin.min.js | 2 +
.../1/as/webapps/.gc3pie/plugin.properties | 6 +
.../1/as/webapps/bee/html/index.html | 428 ++
.../1/as/webapps/bee/plugin.properties | 6 +
.../as/webapps/cellStatistics/html/index.html | 263 +
.../as/webapps/cellStatistics/html/style.css | 47 +
.../webapps/cellStatistics/plugin.properties | 6 +
.../html/bootstrap3/css/bootstrap-theme.css | 442 ++
.../bootstrap3/css/bootstrap-theme.css.map | 1 +
.../bootstrap3/css/bootstrap-theme.min.css | 5 +
.../html/bootstrap3/css/bootstrap.css | 6203 +++++++++++++++
.../html/bootstrap3/css/bootstrap.css.map | 1 +
.../html/bootstrap3/css/bootstrap.min.css | 5 +
.../fonts/glyphicons-halflings-regular.eot | Bin 0 -> 20335 bytes
.../fonts/glyphicons-halflings-regular.svg | 229 +
.../fonts/glyphicons-halflings-regular.ttf | Bin 0 -> 41280 bytes
.../fonts/glyphicons-halflings-regular.woff | Bin 0 -> 23320 bytes
.../html/bootstrap3/js/bootstrap.js | 2114 +++++
.../html/bootstrap3/js/bootstrap.min.js | 6 +
.../css/bootstrapValidator.min.css | 13 +
.../js/bootstrapValidator.min.js | 13 +
.../webapps/demultiplexing/html/css/main.css | 8 +
.../html/images/openBIS_Logo.svg | 68 +
.../as/webapps/demultiplexing/html/index.html | 175 +
.../demultiplexing/html/js/d3.v2.min.js | 4 +
.../html/js/jquery-1.8.2.min.js | 2 +
.../as/webapps/demultiplexing/html/js/main.js | 180 +
.../html/js/openbis-action-deferrer.js | 31 +
.../demultiplexing/html/js/openbis-dsu.js | 103 +
.../demultiplexing/html/js/openbis-login.js | 77 +
.../html/js/openbis-request-cache.js | 51 +
.../html/js/openbis-screening.js | 655 ++
.../webapps/demultiplexing/html/js/openbis.js | 1987 +++++
.../demultiplexing/html/js/spin.min.js | 2 +
.../webapps/demultiplexing/plugin.properties | 6 +
.../as/webapps/downloader/html/body-style.css | 60 +
.../1/as/webapps/downloader/html/button.css | 39 +
.../1/as/webapps/downloader/html/d3.time.js | 692 ++
.../downloader/html/images/openBIS_Logo.svg | 68 +
.../webapps/downloader/html/images/sprite.png | Bin 0 -> 748 bytes
.../1/as/webapps/downloader/html/index.html | 1 +
.../html/openbis-dsu-downloader.html | 836 ++
.../1/as/webapps/downloader/html/tree.css | 138 +
.../1/as/webapps/downloader/plugin.properties | 3 +
.../1/as/webapps/invoicing/html/index.html | 179 +
.../1/as/webapps/invoicing/plugin.properties | 6 +
.../as/webapps/laneStatistics/html/index.html | 979 +++
.../as/webapps/laneStatistics/html/style.css | 52 +
.../webapps/laneStatistics/plugin.properties | 6 +
.../webapps/sampleSheet/html/body-style.css | 4 +
.../1/as/webapps/sampleSheet/html/button.css | 54 +
.../1/as/webapps/sampleSheet/html/index.html | 154 +
.../as/webapps/sampleSheet/plugin.properties | 6 +
.../create-flowcell-hiseq.py | 221 +
.../create-flowcell-hiseq/plugin.properties | 12 +
.../create-flow-cell-miseq.py | 251 +
.../create-flowcell-miseq/plugin.properties | 12 +
.../create-flow-cell-nextseq.py | 280 +
.../create-flowcell-nextseq/plugin.properties | 12 +
.../plugin.properties | 10 +
.../read-demultiplex-stats-miseq.py | 545 ++
.../plugin.properties | 10 +
.../read-demultiplex-stats-nextseq.py | 545 ++
.../read-demultiplex-stats/plugin.properties | 10 +
.../read-demultiplex-stats.py | 544 ++
.../read-rta-timestamp/plugin.properties | 11 +
.../read-rta-timestamp/read-rta-timestamp.py | 49 +
.../register-basecall-stats/plugin.properties | 11 +
.../register-basecall-stats.py | 51 +
.../drop-boxes/register-bee/plugin.properties | 11 +
.../drop-boxes/register-bee/register-bee.py | 64 +
.../register-bigwig/plugin.properties | 10 +
.../register-bigwig/register-bigwig.py | 140 +
.../register-bowtie/plugin.properties | 11 +
.../register-bowtie/register-bowtie.py | 40 +
...gnmentJavaDataSetRegistrationDropboxV2.jar | Bin 0 -> 3750 bytes
.../lib/alignment.jar.sv | Bin 0 -> 2103 bytes
.../lib/alignment.jar.sv2 | Bin 0 -> 2103 bytes
.../plugin.properties | 7 +
.../register-fastqc/plugin.properties | 11 +
.../register-fastqc/register-fastqc.py | 82 +
.../register-flowcell-hiseq/plugin.properties | 12 +
.../register-flowcell-hiseq.py | 96 +
.../register-flowcell-miseq/plugin.properties | 12 +
.../register-flowcell-miseq.py | 60 +
.../plugin.properties | 12 +
.../register-flowcell-nextseq.py | 62 +
.../drop-boxes/register-lane-hiseq/lib/crc32 | Bin 0 -> 13196 bytes
.../register-lane-hiseq/plugin.properties | 12 +
.../register-lane-hiseq.py | 504 ++
.../drop-boxes/register-lane-miseq/lib/crc32 | Bin 0 -> 13196 bytes
.../register-lane-miseq/plugin.properties | 12 +
.../register-lane-miseq.py | 327 +
.../register-lane-nextseq/lib/crc32 | Bin 0 -> 13196 bytes
.../register-lane-nextseq/plugin.properties | 12 +
.../register-lane-nextseq.py | 409 +
.../register-macs/plugin.properties | 11 +
.../drop-boxes/register-macs/register-macs.py | 22 +
.../register-runstatistics/plugin.properties | 11 +
.../register-runstatistics.py | 73 +
.../register-thumbnails/plugin.properties | 12 +
.../register-thumbnails.py | 55 +
.../plugin.properties | 11 +
.../register-unaligned-miseq.py | 176 +
.../register-unaligned/plugin.properties | 11 +
.../register-unaligned/register-unaligned.py | 195 +
.../register-undetermined/plugin.properties | 11 +
.../register-undetermined.py | 57 +
.../plugin.properties | 11 +
.../register-aggregated-basecall-stats.py | 72 +
.../setInvoiceSent/plugin.properties | 3 +
.../setInvoiceSent/script.py | 65 +
.../plugin.properties | 3 +
.../triggerCreateSampleSheet/script.py | 44 +
.../triggerInvoice/plugin.properties | 3 +
.../triggerInvoice/script.py | 75 +
.../triggerbee/lib/jyson-1.0.2.jar | Bin 0 -> 7805 bytes
.../triggerbee/plugin.properties | 3 +
.../reporting-plugins/triggerbee/script.py | 194 +
.../triggergc3pie/plugin.properties | 3 +
.../reporting-plugins/triggergc3pie/script.py | 201 +
.../dss/systemtests/DSUDropboxSystemTest.java | 6 +
.../systemtests/QGFCreateFlowcellNextseq.java | 43 +
.../dss/systemtests/QGFReadRtaTimestamp.java | 41 +
153 files changed, 37374 insertions(+), 1 deletion(-)
create mode 100644 deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunInfo.xml
create mode 100644 deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunParameters.xml
create mode 100644 deep_sequencing_unit/resource/test-data/QGFReadRtaTimestamp/141204_D00535_0035_BC5LPVANXX/RTAComplete.txt
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/body-style.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.min.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.min.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/fonts/glyphicons-halflings-regular.eot
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/fonts/glyphicons-halflings-regular.svg
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/fonts/glyphicons-halflings-regular.ttf
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/fonts/glyphicons-halflings-regular.woff
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/button.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/d3.v2.min.js
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/images/openBIS_Logo.svg
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html.sv
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index2.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/jquery-1.8.2.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-action-deferrer.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-dsu.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-login.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-request-cache.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-screening.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/spin.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/style.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css.map
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.min.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css.map
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.min.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/fonts/glyphicons-halflings-regular.eot
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/fonts/glyphicons-halflings-regular.svg
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/fonts/glyphicons-halflings-regular.ttf
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/fonts/glyphicons-halflings-regular.woff
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/css/bootstrapValidator.min.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/js/bootstrapValidator.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/css/main.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/images/openBIS_Logo.svg
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/d3.v2.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/jquery-1.8.2.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/main.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-action-deferrer.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-dsu.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-login.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-request-cache.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-screening.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/spin.min.js
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/body-style.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/button.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/d3.time.js
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/images/openBIS_Logo.svg
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/images/sprite.png
create mode 120000 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/openbis-dsu-downloader.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/tree.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/style.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/body-style.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/button.css
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/index.html
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/create-flow-cell-nextseq.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/read-demultiplex-stats-miseq.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/read-demultiplex-stats-nextseq.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/register-bee.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/register-bigwig.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/register-bowtie.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/AlignmentJavaDataSetRegistrationDropboxV2.jar
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/alignment.jar.sv
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/alignment.jar.sv2
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/register-fastqc.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties
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create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/register-flowcell-nextseq.py
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create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/plugin.properties
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create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/plugin.properties
create mode 100755 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/register-unaligned.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/plugin.properties
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/register-undetermined.py
create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/plugin.properties
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create mode 100644 deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/script.py
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create mode 100644 deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFCreateFlowcellNextseq.java
create mode 100644 deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFReadRtaTimestamp.java
diff --git a/deep_sequencing_unit/etc/service.properties b/deep_sequencing_unit/etc/service.properties
index 31fc7ffaa8a..0f4365d4d90 100644
--- a/deep_sequencing_unit/etc/service.properties
+++ b/deep_sequencing_unit/etc/service.properties
@@ -3,6 +3,8 @@ data-store-server-code = DSS1
# The root directory of the data store
storeroot-dir = targets/playground/store
+root = ${root-dir}
+incoming-root-dir = ${root-dir}
# The directory where the command queue file is located; defaults to storeroot-dir
commandqueue-dir =
diff --git a/deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunInfo.xml b/deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunInfo.xml
new file mode 100644
index 00000000000..168a72f9f21
--- /dev/null
+++ b/deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunInfo.xml
@@ -0,0 +1,888 @@
+<?xml version="1.0"?>
+<RunInfo xmlns:xsd="http://www.w3.org/2001/XMLSchema" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" Version="4">
+ <Run Id="141212_NS500318_0033_AH16YMBGXX" Number="33">
+ <Flowcell>H16YMBGXX</Flowcell>
+ <Instrument>NS500318</Instrument>
+ <Date>141212</Date>
+ <Reads>
+ <Read Number="1" NumCycles="76" IsIndexedRead="N" />
+ <Read Number="2" NumCycles="8" IsIndexedRead="Y" />
+ <Read Number="3" NumCycles="8" IsIndexedRead="Y" />
+ </Reads>
+ <FlowcellLayout LaneCount="4" SurfaceCount="2" SwathCount="3" TileCount="12" SectionPerLane="3" LanePerSection="2">
+ <TileSet TileNamingConvention="FiveDigit">
+ <Tiles>
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diff --git a/deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunParameters.xml b/deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunParameters.xml
new file mode 100644
index 00000000000..dadfb6c1ad6
--- /dev/null
+++ b/deep_sequencing_unit/resource/test-data/QGFCreateFlowcellNextseq/141212_NS500318_0033_AH16YMBGXX/RunParameters.xml
@@ -0,0 +1,926 @@
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+ <RunFolder>D:\Illumina\NextSeq Control Software Temp\141212_NS500318_0033_AH16YMBGXX\</RunFolder>
+ <OutputFolder>Y:\r2d2\141212_NS500318_0033_AH16YMBGXX\</OutputFolder>
+ <RecipeFolder>C:\Illumina\NextSeq Control Software\Recipe\High\v1.1</RecipeFolder>
+ <SimulationFolder />
+ <RunStartDate>141212</RunStartDate>
+ <FocusMethod>IXFocus</FocusMethod>
+ <SurfaceToScan>Both</SurfaceToScan>
+ <SaveFocusImages>false</SaveFocusImages>
+ <SaveScanImages>false</SaveScanImages>
+ <SelectiveSave>true</SelectiveSave>
+ <IsPairedEnd>false</IsPairedEnd>
+ <AnalysisWorkflowType />
+ <CustomReadOnePrimer>BP10</CustomReadOnePrimer>
+ <CustomReadTwoPrimer>BP11</CustomReadTwoPrimer>
+ <CustomIndexPrimer>BP12</CustomIndexPrimer>
+ <CustomIndexTwoPrimer>EXT</CustomIndexTwoPrimer>
+ <UsesCustomReadOnePrimer>false</UsesCustomReadOnePrimer>
+ <UsesCustomReadTwoPrimer>false</UsesCustomReadTwoPrimer>
+ <UsesCustomIndexPrimer>false</UsesCustomIndexPrimer>
+ <UsesCustomIndexTwoPrimer>false</UsesCustomIndexTwoPrimer>
+ <RunManagementType>Standalone</RunManagementType>
+ <BaseSpaceRunId>9643683</BaseSpaceRunId>
+ <BaseSpaceRunMode>IlluminaHealthOnly</BaseSpaceRunMode>
+ <ComputerName>BS-DSFCONTROL05</ComputerName>
+ <SequencingStarted>true</SequencingStarted>
+ <PlannedRead1Cycles>76</PlannedRead1Cycles>
+ <PlannedRead2Cycles>0</PlannedRead2Cycles>
+ <PlannedIndex1ReadCycles>8</PlannedIndex1ReadCycles>
+ <PlannedIndex2ReadCycles>8</PlannedIndex2ReadCycles>
+ <IsRehyb>false</IsRehyb>
+ <MaxCyclesSupportedByReagentKit>92</MaxCyclesSupportedByReagentKit>
+</RunParameters>
\ No newline at end of file
diff --git a/deep_sequencing_unit/resource/test-data/QGFReadRtaTimestamp/141204_D00535_0035_BC5LPVANXX/RTAComplete.txt b/deep_sequencing_unit/resource/test-data/QGFReadRtaTimestamp/141204_D00535_0035_BC5LPVANXX/RTAComplete.txt
new file mode 100644
index 00000000000..3a3b0960199
--- /dev/null
+++ b/deep_sequencing_unit/resource/test-data/QGFReadRtaTimestamp/141204_D00535_0035_BC5LPVANXX/RTAComplete.txt
@@ -0,0 +1 @@
+12/5/2014,16:47:09.380,Illumina RTA 1.18.61
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/core-plugins.properties b/deep_sequencing_unit/sourceTest/core-plugins/core-plugins.properties
index e8cf1600e38..3067caffb05 100644
--- a/deep_sequencing_unit/sourceTest/core-plugins/core-plugins.properties
+++ b/deep_sequencing_unit/sourceTest/core-plugins/core-plugins.properties
@@ -1 +1 @@
-enabled-modules = dropbox-test
\ No newline at end of file
+enabled-modules = dropbox-test, illumina-qgf
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/body-style.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/body-style.css
new file mode 100644
index 00000000000..629f097de8b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/body-style.css
@@ -0,0 +1,4 @@
+body { font: 14px "Trebuchet MS", sans-serif; }
+
+h1 { font: 16px; }
+h3 { font: 12px; }
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.css
new file mode 100644
index 00000000000..ad117356937
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.css
@@ -0,0 +1,384 @@
+.btn-default,
+.btn-primary,
+.btn-success,
+.btn-info,
+.btn-warning,
+.btn-danger {
+ text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.2);
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 1px rgba(0, 0, 0, 0.075);
+}
+
+.btn-default:active,
+.btn-primary:active,
+.btn-success:active,
+.btn-info:active,
+.btn-warning:active,
+.btn-danger:active,
+.btn-default.active,
+.btn-primary.active,
+.btn-success.active,
+.btn-info.active,
+.btn-warning.active,
+.btn-danger.active {
+ -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
+ box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
+}
+
+.btn:active,
+.btn.active {
+ background-image: none;
+}
+
+.btn-default {
+ text-shadow: 0 1px 0 #fff;
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#ffffff), to(#e6e6e6));
+ background-image: -webkit-linear-gradient(top, #ffffff, 0%, #e6e6e6, 100%);
+ background-image: -moz-linear-gradient(top, #ffffff 0%, #e6e6e6 100%);
+ background-image: linear-gradient(to bottom, #ffffff 0%, #e6e6e6 100%);
+ background-repeat: repeat-x;
+ border-color: #e0e0e0;
+ border-color: #ccc;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe6e6e6', GradientType=0);
+}
+
+.btn-default:active,
+.btn-default.active {
+ background-color: #e6e6e6;
+ border-color: #e0e0e0;
+}
+
+.btn-primary {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#428bca), to(#3071a9));
+ background-image: -webkit-linear-gradient(top, #428bca, 0%, #3071a9, 100%);
+ background-image: -moz-linear-gradient(top, #428bca 0%, #3071a9 100%);
+ background-image: linear-gradient(to bottom, #428bca 0%, #3071a9 100%);
+ background-repeat: repeat-x;
+ border-color: #2d6ca2;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff3071a9', GradientType=0);
+}
+
+.btn-primary:active,
+.btn-primary.active {
+ background-color: #3071a9;
+ border-color: #2d6ca2;
+}
+
+.btn-success {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#5cb85c), to(#449d44));
+ background-image: -webkit-linear-gradient(top, #5cb85c, 0%, #449d44, 100%);
+ background-image: -moz-linear-gradient(top, #5cb85c 0%, #449d44 100%);
+ background-image: linear-gradient(to bottom, #5cb85c 0%, #449d44 100%);
+ background-repeat: repeat-x;
+ border-color: #419641;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff449d44', GradientType=0);
+}
+
+.btn-success:active,
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+ background-color: #449d44;
+ border-color: #419641;
+}
+
+.btn-warning {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#f0ad4e), to(#ec971f));
+ background-image: -webkit-linear-gradient(top, #f0ad4e, 0%, #ec971f, 100%);
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+ background-image: linear-gradient(to bottom, #f0ad4e 0%, #ec971f 100%);
+ background-repeat: repeat-x;
+ border-color: #eb9316;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffec971f', GradientType=0);
+}
+
+.btn-warning:active,
+.btn-warning.active {
+ background-color: #ec971f;
+ border-color: #eb9316;
+}
+
+.btn-danger {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#d9534f), to(#c9302c));
+ background-image: -webkit-linear-gradient(top, #d9534f, 0%, #c9302c, 100%);
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+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc9302c', GradientType=0);
+}
+
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+ border-color: #c12e2a;
+}
+
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+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#5bc0de), to(#31b0d5));
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+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff31b0d5', GradientType=0);
+}
+
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+ background-color: #31b0d5;
+ border-color: #2aabd2;
+}
+
+.thumbnail,
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+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);
+}
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+.dropdown-menu > .active > a:hover,
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+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#428bca), to(#357ebd));
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff357ebd', GradientType=0);
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+ background-image: -webkit-linear-gradient(top, #ffffff, 0%, #f8f8f8, 100%);
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+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.15), 0 1px 5px rgba(0, 0, 0, 0.075);
+}
+
+.navbar .navbar-nav > .active > a {
+ background-color: #f8f8f8;
+}
+
+.navbar-brand,
+.navbar-nav > li > a {
+ text-shadow: 0 1px 0 rgba(255, 255, 255, 0.25);
+}
+
+.navbar-inverse {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#3c3c3c), to(#222222));
+ background-image: -webkit-linear-gradient(top, #3c3c3c, 0%, #222222, 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff3c3c3c', endColorstr='#ff222222', GradientType=0);
+}
+
+.navbar-inverse .navbar-nav > .active > a {
+ background-color: #222222;
+}
+
+.navbar-inverse .navbar-brand,
+.navbar-inverse .navbar-nav > li > a {
+ text-shadow: 0 -1px 0 rgba(0, 0, 0, 0.25);
+}
+
+.navbar-static-top,
+.navbar-fixed-top,
+.navbar-fixed-bottom {
+ border-radius: 0;
+}
+
+.alert {
+ text-shadow: 0 1px 0 rgba(255, 255, 255, 0.2);
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.25), 0 1px 2px rgba(0, 0, 0, 0.05);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.25), 0 1px 2px rgba(0, 0, 0, 0.05);
+}
+
+.alert-success {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#dff0d8), to(#c8e5bc));
+ background-image: -webkit-linear-gradient(top, #dff0d8, 0%, #c8e5bc, 100%);
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+ background-repeat: repeat-x;
+ border-color: #b2dba1;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffc8e5bc', GradientType=0);
+}
+
+.alert-info {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#d9edf7), to(#b9def0));
+ background-image: -webkit-linear-gradient(top, #d9edf7, 0%, #b9def0, 100%);
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+ background-image: linear-gradient(to bottom, #d9edf7 0%, #b9def0 100%);
+ background-repeat: repeat-x;
+ border-color: #9acfea;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffb9def0', GradientType=0);
+}
+
+.alert-warning {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#fcf8e3), to(#f8efc0));
+ background-image: -webkit-linear-gradient(top, #fcf8e3, 0%, #f8efc0, 100%);
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+ background-image: linear-gradient(to bottom, #fcf8e3 0%, #f8efc0 100%);
+ background-repeat: repeat-x;
+ border-color: #f5e79e;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fff8efc0', GradientType=0);
+}
+
+.alert-danger {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#f2dede), to(#e7c3c3));
+ background-image: -webkit-linear-gradient(top, #f2dede, 0%, #e7c3c3, 100%);
+ background-image: -moz-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
+ background-image: linear-gradient(to bottom, #f2dede 0%, #e7c3c3 100%);
+ background-repeat: repeat-x;
+ border-color: #dca7a7;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffe7c3c3', GradientType=0);
+}
+
+.progress {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#ebebeb), to(#f5f5f5));
+ background-image: -webkit-linear-gradient(top, #ebebeb, 0%, #f5f5f5, 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffebebeb', endColorstr='#fff5f5f5', GradientType=0);
+}
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+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#428bca), to(#3071a9));
+ background-image: -webkit-linear-gradient(top, #428bca, 0%, #3071a9, 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff3071a9', GradientType=0);
+}
+
+.progress-bar-success {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#5cb85c), to(#449d44));
+ background-image: -webkit-linear-gradient(top, #5cb85c, 0%, #449d44, 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff449d44', GradientType=0);
+}
+
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+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#5bc0de), to(#31b0d5));
+ background-image: -webkit-linear-gradient(top, #5bc0de, 0%, #31b0d5, 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff31b0d5', GradientType=0);
+}
+
+.progress-bar-warning {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#f0ad4e), to(#ec971f));
+ background-image: -webkit-linear-gradient(top, #f0ad4e, 0%, #ec971f, 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffec971f', GradientType=0);
+}
+
+.progress-bar-danger {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#d9534f), to(#c9302c));
+ background-image: -webkit-linear-gradient(top, #d9534f, 0%, #c9302c, 100%);
+ background-image: -moz-linear-gradient(top, #d9534f 0%, #c9302c 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc9302c', GradientType=0);
+}
+
+.list-group {
+ border-radius: 4px;
+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, 0.075);
+}
+
+.list-group-item.active,
+.list-group-item.active:hover,
+.list-group-item.active:focus {
+ text-shadow: 0 -1px 0 #3071a9;
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#428bca), to(#3278b3));
+ background-image: -webkit-linear-gradient(top, #428bca, 0%, #3278b3, 100%);
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+ border-color: #3278b3;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff3278b3', GradientType=0);
+}
+
+.panel {
+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, 0.05);
+}
+
+.panel-default > .panel-heading {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#f5f5f5), to(#e8e8e8));
+ background-image: -webkit-linear-gradient(top, #f5f5f5, 0%, #e8e8e8, 100%);
+ background-image: -moz-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+ background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
+}
+
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+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#428bca), to(#357ebd));
+ background-image: -webkit-linear-gradient(top, #428bca, 0%, #357ebd, 100%);
+ background-image: -moz-linear-gradient(top, #428bca 0%, #357ebd 100%);
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+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff357ebd', GradientType=0);
+}
+
+.panel-success > .panel-heading {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#dff0d8), to(#d0e9c6));
+ background-image: -webkit-linear-gradient(top, #dff0d8, 0%, #d0e9c6, 100%);
+ background-image: -moz-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);
+ background-image: linear-gradient(to bottom, #dff0d8 0%, #d0e9c6 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffd0e9c6', GradientType=0);
+}
+
+.panel-info > .panel-heading {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#d9edf7), to(#c4e3f3));
+ background-image: -webkit-linear-gradient(top, #d9edf7, 0%, #c4e3f3, 100%);
+ background-image: -moz-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);
+ background-image: linear-gradient(to bottom, #d9edf7 0%, #c4e3f3 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffc4e3f3', GradientType=0);
+}
+
+.panel-warning > .panel-heading {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#fcf8e3), to(#faf2cc));
+ background-image: -webkit-linear-gradient(top, #fcf8e3, 0%, #faf2cc, 100%);
+ background-image: -moz-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);
+ background-image: linear-gradient(to bottom, #fcf8e3 0%, #faf2cc 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fffaf2cc', GradientType=0);
+}
+
+.panel-danger > .panel-heading {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#f2dede), to(#ebcccc));
+ background-image: -webkit-linear-gradient(top, #f2dede, 0%, #ebcccc, 100%);
+ background-image: -moz-linear-gradient(top, #f2dede 0%, #ebcccc 100%);
+ background-image: linear-gradient(to bottom, #f2dede 0%, #ebcccc 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffebcccc', GradientType=0);
+}
+
+.well {
+ background-image: -webkit-gradient(linear, left 0%, left 100%, from(#e8e8e8), to(#f5f5f5));
+ background-image: -webkit-linear-gradient(top, #e8e8e8, 0%, #f5f5f5, 100%);
+ background-image: -moz-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);
+ background-image: linear-gradient(to bottom, #e8e8e8 0%, #f5f5f5 100%);
+ background-repeat: repeat-x;
+ border-color: #dcdcdc;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffe8e8e8', endColorstr='#fff5f5f5', GradientType=0);
+ -webkit-box-shadow: inset 0 1px 3px rgba(0, 0, 0, 0.05), 0 1px 0 rgba(255, 255, 255, 0.1);
+ box-shadow: inset 0 1px 3px rgba(0, 0, 0, 0.05), 0 1px 0 rgba(255, 255, 255, 0.1);
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.min.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.min.css
new file mode 100644
index 00000000000..cad36b4e600
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap-theme.min.css
@@ -0,0 +1 @@
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\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.css
new file mode 100644
index 00000000000..bbda4eed4af
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.css
@@ -0,0 +1,6805 @@
+/*!
+ * Bootstrap v3.0.0
+ *
+ * Copyright 2013 Twitter, Inc
+ * Licensed under the Apache License v2.0
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Designed and built with all the love in the world by @mdo and @fat.
+ */
+
+/*! normalize.css v2.1.0 | MIT License | git.io/normalize */
+
+article,
+aside,
+details,
+figcaption,
+figure,
+footer,
+header,
+hgroup,
+main,
+nav,
+section,
+summary {
+ display: block;
+}
+
+audio,
+canvas,
+video {
+ display: inline-block;
+}
+
+audio:not([controls]) {
+ display: none;
+ height: 0;
+}
+
+[hidden] {
+ display: none;
+}
+
+html {
+ font-family: sans-serif;
+ -webkit-text-size-adjust: 100%;
+ -ms-text-size-adjust: 100%;
+}
+
+body {
+ margin: 0;
+}
+
+a:focus {
+ outline: thin dotted;
+}
+
+a:active,
+a:hover {
+ outline: 0;
+}
+
+h1 {
+ margin: 0.67em 0;
+ font-size: 2em;
+}
+
+abbr[title] {
+ border-bottom: 1px dotted;
+}
+
+b,
+strong {
+ font-weight: bold;
+}
+
+dfn {
+ font-style: italic;
+}
+
+hr {
+ height: 0;
+ -moz-box-sizing: content-box;
+ box-sizing: content-box;
+}
+
+mark {
+ color: #000;
+ background: #ff0;
+}
+
+code,
+kbd,
+pre,
+samp {
+ font-family: monospace, serif;
+ font-size: 1em;
+}
+
+pre {
+ white-space: pre-wrap;
+}
+
+q {
+ quotes: "\201C" "\201D" "\2018" "\2019";
+}
+
+small {
+ font-size: 80%;
+}
+
+sub,
+sup {
+ position: relative;
+ font-size: 75%;
+ line-height: 0;
+ vertical-align: baseline;
+}
+
+sup {
+ top: -0.5em;
+}
+
+sub {
+ bottom: -0.25em;
+}
+
+img {
+ border: 0;
+}
+
+svg:not(:root) {
+ overflow: hidden;
+}
+
+figure {
+ margin: 0;
+}
+
+fieldset {
+ padding: 0.35em 0.625em 0.75em;
+ margin: 0 2px;
+ border: 1px solid #c0c0c0;
+}
+
+legend {
+ padding: 0;
+ border: 0;
+}
+
+button,
+input,
+select,
+textarea {
+ margin: 0;
+ font-family: inherit;
+ font-size: 100%;
+}
+
+button,
+input {
+ line-height: normal;
+}
+
+button,
+select {
+ text-transform: none;
+}
+
+button,
+html input[type="button"],
+input[type="reset"],
+input[type="submit"] {
+ cursor: pointer;
+ -webkit-appearance: button;
+}
+
+button[disabled],
+html input[disabled] {
+ cursor: default;
+}
+
+input[type="checkbox"],
+input[type="radio"] {
+ padding: 0;
+ box-sizing: border-box;
+}
+
+input[type="search"] {
+ -webkit-box-sizing: content-box;
+ -moz-box-sizing: content-box;
+ box-sizing: content-box;
+ -webkit-appearance: textfield;
+}
+
+input[type="search"]::-webkit-search-cancel-button,
+input[type="search"]::-webkit-search-decoration {
+ -webkit-appearance: none;
+}
+
+button::-moz-focus-inner,
+input::-moz-focus-inner {
+ padding: 0;
+ border: 0;
+}
+
+textarea {
+ overflow: auto;
+ vertical-align: top;
+}
+
+table {
+ border-collapse: collapse;
+ border-spacing: 0;
+}
+
+@media print {
+ * {
+ color: #000 !important;
+ text-shadow: none !important;
+ background: transparent !important;
+ box-shadow: none !important;
+ }
+ a,
+ a:visited {
+ text-decoration: underline;
+ }
+ a[href]:after {
+ content: " (" attr(href) ")";
+ }
+ abbr[title]:after {
+ content: " (" attr(title) ")";
+ }
+ .ir a:after,
+ a[href^="javascript:"]:after,
+ a[href^="#"]:after {
+ content: "";
+ }
+ pre,
+ blockquote {
+ border: 1px solid #999;
+ page-break-inside: avoid;
+ }
+ thead {
+ display: table-header-group;
+ }
+ tr,
+ img {
+ page-break-inside: avoid;
+ }
+ img {
+ max-width: 100% !important;
+ }
+ @page {
+ margin: 2cm .5cm;
+ }
+ p,
+ h2,
+ h3 {
+ orphans: 3;
+ widows: 3;
+ }
+ h2,
+ h3 {
+ page-break-after: avoid;
+ }
+ .navbar {
+ display: none;
+ }
+ .table td,
+ .table th {
+ background-color: #fff !important;
+ }
+ .btn > .caret,
+ .dropup > .btn > .caret {
+ border-top-color: #000 !important;
+ }
+ .label {
+ border: 1px solid #000;
+ }
+ .table {
+ border-collapse: collapse !important;
+ }
+ .table-bordered th,
+ .table-bordered td {
+ border: 1px solid #ddd !important;
+ }
+}
+
+*,
+*:before,
+*:after {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+}
+
+html {
+ font-size: 62.5%;
+ -webkit-tap-highlight-color: rgba(0, 0, 0, 0);
+}
+
+body {
+ font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
+ font-size: 14px;
+ line-height: 1.428571429;
+ color: #333333;
+ background-color: #ffffff;
+}
+
+input,
+button,
+select,
+textarea {
+ font-family: inherit;
+ font-size: inherit;
+ line-height: inherit;
+}
+
+button,
+input,
+select[multiple],
+textarea {
+ background-image: none;
+}
+
+a {
+ color: #428bca;
+ text-decoration: none;
+}
+
+a:hover,
+a:focus {
+ color: #2a6496;
+ text-decoration: underline;
+}
+
+a:focus {
+ outline: thin dotted #333;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px;
+}
+
+img {
+ vertical-align: middle;
+}
+
+.img-responsive {
+ display: block;
+ height: auto;
+ max-width: 100%;
+}
+
+.img-rounded {
+ border-radius: 6px;
+}
+
+.img-thumbnail {
+ display: inline-block;
+ height: auto;
+ max-width: 100%;
+ padding: 4px;
+ line-height: 1.428571429;
+ background-color: #ffffff;
+ border: 1px solid #dddddd;
+ border-radius: 4px;
+ -webkit-transition: all 0.2s ease-in-out;
+ transition: all 0.2s ease-in-out;
+}
+
+.img-circle {
+ border-radius: 50%;
+}
+
+hr {
+ margin-top: 20px;
+ margin-bottom: 20px;
+ border: 0;
+ border-top: 1px solid #eeeeee;
+}
+
+.sr-only {
+ position: absolute;
+ width: 1px;
+ height: 1px;
+ padding: 0;
+ margin: -1px;
+ overflow: hidden;
+ clip: rect(0 0 0 0);
+ border: 0;
+}
+
+p {
+ margin: 0 0 10px;
+}
+
+.lead {
+ margin-bottom: 20px;
+ font-size: 16.099999999999998px;
+ font-weight: 200;
+ line-height: 1.4;
+}
+
+@media (min-width: 768px) {
+ .lead {
+ font-size: 21px;
+ }
+}
+
+small {
+ font-size: 85%;
+}
+
+cite {
+ font-style: normal;
+}
+
+.text-muted {
+ color: #999999;
+}
+
+.text-primary {
+ color: #428bca;
+}
+
+.text-warning {
+ color: #c09853;
+}
+
+.text-danger {
+ color: #b94a48;
+}
+
+.text-success {
+ color: #468847;
+}
+
+.text-info {
+ color: #3a87ad;
+}
+
+.text-left {
+ text-align: left;
+}
+
+.text-right {
+ text-align: right;
+}
+
+.text-center {
+ text-align: center;
+}
+
+h1,
+h2,
+h3,
+h4,
+h5,
+h6,
+.h1,
+.h2,
+.h3,
+.h4,
+.h5,
+.h6 {
+ font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
+ font-weight: 500;
+ line-height: 1.1;
+}
+
+h1 small,
+h2 small,
+h3 small,
+h4 small,
+h5 small,
+h6 small,
+.h1 small,
+.h2 small,
+.h3 small,
+.h4 small,
+.h5 small,
+.h6 small {
+ font-weight: normal;
+ line-height: 1;
+ color: #999999;
+}
+
+h1,
+h2,
+h3 {
+ margin-top: 20px;
+ margin-bottom: 10px;
+}
+
+h4,
+h5,
+h6 {
+ margin-top: 10px;
+ margin-bottom: 10px;
+}
+
+h1,
+.h1 {
+ font-size: 36px;
+}
+
+h2,
+.h2 {
+ font-size: 30px;
+}
+
+h3,
+.h3 {
+ font-size: 24px;
+}
+
+h4,
+.h4 {
+ font-size: 18px;
+}
+
+h5,
+.h5 {
+ font-size: 14px;
+}
+
+h6,
+.h6 {
+ font-size: 12px;
+}
+
+h1 small,
+.h1 small {
+ font-size: 24px;
+}
+
+h2 small,
+.h2 small {
+ font-size: 18px;
+}
+
+h3 small,
+.h3 small,
+h4 small,
+.h4 small {
+ font-size: 14px;
+}
+
+.page-header {
+ padding-bottom: 9px;
+ margin: 40px 0 20px;
+ border-bottom: 1px solid #eeeeee;
+}
+
+ul,
+ol {
+ margin-top: 0;
+ margin-bottom: 10px;
+}
+
+ul ul,
+ol ul,
+ul ol,
+ol ol {
+ margin-bottom: 0;
+}
+
+.list-unstyled {
+ padding-left: 0;
+ list-style: none;
+}
+
+.list-inline {
+ padding-left: 0;
+ list-style: none;
+}
+
+.list-inline > li {
+ display: inline-block;
+ padding-right: 5px;
+ padding-left: 5px;
+}
+
+dl {
+ margin-bottom: 20px;
+}
+
+dt,
+dd {
+ line-height: 1.428571429;
+}
+
+dt {
+ font-weight: bold;
+}
+
+dd {
+ margin-left: 0;
+}
+
+@media (min-width: 768px) {
+ .dl-horizontal dt {
+ float: left;
+ width: 160px;
+ overflow: hidden;
+ clear: left;
+ text-align: right;
+ text-overflow: ellipsis;
+ white-space: nowrap;
+ }
+ .dl-horizontal dd {
+ margin-left: 180px;
+ }
+ .dl-horizontal dd:before,
+ .dl-horizontal dd:after {
+ display: table;
+ content: " ";
+ }
+ .dl-horizontal dd:after {
+ clear: both;
+ }
+ .dl-horizontal dd:before,
+ .dl-horizontal dd:after {
+ display: table;
+ content: " ";
+ }
+ .dl-horizontal dd:after {
+ clear: both;
+ }
+}
+
+abbr[title],
+abbr[data-original-title] {
+ cursor: help;
+ border-bottom: 1px dotted #999999;
+}
+
+abbr.initialism {
+ font-size: 90%;
+ text-transform: uppercase;
+}
+
+blockquote {
+ padding: 10px 20px;
+ margin: 0 0 20px;
+ border-left: 5px solid #eeeeee;
+}
+
+blockquote p {
+ font-size: 17.5px;
+ font-weight: 300;
+ line-height: 1.25;
+}
+
+blockquote p:last-child {
+ margin-bottom: 0;
+}
+
+blockquote small {
+ display: block;
+ line-height: 1.428571429;
+ color: #999999;
+}
+
+blockquote small:before {
+ content: '\2014 \00A0';
+}
+
+blockquote.pull-right {
+ padding-right: 15px;
+ padding-left: 0;
+ border-right: 5px solid #eeeeee;
+ border-left: 0;
+}
+
+blockquote.pull-right p,
+blockquote.pull-right small {
+ text-align: right;
+}
+
+blockquote.pull-right small:before {
+ content: '';
+}
+
+blockquote.pull-right small:after {
+ content: '\00A0 \2014';
+}
+
+q:before,
+q:after,
+blockquote:before,
+blockquote:after {
+ content: "";
+}
+
+address {
+ display: block;
+ margin-bottom: 20px;
+ font-style: normal;
+ line-height: 1.428571429;
+}
+
+code,
+pre {
+ font-family: Monaco, Menlo, Consolas, "Courier New", monospace;
+}
+
+code {
+ padding: 2px 4px;
+ font-size: 90%;
+ color: #c7254e;
+ white-space: nowrap;
+ background-color: #f9f2f4;
+ border-radius: 4px;
+}
+
+pre {
+ display: block;
+ padding: 9.5px;
+ margin: 0 0 10px;
+ font-size: 13px;
+ line-height: 1.428571429;
+ color: #333333;
+ word-break: break-all;
+ word-wrap: break-word;
+ background-color: #f5f5f5;
+ border: 1px solid #cccccc;
+ border-radius: 4px;
+}
+
+pre.prettyprint {
+ margin-bottom: 20px;
+}
+
+pre code {
+ padding: 0;
+ font-size: inherit;
+ color: inherit;
+ white-space: pre-wrap;
+ background-color: transparent;
+ border: 0;
+}
+
+.pre-scrollable {
+ max-height: 340px;
+ overflow-y: scroll;
+}
+
+.container {
+ padding-right: 15px;
+ padding-left: 15px;
+ margin-right: auto;
+ margin-left: auto;
+}
+
+.container:before,
+.container:after {
+ display: table;
+ content: " ";
+}
+
+.container:after {
+ clear: both;
+}
+
+.container:before,
+.container:after {
+ display: table;
+ content: " ";
+}
+
+.container:after {
+ clear: both;
+}
+
+.row {
+ margin-right: -15px;
+ margin-left: -15px;
+}
+
+.row:before,
+.row:after {
+ display: table;
+ content: " ";
+}
+
+.row:after {
+ clear: both;
+}
+
+.row:before,
+.row:after {
+ display: table;
+ content: " ";
+}
+
+.row:after {
+ clear: both;
+}
+
+.col-xs-1,
+.col-xs-2,
+.col-xs-3,
+.col-xs-4,
+.col-xs-5,
+.col-xs-6,
+.col-xs-7,
+.col-xs-8,
+.col-xs-9,
+.col-xs-10,
+.col-xs-11,
+.col-xs-12,
+.col-sm-1,
+.col-sm-2,
+.col-sm-3,
+.col-sm-4,
+.col-sm-5,
+.col-sm-6,
+.col-sm-7,
+.col-sm-8,
+.col-sm-9,
+.col-sm-10,
+.col-sm-11,
+.col-sm-12,
+.col-md-1,
+.col-md-2,
+.col-md-3,
+.col-md-4,
+.col-md-5,
+.col-md-6,
+.col-md-7,
+.col-md-8,
+.col-md-9,
+.col-md-10,
+.col-md-11,
+.col-md-12,
+.col-lg-1,
+.col-lg-2,
+.col-lg-3,
+.col-lg-4,
+.col-lg-5,
+.col-lg-6,
+.col-lg-7,
+.col-lg-8,
+.col-lg-9,
+.col-lg-10,
+.col-lg-11,
+.col-lg-12 {
+ position: relative;
+ min-height: 1px;
+ padding-right: 15px;
+ padding-left: 15px;
+}
+
+.col-xs-1,
+.col-xs-2,
+.col-xs-3,
+.col-xs-4,
+.col-xs-5,
+.col-xs-6,
+.col-xs-7,
+.col-xs-8,
+.col-xs-9,
+.col-xs-10,
+.col-xs-11 {
+ float: left;
+}
+
+.col-xs-1 {
+ width: 8.333333333333332%;
+}
+
+.col-xs-2 {
+ width: 16.666666666666664%;
+}
+
+.col-xs-3 {
+ width: 25%;
+}
+
+.col-xs-4 {
+ width: 33.33333333333333%;
+}
+
+.col-xs-5 {
+ width: 41.66666666666667%;
+}
+
+.col-xs-6 {
+ width: 50%;
+}
+
+.col-xs-7 {
+ width: 58.333333333333336%;
+}
+
+.col-xs-8 {
+ width: 66.66666666666666%;
+}
+
+.col-xs-9 {
+ width: 75%;
+}
+
+.col-xs-10 {
+ width: 83.33333333333334%;
+}
+
+.col-xs-11 {
+ width: 91.66666666666666%;
+}
+
+.col-xs-12 {
+ width: 100%;
+}
+
+@media (min-width: 768px) {
+ .container {
+ max-width: 750px;
+ }
+ .col-sm-1,
+ .col-sm-2,
+ .col-sm-3,
+ .col-sm-4,
+ .col-sm-5,
+ .col-sm-6,
+ .col-sm-7,
+ .col-sm-8,
+ .col-sm-9,
+ .col-sm-10,
+ .col-sm-11 {
+ float: left;
+ }
+ .col-sm-1 {
+ width: 8.333333333333332%;
+ }
+ .col-sm-2 {
+ width: 16.666666666666664%;
+ }
+ .col-sm-3 {
+ width: 25%;
+ }
+ .col-sm-4 {
+ width: 33.33333333333333%;
+ }
+ .col-sm-5 {
+ width: 41.66666666666667%;
+ }
+ .col-sm-6 {
+ width: 50%;
+ }
+ .col-sm-7 {
+ width: 58.333333333333336%;
+ }
+ .col-sm-8 {
+ width: 66.66666666666666%;
+ }
+ .col-sm-9 {
+ width: 75%;
+ }
+ .col-sm-10 {
+ width: 83.33333333333334%;
+ }
+ .col-sm-11 {
+ width: 91.66666666666666%;
+ }
+ .col-sm-12 {
+ width: 100%;
+ }
+ .col-sm-push-1 {
+ left: 8.333333333333332%;
+ }
+ .col-sm-push-2 {
+ left: 16.666666666666664%;
+ }
+ .col-sm-push-3 {
+ left: 25%;
+ }
+ .col-sm-push-4 {
+ left: 33.33333333333333%;
+ }
+ .col-sm-push-5 {
+ left: 41.66666666666667%;
+ }
+ .col-sm-push-6 {
+ left: 50%;
+ }
+ .col-sm-push-7 {
+ left: 58.333333333333336%;
+ }
+ .col-sm-push-8 {
+ left: 66.66666666666666%;
+ }
+ .col-sm-push-9 {
+ left: 75%;
+ }
+ .col-sm-push-10 {
+ left: 83.33333333333334%;
+ }
+ .col-sm-push-11 {
+ left: 91.66666666666666%;
+ }
+ .col-sm-pull-1 {
+ right: 8.333333333333332%;
+ }
+ .col-sm-pull-2 {
+ right: 16.666666666666664%;
+ }
+ .col-sm-pull-3 {
+ right: 25%;
+ }
+ .col-sm-pull-4 {
+ right: 33.33333333333333%;
+ }
+ .col-sm-pull-5 {
+ right: 41.66666666666667%;
+ }
+ .col-sm-pull-6 {
+ right: 50%;
+ }
+ .col-sm-pull-7 {
+ right: 58.333333333333336%;
+ }
+ .col-sm-pull-8 {
+ right: 66.66666666666666%;
+ }
+ .col-sm-pull-9 {
+ right: 75%;
+ }
+ .col-sm-pull-10 {
+ right: 83.33333333333334%;
+ }
+ .col-sm-pull-11 {
+ right: 91.66666666666666%;
+ }
+ .col-sm-offset-1 {
+ margin-left: 8.333333333333332%;
+ }
+ .col-sm-offset-2 {
+ margin-left: 16.666666666666664%;
+ }
+ .col-sm-offset-3 {
+ margin-left: 25%;
+ }
+ .col-sm-offset-4 {
+ margin-left: 33.33333333333333%;
+ }
+ .col-sm-offset-5 {
+ margin-left: 41.66666666666667%;
+ }
+ .col-sm-offset-6 {
+ margin-left: 50%;
+ }
+ .col-sm-offset-7 {
+ margin-left: 58.333333333333336%;
+ }
+ .col-sm-offset-8 {
+ margin-left: 66.66666666666666%;
+ }
+ .col-sm-offset-9 {
+ margin-left: 75%;
+ }
+ .col-sm-offset-10 {
+ margin-left: 83.33333333333334%;
+ }
+ .col-sm-offset-11 {
+ margin-left: 91.66666666666666%;
+ }
+}
+
+@media (min-width: 992px) {
+ .container {
+ max-width: 970px;
+ }
+ .col-md-1,
+ .col-md-2,
+ .col-md-3,
+ .col-md-4,
+ .col-md-5,
+ .col-md-6,
+ .col-md-7,
+ .col-md-8,
+ .col-md-9,
+ .col-md-10,
+ .col-md-11 {
+ float: left;
+ }
+ .col-md-1 {
+ width: 8.333333333333332%;
+ }
+ .col-md-2 {
+ width: 16.666666666666664%;
+ }
+ .col-md-3 {
+ width: 25%;
+ }
+ .col-md-4 {
+ width: 33.33333333333333%;
+ }
+ .col-md-5 {
+ width: 41.66666666666667%;
+ }
+ .col-md-6 {
+ width: 50%;
+ }
+ .col-md-7 {
+ width: 58.333333333333336%;
+ }
+ .col-md-8 {
+ width: 66.66666666666666%;
+ }
+ .col-md-9 {
+ width: 75%;
+ }
+ .col-md-10 {
+ width: 83.33333333333334%;
+ }
+ .col-md-11 {
+ width: 91.66666666666666%;
+ }
+ .col-md-12 {
+ width: 100%;
+ }
+ .col-md-push-0 {
+ left: auto;
+ }
+ .col-md-push-1 {
+ left: 8.333333333333332%;
+ }
+ .col-md-push-2 {
+ left: 16.666666666666664%;
+ }
+ .col-md-push-3 {
+ left: 25%;
+ }
+ .col-md-push-4 {
+ left: 33.33333333333333%;
+ }
+ .col-md-push-5 {
+ left: 41.66666666666667%;
+ }
+ .col-md-push-6 {
+ left: 50%;
+ }
+ .col-md-push-7 {
+ left: 58.333333333333336%;
+ }
+ .col-md-push-8 {
+ left: 66.66666666666666%;
+ }
+ .col-md-push-9 {
+ left: 75%;
+ }
+ .col-md-push-10 {
+ left: 83.33333333333334%;
+ }
+ .col-md-push-11 {
+ left: 91.66666666666666%;
+ }
+ .col-md-pull-0 {
+ right: auto;
+ }
+ .col-md-pull-1 {
+ right: 8.333333333333332%;
+ }
+ .col-md-pull-2 {
+ right: 16.666666666666664%;
+ }
+ .col-md-pull-3 {
+ right: 25%;
+ }
+ .col-md-pull-4 {
+ right: 33.33333333333333%;
+ }
+ .col-md-pull-5 {
+ right: 41.66666666666667%;
+ }
+ .col-md-pull-6 {
+ right: 50%;
+ }
+ .col-md-pull-7 {
+ right: 58.333333333333336%;
+ }
+ .col-md-pull-8 {
+ right: 66.66666666666666%;
+ }
+ .col-md-pull-9 {
+ right: 75%;
+ }
+ .col-md-pull-10 {
+ right: 83.33333333333334%;
+ }
+ .col-md-pull-11 {
+ right: 91.66666666666666%;
+ }
+ .col-md-offset-0 {
+ margin-left: 0;
+ }
+ .col-md-offset-1 {
+ margin-left: 8.333333333333332%;
+ }
+ .col-md-offset-2 {
+ margin-left: 16.666666666666664%;
+ }
+ .col-md-offset-3 {
+ margin-left: 25%;
+ }
+ .col-md-offset-4 {
+ margin-left: 33.33333333333333%;
+ }
+ .col-md-offset-5 {
+ margin-left: 41.66666666666667%;
+ }
+ .col-md-offset-6 {
+ margin-left: 50%;
+ }
+ .col-md-offset-7 {
+ margin-left: 58.333333333333336%;
+ }
+ .col-md-offset-8 {
+ margin-left: 66.66666666666666%;
+ }
+ .col-md-offset-9 {
+ margin-left: 75%;
+ }
+ .col-md-offset-10 {
+ margin-left: 83.33333333333334%;
+ }
+ .col-md-offset-11 {
+ margin-left: 91.66666666666666%;
+ }
+}
+
+@media (min-width: 1200px) {
+ .container {
+ max-width: 1170px;
+ }
+ .col-lg-1,
+ .col-lg-2,
+ .col-lg-3,
+ .col-lg-4,
+ .col-lg-5,
+ .col-lg-6,
+ .col-lg-7,
+ .col-lg-8,
+ .col-lg-9,
+ .col-lg-10,
+ .col-lg-11 {
+ float: left;
+ }
+ .col-lg-1 {
+ width: 8.333333333333332%;
+ }
+ .col-lg-2 {
+ width: 16.666666666666664%;
+ }
+ .col-lg-3 {
+ width: 25%;
+ }
+ .col-lg-4 {
+ width: 33.33333333333333%;
+ }
+ .col-lg-5 {
+ width: 41.66666666666667%;
+ }
+ .col-lg-6 {
+ width: 50%;
+ }
+ .col-lg-7 {
+ width: 58.333333333333336%;
+ }
+ .col-lg-8 {
+ width: 66.66666666666666%;
+ }
+ .col-lg-9 {
+ width: 75%;
+ }
+ .col-lg-10 {
+ width: 83.33333333333334%;
+ }
+ .col-lg-11 {
+ width: 91.66666666666666%;
+ }
+ .col-lg-12 {
+ width: 100%;
+ }
+ .col-lg-push-0 {
+ left: auto;
+ }
+ .col-lg-push-1 {
+ left: 8.333333333333332%;
+ }
+ .col-lg-push-2 {
+ left: 16.666666666666664%;
+ }
+ .col-lg-push-3 {
+ left: 25%;
+ }
+ .col-lg-push-4 {
+ left: 33.33333333333333%;
+ }
+ .col-lg-push-5 {
+ left: 41.66666666666667%;
+ }
+ .col-lg-push-6 {
+ left: 50%;
+ }
+ .col-lg-push-7 {
+ left: 58.333333333333336%;
+ }
+ .col-lg-push-8 {
+ left: 66.66666666666666%;
+ }
+ .col-lg-push-9 {
+ left: 75%;
+ }
+ .col-lg-push-10 {
+ left: 83.33333333333334%;
+ }
+ .col-lg-push-11 {
+ left: 91.66666666666666%;
+ }
+ .col-lg-pull-0 {
+ right: auto;
+ }
+ .col-lg-pull-1 {
+ right: 8.333333333333332%;
+ }
+ .col-lg-pull-2 {
+ right: 16.666666666666664%;
+ }
+ .col-lg-pull-3 {
+ right: 25%;
+ }
+ .col-lg-pull-4 {
+ right: 33.33333333333333%;
+ }
+ .col-lg-pull-5 {
+ right: 41.66666666666667%;
+ }
+ .col-lg-pull-6 {
+ right: 50%;
+ }
+ .col-lg-pull-7 {
+ right: 58.333333333333336%;
+ }
+ .col-lg-pull-8 {
+ right: 66.66666666666666%;
+ }
+ .col-lg-pull-9 {
+ right: 75%;
+ }
+ .col-lg-pull-10 {
+ right: 83.33333333333334%;
+ }
+ .col-lg-pull-11 {
+ right: 91.66666666666666%;
+ }
+ .col-lg-offset-0 {
+ margin-left: 0;
+ }
+ .col-lg-offset-1 {
+ margin-left: 8.333333333333332%;
+ }
+ .col-lg-offset-2 {
+ margin-left: 16.666666666666664%;
+ }
+ .col-lg-offset-3 {
+ margin-left: 25%;
+ }
+ .col-lg-offset-4 {
+ margin-left: 33.33333333333333%;
+ }
+ .col-lg-offset-5 {
+ margin-left: 41.66666666666667%;
+ }
+ .col-lg-offset-6 {
+ margin-left: 50%;
+ }
+ .col-lg-offset-7 {
+ margin-left: 58.333333333333336%;
+ }
+ .col-lg-offset-8 {
+ margin-left: 66.66666666666666%;
+ }
+ .col-lg-offset-9 {
+ margin-left: 75%;
+ }
+ .col-lg-offset-10 {
+ margin-left: 83.33333333333334%;
+ }
+ .col-lg-offset-11 {
+ margin-left: 91.66666666666666%;
+ }
+}
+
+table {
+ max-width: 100%;
+ background-color: transparent;
+}
+
+th {
+ text-align: left;
+}
+
+.table {
+ width: 100%;
+ margin-bottom: 20px;
+}
+
+.table thead > tr > th,
+.table tbody > tr > th,
+.table tfoot > tr > th,
+.table thead > tr > td,
+.table tbody > tr > td,
+.table tfoot > tr > td {
+ padding: 8px;
+ line-height: 1.428571429;
+ vertical-align: top;
+ border-top: 1px solid #dddddd;
+}
+
+.table thead > tr > th {
+ vertical-align: bottom;
+ border-bottom: 2px solid #dddddd;
+}
+
+.table caption + thead tr:first-child th,
+.table colgroup + thead tr:first-child th,
+.table thead:first-child tr:first-child th,
+.table caption + thead tr:first-child td,
+.table colgroup + thead tr:first-child td,
+.table thead:first-child tr:first-child td {
+ border-top: 0;
+}
+
+.table tbody + tbody {
+ border-top: 2px solid #dddddd;
+}
+
+.table .table {
+ background-color: #ffffff;
+}
+
+.table-condensed thead > tr > th,
+.table-condensed tbody > tr > th,
+.table-condensed tfoot > tr > th,
+.table-condensed thead > tr > td,
+.table-condensed tbody > tr > td,
+.table-condensed tfoot > tr > td {
+ padding: 5px;
+}
+
+.table-bordered {
+ border: 1px solid #dddddd;
+}
+
+.table-bordered > thead > tr > th,
+.table-bordered > tbody > tr > th,
+.table-bordered > tfoot > tr > th,
+.table-bordered > thead > tr > td,
+.table-bordered > tbody > tr > td,
+.table-bordered > tfoot > tr > td {
+ border: 1px solid #dddddd;
+}
+
+.table-bordered > thead > tr > th,
+.table-bordered > thead > tr > td {
+ border-bottom-width: 2px;
+}
+
+.table-striped > tbody > tr:nth-child(odd) > td,
+.table-striped > tbody > tr:nth-child(odd) > th {
+ background-color: #f9f9f9;
+}
+
+.table-hover > tbody > tr:hover > td,
+.table-hover > tbody > tr:hover > th {
+ background-color: #f5f5f5;
+}
+
+table col[class*="col-"] {
+ display: table-column;
+ float: none;
+}
+
+table td[class*="col-"],
+table th[class*="col-"] {
+ display: table-cell;
+ float: none;
+}
+
+.table > thead > tr > td.active,
+.table > tbody > tr > td.active,
+.table > tfoot > tr > td.active,
+.table > thead > tr > th.active,
+.table > tbody > tr > th.active,
+.table > tfoot > tr > th.active,
+.table > thead > tr.active > td,
+.table > tbody > tr.active > td,
+.table > tfoot > tr.active > td,
+.table > thead > tr.active > th,
+.table > tbody > tr.active > th,
+.table > tfoot > tr.active > th {
+ background-color: #f5f5f5;
+}
+
+.table > thead > tr > td.success,
+.table > tbody > tr > td.success,
+.table > tfoot > tr > td.success,
+.table > thead > tr > th.success,
+.table > tbody > tr > th.success,
+.table > tfoot > tr > th.success,
+.table > thead > tr.success > td,
+.table > tbody > tr.success > td,
+.table > tfoot > tr.success > td,
+.table > thead > tr.success > th,
+.table > tbody > tr.success > th,
+.table > tfoot > tr.success > th {
+ background-color: #dff0d8;
+ border-color: #d6e9c6;
+}
+
+.table-hover > tbody > tr > td.success:hover,
+.table-hover > tbody > tr > th.success:hover,
+.table-hover > tbody > tr.success:hover > td {
+ background-color: #d0e9c6;
+ border-color: #c9e2b3;
+}
+
+.table > thead > tr > td.danger,
+.table > tbody > tr > td.danger,
+.table > tfoot > tr > td.danger,
+.table > thead > tr > th.danger,
+.table > tbody > tr > th.danger,
+.table > tfoot > tr > th.danger,
+.table > thead > tr.danger > td,
+.table > tbody > tr.danger > td,
+.table > tfoot > tr.danger > td,
+.table > thead > tr.danger > th,
+.table > tbody > tr.danger > th,
+.table > tfoot > tr.danger > th {
+ background-color: #f2dede;
+ border-color: #eed3d7;
+}
+
+.table-hover > tbody > tr > td.danger:hover,
+.table-hover > tbody > tr > th.danger:hover,
+.table-hover > tbody > tr.danger:hover > td {
+ background-color: #ebcccc;
+ border-color: #e6c1c7;
+}
+
+.table > thead > tr > td.warning,
+.table > tbody > tr > td.warning,
+.table > tfoot > tr > td.warning,
+.table > thead > tr > th.warning,
+.table > tbody > tr > th.warning,
+.table > tfoot > tr > th.warning,
+.table > thead > tr.warning > td,
+.table > tbody > tr.warning > td,
+.table > tfoot > tr.warning > td,
+.table > thead > tr.warning > th,
+.table > tbody > tr.warning > th,
+.table > tfoot > tr.warning > th {
+ background-color: #fcf8e3;
+ border-color: #fbeed5;
+}
+
+.table-hover > tbody > tr > td.warning:hover,
+.table-hover > tbody > tr > th.warning:hover,
+.table-hover > tbody > tr.warning:hover > td {
+ background-color: #faf2cc;
+ border-color: #f8e5be;
+}
+
+@media (max-width: 768px) {
+ .table-responsive {
+ width: 100%;
+ margin-bottom: 15px;
+ overflow-x: scroll;
+ overflow-y: hidden;
+ border: 1px solid #dddddd;
+ }
+ .table-responsive > .table {
+ margin-bottom: 0;
+ background-color: #fff;
+ }
+ .table-responsive > .table > thead > tr > th,
+ .table-responsive > .table > tbody > tr > th,
+ .table-responsive > .table > tfoot > tr > th,
+ .table-responsive > .table > thead > tr > td,
+ .table-responsive > .table > tbody > tr > td,
+ .table-responsive > .table > tfoot > tr > td {
+ white-space: nowrap;
+ }
+ .table-responsive > .table-bordered {
+ border: 0;
+ }
+ .table-responsive > .table-bordered > thead > tr > th:first-child,
+ .table-responsive > .table-bordered > tbody > tr > th:first-child,
+ .table-responsive > .table-bordered > tfoot > tr > th:first-child,
+ .table-responsive > .table-bordered > thead > tr > td:first-child,
+ .table-responsive > .table-bordered > tbody > tr > td:first-child,
+ .table-responsive > .table-bordered > tfoot > tr > td:first-child {
+ border-left: 0;
+ }
+ .table-responsive > .table-bordered > thead > tr > th:last-child,
+ .table-responsive > .table-bordered > tbody > tr > th:last-child,
+ .table-responsive > .table-bordered > tfoot > tr > th:last-child,
+ .table-responsive > .table-bordered > thead > tr > td:last-child,
+ .table-responsive > .table-bordered > tbody > tr > td:last-child,
+ .table-responsive > .table-bordered > tfoot > tr > td:last-child {
+ border-right: 0;
+ }
+ .table-responsive > .table-bordered > thead > tr:last-child > th,
+ .table-responsive > .table-bordered > tbody > tr:last-child > th,
+ .table-responsive > .table-bordered > tfoot > tr:last-child > th,
+ .table-responsive > .table-bordered > thead > tr:last-child > td,
+ .table-responsive > .table-bordered > tbody > tr:last-child > td,
+ .table-responsive > .table-bordered > tfoot > tr:last-child > td {
+ border-bottom: 0;
+ }
+}
+
+fieldset {
+ padding: 0;
+ margin: 0;
+ border: 0;
+}
+
+legend {
+ display: block;
+ width: 100%;
+ padding: 0;
+ margin-bottom: 20px;
+ font-size: 21px;
+ line-height: inherit;
+ color: #333333;
+ border: 0;
+ border-bottom: 1px solid #e5e5e5;
+}
+
+label {
+ display: inline-block;
+ margin-bottom: 5px;
+ font-weight: bold;
+}
+
+input[type="search"] {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+}
+
+input[type="radio"],
+input[type="checkbox"] {
+ margin: 4px 0 0;
+ margin-top: 1px \9;
+ /* IE8-9 */
+
+ line-height: normal;
+}
+
+input[type="file"] {
+ display: block;
+}
+
+select[multiple],
+select[size] {
+ height: auto;
+}
+
+select optgroup {
+ font-family: inherit;
+ font-size: inherit;
+ font-style: inherit;
+}
+
+input[type="file"]:focus,
+input[type="radio"]:focus,
+input[type="checkbox"]:focus {
+ outline: thin dotted #333;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px;
+}
+
+input[type="number"]::-webkit-outer-spin-button,
+input[type="number"]::-webkit-inner-spin-button {
+ height: auto;
+}
+
+.form-control:-moz-placeholder {
+ color: #999999;
+}
+
+.form-control::-moz-placeholder {
+ color: #999999;
+}
+
+.form-control:-ms-input-placeholder {
+ color: #999999;
+}
+
+.form-control::-webkit-input-placeholder {
+ color: #999999;
+}
+
+.form-control {
+ display: block;
+ width: 100%;
+ height: 34px;
+ padding: 6px 12px;
+ font-size: 14px;
+ line-height: 1.428571429;
+ color: #555555;
+ vertical-align: middle;
+ background-color: #ffffff;
+ border: 1px solid #cccccc;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ -webkit-transition: border-color ease-in-out 0.15s, box-shadow ease-in-out 0.15s;
+ transition: border-color ease-in-out 0.15s, box-shadow ease-in-out 0.15s;
+}
+
+.form-control:focus {
+ border-color: #66afe9;
+ outline: 0;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(102, 175, 233, 0.6);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 8px rgba(102, 175, 233, 0.6);
+}
+
+.form-control[disabled],
+.form-control[readonly],
+fieldset[disabled] .form-control {
+ cursor: not-allowed;
+ background-color: #eeeeee;
+}
+
+textarea.form-control {
+ height: auto;
+}
+
+.form-group {
+ margin-bottom: 15px;
+}
+
+.radio,
+.checkbox {
+ display: block;
+ min-height: 20px;
+ padding-left: 20px;
+ margin-top: 10px;
+ margin-bottom: 10px;
+ vertical-align: middle;
+}
+
+.radio label,
+.checkbox label {
+ display: inline;
+ margin-bottom: 0;
+ font-weight: normal;
+ cursor: pointer;
+}
+
+.radio input[type="radio"],
+.radio-inline input[type="radio"],
+.checkbox input[type="checkbox"],
+.checkbox-inline input[type="checkbox"] {
+ float: left;
+ margin-left: -20px;
+}
+
+.radio + .radio,
+.checkbox + .checkbox {
+ margin-top: -5px;
+}
+
+.radio-inline,
+.checkbox-inline {
+ display: inline-block;
+ padding-left: 20px;
+ margin-bottom: 0;
+ font-weight: normal;
+ vertical-align: middle;
+ cursor: pointer;
+}
+
+.radio-inline + .radio-inline,
+.checkbox-inline + .checkbox-inline {
+ margin-top: 0;
+ margin-left: 10px;
+}
+
+input[type="radio"][disabled],
+input[type="checkbox"][disabled],
+.radio[disabled],
+.radio-inline[disabled],
+.checkbox[disabled],
+.checkbox-inline[disabled],
+fieldset[disabled] input[type="radio"],
+fieldset[disabled] input[type="checkbox"],
+fieldset[disabled] .radio,
+fieldset[disabled] .radio-inline,
+fieldset[disabled] .checkbox,
+fieldset[disabled] .checkbox-inline {
+ cursor: not-allowed;
+}
+
+.input-sm {
+ height: 30px;
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+
+select.input-sm {
+ height: 30px;
+ line-height: 30px;
+}
+
+textarea.input-sm {
+ height: auto;
+}
+
+.input-lg {
+ height: 45px;
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+
+select.input-lg {
+ height: 45px;
+ line-height: 45px;
+}
+
+textarea.input-lg {
+ height: auto;
+}
+
+.has-warning .help-block,
+.has-warning .control-label {
+ color: #c09853;
+}
+
+.has-warning .form-control {
+ border-color: #c09853;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+}
+
+.has-warning .form-control:focus {
+ border-color: #a47e3c;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #dbc59e;
+}
+
+.has-warning .input-group-addon {
+ color: #c09853;
+ background-color: #fcf8e3;
+ border-color: #c09853;
+}
+
+.has-error .help-block,
+.has-error .control-label {
+ color: #b94a48;
+}
+
+.has-error .form-control {
+ border-color: #b94a48;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+}
+
+.has-error .form-control:focus {
+ border-color: #953b39;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #d59392;
+}
+
+.has-error .input-group-addon {
+ color: #b94a48;
+ background-color: #f2dede;
+ border-color: #b94a48;
+}
+
+.has-success .help-block,
+.has-success .control-label {
+ color: #468847;
+}
+
+.has-success .form-control {
+ border-color: #468847;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075);
+}
+
+.has-success .form-control:focus {
+ border-color: #356635;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.075), 0 0 6px #7aba7b;
+}
+
+.has-success .input-group-addon {
+ color: #468847;
+ background-color: #dff0d8;
+ border-color: #468847;
+}
+
+.form-control-static {
+ padding-top: 7px;
+ margin-bottom: 0;
+}
+
+.help-block {
+ display: block;
+ margin-top: 5px;
+ margin-bottom: 10px;
+ color: #737373;
+}
+
+@media (min-width: 768px) {
+ .form-inline .form-group {
+ display: inline-block;
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .form-inline .form-control {
+ display: inline-block;
+ }
+ .form-inline .radio,
+ .form-inline .checkbox {
+ display: inline-block;
+ padding-left: 0;
+ margin-top: 0;
+ margin-bottom: 0;
+ }
+ .form-inline .radio input[type="radio"],
+ .form-inline .checkbox input[type="checkbox"] {
+ float: none;
+ margin-left: 0;
+ }
+}
+
+.form-horizontal .control-label,
+.form-horizontal .radio,
+.form-horizontal .checkbox,
+.form-horizontal .radio-inline,
+.form-horizontal .checkbox-inline {
+ padding-top: 7px;
+ margin-top: 0;
+ margin-bottom: 0;
+}
+
+.form-horizontal .form-group {
+ margin-right: -15px;
+ margin-left: -15px;
+}
+
+.form-horizontal .form-group:before,
+.form-horizontal .form-group:after {
+ display: table;
+ content: " ";
+}
+
+.form-horizontal .form-group:after {
+ clear: both;
+}
+
+.form-horizontal .form-group:before,
+.form-horizontal .form-group:after {
+ display: table;
+ content: " ";
+}
+
+.form-horizontal .form-group:after {
+ clear: both;
+}
+
+@media (min-width: 768px) {
+ .form-horizontal .control-label {
+ text-align: right;
+ }
+}
+
+.btn {
+ display: inline-block;
+ padding: 6px 12px;
+ margin-bottom: 0;
+ font-size: 14px;
+ font-weight: normal;
+ line-height: 1.428571429;
+ text-align: center;
+ white-space: nowrap;
+ vertical-align: middle;
+ cursor: pointer;
+ border: 1px solid transparent;
+ border-radius: 4px;
+ -webkit-user-select: none;
+ -moz-user-select: none;
+ -ms-user-select: none;
+ -o-user-select: none;
+ user-select: none;
+}
+
+.btn:focus {
+ outline: thin dotted #333;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px;
+}
+
+.btn:hover,
+.btn:focus {
+ color: #333333;
+ text-decoration: none;
+}
+
+.btn:active,
+.btn.active {
+ background-image: none;
+ outline: 0;
+ -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
+ box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
+}
+
+.btn.disabled,
+.btn[disabled],
+fieldset[disabled] .btn {
+ pointer-events: none;
+ cursor: not-allowed;
+ opacity: 0.65;
+ filter: alpha(opacity=65);
+ -webkit-box-shadow: none;
+ box-shadow: none;
+}
+
+.btn-default {
+ color: #333333;
+ background-color: #ffffff;
+ border-color: #cccccc;
+}
+
+.btn-default:hover,
+.btn-default:focus,
+.btn-default:active,
+.btn-default.active,
+.open .dropdown-toggle.btn-default {
+ color: #333333;
+ background-color: #ebebeb;
+ border-color: #adadad;
+}
+
+.btn-default:active,
+.btn-default.active,
+.open .dropdown-toggle.btn-default {
+ background-image: none;
+}
+
+.btn-default.disabled,
+.btn-default[disabled],
+fieldset[disabled] .btn-default,
+.btn-default.disabled:hover,
+.btn-default[disabled]:hover,
+fieldset[disabled] .btn-default:hover,
+.btn-default.disabled:focus,
+.btn-default[disabled]:focus,
+fieldset[disabled] .btn-default:focus,
+.btn-default.disabled:active,
+.btn-default[disabled]:active,
+fieldset[disabled] .btn-default:active,
+.btn-default.disabled.active,
+.btn-default[disabled].active,
+fieldset[disabled] .btn-default.active {
+ background-color: #ffffff;
+ border-color: #cccccc;
+}
+
+.btn-primary {
+ color: #ffffff;
+ background-color: #428bca;
+ border-color: #357ebd;
+}
+
+.btn-primary:hover,
+.btn-primary:focus,
+.btn-primary:active,
+.btn-primary.active,
+.open .dropdown-toggle.btn-primary {
+ color: #ffffff;
+ background-color: #3276b1;
+ border-color: #285e8e;
+}
+
+.btn-primary:active,
+.btn-primary.active,
+.open .dropdown-toggle.btn-primary {
+ background-image: none;
+}
+
+.btn-primary.disabled,
+.btn-primary[disabled],
+fieldset[disabled] .btn-primary,
+.btn-primary.disabled:hover,
+.btn-primary[disabled]:hover,
+fieldset[disabled] .btn-primary:hover,
+.btn-primary.disabled:focus,
+.btn-primary[disabled]:focus,
+fieldset[disabled] .btn-primary:focus,
+.btn-primary.disabled:active,
+.btn-primary[disabled]:active,
+fieldset[disabled] .btn-primary:active,
+.btn-primary.disabled.active,
+.btn-primary[disabled].active,
+fieldset[disabled] .btn-primary.active {
+ background-color: #428bca;
+ border-color: #357ebd;
+}
+
+.btn-warning {
+ color: #ffffff;
+ background-color: #f0ad4e;
+ border-color: #eea236;
+}
+
+.btn-warning:hover,
+.btn-warning:focus,
+.btn-warning:active,
+.btn-warning.active,
+.open .dropdown-toggle.btn-warning {
+ color: #ffffff;
+ background-color: #ed9c28;
+ border-color: #d58512;
+}
+
+.btn-warning:active,
+.btn-warning.active,
+.open .dropdown-toggle.btn-warning {
+ background-image: none;
+}
+
+.btn-warning.disabled,
+.btn-warning[disabled],
+fieldset[disabled] .btn-warning,
+.btn-warning.disabled:hover,
+.btn-warning[disabled]:hover,
+fieldset[disabled] .btn-warning:hover,
+.btn-warning.disabled:focus,
+.btn-warning[disabled]:focus,
+fieldset[disabled] .btn-warning:focus,
+.btn-warning.disabled:active,
+.btn-warning[disabled]:active,
+fieldset[disabled] .btn-warning:active,
+.btn-warning.disabled.active,
+.btn-warning[disabled].active,
+fieldset[disabled] .btn-warning.active {
+ background-color: #f0ad4e;
+ border-color: #eea236;
+}
+
+.btn-danger {
+ color: #ffffff;
+ background-color: #d9534f;
+ border-color: #d43f3a;
+}
+
+.btn-danger:hover,
+.btn-danger:focus,
+.btn-danger:active,
+.btn-danger.active,
+.open .dropdown-toggle.btn-danger {
+ color: #ffffff;
+ background-color: #d2322d;
+ border-color: #ac2925;
+}
+
+.btn-danger:active,
+.btn-danger.active,
+.open .dropdown-toggle.btn-danger {
+ background-image: none;
+}
+
+.btn-danger.disabled,
+.btn-danger[disabled],
+fieldset[disabled] .btn-danger,
+.btn-danger.disabled:hover,
+.btn-danger[disabled]:hover,
+fieldset[disabled] .btn-danger:hover,
+.btn-danger.disabled:focus,
+.btn-danger[disabled]:focus,
+fieldset[disabled] .btn-danger:focus,
+.btn-danger.disabled:active,
+.btn-danger[disabled]:active,
+fieldset[disabled] .btn-danger:active,
+.btn-danger.disabled.active,
+.btn-danger[disabled].active,
+fieldset[disabled] .btn-danger.active {
+ background-color: #d9534f;
+ border-color: #d43f3a;
+}
+
+.btn-success {
+ color: #ffffff;
+ background-color: #5cb85c;
+ border-color: #4cae4c;
+}
+
+.btn-success:hover,
+.btn-success:focus,
+.btn-success:active,
+.btn-success.active,
+.open .dropdown-toggle.btn-success {
+ color: #ffffff;
+ background-color: #47a447;
+ border-color: #398439;
+}
+
+.btn-success:active,
+.btn-success.active,
+.open .dropdown-toggle.btn-success {
+ background-image: none;
+}
+
+.btn-success.disabled,
+.btn-success[disabled],
+fieldset[disabled] .btn-success,
+.btn-success.disabled:hover,
+.btn-success[disabled]:hover,
+fieldset[disabled] .btn-success:hover,
+.btn-success.disabled:focus,
+.btn-success[disabled]:focus,
+fieldset[disabled] .btn-success:focus,
+.btn-success.disabled:active,
+.btn-success[disabled]:active,
+fieldset[disabled] .btn-success:active,
+.btn-success.disabled.active,
+.btn-success[disabled].active,
+fieldset[disabled] .btn-success.active {
+ background-color: #5cb85c;
+ border-color: #4cae4c;
+}
+
+.btn-info {
+ color: #ffffff;
+ background-color: #5bc0de;
+ border-color: #46b8da;
+}
+
+.btn-info:hover,
+.btn-info:focus,
+.btn-info:active,
+.btn-info.active,
+.open .dropdown-toggle.btn-info {
+ color: #ffffff;
+ background-color: #39b3d7;
+ border-color: #269abc;
+}
+
+.btn-info:active,
+.btn-info.active,
+.open .dropdown-toggle.btn-info {
+ background-image: none;
+}
+
+.btn-info.disabled,
+.btn-info[disabled],
+fieldset[disabled] .btn-info,
+.btn-info.disabled:hover,
+.btn-info[disabled]:hover,
+fieldset[disabled] .btn-info:hover,
+.btn-info.disabled:focus,
+.btn-info[disabled]:focus,
+fieldset[disabled] .btn-info:focus,
+.btn-info.disabled:active,
+.btn-info[disabled]:active,
+fieldset[disabled] .btn-info:active,
+.btn-info.disabled.active,
+.btn-info[disabled].active,
+fieldset[disabled] .btn-info.active {
+ background-color: #5bc0de;
+ border-color: #46b8da;
+}
+
+.btn-link {
+ font-weight: normal;
+ color: #428bca;
+ cursor: pointer;
+ border-radius: 0;
+}
+
+.btn-link,
+.btn-link:active,
+.btn-link[disabled],
+fieldset[disabled] .btn-link {
+ background-color: transparent;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+}
+
+.btn-link,
+.btn-link:hover,
+.btn-link:focus,
+.btn-link:active {
+ border-color: transparent;
+}
+
+.btn-link:hover,
+.btn-link:focus {
+ color: #2a6496;
+ text-decoration: underline;
+ background-color: transparent;
+}
+
+.btn-link[disabled]:hover,
+fieldset[disabled] .btn-link:hover,
+.btn-link[disabled]:focus,
+fieldset[disabled] .btn-link:focus {
+ color: #999999;
+ text-decoration: none;
+}
+
+.btn-lg {
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+
+.btn-sm,
+.btn-xs {
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+
+.btn-xs {
+ padding: 1px 5px;
+}
+
+.btn-block {
+ display: block;
+ width: 100%;
+ padding-right: 0;
+ padding-left: 0;
+}
+
+.btn-block + .btn-block {
+ margin-top: 5px;
+}
+
+input[type="submit"].btn-block,
+input[type="reset"].btn-block,
+input[type="button"].btn-block {
+ width: 100%;
+}
+
+.fade {
+ opacity: 0;
+ -webkit-transition: opacity 0.15s linear;
+ transition: opacity 0.15s linear;
+}
+
+.fade.in {
+ opacity: 1;
+}
+
+.collapse {
+ display: none;
+}
+
+.collapse.in {
+ display: block;
+}
+
+.collapsing {
+ position: relative;
+ height: 0;
+ overflow: hidden;
+ -webkit-transition: height 0.35s ease;
+ transition: height 0.35s ease;
+}
+
+@font-face {
+ font-family: 'Glyphicons Halflings';
+ src: url('../fonts/glyphicons-halflings-regular.eot');
+ src: url('../fonts/glyphicons-halflings-regular.eot?#iefix') format('embedded-opentype'), url('../fonts/glyphicons-halflings-regular.woff') format('woff'), url('../fonts/glyphicons-halflings-regular.ttf') format('truetype'), url('../fonts/glyphicons-halflings-regular.svg#glyphicons-halflingsregular') format('svg');
+}
+
+.glyphicon {
+ position: relative;
+ top: 1px;
+ display: inline-block;
+ font-family: 'Glyphicons Halflings';
+ -webkit-font-smoothing: antialiased;
+ font-style: normal;
+ font-weight: normal;
+ line-height: 1;
+}
+
+.glyphicon-asterisk:before {
+ content: "\2a";
+}
+
+.glyphicon-plus:before {
+ content: "\2b";
+}
+
+.glyphicon-euro:before {
+ content: "\20ac";
+}
+
+.glyphicon-minus:before {
+ content: "\2212";
+}
+
+.glyphicon-cloud:before {
+ content: "\2601";
+}
+
+.glyphicon-envelope:before {
+ content: "\2709";
+}
+
+.glyphicon-pencil:before {
+ content: "\270f";
+}
+
+.glyphicon-glass:before {
+ content: "\e001";
+}
+
+.glyphicon-music:before {
+ content: "\e002";
+}
+
+.glyphicon-search:before {
+ content: "\e003";
+}
+
+.glyphicon-heart:before {
+ content: "\e005";
+}
+
+.glyphicon-star:before {
+ content: "\e006";
+}
+
+.glyphicon-star-empty:before {
+ content: "\e007";
+}
+
+.glyphicon-user:before {
+ content: "\e008";
+}
+
+.glyphicon-film:before {
+ content: "\e009";
+}
+
+.glyphicon-th-large:before {
+ content: "\e010";
+}
+
+.glyphicon-th:before {
+ content: "\e011";
+}
+
+.glyphicon-th-list:before {
+ content: "\e012";
+}
+
+.glyphicon-ok:before {
+ content: "\e013";
+}
+
+.glyphicon-remove:before {
+ content: "\e014";
+}
+
+.glyphicon-zoom-in:before {
+ content: "\e015";
+}
+
+.glyphicon-zoom-out:before {
+ content: "\e016";
+}
+
+.glyphicon-off:before {
+ content: "\e017";
+}
+
+.glyphicon-signal:before {
+ content: "\e018";
+}
+
+.glyphicon-cog:before {
+ content: "\e019";
+}
+
+.glyphicon-trash:before {
+ content: "\e020";
+}
+
+.glyphicon-home:before {
+ content: "\e021";
+}
+
+.glyphicon-file:before {
+ content: "\e022";
+}
+
+.glyphicon-time:before {
+ content: "\e023";
+}
+
+.glyphicon-road:before {
+ content: "\e024";
+}
+
+.glyphicon-download-alt:before {
+ content: "\e025";
+}
+
+.glyphicon-download:before {
+ content: "\e026";
+}
+
+.glyphicon-upload:before {
+ content: "\e027";
+}
+
+.glyphicon-inbox:before {
+ content: "\e028";
+}
+
+.glyphicon-play-circle:before {
+ content: "\e029";
+}
+
+.glyphicon-repeat:before {
+ content: "\e030";
+}
+
+.glyphicon-refresh:before {
+ content: "\e031";
+}
+
+.glyphicon-list-alt:before {
+ content: "\e032";
+}
+
+.glyphicon-flag:before {
+ content: "\e034";
+}
+
+.glyphicon-headphones:before {
+ content: "\e035";
+}
+
+.glyphicon-volume-off:before {
+ content: "\e036";
+}
+
+.glyphicon-volume-down:before {
+ content: "\e037";
+}
+
+.glyphicon-volume-up:before {
+ content: "\e038";
+}
+
+.glyphicon-qrcode:before {
+ content: "\e039";
+}
+
+.glyphicon-barcode:before {
+ content: "\e040";
+}
+
+.glyphicon-tag:before {
+ content: "\e041";
+}
+
+.glyphicon-tags:before {
+ content: "\e042";
+}
+
+.glyphicon-book:before {
+ content: "\e043";
+}
+
+.glyphicon-print:before {
+ content: "\e045";
+}
+
+.glyphicon-font:before {
+ content: "\e047";
+}
+
+.glyphicon-bold:before {
+ content: "\e048";
+}
+
+.glyphicon-italic:before {
+ content: "\e049";
+}
+
+.glyphicon-text-height:before {
+ content: "\e050";
+}
+
+.glyphicon-text-width:before {
+ content: "\e051";
+}
+
+.glyphicon-align-left:before {
+ content: "\e052";
+}
+
+.glyphicon-align-center:before {
+ content: "\e053";
+}
+
+.glyphicon-align-right:before {
+ content: "\e054";
+}
+
+.glyphicon-align-justify:before {
+ content: "\e055";
+}
+
+.glyphicon-list:before {
+ content: "\e056";
+}
+
+.glyphicon-indent-left:before {
+ content: "\e057";
+}
+
+.glyphicon-indent-right:before {
+ content: "\e058";
+}
+
+.glyphicon-facetime-video:before {
+ content: "\e059";
+}
+
+.glyphicon-picture:before {
+ content: "\e060";
+}
+
+.glyphicon-map-marker:before {
+ content: "\e062";
+}
+
+.glyphicon-adjust:before {
+ content: "\e063";
+}
+
+.glyphicon-tint:before {
+ content: "\e064";
+}
+
+.glyphicon-edit:before {
+ content: "\e065";
+}
+
+.glyphicon-share:before {
+ content: "\e066";
+}
+
+.glyphicon-check:before {
+ content: "\e067";
+}
+
+.glyphicon-move:before {
+ content: "\e068";
+}
+
+.glyphicon-step-backward:before {
+ content: "\e069";
+}
+
+.glyphicon-fast-backward:before {
+ content: "\e070";
+}
+
+.glyphicon-backward:before {
+ content: "\e071";
+}
+
+.glyphicon-play:before {
+ content: "\e072";
+}
+
+.glyphicon-pause:before {
+ content: "\e073";
+}
+
+.glyphicon-stop:before {
+ content: "\e074";
+}
+
+.glyphicon-forward:before {
+ content: "\e075";
+}
+
+.glyphicon-fast-forward:before {
+ content: "\e076";
+}
+
+.glyphicon-step-forward:before {
+ content: "\e077";
+}
+
+.glyphicon-eject:before {
+ content: "\e078";
+}
+
+.glyphicon-chevron-left:before {
+ content: "\e079";
+}
+
+.glyphicon-chevron-right:before {
+ content: "\e080";
+}
+
+.glyphicon-plus-sign:before {
+ content: "\e081";
+}
+
+.glyphicon-minus-sign:before {
+ content: "\e082";
+}
+
+.glyphicon-remove-sign:before {
+ content: "\e083";
+}
+
+.glyphicon-ok-sign:before {
+ content: "\e084";
+}
+
+.glyphicon-question-sign:before {
+ content: "\e085";
+}
+
+.glyphicon-info-sign:before {
+ content: "\e086";
+}
+
+.glyphicon-screenshot:before {
+ content: "\e087";
+}
+
+.glyphicon-remove-circle:before {
+ content: "\e088";
+}
+
+.glyphicon-ok-circle:before {
+ content: "\e089";
+}
+
+.glyphicon-ban-circle:before {
+ content: "\e090";
+}
+
+.glyphicon-arrow-left:before {
+ content: "\e091";
+}
+
+.glyphicon-arrow-right:before {
+ content: "\e092";
+}
+
+.glyphicon-arrow-up:before {
+ content: "\e093";
+}
+
+.glyphicon-arrow-down:before {
+ content: "\e094";
+}
+
+.glyphicon-share-alt:before {
+ content: "\e095";
+}
+
+.glyphicon-resize-full:before {
+ content: "\e096";
+}
+
+.glyphicon-resize-small:before {
+ content: "\e097";
+}
+
+.glyphicon-exclamation-sign:before {
+ content: "\e101";
+}
+
+.glyphicon-gift:before {
+ content: "\e102";
+}
+
+.glyphicon-leaf:before {
+ content: "\e103";
+}
+
+.glyphicon-eye-open:before {
+ content: "\e105";
+}
+
+.glyphicon-eye-close:before {
+ content: "\e106";
+}
+
+.glyphicon-warning-sign:before {
+ content: "\e107";
+}
+
+.glyphicon-plane:before {
+ content: "\e108";
+}
+
+.glyphicon-random:before {
+ content: "\e110";
+}
+
+.glyphicon-comment:before {
+ content: "\e111";
+}
+
+.glyphicon-magnet:before {
+ content: "\e112";
+}
+
+.glyphicon-chevron-up:before {
+ content: "\e113";
+}
+
+.glyphicon-chevron-down:before {
+ content: "\e114";
+}
+
+.glyphicon-retweet:before {
+ content: "\e115";
+}
+
+.glyphicon-shopping-cart:before {
+ content: "\e116";
+}
+
+.glyphicon-folder-close:before {
+ content: "\e117";
+}
+
+.glyphicon-folder-open:before {
+ content: "\e118";
+}
+
+.glyphicon-resize-vertical:before {
+ content: "\e119";
+}
+
+.glyphicon-resize-horizontal:before {
+ content: "\e120";
+}
+
+.glyphicon-hdd:before {
+ content: "\e121";
+}
+
+.glyphicon-bullhorn:before {
+ content: "\e122";
+}
+
+.glyphicon-certificate:before {
+ content: "\e124";
+}
+
+.glyphicon-thumbs-up:before {
+ content: "\e125";
+}
+
+.glyphicon-thumbs-down:before {
+ content: "\e126";
+}
+
+.glyphicon-hand-right:before {
+ content: "\e127";
+}
+
+.glyphicon-hand-left:before {
+ content: "\e128";
+}
+
+.glyphicon-hand-up:before {
+ content: "\e129";
+}
+
+.glyphicon-hand-down:before {
+ content: "\e130";
+}
+
+.glyphicon-circle-arrow-right:before {
+ content: "\e131";
+}
+
+.glyphicon-circle-arrow-left:before {
+ content: "\e132";
+}
+
+.glyphicon-circle-arrow-up:before {
+ content: "\e133";
+}
+
+.glyphicon-circle-arrow-down:before {
+ content: "\e134";
+}
+
+.glyphicon-globe:before {
+ content: "\e135";
+}
+
+.glyphicon-tasks:before {
+ content: "\e137";
+}
+
+.glyphicon-filter:before {
+ content: "\e138";
+}
+
+.glyphicon-fullscreen:before {
+ content: "\e140";
+}
+
+.glyphicon-dashboard:before {
+ content: "\e141";
+}
+
+.glyphicon-heart-empty:before {
+ content: "\e143";
+}
+
+.glyphicon-link:before {
+ content: "\e144";
+}
+
+.glyphicon-phone:before {
+ content: "\e145";
+}
+
+.glyphicon-usd:before {
+ content: "\e148";
+}
+
+.glyphicon-gbp:before {
+ content: "\e149";
+}
+
+.glyphicon-sort:before {
+ content: "\e150";
+}
+
+.glyphicon-sort-by-alphabet:before {
+ content: "\e151";
+}
+
+.glyphicon-sort-by-alphabet-alt:before {
+ content: "\e152";
+}
+
+.glyphicon-sort-by-order:before {
+ content: "\e153";
+}
+
+.glyphicon-sort-by-order-alt:before {
+ content: "\e154";
+}
+
+.glyphicon-sort-by-attributes:before {
+ content: "\e155";
+}
+
+.glyphicon-sort-by-attributes-alt:before {
+ content: "\e156";
+}
+
+.glyphicon-unchecked:before {
+ content: "\e157";
+}
+
+.glyphicon-expand:before {
+ content: "\e158";
+}
+
+.glyphicon-collapse-down:before {
+ content: "\e159";
+}
+
+.glyphicon-collapse-up:before {
+ content: "\e160";
+}
+
+.glyphicon-log-in:before {
+ content: "\e161";
+}
+
+.glyphicon-flash:before {
+ content: "\e162";
+}
+
+.glyphicon-log-out:before {
+ content: "\e163";
+}
+
+.glyphicon-new-window:before {
+ content: "\e164";
+}
+
+.glyphicon-record:before {
+ content: "\e165";
+}
+
+.glyphicon-save:before {
+ content: "\e166";
+}
+
+.glyphicon-open:before {
+ content: "\e167";
+}
+
+.glyphicon-saved:before {
+ content: "\e168";
+}
+
+.glyphicon-import:before {
+ content: "\e169";
+}
+
+.glyphicon-export:before {
+ content: "\e170";
+}
+
+.glyphicon-send:before {
+ content: "\e171";
+}
+
+.glyphicon-floppy-disk:before {
+ content: "\e172";
+}
+
+.glyphicon-floppy-saved:before {
+ content: "\e173";
+}
+
+.glyphicon-floppy-remove:before {
+ content: "\e174";
+}
+
+.glyphicon-floppy-save:before {
+ content: "\e175";
+}
+
+.glyphicon-floppy-open:before {
+ content: "\e176";
+}
+
+.glyphicon-credit-card:before {
+ content: "\e177";
+}
+
+.glyphicon-transfer:before {
+ content: "\e178";
+}
+
+.glyphicon-cutlery:before {
+ content: "\e179";
+}
+
+.glyphicon-header:before {
+ content: "\e180";
+}
+
+.glyphicon-compressed:before {
+ content: "\e181";
+}
+
+.glyphicon-earphone:before {
+ content: "\e182";
+}
+
+.glyphicon-phone-alt:before {
+ content: "\e183";
+}
+
+.glyphicon-tower:before {
+ content: "\e184";
+}
+
+.glyphicon-stats:before {
+ content: "\e185";
+}
+
+.glyphicon-sd-video:before {
+ content: "\e186";
+}
+
+.glyphicon-hd-video:before {
+ content: "\e187";
+}
+
+.glyphicon-subtitles:before {
+ content: "\e188";
+}
+
+.glyphicon-sound-stereo:before {
+ content: "\e189";
+}
+
+.glyphicon-sound-dolby:before {
+ content: "\e190";
+}
+
+.glyphicon-sound-5-1:before {
+ content: "\e191";
+}
+
+.glyphicon-sound-6-1:before {
+ content: "\e192";
+}
+
+.glyphicon-sound-7-1:before {
+ content: "\e193";
+}
+
+.glyphicon-copyright-mark:before {
+ content: "\e194";
+}
+
+.glyphicon-registration-mark:before {
+ content: "\e195";
+}
+
+.glyphicon-cloud-download:before {
+ content: "\e197";
+}
+
+.glyphicon-cloud-upload:before {
+ content: "\e198";
+}
+
+.glyphicon-tree-conifer:before {
+ content: "\e199";
+}
+
+.glyphicon-tree-deciduous:before {
+ content: "\e200";
+}
+
+.glyphicon-briefcase:before {
+ content: "\1f4bc";
+}
+
+.glyphicon-calendar:before {
+ content: "\1f4c5";
+}
+
+.glyphicon-pushpin:before {
+ content: "\1f4cc";
+}
+
+.glyphicon-paperclip:before {
+ content: "\1f4ce";
+}
+
+.glyphicon-camera:before {
+ content: "\1f4f7";
+}
+
+.glyphicon-lock:before {
+ content: "\1f512";
+}
+
+.glyphicon-bell:before {
+ content: "\1f514";
+}
+
+.glyphicon-bookmark:before {
+ content: "\1f516";
+}
+
+.glyphicon-fire:before {
+ content: "\1f525";
+}
+
+.glyphicon-wrench:before {
+ content: "\1f527";
+}
+
+.caret {
+ display: inline-block;
+ width: 0;
+ height: 0;
+ margin-left: 2px;
+ vertical-align: middle;
+ border-top: 4px solid #000000;
+ border-right: 4px solid transparent;
+ border-bottom: 0 dotted;
+ border-left: 4px solid transparent;
+ content: "";
+}
+
+.dropdown {
+ position: relative;
+}
+
+.dropdown-toggle:focus {
+ outline: 0;
+}
+
+.dropdown-menu {
+ position: absolute;
+ top: 100%;
+ left: 0;
+ z-index: 1000;
+ display: none;
+ float: left;
+ min-width: 160px;
+ padding: 5px 0;
+ margin: 2px 0 0;
+ font-size: 14px;
+ list-style: none;
+ background-color: #ffffff;
+ border: 1px solid #cccccc;
+ border: 1px solid rgba(0, 0, 0, 0.15);
+ border-radius: 4px;
+ -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175);
+ box-shadow: 0 6px 12px rgba(0, 0, 0, 0.175);
+ background-clip: padding-box;
+}
+
+.dropdown-menu.pull-right {
+ right: 0;
+ left: auto;
+}
+
+.dropdown-menu .divider {
+ height: 1px;
+ margin: 9px 0;
+ overflow: hidden;
+ background-color: #e5e5e5;
+}
+
+.dropdown-menu > li > a {
+ display: block;
+ padding: 3px 20px;
+ clear: both;
+ font-weight: normal;
+ line-height: 1.428571429;
+ color: #333333;
+ white-space: nowrap;
+}
+
+.dropdown-menu > li > a:hover,
+.dropdown-menu > li > a:focus {
+ color: #ffffff;
+ text-decoration: none;
+ background-color: #428bca;
+}
+
+.dropdown-menu > .active > a,
+.dropdown-menu > .active > a:hover,
+.dropdown-menu > .active > a:focus {
+ color: #ffffff;
+ text-decoration: none;
+ background-color: #428bca;
+ outline: 0;
+}
+
+.dropdown-menu > .disabled > a,
+.dropdown-menu > .disabled > a:hover,
+.dropdown-menu > .disabled > a:focus {
+ color: #999999;
+}
+
+.dropdown-menu > .disabled > a:hover,
+.dropdown-menu > .disabled > a:focus {
+ text-decoration: none;
+ cursor: not-allowed;
+ background-color: transparent;
+ background-image: none;
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled=false);
+}
+
+.open > .dropdown-menu {
+ display: block;
+}
+
+.open > a {
+ outline: 0;
+}
+
+.dropdown-header {
+ display: block;
+ padding: 3px 20px;
+ font-size: 12px;
+ line-height: 1.428571429;
+ color: #999999;
+}
+
+.dropdown-backdrop {
+ position: fixed;
+ top: 0;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ z-index: 990;
+}
+
+.pull-right > .dropdown-menu {
+ right: 0;
+ left: auto;
+}
+
+.dropup .caret,
+.navbar-fixed-bottom .dropdown .caret {
+ border-top: 0 dotted;
+ border-bottom: 4px solid #000000;
+ content: "";
+}
+
+.dropup .dropdown-menu,
+.navbar-fixed-bottom .dropdown .dropdown-menu {
+ top: auto;
+ bottom: 100%;
+ margin-bottom: 1px;
+}
+
+@media (min-width: 768px) {
+ .navbar-right .dropdown-menu {
+ right: 0;
+ left: auto;
+ }
+}
+
+.btn-default .caret {
+ border-top-color: #333333;
+}
+
+.btn-primary .caret,
+.btn-success .caret,
+.btn-warning .caret,
+.btn-danger .caret,
+.btn-info .caret {
+ border-top-color: #fff;
+}
+
+.dropup .btn-default .caret {
+ border-bottom-color: #333333;
+}
+
+.dropup .btn-primary .caret,
+.dropup .btn-success .caret,
+.dropup .btn-warning .caret,
+.dropup .btn-danger .caret,
+.dropup .btn-info .caret {
+ border-bottom-color: #fff;
+}
+
+.btn-group,
+.btn-group-vertical {
+ position: relative;
+ display: inline-block;
+ vertical-align: middle;
+}
+
+.btn-group > .btn,
+.btn-group-vertical > .btn {
+ position: relative;
+ float: left;
+}
+
+.btn-group > .btn:hover,
+.btn-group-vertical > .btn:hover,
+.btn-group > .btn:focus,
+.btn-group-vertical > .btn:focus,
+.btn-group > .btn:active,
+.btn-group-vertical > .btn:active,
+.btn-group > .btn.active,
+.btn-group-vertical > .btn.active {
+ z-index: 2;
+}
+
+.btn-group > .btn:focus,
+.btn-group-vertical > .btn:focus {
+ outline: none;
+}
+
+.btn-group .btn + .btn,
+.btn-group .btn + .btn-group,
+.btn-group .btn-group + .btn,
+.btn-group .btn-group + .btn-group {
+ margin-left: -1px;
+}
+
+.btn-toolbar:before,
+.btn-toolbar:after {
+ display: table;
+ content: " ";
+}
+
+.btn-toolbar:after {
+ clear: both;
+}
+
+.btn-toolbar:before,
+.btn-toolbar:after {
+ display: table;
+ content: " ";
+}
+
+.btn-toolbar:after {
+ clear: both;
+}
+
+.btn-toolbar .btn-group {
+ float: left;
+}
+
+.btn-toolbar > .btn + .btn,
+.btn-toolbar > .btn-group + .btn,
+.btn-toolbar > .btn + .btn-group,
+.btn-toolbar > .btn-group + .btn-group {
+ margin-left: 5px;
+}
+
+.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {
+ border-radius: 0;
+}
+
+.btn-group > .btn:first-child {
+ margin-left: 0;
+}
+
+.btn-group > .btn:first-child:not(:last-child):not(.dropdown-toggle) {
+ border-top-right-radius: 0;
+ border-bottom-right-radius: 0;
+}
+
+.btn-group > .btn:last-child:not(:first-child),
+.btn-group > .dropdown-toggle:not(:first-child) {
+ border-bottom-left-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.btn-group > .btn-group {
+ float: left;
+}
+
+.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn {
+ border-radius: 0;
+}
+
+.btn-group > .btn-group:first-child > .btn:last-child,
+.btn-group > .btn-group:first-child > .dropdown-toggle {
+ border-top-right-radius: 0;
+ border-bottom-right-radius: 0;
+}
+
+.btn-group > .btn-group:last-child > .btn:first-child {
+ border-bottom-left-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.btn-group .dropdown-toggle:active,
+.btn-group.open .dropdown-toggle {
+ outline: 0;
+}
+
+.btn-group-xs > .btn {
+ padding: 5px 10px;
+ padding: 1px 5px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+
+.btn-group-sm > .btn {
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+
+.btn-group-lg > .btn {
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+
+.btn-group > .btn + .dropdown-toggle {
+ padding-right: 8px;
+ padding-left: 8px;
+}
+
+.btn-group > .btn-lg + .dropdown-toggle {
+ padding-right: 12px;
+ padding-left: 12px;
+}
+
+.btn-group.open .dropdown-toggle {
+ -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
+ box-shadow: inset 0 3px 5px rgba(0, 0, 0, 0.125);
+}
+
+.btn .caret {
+ margin-left: 0;
+}
+
+.btn-lg .caret {
+ border-width: 5px 5px 0;
+ border-bottom-width: 0;
+}
+
+.dropup .btn-lg .caret {
+ border-width: 0 5px 5px;
+}
+
+.btn-group-vertical > .btn,
+.btn-group-vertical > .btn-group {
+ display: block;
+ float: none;
+ width: 100%;
+ max-width: 100%;
+}
+
+.btn-group-vertical > .btn-group:before,
+.btn-group-vertical > .btn-group:after {
+ display: table;
+ content: " ";
+}
+
+.btn-group-vertical > .btn-group:after {
+ clear: both;
+}
+
+.btn-group-vertical > .btn-group:before,
+.btn-group-vertical > .btn-group:after {
+ display: table;
+ content: " ";
+}
+
+.btn-group-vertical > .btn-group:after {
+ clear: both;
+}
+
+.btn-group-vertical > .btn-group > .btn {
+ float: none;
+}
+
+.btn-group-vertical > .btn + .btn,
+.btn-group-vertical > .btn + .btn-group,
+.btn-group-vertical > .btn-group + .btn,
+.btn-group-vertical > .btn-group + .btn-group {
+ margin-top: -1px;
+ margin-left: 0;
+}
+
+.btn-group-vertical > .btn:not(:first-child):not(:last-child) {
+ border-radius: 0;
+}
+
+.btn-group-vertical > .btn:first-child:not(:last-child) {
+ border-top-right-radius: 4px;
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+}
+
+.btn-group-vertical > .btn:last-child:not(:first-child) {
+ border-top-right-radius: 0;
+ border-bottom-left-radius: 4px;
+ border-top-left-radius: 0;
+}
+
+.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn {
+ border-radius: 0;
+}
+
+.btn-group-vertical > .btn-group:first-child > .btn:last-child,
+.btn-group-vertical > .btn-group:first-child > .dropdown-toggle {
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+}
+
+.btn-group-vertical > .btn-group:last-child > .btn:first-child {
+ border-top-right-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.btn-group-justified {
+ display: table;
+ width: 100%;
+ border-collapse: separate;
+ table-layout: fixed;
+}
+
+.btn-group-justified .btn {
+ display: table-cell;
+ float: none;
+ width: 1%;
+}
+
+[data-toggle="buttons"] > .btn > input[type="radio"],
+[data-toggle="buttons"] > .btn > input[type="checkbox"] {
+ display: none;
+}
+
+.input-group {
+ position: relative;
+ display: table;
+ border-collapse: separate;
+}
+
+.input-group.col {
+ float: none;
+ padding-right: 0;
+ padding-left: 0;
+}
+
+.input-group .form-control {
+ width: 100%;
+ margin-bottom: 0;
+}
+
+.input-group-lg > .form-control,
+.input-group-lg > .input-group-addon,
+.input-group-lg > .input-group-btn > .btn {
+ height: 45px;
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+
+select.input-group-lg > .form-control,
+select.input-group-lg > .input-group-addon,
+select.input-group-lg > .input-group-btn > .btn {
+ height: 45px;
+ line-height: 45px;
+}
+
+textarea.input-group-lg > .form-control,
+textarea.input-group-lg > .input-group-addon,
+textarea.input-group-lg > .input-group-btn > .btn {
+ height: auto;
+}
+
+.input-group-sm > .form-control,
+.input-group-sm > .input-group-addon,
+.input-group-sm > .input-group-btn > .btn {
+ height: 30px;
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+
+select.input-group-sm > .form-control,
+select.input-group-sm > .input-group-addon,
+select.input-group-sm > .input-group-btn > .btn {
+ height: 30px;
+ line-height: 30px;
+}
+
+textarea.input-group-sm > .form-control,
+textarea.input-group-sm > .input-group-addon,
+textarea.input-group-sm > .input-group-btn > .btn {
+ height: auto;
+}
+
+.input-group-addon,
+.input-group-btn,
+.input-group .form-control {
+ display: table-cell;
+}
+
+.input-group-addon:not(:first-child):not(:last-child),
+.input-group-btn:not(:first-child):not(:last-child),
+.input-group .form-control:not(:first-child):not(:last-child) {
+ border-radius: 0;
+}
+
+.input-group-addon,
+.input-group-btn {
+ width: 1%;
+ white-space: nowrap;
+ vertical-align: middle;
+}
+
+.input-group-addon {
+ padding: 6px 12px;
+ font-size: 14px;
+ font-weight: normal;
+ line-height: 1;
+ text-align: center;
+ background-color: #eeeeee;
+ border: 1px solid #cccccc;
+ border-radius: 4px;
+}
+
+.input-group-addon.input-sm {
+ padding: 5px 10px;
+ font-size: 12px;
+ border-radius: 3px;
+}
+
+.input-group-addon.input-lg {
+ padding: 10px 16px;
+ font-size: 18px;
+ border-radius: 6px;
+}
+
+.input-group-addon input[type="radio"],
+.input-group-addon input[type="checkbox"] {
+ margin-top: 0;
+}
+
+.input-group .form-control:first-child,
+.input-group-addon:first-child,
+.input-group-btn:first-child > .btn,
+.input-group-btn:first-child > .dropdown-toggle,
+.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle) {
+ border-top-right-radius: 0;
+ border-bottom-right-radius: 0;
+}
+
+.input-group-addon:first-child {
+ border-right: 0;
+}
+
+.input-group .form-control:last-child,
+.input-group-addon:last-child,
+.input-group-btn:last-child > .btn,
+.input-group-btn:last-child > .dropdown-toggle,
+.input-group-btn:first-child > .btn:not(:first-child) {
+ border-bottom-left-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.input-group-addon:last-child {
+ border-left: 0;
+}
+
+.input-group-btn {
+ position: relative;
+ white-space: nowrap;
+}
+
+.input-group-btn > .btn {
+ position: relative;
+}
+
+.input-group-btn > .btn + .btn {
+ margin-left: -4px;
+}
+
+.input-group-btn > .btn:hover,
+.input-group-btn > .btn:active {
+ z-index: 2;
+}
+
+.nav {
+ padding-left: 0;
+ margin-bottom: 0;
+ list-style: none;
+}
+
+.nav:before,
+.nav:after {
+ display: table;
+ content: " ";
+}
+
+.nav:after {
+ clear: both;
+}
+
+.nav:before,
+.nav:after {
+ display: table;
+ content: " ";
+}
+
+.nav:after {
+ clear: both;
+}
+
+.nav > li {
+ position: relative;
+ display: block;
+}
+
+.nav > li > a {
+ position: relative;
+ display: block;
+ padding: 10px 15px;
+}
+
+.nav > li > a:hover,
+.nav > li > a:focus {
+ text-decoration: none;
+ background-color: #eeeeee;
+}
+
+.nav > li.disabled > a {
+ color: #999999;
+}
+
+.nav > li.disabled > a:hover,
+.nav > li.disabled > a:focus {
+ color: #999999;
+ text-decoration: none;
+ cursor: not-allowed;
+ background-color: transparent;
+}
+
+.nav .open > a,
+.nav .open > a:hover,
+.nav .open > a:focus {
+ background-color: #eeeeee;
+ border-color: #428bca;
+}
+
+.nav .nav-divider {
+ height: 1px;
+ margin: 9px 0;
+ overflow: hidden;
+ background-color: #e5e5e5;
+}
+
+.nav > li > a > img {
+ max-width: none;
+}
+
+.nav-tabs {
+ border-bottom: 1px solid #dddddd;
+}
+
+.nav-tabs > li {
+ float: left;
+ margin-bottom: -1px;
+}
+
+.nav-tabs > li > a {
+ margin-right: 2px;
+ line-height: 1.428571429;
+ border: 1px solid transparent;
+ border-radius: 4px 4px 0 0;
+}
+
+.nav-tabs > li > a:hover {
+ border-color: #eeeeee #eeeeee #dddddd;
+}
+
+.nav-tabs > li.active > a,
+.nav-tabs > li.active > a:hover,
+.nav-tabs > li.active > a:focus {
+ color: #555555;
+ cursor: default;
+ background-color: #ffffff;
+ border: 1px solid #dddddd;
+ border-bottom-color: transparent;
+}
+
+.nav-tabs.nav-justified {
+ width: 100%;
+ border-bottom: 0;
+}
+
+.nav-tabs.nav-justified > li {
+ float: none;
+}
+
+.nav-tabs.nav-justified > li > a {
+ text-align: center;
+}
+
+@media (min-width: 768px) {
+ .nav-tabs.nav-justified > li {
+ display: table-cell;
+ width: 1%;
+ }
+}
+
+.nav-tabs.nav-justified > li > a {
+ margin-right: 0;
+ border-bottom: 1px solid #dddddd;
+}
+
+.nav-tabs.nav-justified > .active > a {
+ border-bottom-color: #ffffff;
+}
+
+.nav-pills > li {
+ float: left;
+}
+
+.nav-pills > li > a {
+ border-radius: 5px;
+}
+
+.nav-pills > li + li {
+ margin-left: 2px;
+}
+
+.nav-pills > li.active > a,
+.nav-pills > li.active > a:hover,
+.nav-pills > li.active > a:focus {
+ color: #ffffff;
+ background-color: #428bca;
+}
+
+.nav-stacked > li {
+ float: none;
+}
+
+.nav-stacked > li + li {
+ margin-top: 2px;
+ margin-left: 0;
+}
+
+.nav-justified {
+ width: 100%;
+}
+
+.nav-justified > li {
+ float: none;
+}
+
+.nav-justified > li > a {
+ text-align: center;
+}
+
+@media (min-width: 768px) {
+ .nav-justified > li {
+ display: table-cell;
+ width: 1%;
+ }
+}
+
+.nav-tabs-justified {
+ border-bottom: 0;
+}
+
+.nav-tabs-justified > li > a {
+ margin-right: 0;
+ border-bottom: 1px solid #dddddd;
+}
+
+.nav-tabs-justified > .active > a {
+ border-bottom-color: #ffffff;
+}
+
+.tabbable:before,
+.tabbable:after {
+ display: table;
+ content: " ";
+}
+
+.tabbable:after {
+ clear: both;
+}
+
+.tabbable:before,
+.tabbable:after {
+ display: table;
+ content: " ";
+}
+
+.tabbable:after {
+ clear: both;
+}
+
+.tab-content > .tab-pane,
+.pill-content > .pill-pane {
+ display: none;
+}
+
+.tab-content > .active,
+.pill-content > .active {
+ display: block;
+}
+
+.nav .caret {
+ border-top-color: #428bca;
+ border-bottom-color: #428bca;
+}
+
+.nav a:hover .caret {
+ border-top-color: #2a6496;
+ border-bottom-color: #2a6496;
+}
+
+.nav-tabs .dropdown-menu {
+ margin-top: -1px;
+ border-top-right-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.navbar {
+ position: relative;
+ z-index: 1000;
+ min-height: 50px;
+ margin-bottom: 20px;
+ border: 1px solid transparent;
+}
+
+.navbar:before,
+.navbar:after {
+ display: table;
+ content: " ";
+}
+
+.navbar:after {
+ clear: both;
+}
+
+.navbar:before,
+.navbar:after {
+ display: table;
+ content: " ";
+}
+
+.navbar:after {
+ clear: both;
+}
+
+@media (min-width: 768px) {
+ .navbar {
+ border-radius: 4px;
+ }
+}
+
+.navbar-header:before,
+.navbar-header:after {
+ display: table;
+ content: " ";
+}
+
+.navbar-header:after {
+ clear: both;
+}
+
+.navbar-header:before,
+.navbar-header:after {
+ display: table;
+ content: " ";
+}
+
+.navbar-header:after {
+ clear: both;
+}
+
+@media (min-width: 768px) {
+ .navbar-header {
+ float: left;
+ }
+}
+
+.navbar-collapse {
+ max-height: 340px;
+ padding-right: 15px;
+ padding-left: 15px;
+ overflow-x: visible;
+ border-top: 1px solid transparent;
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1);
+ -webkit-overflow-scrolling: touch;
+}
+
+.navbar-collapse:before,
+.navbar-collapse:after {
+ display: table;
+ content: " ";
+}
+
+.navbar-collapse:after {
+ clear: both;
+}
+
+.navbar-collapse:before,
+.navbar-collapse:after {
+ display: table;
+ content: " ";
+}
+
+.navbar-collapse:after {
+ clear: both;
+}
+
+.navbar-collapse.in {
+ overflow-y: auto;
+}
+
+@media (min-width: 768px) {
+ .navbar-collapse {
+ width: auto;
+ border-top: 0;
+ box-shadow: none;
+ }
+ .navbar-collapse.collapse {
+ display: block !important;
+ height: auto !important;
+ padding-bottom: 0;
+ overflow: visible !important;
+ }
+ .navbar-collapse.in {
+ overflow-y: visible;
+ }
+ .navbar-collapse .navbar-nav.navbar-left:first-child {
+ margin-left: -15px;
+ }
+ .navbar-collapse .navbar-nav.navbar-right:last-child {
+ margin-right: -15px;
+ }
+ .navbar-collapse .navbar-text:last-child {
+ margin-right: 0;
+ }
+}
+
+.container > .navbar-header,
+.container > .navbar-collapse {
+ margin-right: -15px;
+ margin-left: -15px;
+}
+
+@media (min-width: 768px) {
+ .container > .navbar-header,
+ .container > .navbar-collapse {
+ margin-right: 0;
+ margin-left: 0;
+ }
+}
+
+.navbar-static-top {
+ border-width: 0 0 1px;
+}
+
+@media (min-width: 768px) {
+ .navbar-static-top {
+ border-radius: 0;
+ }
+}
+
+.navbar-fixed-top,
+.navbar-fixed-bottom {
+ position: fixed;
+ right: 0;
+ left: 0;
+ border-width: 0 0 1px;
+}
+
+@media (min-width: 768px) {
+ .navbar-fixed-top,
+ .navbar-fixed-bottom {
+ border-radius: 0;
+ }
+}
+
+.navbar-fixed-top {
+ top: 0;
+ z-index: 1030;
+}
+
+.navbar-fixed-bottom {
+ bottom: 0;
+ margin-bottom: 0;
+}
+
+.navbar-brand {
+ float: left;
+ padding: 15px 15px;
+ font-size: 18px;
+ line-height: 20px;
+}
+
+.navbar-brand:hover,
+.navbar-brand:focus {
+ text-decoration: none;
+}
+
+@media (min-width: 768px) {
+ .navbar > .container .navbar-brand {
+ margin-left: -15px;
+ }
+}
+
+.navbar-toggle {
+ position: relative;
+ float: right;
+ padding: 9px 10px;
+ margin-top: 8px;
+ margin-right: 15px;
+ margin-bottom: 8px;
+ background-color: transparent;
+ border: 1px solid transparent;
+ border-radius: 4px;
+}
+
+.navbar-toggle .icon-bar {
+ display: block;
+ width: 22px;
+ height: 2px;
+ border-radius: 1px;
+}
+
+.navbar-toggle .icon-bar + .icon-bar {
+ margin-top: 4px;
+}
+
+@media (min-width: 768px) {
+ .navbar-toggle {
+ display: none;
+ }
+}
+
+.navbar-nav {
+ margin: 7.5px -15px;
+}
+
+.navbar-nav > li > a {
+ padding-top: 10px;
+ padding-bottom: 10px;
+ line-height: 20px;
+}
+
+@media (max-width: 767px) {
+ .navbar-nav .open .dropdown-menu {
+ position: static;
+ float: none;
+ width: auto;
+ margin-top: 0;
+ background-color: transparent;
+ border: 0;
+ box-shadow: none;
+ }
+ .navbar-nav .open .dropdown-menu > li > a,
+ .navbar-nav .open .dropdown-menu .dropdown-header {
+ padding: 5px 15px 5px 25px;
+ }
+ .navbar-nav .open .dropdown-menu > li > a {
+ line-height: 20px;
+ }
+ .navbar-nav .open .dropdown-menu > li > a:hover,
+ .navbar-nav .open .dropdown-menu > li > a:focus {
+ background-image: none;
+ }
+}
+
+@media (min-width: 768px) {
+ .navbar-nav {
+ float: left;
+ margin: 0;
+ }
+ .navbar-nav > li {
+ float: left;
+ }
+ .navbar-nav > li > a {
+ padding-top: 15px;
+ padding-bottom: 15px;
+ }
+}
+
+@media (min-width: 768px) {
+ .navbar-left {
+ float: left !important;
+ }
+ .navbar-right {
+ float: right !important;
+ }
+}
+
+.navbar-form {
+ padding: 10px 15px;
+ margin-top: 8px;
+ margin-right: -15px;
+ margin-bottom: 8px;
+ margin-left: -15px;
+ border-top: 1px solid transparent;
+ border-bottom: 1px solid transparent;
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, 0.1), 0 1px 0 rgba(255, 255, 255, 0.1);
+}
+
+@media (min-width: 768px) {
+ .navbar-form .form-group {
+ display: inline-block;
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .navbar-form .form-control {
+ display: inline-block;
+ }
+ .navbar-form .radio,
+ .navbar-form .checkbox {
+ display: inline-block;
+ padding-left: 0;
+ margin-top: 0;
+ margin-bottom: 0;
+ }
+ .navbar-form .radio input[type="radio"],
+ .navbar-form .checkbox input[type="checkbox"] {
+ float: none;
+ margin-left: 0;
+ }
+}
+
+@media (max-width: 767px) {
+ .navbar-form .form-group {
+ margin-bottom: 5px;
+ }
+}
+
+@media (min-width: 768px) {
+ .navbar-form {
+ width: auto;
+ padding-top: 0;
+ padding-bottom: 0;
+ margin-right: 0;
+ margin-left: 0;
+ border: 0;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+ }
+}
+
+.navbar-nav > li > .dropdown-menu {
+ margin-top: 0;
+ border-top-right-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu {
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+}
+
+.navbar-nav.pull-right > li > .dropdown-menu,
+.navbar-nav > li > .dropdown-menu.pull-right {
+ right: 0;
+ left: auto;
+}
+
+.navbar-btn {
+ margin-top: 8px;
+ margin-bottom: 8px;
+}
+
+.navbar-text {
+ float: left;
+ margin-top: 15px;
+ margin-bottom: 15px;
+}
+
+@media (min-width: 768px) {
+ .navbar-text {
+ margin-right: 15px;
+ margin-left: 15px;
+ }
+}
+
+.navbar-default {
+ background-color: #f8f8f8;
+ border-color: #e7e7e7;
+}
+
+.navbar-default .navbar-brand {
+ color: #777777;
+}
+
+.navbar-default .navbar-brand:hover,
+.navbar-default .navbar-brand:focus {
+ color: #5e5e5e;
+ background-color: transparent;
+}
+
+.navbar-default .navbar-text {
+ color: #777777;
+}
+
+.navbar-default .navbar-nav > li > a {
+ color: #777777;
+}
+
+.navbar-default .navbar-nav > li > a:hover,
+.navbar-default .navbar-nav > li > a:focus {
+ color: #333333;
+ background-color: transparent;
+}
+
+.navbar-default .navbar-nav > .active > a,
+.navbar-default .navbar-nav > .active > a:hover,
+.navbar-default .navbar-nav > .active > a:focus {
+ color: #555555;
+ background-color: #e7e7e7;
+}
+
+.navbar-default .navbar-nav > .disabled > a,
+.navbar-default .navbar-nav > .disabled > a:hover,
+.navbar-default .navbar-nav > .disabled > a:focus {
+ color: #cccccc;
+ background-color: transparent;
+}
+
+.navbar-default .navbar-toggle {
+ border-color: #dddddd;
+}
+
+.navbar-default .navbar-toggle:hover,
+.navbar-default .navbar-toggle:focus {
+ background-color: #dddddd;
+}
+
+.navbar-default .navbar-toggle .icon-bar {
+ background-color: #cccccc;
+}
+
+.navbar-default .navbar-collapse,
+.navbar-default .navbar-form {
+ border-color: #e6e6e6;
+}
+
+.navbar-default .navbar-nav > .dropdown > a:hover .caret,
+.navbar-default .navbar-nav > .dropdown > a:focus .caret {
+ border-top-color: #333333;
+ border-bottom-color: #333333;
+}
+
+.navbar-default .navbar-nav > .open > a,
+.navbar-default .navbar-nav > .open > a:hover,
+.navbar-default .navbar-nav > .open > a:focus {
+ color: #555555;
+ background-color: #e7e7e7;
+}
+
+.navbar-default .navbar-nav > .open > a .caret,
+.navbar-default .navbar-nav > .open > a:hover .caret,
+.navbar-default .navbar-nav > .open > a:focus .caret {
+ border-top-color: #555555;
+ border-bottom-color: #555555;
+}
+
+.navbar-default .navbar-nav > .dropdown > a .caret {
+ border-top-color: #777777;
+ border-bottom-color: #777777;
+}
+
+@media (max-width: 767px) {
+ .navbar-default .navbar-nav .open .dropdown-menu > li > a {
+ color: #777777;
+ }
+ .navbar-default .navbar-nav .open .dropdown-menu > li > a:hover,
+ .navbar-default .navbar-nav .open .dropdown-menu > li > a:focus {
+ color: #333333;
+ background-color: transparent;
+ }
+ .navbar-default .navbar-nav .open .dropdown-menu > .active > a,
+ .navbar-default .navbar-nav .open .dropdown-menu > .active > a:hover,
+ .navbar-default .navbar-nav .open .dropdown-menu > .active > a:focus {
+ color: #555555;
+ background-color: #e7e7e7;
+ }
+ .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a,
+ .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:hover,
+ .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:focus {
+ color: #cccccc;
+ background-color: transparent;
+ }
+}
+
+.navbar-default .navbar-link {
+ color: #777777;
+}
+
+.navbar-default .navbar-link:hover {
+ color: #333333;
+}
+
+.navbar-inverse {
+ background-color: #222222;
+ border-color: #080808;
+}
+
+.navbar-inverse .navbar-brand {
+ color: #999999;
+}
+
+.navbar-inverse .navbar-brand:hover,
+.navbar-inverse .navbar-brand:focus {
+ color: #ffffff;
+ background-color: transparent;
+}
+
+.navbar-inverse .navbar-text {
+ color: #999999;
+}
+
+.navbar-inverse .navbar-nav > li > a {
+ color: #999999;
+}
+
+.navbar-inverse .navbar-nav > li > a:hover,
+.navbar-inverse .navbar-nav > li > a:focus {
+ color: #ffffff;
+ background-color: transparent;
+}
+
+.navbar-inverse .navbar-nav > .active > a,
+.navbar-inverse .navbar-nav > .active > a:hover,
+.navbar-inverse .navbar-nav > .active > a:focus {
+ color: #ffffff;
+ background-color: #080808;
+}
+
+.navbar-inverse .navbar-nav > .disabled > a,
+.navbar-inverse .navbar-nav > .disabled > a:hover,
+.navbar-inverse .navbar-nav > .disabled > a:focus {
+ color: #444444;
+ background-color: transparent;
+}
+
+.navbar-inverse .navbar-toggle {
+ border-color: #333333;
+}
+
+.navbar-inverse .navbar-toggle:hover,
+.navbar-inverse .navbar-toggle:focus {
+ background-color: #333333;
+}
+
+.navbar-inverse .navbar-toggle .icon-bar {
+ background-color: #ffffff;
+}
+
+.navbar-inverse .navbar-collapse,
+.navbar-inverse .navbar-form {
+ border-color: #101010;
+}
+
+.navbar-inverse .navbar-nav > .open > a,
+.navbar-inverse .navbar-nav > .open > a:hover,
+.navbar-inverse .navbar-nav > .open > a:focus {
+ color: #ffffff;
+ background-color: #080808;
+}
+
+.navbar-inverse .navbar-nav > .dropdown > a:hover .caret {
+ border-top-color: #ffffff;
+ border-bottom-color: #ffffff;
+}
+
+.navbar-inverse .navbar-nav > .dropdown > a .caret {
+ border-top-color: #999999;
+ border-bottom-color: #999999;
+}
+
+.navbar-inverse .navbar-nav > .open > a .caret,
+.navbar-inverse .navbar-nav > .open > a:hover .caret,
+.navbar-inverse .navbar-nav > .open > a:focus .caret {
+ border-top-color: #ffffff;
+ border-bottom-color: #ffffff;
+}
+
+@media (max-width: 767px) {
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .dropdown-header {
+ border-color: #080808;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > li > a {
+ color: #999999;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:hover,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:focus {
+ color: #ffffff;
+ background-color: transparent;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:hover,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:focus {
+ color: #ffffff;
+ background-color: #080808;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:hover,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:focus {
+ color: #444444;
+ background-color: transparent;
+ }
+}
+
+.navbar-inverse .navbar-link {
+ color: #999999;
+}
+
+.navbar-inverse .navbar-link:hover {
+ color: #ffffff;
+}
+
+.breadcrumb {
+ padding: 8px 15px;
+ margin-bottom: 20px;
+ list-style: none;
+ background-color: #f5f5f5;
+ border-radius: 4px;
+}
+
+.breadcrumb > li {
+ display: inline-block;
+}
+
+.breadcrumb > li + li:before {
+ padding: 0 5px;
+ color: #cccccc;
+ content: "/\00a0";
+}
+
+.breadcrumb > .active {
+ color: #999999;
+}
+
+.pagination {
+ display: inline-block;
+ padding-left: 0;
+ margin: 20px 0;
+ border-radius: 4px;
+}
+
+.pagination > li {
+ display: inline;
+}
+
+.pagination > li > a,
+.pagination > li > span {
+ position: relative;
+ float: left;
+ padding: 6px 12px;
+ margin-left: -1px;
+ line-height: 1.428571429;
+ text-decoration: none;
+ background-color: #ffffff;
+ border: 1px solid #dddddd;
+}
+
+.pagination > li:first-child > a,
+.pagination > li:first-child > span {
+ margin-left: 0;
+ border-bottom-left-radius: 4px;
+ border-top-left-radius: 4px;
+}
+
+.pagination > li:last-child > a,
+.pagination > li:last-child > span {
+ border-top-right-radius: 4px;
+ border-bottom-right-radius: 4px;
+}
+
+.pagination > li > a:hover,
+.pagination > li > span:hover,
+.pagination > li > a:focus,
+.pagination > li > span:focus {
+ background-color: #eeeeee;
+}
+
+.pagination > .active > a,
+.pagination > .active > span,
+.pagination > .active > a:hover,
+.pagination > .active > span:hover,
+.pagination > .active > a:focus,
+.pagination > .active > span:focus {
+ z-index: 2;
+ color: #ffffff;
+ cursor: default;
+ background-color: #428bca;
+ border-color: #428bca;
+}
+
+.pagination > .disabled > span,
+.pagination > .disabled > a,
+.pagination > .disabled > a:hover,
+.pagination > .disabled > a:focus {
+ color: #999999;
+ cursor: not-allowed;
+ background-color: #ffffff;
+ border-color: #dddddd;
+}
+
+.pagination-lg > li > a,
+.pagination-lg > li > span {
+ padding: 10px 16px;
+ font-size: 18px;
+}
+
+.pagination-lg > li:first-child > a,
+.pagination-lg > li:first-child > span {
+ border-bottom-left-radius: 6px;
+ border-top-left-radius: 6px;
+}
+
+.pagination-lg > li:last-child > a,
+.pagination-lg > li:last-child > span {
+ border-top-right-radius: 6px;
+ border-bottom-right-radius: 6px;
+}
+
+.pagination-sm > li > a,
+.pagination-sm > li > span {
+ padding: 5px 10px;
+ font-size: 12px;
+}
+
+.pagination-sm > li:first-child > a,
+.pagination-sm > li:first-child > span {
+ border-bottom-left-radius: 3px;
+ border-top-left-radius: 3px;
+}
+
+.pagination-sm > li:last-child > a,
+.pagination-sm > li:last-child > span {
+ border-top-right-radius: 3px;
+ border-bottom-right-radius: 3px;
+}
+
+.pager {
+ padding-left: 0;
+ margin: 20px 0;
+ text-align: center;
+ list-style: none;
+}
+
+.pager:before,
+.pager:after {
+ display: table;
+ content: " ";
+}
+
+.pager:after {
+ clear: both;
+}
+
+.pager:before,
+.pager:after {
+ display: table;
+ content: " ";
+}
+
+.pager:after {
+ clear: both;
+}
+
+.pager li {
+ display: inline;
+}
+
+.pager li > a,
+.pager li > span {
+ display: inline-block;
+ padding: 5px 14px;
+ background-color: #ffffff;
+ border: 1px solid #dddddd;
+ border-radius: 15px;
+}
+
+.pager li > a:hover,
+.pager li > a:focus {
+ text-decoration: none;
+ background-color: #eeeeee;
+}
+
+.pager .next > a,
+.pager .next > span {
+ float: right;
+}
+
+.pager .previous > a,
+.pager .previous > span {
+ float: left;
+}
+
+.pager .disabled > a,
+.pager .disabled > a:hover,
+.pager .disabled > a:focus,
+.pager .disabled > span {
+ color: #999999;
+ cursor: not-allowed;
+ background-color: #ffffff;
+}
+
+.label {
+ display: inline;
+ padding: .2em .6em .3em;
+ font-size: 75%;
+ font-weight: bold;
+ line-height: 1;
+ color: #ffffff;
+ text-align: center;
+ white-space: nowrap;
+ vertical-align: baseline;
+ border-radius: .25em;
+}
+
+.label[href]:hover,
+.label[href]:focus {
+ color: #ffffff;
+ text-decoration: none;
+ cursor: pointer;
+}
+
+.label:empty {
+ display: none;
+}
+
+.label-default {
+ background-color: #999999;
+}
+
+.label-default[href]:hover,
+.label-default[href]:focus {
+ background-color: #808080;
+}
+
+.label-primary {
+ background-color: #428bca;
+}
+
+.label-primary[href]:hover,
+.label-primary[href]:focus {
+ background-color: #3071a9;
+}
+
+.label-success {
+ background-color: #5cb85c;
+}
+
+.label-success[href]:hover,
+.label-success[href]:focus {
+ background-color: #449d44;
+}
+
+.label-info {
+ background-color: #5bc0de;
+}
+
+.label-info[href]:hover,
+.label-info[href]:focus {
+ background-color: #31b0d5;
+}
+
+.label-warning {
+ background-color: #f0ad4e;
+}
+
+.label-warning[href]:hover,
+.label-warning[href]:focus {
+ background-color: #ec971f;
+}
+
+.label-danger {
+ background-color: #d9534f;
+}
+
+.label-danger[href]:hover,
+.label-danger[href]:focus {
+ background-color: #c9302c;
+}
+
+.badge {
+ display: inline-block;
+ min-width: 10px;
+ padding: 3px 7px;
+ font-size: 12px;
+ font-weight: bold;
+ line-height: 1;
+ color: #ffffff;
+ text-align: center;
+ white-space: nowrap;
+ vertical-align: baseline;
+ background-color: #999999;
+ border-radius: 10px;
+}
+
+.badge:empty {
+ display: none;
+}
+
+a.badge:hover,
+a.badge:focus {
+ color: #ffffff;
+ text-decoration: none;
+ cursor: pointer;
+}
+
+.btn .badge {
+ position: relative;
+ top: -1px;
+}
+
+a.list-group-item.active > .badge,
+.nav-pills > .active > a > .badge {
+ color: #428bca;
+ background-color: #ffffff;
+}
+
+.nav-pills > li > a > .badge {
+ margin-left: 3px;
+}
+
+.jumbotron {
+ padding: 30px;
+ margin-bottom: 30px;
+ font-size: 21px;
+ font-weight: 200;
+ line-height: 2.1428571435;
+ color: inherit;
+ background-color: #eeeeee;
+}
+
+.jumbotron h1 {
+ line-height: 1;
+ color: inherit;
+}
+
+.jumbotron p {
+ line-height: 1.4;
+}
+
+.container .jumbotron {
+ border-radius: 6px;
+}
+
+@media screen and (min-width: 768px) {
+ .jumbotron {
+ padding-top: 48px;
+ padding-bottom: 48px;
+ }
+ .container .jumbotron {
+ padding-right: 60px;
+ padding-left: 60px;
+ }
+ .jumbotron h1 {
+ font-size: 63px;
+ }
+}
+
+.thumbnail {
+ display: inline-block;
+ display: block;
+ height: auto;
+ max-width: 100%;
+ padding: 4px;
+ line-height: 1.428571429;
+ background-color: #ffffff;
+ border: 1px solid #dddddd;
+ border-radius: 4px;
+ -webkit-transition: all 0.2s ease-in-out;
+ transition: all 0.2s ease-in-out;
+}
+
+.thumbnail > img {
+ display: block;
+ height: auto;
+ max-width: 100%;
+}
+
+a.thumbnail:hover,
+a.thumbnail:focus {
+ border-color: #428bca;
+}
+
+.thumbnail > img {
+ margin-right: auto;
+ margin-left: auto;
+}
+
+.thumbnail .caption {
+ padding: 9px;
+ color: #333333;
+}
+
+.alert {
+ padding: 15px;
+ margin-bottom: 20px;
+ border: 1px solid transparent;
+ border-radius: 4px;
+}
+
+.alert h4 {
+ margin-top: 0;
+ color: inherit;
+}
+
+.alert .alert-link {
+ font-weight: bold;
+}
+
+.alert > p,
+.alert > ul {
+ margin-bottom: 0;
+}
+
+.alert > p + p {
+ margin-top: 5px;
+}
+
+.alert-dismissable {
+ padding-right: 35px;
+}
+
+.alert-dismissable .close {
+ position: relative;
+ top: -2px;
+ right: -21px;
+ color: inherit;
+}
+
+.alert-success {
+ color: #468847;
+ background-color: #dff0d8;
+ border-color: #d6e9c6;
+}
+
+.alert-success hr {
+ border-top-color: #c9e2b3;
+}
+
+.alert-success .alert-link {
+ color: #356635;
+}
+
+.alert-info {
+ color: #3a87ad;
+ background-color: #d9edf7;
+ border-color: #bce8f1;
+}
+
+.alert-info hr {
+ border-top-color: #a6e1ec;
+}
+
+.alert-info .alert-link {
+ color: #2d6987;
+}
+
+.alert-warning {
+ color: #c09853;
+ background-color: #fcf8e3;
+ border-color: #fbeed5;
+}
+
+.alert-warning hr {
+ border-top-color: #f8e5be;
+}
+
+.alert-warning .alert-link {
+ color: #a47e3c;
+}
+
+.alert-danger {
+ color: #b94a48;
+ background-color: #f2dede;
+ border-color: #eed3d7;
+}
+
+.alert-danger hr {
+ border-top-color: #e6c1c7;
+}
+
+.alert-danger .alert-link {
+ color: #953b39;
+}
+
+@-webkit-keyframes progress-bar-stripes {
+ from {
+ background-position: 40px 0;
+ }
+ to {
+ background-position: 0 0;
+ }
+}
+
+@-moz-keyframes progress-bar-stripes {
+ from {
+ background-position: 40px 0;
+ }
+ to {
+ background-position: 0 0;
+ }
+}
+
+@-o-keyframes progress-bar-stripes {
+ from {
+ background-position: 0 0;
+ }
+ to {
+ background-position: 40px 0;
+ }
+}
+
+@keyframes progress-bar-stripes {
+ from {
+ background-position: 40px 0;
+ }
+ to {
+ background-position: 0 0;
+ }
+}
+
+.progress {
+ height: 20px;
+ margin-bottom: 20px;
+ overflow: hidden;
+ background-color: #f5f5f5;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1);
+ box-shadow: inset 0 1px 2px rgba(0, 0, 0, 0.1);
+}
+
+.progress-bar {
+ float: left;
+ width: 0;
+ height: 100%;
+ font-size: 12px;
+ color: #ffffff;
+ text-align: center;
+ background-color: #428bca;
+ -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15);
+ box-shadow: inset 0 -1px 0 rgba(0, 0, 0, 0.15);
+ -webkit-transition: width 0.6s ease;
+ transition: width 0.6s ease;
+}
+
+.progress-striped .progress-bar {
+ background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent));
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-size: 40px 40px;
+}
+
+.progress.active .progress-bar {
+ -webkit-animation: progress-bar-stripes 2s linear infinite;
+ -moz-animation: progress-bar-stripes 2s linear infinite;
+ -ms-animation: progress-bar-stripes 2s linear infinite;
+ -o-animation: progress-bar-stripes 2s linear infinite;
+ animation: progress-bar-stripes 2s linear infinite;
+}
+
+.progress-bar-success {
+ background-color: #5cb85c;
+}
+
+.progress-striped .progress-bar-success {
+ background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent));
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+}
+
+.progress-bar-info {
+ background-color: #5bc0de;
+}
+
+.progress-striped .progress-bar-info {
+ background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent));
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+}
+
+.progress-bar-warning {
+ background-color: #f0ad4e;
+}
+
+.progress-striped .progress-bar-warning {
+ background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent));
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+}
+
+.progress-bar-danger {
+ background-color: #d9534f;
+}
+
+.progress-striped .progress-bar-danger {
+ background-image: -webkit-gradient(linear, 0 100%, 100% 0, color-stop(0.25, rgba(255, 255, 255, 0.15)), color-stop(0.25, transparent), color-stop(0.5, transparent), color-stop(0.5, rgba(255, 255, 255, 0.15)), color-stop(0.75, rgba(255, 255, 255, 0.15)), color-stop(0.75, transparent), to(transparent));
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: -moz-linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, 0.15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, 0.15) 50%, rgba(255, 255, 255, 0.15) 75%, transparent 75%, transparent);
+}
+
+.media,
+.media-body {
+ overflow: hidden;
+ zoom: 1;
+}
+
+.media,
+.media .media {
+ margin-top: 15px;
+}
+
+.media:first-child {
+ margin-top: 0;
+}
+
+.media-object {
+ display: block;
+}
+
+.media-heading {
+ margin: 0 0 5px;
+}
+
+.media > .pull-left {
+ margin-right: 10px;
+}
+
+.media > .pull-right {
+ margin-left: 10px;
+}
+
+.media-list {
+ padding-left: 0;
+ list-style: none;
+}
+
+.list-group {
+ padding-left: 0;
+ margin-bottom: 20px;
+}
+
+.list-group-item {
+ position: relative;
+ display: block;
+ padding: 10px 15px;
+ margin-bottom: -1px;
+ background-color: #ffffff;
+ border: 1px solid #dddddd;
+}
+
+.list-group-item:first-child {
+ border-top-right-radius: 4px;
+ border-top-left-radius: 4px;
+}
+
+.list-group-item:last-child {
+ margin-bottom: 0;
+ border-bottom-right-radius: 4px;
+ border-bottom-left-radius: 4px;
+}
+
+.list-group-item > .badge {
+ float: right;
+}
+
+.list-group-item > .badge + .badge {
+ margin-right: 5px;
+}
+
+a.list-group-item {
+ color: #555555;
+}
+
+a.list-group-item .list-group-item-heading {
+ color: #333333;
+}
+
+a.list-group-item:hover,
+a.list-group-item:focus {
+ text-decoration: none;
+ background-color: #f5f5f5;
+}
+
+.list-group-item.active,
+.list-group-item.active:hover,
+.list-group-item.active:focus {
+ z-index: 2;
+ color: #ffffff;
+ background-color: #428bca;
+ border-color: #428bca;
+}
+
+.list-group-item.active .list-group-item-heading,
+.list-group-item.active:hover .list-group-item-heading,
+.list-group-item.active:focus .list-group-item-heading {
+ color: inherit;
+}
+
+.list-group-item.active .list-group-item-text,
+.list-group-item.active:hover .list-group-item-text,
+.list-group-item.active:focus .list-group-item-text {
+ color: #e1edf7;
+}
+
+.list-group-item-heading {
+ margin-top: 0;
+ margin-bottom: 5px;
+}
+
+.list-group-item-text {
+ margin-bottom: 0;
+ line-height: 1.3;
+}
+
+.panel {
+ margin-bottom: 20px;
+ background-color: #ffffff;
+ border: 1px solid transparent;
+ border-radius: 4px;
+ -webkit-box-shadow: 0 1px 1px rgba(0, 0, 0, 0.05);
+ box-shadow: 0 1px 1px rgba(0, 0, 0, 0.05);
+}
+
+.panel-body {
+ padding: 15px;
+}
+
+.panel-body:before,
+.panel-body:after {
+ display: table;
+ content: " ";
+}
+
+.panel-body:after {
+ clear: both;
+}
+
+.panel-body:before,
+.panel-body:after {
+ display: table;
+ content: " ";
+}
+
+.panel-body:after {
+ clear: both;
+}
+
+.panel > .list-group {
+ margin-bottom: 0;
+}
+
+.panel > .list-group .list-group-item {
+ border-width: 1px 0;
+}
+
+.panel > .list-group .list-group-item:first-child {
+ border-top-right-radius: 0;
+ border-top-left-radius: 0;
+}
+
+.panel > .list-group .list-group-item:last-child {
+ border-bottom: 0;
+}
+
+.panel-heading + .list-group .list-group-item:first-child {
+ border-top-width: 0;
+}
+
+.panel > .table {
+ margin-bottom: 0;
+}
+
+.panel > .panel-body + .table {
+ border-top: 1px solid #dddddd;
+}
+
+.panel-heading {
+ padding: 10px 15px;
+ border-bottom: 1px solid transparent;
+ border-top-right-radius: 3px;
+ border-top-left-radius: 3px;
+}
+
+.panel-title {
+ margin-top: 0;
+ margin-bottom: 0;
+ font-size: 16px;
+}
+
+.panel-title > a {
+ color: inherit;
+}
+
+.panel-footer {
+ padding: 10px 15px;
+ background-color: #f5f5f5;
+ border-top: 1px solid #dddddd;
+ border-bottom-right-radius: 3px;
+ border-bottom-left-radius: 3px;
+}
+
+.panel-group .panel {
+ margin-bottom: 0;
+ overflow: hidden;
+ border-radius: 4px;
+}
+
+.panel-group .panel + .panel {
+ margin-top: 5px;
+}
+
+.panel-group .panel-heading {
+ border-bottom: 0;
+}
+
+.panel-group .panel-heading + .panel-collapse .panel-body {
+ border-top: 1px solid #dddddd;
+}
+
+.panel-group .panel-footer {
+ border-top: 0;
+}
+
+.panel-group .panel-footer + .panel-collapse .panel-body {
+ border-bottom: 1px solid #dddddd;
+}
+
+.panel-default {
+ border-color: #dddddd;
+}
+
+.panel-default > .panel-heading {
+ color: #333333;
+ background-color: #f5f5f5;
+ border-color: #dddddd;
+}
+
+.panel-default > .panel-heading + .panel-collapse .panel-body {
+ border-top-color: #dddddd;
+}
+
+.panel-default > .panel-footer + .panel-collapse .panel-body {
+ border-bottom-color: #dddddd;
+}
+
+.panel-primary {
+ border-color: #428bca;
+}
+
+.panel-primary > .panel-heading {
+ color: #ffffff;
+ background-color: #428bca;
+ border-color: #428bca;
+}
+
+.panel-primary > .panel-heading + .panel-collapse .panel-body {
+ border-top-color: #428bca;
+}
+
+.panel-primary > .panel-footer + .panel-collapse .panel-body {
+ border-bottom-color: #428bca;
+}
+
+.panel-success {
+ border-color: #d6e9c6;
+}
+
+.panel-success > .panel-heading {
+ color: #468847;
+ background-color: #dff0d8;
+ border-color: #d6e9c6;
+}
+
+.panel-success > .panel-heading + .panel-collapse .panel-body {
+ border-top-color: #d6e9c6;
+}
+
+.panel-success > .panel-footer + .panel-collapse .panel-body {
+ border-bottom-color: #d6e9c6;
+}
+
+.panel-warning {
+ border-color: #fbeed5;
+}
+
+.panel-warning > .panel-heading {
+ color: #c09853;
+ background-color: #fcf8e3;
+ border-color: #fbeed5;
+}
+
+.panel-warning > .panel-heading + .panel-collapse .panel-body {
+ border-top-color: #fbeed5;
+}
+
+.panel-warning > .panel-footer + .panel-collapse .panel-body {
+ border-bottom-color: #fbeed5;
+}
+
+.panel-danger {
+ border-color: #eed3d7;
+}
+
+.panel-danger > .panel-heading {
+ color: #b94a48;
+ background-color: #f2dede;
+ border-color: #eed3d7;
+}
+
+.panel-danger > .panel-heading + .panel-collapse .panel-body {
+ border-top-color: #eed3d7;
+}
+
+.panel-danger > .panel-footer + .panel-collapse .panel-body {
+ border-bottom-color: #eed3d7;
+}
+
+.panel-info {
+ border-color: #bce8f1;
+}
+
+.panel-info > .panel-heading {
+ color: #3a87ad;
+ background-color: #d9edf7;
+ border-color: #bce8f1;
+}
+
+.panel-info > .panel-heading + .panel-collapse .panel-body {
+ border-top-color: #bce8f1;
+}
+
+.panel-info > .panel-footer + .panel-collapse .panel-body {
+ border-bottom-color: #bce8f1;
+}
+
+.well {
+ min-height: 20px;
+ padding: 19px;
+ margin-bottom: 20px;
+ background-color: #f5f5f5;
+ border: 1px solid #e3e3e3;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, 0.05);
+}
+
+.well blockquote {
+ border-color: #ddd;
+ border-color: rgba(0, 0, 0, 0.15);
+}
+
+.well-lg {
+ padding: 24px;
+ border-radius: 6px;
+}
+
+.well-sm {
+ padding: 9px;
+ border-radius: 3px;
+}
+
+.close {
+ float: right;
+ font-size: 21px;
+ font-weight: bold;
+ line-height: 1;
+ color: #000000;
+ text-shadow: 0 1px 0 #ffffff;
+ opacity: 0.2;
+ filter: alpha(opacity=20);
+}
+
+.close:hover,
+.close:focus {
+ color: #000000;
+ text-decoration: none;
+ cursor: pointer;
+ opacity: 0.5;
+ filter: alpha(opacity=50);
+}
+
+button.close {
+ padding: 0;
+ cursor: pointer;
+ background: transparent;
+ border: 0;
+ -webkit-appearance: none;
+}
+
+.modal-open {
+ overflow: hidden;
+}
+
+body.modal-open,
+.modal-open .navbar-fixed-top,
+.modal-open .navbar-fixed-bottom {
+ margin-right: 15px;
+}
+
+.modal {
+ position: fixed;
+ top: 0;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ z-index: 1040;
+ display: none;
+ overflow: auto;
+ overflow-y: scroll;
+}
+
+.modal.fade .modal-dialog {
+ -webkit-transform: translate(0, -25%);
+ -ms-transform: translate(0, -25%);
+ transform: translate(0, -25%);
+ -webkit-transition: -webkit-transform 0.3s ease-out;
+ -moz-transition: -moz-transform 0.3s ease-out;
+ -o-transition: -o-transform 0.3s ease-out;
+ transition: transform 0.3s ease-out;
+}
+
+.modal.in .modal-dialog {
+ -webkit-transform: translate(0, 0);
+ -ms-transform: translate(0, 0);
+ transform: translate(0, 0);
+}
+
+.modal-dialog {
+ z-index: 1050;
+ width: auto;
+ padding: 10px;
+ margin-right: auto;
+ margin-left: auto;
+}
+
+.modal-content {
+ position: relative;
+ background-color: #ffffff;
+ border: 1px solid #999999;
+ border: 1px solid rgba(0, 0, 0, 0.2);
+ border-radius: 6px;
+ outline: none;
+ -webkit-box-shadow: 0 3px 9px rgba(0, 0, 0, 0.5);
+ box-shadow: 0 3px 9px rgba(0, 0, 0, 0.5);
+ background-clip: padding-box;
+}
+
+.modal-backdrop {
+ position: fixed;
+ top: 0;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ z-index: 1030;
+ background-color: #000000;
+}
+
+.modal-backdrop.fade {
+ opacity: 0;
+ filter: alpha(opacity=0);
+}
+
+.modal-backdrop.in {
+ opacity: 0.5;
+ filter: alpha(opacity=50);
+}
+
+.modal-header {
+ min-height: 16.428571429px;
+ padding: 15px;
+ border-bottom: 1px solid #e5e5e5;
+}
+
+.modal-header .close {
+ margin-top: -2px;
+}
+
+.modal-title {
+ margin: 0;
+ line-height: 1.428571429;
+}
+
+.modal-body {
+ position: relative;
+ padding: 20px;
+}
+
+.modal-footer {
+ padding: 19px 20px 20px;
+ margin-top: 15px;
+ text-align: right;
+ border-top: 1px solid #e5e5e5;
+}
+
+.modal-footer:before,
+.modal-footer:after {
+ display: table;
+ content: " ";
+}
+
+.modal-footer:after {
+ clear: both;
+}
+
+.modal-footer:before,
+.modal-footer:after {
+ display: table;
+ content: " ";
+}
+
+.modal-footer:after {
+ clear: both;
+}
+
+.modal-footer .btn + .btn {
+ margin-bottom: 0;
+ margin-left: 5px;
+}
+
+.modal-footer .btn-group .btn + .btn {
+ margin-left: -1px;
+}
+
+.modal-footer .btn-block + .btn-block {
+ margin-left: 0;
+}
+
+@media screen and (min-width: 768px) {
+ .modal-dialog {
+ right: auto;
+ left: 50%;
+ width: 600px;
+ padding-top: 30px;
+ padding-bottom: 30px;
+ }
+ .modal-content {
+ -webkit-box-shadow: 0 5px 15px rgba(0, 0, 0, 0.5);
+ box-shadow: 0 5px 15px rgba(0, 0, 0, 0.5);
+ }
+}
+
+.tooltip {
+ position: absolute;
+ z-index: 1030;
+ display: block;
+ font-size: 12px;
+ line-height: 1.4;
+ opacity: 0;
+ filter: alpha(opacity=0);
+ visibility: visible;
+}
+
+.tooltip.in {
+ opacity: 0.9;
+ filter: alpha(opacity=90);
+}
+
+.tooltip.top {
+ padding: 5px 0;
+ margin-top: -3px;
+}
+
+.tooltip.right {
+ padding: 0 5px;
+ margin-left: 3px;
+}
+
+.tooltip.bottom {
+ padding: 5px 0;
+ margin-top: 3px;
+}
+
+.tooltip.left {
+ padding: 0 5px;
+ margin-left: -3px;
+}
+
+.tooltip-inner {
+ max-width: 200px;
+ padding: 3px 8px;
+ color: #ffffff;
+ text-align: center;
+ text-decoration: none;
+ background-color: #000000;
+ border-radius: 4px;
+}
+
+.tooltip-arrow {
+ position: absolute;
+ width: 0;
+ height: 0;
+ border-color: transparent;
+ border-style: solid;
+}
+
+.tooltip.top .tooltip-arrow {
+ bottom: 0;
+ left: 50%;
+ margin-left: -5px;
+ border-top-color: #000000;
+ border-width: 5px 5px 0;
+}
+
+.tooltip.top-left .tooltip-arrow {
+ bottom: 0;
+ left: 5px;
+ border-top-color: #000000;
+ border-width: 5px 5px 0;
+}
+
+.tooltip.top-right .tooltip-arrow {
+ right: 5px;
+ bottom: 0;
+ border-top-color: #000000;
+ border-width: 5px 5px 0;
+}
+
+.tooltip.right .tooltip-arrow {
+ top: 50%;
+ left: 0;
+ margin-top: -5px;
+ border-right-color: #000000;
+ border-width: 5px 5px 5px 0;
+}
+
+.tooltip.left .tooltip-arrow {
+ top: 50%;
+ right: 0;
+ margin-top: -5px;
+ border-left-color: #000000;
+ border-width: 5px 0 5px 5px;
+}
+
+.tooltip.bottom .tooltip-arrow {
+ top: 0;
+ left: 50%;
+ margin-left: -5px;
+ border-bottom-color: #000000;
+ border-width: 0 5px 5px;
+}
+
+.tooltip.bottom-left .tooltip-arrow {
+ top: 0;
+ left: 5px;
+ border-bottom-color: #000000;
+ border-width: 0 5px 5px;
+}
+
+.tooltip.bottom-right .tooltip-arrow {
+ top: 0;
+ right: 5px;
+ border-bottom-color: #000000;
+ border-width: 0 5px 5px;
+}
+
+.popover {
+ position: absolute;
+ top: 0;
+ left: 0;
+ z-index: 1010;
+ display: none;
+ max-width: 276px;
+ padding: 1px;
+ text-align: left;
+ white-space: normal;
+ background-color: #ffffff;
+ border: 1px solid #cccccc;
+ border: 1px solid rgba(0, 0, 0, 0.2);
+ border-radius: 6px;
+ -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2);
+ box-shadow: 0 5px 10px rgba(0, 0, 0, 0.2);
+ background-clip: padding-box;
+}
+
+.popover.top {
+ margin-top: -10px;
+}
+
+.popover.right {
+ margin-left: 10px;
+}
+
+.popover.bottom {
+ margin-top: 10px;
+}
+
+.popover.left {
+ margin-left: -10px;
+}
+
+.popover-title {
+ padding: 8px 14px;
+ margin: 0;
+ font-size: 14px;
+ font-weight: normal;
+ line-height: 18px;
+ background-color: #f7f7f7;
+ border-bottom: 1px solid #ebebeb;
+ border-radius: 5px 5px 0 0;
+}
+
+.popover-content {
+ padding: 9px 14px;
+}
+
+.popover .arrow,
+.popover .arrow:after {
+ position: absolute;
+ display: block;
+ width: 0;
+ height: 0;
+ border-color: transparent;
+ border-style: solid;
+}
+
+.popover .arrow {
+ border-width: 11px;
+}
+
+.popover .arrow:after {
+ border-width: 10px;
+ content: "";
+}
+
+.popover.top .arrow {
+ bottom: -11px;
+ left: 50%;
+ margin-left: -11px;
+ border-top-color: #999999;
+ border-top-color: rgba(0, 0, 0, 0.25);
+ border-bottom-width: 0;
+}
+
+.popover.top .arrow:after {
+ bottom: 1px;
+ margin-left: -10px;
+ border-top-color: #ffffff;
+ border-bottom-width: 0;
+ content: " ";
+}
+
+.popover.right .arrow {
+ top: 50%;
+ left: -11px;
+ margin-top: -11px;
+ border-right-color: #999999;
+ border-right-color: rgba(0, 0, 0, 0.25);
+ border-left-width: 0;
+}
+
+.popover.right .arrow:after {
+ bottom: -10px;
+ left: 1px;
+ border-right-color: #ffffff;
+ border-left-width: 0;
+ content: " ";
+}
+
+.popover.bottom .arrow {
+ top: -11px;
+ left: 50%;
+ margin-left: -11px;
+ border-bottom-color: #999999;
+ border-bottom-color: rgba(0, 0, 0, 0.25);
+ border-top-width: 0;
+}
+
+.popover.bottom .arrow:after {
+ top: 1px;
+ margin-left: -10px;
+ border-bottom-color: #ffffff;
+ border-top-width: 0;
+ content: " ";
+}
+
+.popover.left .arrow {
+ top: 50%;
+ right: -11px;
+ margin-top: -11px;
+ border-left-color: #999999;
+ border-left-color: rgba(0, 0, 0, 0.25);
+ border-right-width: 0;
+}
+
+.popover.left .arrow:after {
+ right: 1px;
+ bottom: -10px;
+ border-left-color: #ffffff;
+ border-right-width: 0;
+ content: " ";
+}
+
+.carousel {
+ position: relative;
+}
+
+.carousel-inner {
+ position: relative;
+ width: 100%;
+ overflow: hidden;
+}
+
+.carousel-inner > .item {
+ position: relative;
+ display: none;
+ -webkit-transition: 0.6s ease-in-out left;
+ transition: 0.6s ease-in-out left;
+}
+
+.carousel-inner > .item > img,
+.carousel-inner > .item > a > img {
+ display: block;
+ height: auto;
+ max-width: 100%;
+ line-height: 1;
+}
+
+.carousel-inner > .active,
+.carousel-inner > .next,
+.carousel-inner > .prev {
+ display: block;
+}
+
+.carousel-inner > .active {
+ left: 0;
+}
+
+.carousel-inner > .next,
+.carousel-inner > .prev {
+ position: absolute;
+ top: 0;
+ width: 100%;
+}
+
+.carousel-inner > .next {
+ left: 100%;
+}
+
+.carousel-inner > .prev {
+ left: -100%;
+}
+
+.carousel-inner > .next.left,
+.carousel-inner > .prev.right {
+ left: 0;
+}
+
+.carousel-inner > .active.left {
+ left: -100%;
+}
+
+.carousel-inner > .active.right {
+ left: 100%;
+}
+
+.carousel-control {
+ position: absolute;
+ top: 0;
+ bottom: 0;
+ left: 0;
+ width: 15%;
+ font-size: 20px;
+ color: #ffffff;
+ text-align: center;
+ text-shadow: 0 1px 2px rgba(0, 0, 0, 0.6);
+ opacity: 0.5;
+ filter: alpha(opacity=50);
+}
+
+.carousel-control.left {
+ background-image: -webkit-gradient(linear, 0 top, 100% top, from(rgba(0, 0, 0, 0.5)), to(rgba(0, 0, 0, 0.0001)));
+ background-image: -webkit-linear-gradient(left, color-stop(rgba(0, 0, 0, 0.5) 0), color-stop(rgba(0, 0, 0, 0.0001) 100%));
+ background-image: -moz-linear-gradient(left, rgba(0, 0, 0, 0.5) 0, rgba(0, 0, 0, 0.0001) 100%);
+ background-image: linear-gradient(to right, rgba(0, 0, 0, 0.5) 0, rgba(0, 0, 0, 0.0001) 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#80000000', endColorstr='#00000000', GradientType=1);
+}
+
+.carousel-control.right {
+ right: 0;
+ left: auto;
+ background-image: -webkit-gradient(linear, 0 top, 100% top, from(rgba(0, 0, 0, 0.0001)), to(rgba(0, 0, 0, 0.5)));
+ background-image: -webkit-linear-gradient(left, color-stop(rgba(0, 0, 0, 0.0001) 0), color-stop(rgba(0, 0, 0, 0.5) 100%));
+ background-image: -moz-linear-gradient(left, rgba(0, 0, 0, 0.0001) 0, rgba(0, 0, 0, 0.5) 100%);
+ background-image: linear-gradient(to right, rgba(0, 0, 0, 0.0001) 0, rgba(0, 0, 0, 0.5) 100%);
+ background-repeat: repeat-x;
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#00000000', endColorstr='#80000000', GradientType=1);
+}
+
+.carousel-control:hover,
+.carousel-control:focus {
+ color: #ffffff;
+ text-decoration: none;
+ opacity: 0.9;
+ filter: alpha(opacity=90);
+}
+
+.carousel-control .icon-prev,
+.carousel-control .icon-next,
+.carousel-control .glyphicon-chevron-left,
+.carousel-control .glyphicon-chevron-right {
+ position: absolute;
+ top: 50%;
+ left: 50%;
+ z-index: 5;
+ display: inline-block;
+}
+
+.carousel-control .icon-prev,
+.carousel-control .icon-next {
+ width: 20px;
+ height: 20px;
+ margin-top: -10px;
+ margin-left: -10px;
+ font-family: serif;
+}
+
+.carousel-control .icon-prev:before {
+ content: '\2039';
+}
+
+.carousel-control .icon-next:before {
+ content: '\203a';
+}
+
+.carousel-indicators {
+ position: absolute;
+ bottom: 10px;
+ left: 50%;
+ z-index: 15;
+ width: 60%;
+ padding-left: 0;
+ margin-left: -30%;
+ text-align: center;
+ list-style: none;
+}
+
+.carousel-indicators li {
+ display: inline-block;
+ width: 10px;
+ height: 10px;
+ margin: 1px;
+ text-indent: -999px;
+ cursor: pointer;
+ border: 1px solid #ffffff;
+ border-radius: 10px;
+}
+
+.carousel-indicators .active {
+ width: 12px;
+ height: 12px;
+ margin: 0;
+ background-color: #ffffff;
+}
+
+.carousel-caption {
+ position: absolute;
+ right: 15%;
+ bottom: 20px;
+ left: 15%;
+ z-index: 10;
+ padding-top: 20px;
+ padding-bottom: 20px;
+ color: #ffffff;
+ text-align: center;
+ text-shadow: 0 1px 2px rgba(0, 0, 0, 0.6);
+}
+
+.carousel-caption .btn {
+ text-shadow: none;
+}
+
+@media screen and (min-width: 768px) {
+ .carousel-control .icon-prev,
+ .carousel-control .icon-next {
+ width: 30px;
+ height: 30px;
+ margin-top: -15px;
+ margin-left: -15px;
+ font-size: 30px;
+ }
+ .carousel-caption {
+ right: 20%;
+ left: 20%;
+ padding-bottom: 30px;
+ }
+ .carousel-indicators {
+ bottom: 20px;
+ }
+}
+
+.clearfix:before,
+.clearfix:after {
+ display: table;
+ content: " ";
+}
+
+.clearfix:after {
+ clear: both;
+}
+
+.pull-right {
+ float: right !important;
+}
+
+.pull-left {
+ float: left !important;
+}
+
+.hide {
+ display: none !important;
+}
+
+.show {
+ display: block !important;
+}
+
+.invisible {
+ visibility: hidden;
+}
+
+.text-hide {
+ font: 0/0 a;
+ color: transparent;
+ text-shadow: none;
+ background-color: transparent;
+ border: 0;
+}
+
+.affix {
+ position: fixed;
+}
+
+@-ms-viewport {
+ width: device-width;
+}
+
+@media screen and (max-width: 400px) {
+ @-ms-viewport {
+ width: 320px;
+ }
+}
+
+.hidden {
+ display: none !important;
+ visibility: hidden !important;
+}
+
+.visible-xs {
+ display: none !important;
+}
+
+tr.visible-xs {
+ display: none !important;
+}
+
+th.visible-xs,
+td.visible-xs {
+ display: none !important;
+}
+
+@media (max-width: 767px) {
+ .visible-xs {
+ display: block !important;
+ }
+ tr.visible-xs {
+ display: table-row !important;
+ }
+ th.visible-xs,
+ td.visible-xs {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-xs.visible-sm {
+ display: block !important;
+ }
+ tr.visible-xs.visible-sm {
+ display: table-row !important;
+ }
+ th.visible-xs.visible-sm,
+ td.visible-xs.visible-sm {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-xs.visible-md {
+ display: block !important;
+ }
+ tr.visible-xs.visible-md {
+ display: table-row !important;
+ }
+ th.visible-xs.visible-md,
+ td.visible-xs.visible-md {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .visible-xs.visible-lg {
+ display: block !important;
+ }
+ tr.visible-xs.visible-lg {
+ display: table-row !important;
+ }
+ th.visible-xs.visible-lg,
+ td.visible-xs.visible-lg {
+ display: table-cell !important;
+ }
+}
+
+.visible-sm {
+ display: none !important;
+}
+
+tr.visible-sm {
+ display: none !important;
+}
+
+th.visible-sm,
+td.visible-sm {
+ display: none !important;
+}
+
+@media (max-width: 767px) {
+ .visible-sm.visible-xs {
+ display: block !important;
+ }
+ tr.visible-sm.visible-xs {
+ display: table-row !important;
+ }
+ th.visible-sm.visible-xs,
+ td.visible-sm.visible-xs {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-sm {
+ display: block !important;
+ }
+ tr.visible-sm {
+ display: table-row !important;
+ }
+ th.visible-sm,
+ td.visible-sm {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-sm.visible-md {
+ display: block !important;
+ }
+ tr.visible-sm.visible-md {
+ display: table-row !important;
+ }
+ th.visible-sm.visible-md,
+ td.visible-sm.visible-md {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .visible-sm.visible-lg {
+ display: block !important;
+ }
+ tr.visible-sm.visible-lg {
+ display: table-row !important;
+ }
+ th.visible-sm.visible-lg,
+ td.visible-sm.visible-lg {
+ display: table-cell !important;
+ }
+}
+
+.visible-md {
+ display: none !important;
+}
+
+tr.visible-md {
+ display: none !important;
+}
+
+th.visible-md,
+td.visible-md {
+ display: none !important;
+}
+
+@media (max-width: 767px) {
+ .visible-md.visible-xs {
+ display: block !important;
+ }
+ tr.visible-md.visible-xs {
+ display: table-row !important;
+ }
+ th.visible-md.visible-xs,
+ td.visible-md.visible-xs {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-md.visible-sm {
+ display: block !important;
+ }
+ tr.visible-md.visible-sm {
+ display: table-row !important;
+ }
+ th.visible-md.visible-sm,
+ td.visible-md.visible-sm {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-md {
+ display: block !important;
+ }
+ tr.visible-md {
+ display: table-row !important;
+ }
+ th.visible-md,
+ td.visible-md {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .visible-md.visible-lg {
+ display: block !important;
+ }
+ tr.visible-md.visible-lg {
+ display: table-row !important;
+ }
+ th.visible-md.visible-lg,
+ td.visible-md.visible-lg {
+ display: table-cell !important;
+ }
+}
+
+.visible-lg {
+ display: none !important;
+}
+
+tr.visible-lg {
+ display: none !important;
+}
+
+th.visible-lg,
+td.visible-lg {
+ display: none !important;
+}
+
+@media (max-width: 767px) {
+ .visible-lg.visible-xs {
+ display: block !important;
+ }
+ tr.visible-lg.visible-xs {
+ display: table-row !important;
+ }
+ th.visible-lg.visible-xs,
+ td.visible-lg.visible-xs {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-lg.visible-sm {
+ display: block !important;
+ }
+ tr.visible-lg.visible-sm {
+ display: table-row !important;
+ }
+ th.visible-lg.visible-sm,
+ td.visible-lg.visible-sm {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-lg.visible-md {
+ display: block !important;
+ }
+ tr.visible-lg.visible-md {
+ display: table-row !important;
+ }
+ th.visible-lg.visible-md,
+ td.visible-lg.visible-md {
+ display: table-cell !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .visible-lg {
+ display: block !important;
+ }
+ tr.visible-lg {
+ display: table-row !important;
+ }
+ th.visible-lg,
+ td.visible-lg {
+ display: table-cell !important;
+ }
+}
+
+.hidden-xs {
+ display: block !important;
+}
+
+tr.hidden-xs {
+ display: table-row !important;
+}
+
+th.hidden-xs,
+td.hidden-xs {
+ display: table-cell !important;
+}
+
+@media (max-width: 767px) {
+ .hidden-xs {
+ display: none !important;
+ }
+ tr.hidden-xs {
+ display: none !important;
+ }
+ th.hidden-xs,
+ td.hidden-xs {
+ display: none !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .hidden-xs.hidden-sm {
+ display: none !important;
+ }
+ tr.hidden-xs.hidden-sm {
+ display: none !important;
+ }
+ th.hidden-xs.hidden-sm,
+ td.hidden-xs.hidden-sm {
+ display: none !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .hidden-xs.hidden-md {
+ display: none !important;
+ }
+ tr.hidden-xs.hidden-md {
+ display: none !important;
+ }
+ th.hidden-xs.hidden-md,
+ td.hidden-xs.hidden-md {
+ display: none !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .hidden-xs.hidden-lg {
+ display: none !important;
+ }
+ tr.hidden-xs.hidden-lg {
+ display: none !important;
+ }
+ th.hidden-xs.hidden-lg,
+ td.hidden-xs.hidden-lg {
+ display: none !important;
+ }
+}
+
+.hidden-sm {
+ display: block !important;
+}
+
+tr.hidden-sm {
+ display: table-row !important;
+}
+
+th.hidden-sm,
+td.hidden-sm {
+ display: table-cell !important;
+}
+
+@media (max-width: 767px) {
+ .hidden-sm.hidden-xs {
+ display: none !important;
+ }
+ tr.hidden-sm.hidden-xs {
+ display: none !important;
+ }
+ th.hidden-sm.hidden-xs,
+ td.hidden-sm.hidden-xs {
+ display: none !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .hidden-sm {
+ display: none !important;
+ }
+ tr.hidden-sm {
+ display: none !important;
+ }
+ th.hidden-sm,
+ td.hidden-sm {
+ display: none !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .hidden-sm.hidden-md {
+ display: none !important;
+ }
+ tr.hidden-sm.hidden-md {
+ display: none !important;
+ }
+ th.hidden-sm.hidden-md,
+ td.hidden-sm.hidden-md {
+ display: none !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .hidden-sm.hidden-lg {
+ display: none !important;
+ }
+ tr.hidden-sm.hidden-lg {
+ display: none !important;
+ }
+ th.hidden-sm.hidden-lg,
+ td.hidden-sm.hidden-lg {
+ display: none !important;
+ }
+}
+
+.hidden-md {
+ display: block !important;
+}
+
+tr.hidden-md {
+ display: table-row !important;
+}
+
+th.hidden-md,
+td.hidden-md {
+ display: table-cell !important;
+}
+
+@media (max-width: 767px) {
+ .hidden-md.hidden-xs {
+ display: none !important;
+ }
+ tr.hidden-md.hidden-xs {
+ display: none !important;
+ }
+ th.hidden-md.hidden-xs,
+ td.hidden-md.hidden-xs {
+ display: none !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .hidden-md.hidden-sm {
+ display: none !important;
+ }
+ tr.hidden-md.hidden-sm {
+ display: none !important;
+ }
+ th.hidden-md.hidden-sm,
+ td.hidden-md.hidden-sm {
+ display: none !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .hidden-md {
+ display: none !important;
+ }
+ tr.hidden-md {
+ display: none !important;
+ }
+ th.hidden-md,
+ td.hidden-md {
+ display: none !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .hidden-md.hidden-lg {
+ display: none !important;
+ }
+ tr.hidden-md.hidden-lg {
+ display: none !important;
+ }
+ th.hidden-md.hidden-lg,
+ td.hidden-md.hidden-lg {
+ display: none !important;
+ }
+}
+
+.hidden-lg {
+ display: block !important;
+}
+
+tr.hidden-lg {
+ display: table-row !important;
+}
+
+th.hidden-lg,
+td.hidden-lg {
+ display: table-cell !important;
+}
+
+@media (max-width: 767px) {
+ .hidden-lg.hidden-xs {
+ display: none !important;
+ }
+ tr.hidden-lg.hidden-xs {
+ display: none !important;
+ }
+ th.hidden-lg.hidden-xs,
+ td.hidden-lg.hidden-xs {
+ display: none !important;
+ }
+}
+
+@media (min-width: 768px) and (max-width: 991px) {
+ .hidden-lg.hidden-sm {
+ display: none !important;
+ }
+ tr.hidden-lg.hidden-sm {
+ display: none !important;
+ }
+ th.hidden-lg.hidden-sm,
+ td.hidden-lg.hidden-sm {
+ display: none !important;
+ }
+}
+
+@media (min-width: 992px) and (max-width: 1199px) {
+ .hidden-lg.hidden-md {
+ display: none !important;
+ }
+ tr.hidden-lg.hidden-md {
+ display: none !important;
+ }
+ th.hidden-lg.hidden-md,
+ td.hidden-lg.hidden-md {
+ display: none !important;
+ }
+}
+
+@media (min-width: 1200px) {
+ .hidden-lg {
+ display: none !important;
+ }
+ tr.hidden-lg {
+ display: none !important;
+ }
+ th.hidden-lg,
+ td.hidden-lg {
+ display: none !important;
+ }
+}
+
+.visible-print {
+ display: none !important;
+}
+
+tr.visible-print {
+ display: none !important;
+}
+
+th.visible-print,
+td.visible-print {
+ display: none !important;
+}
+
+@media print {
+ .visible-print {
+ display: block !important;
+ }
+ tr.visible-print {
+ display: table-row !important;
+ }
+ th.visible-print,
+ td.visible-print {
+ display: table-cell !important;
+ }
+ .hidden-print {
+ display: none !important;
+ }
+ tr.hidden-print {
+ display: none !important;
+ }
+ th.hidden-print,
+ td.hidden-print {
+ display: none !important;
+ }
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.min.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.min.css
new file mode 100644
index 00000000000..a553c4f5e08
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/css/bootstrap.min.css
@@ -0,0 +1,9 @@
+/*!
+ * Bootstrap v3.0.0
+ *
+ * Copyright 2013 Twitter, Inc
+ * Licensed under the Apache License v2.0
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.js
new file mode 100644
index 00000000000..2c64257146c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.js
@@ -0,0 +1,1999 @@
+/**
+* bootstrap.js v3.0.0 by @fat and @mdo
+* Copyright 2013 Twitter Inc.
+* http://www.apache.org/licenses/LICENSE-2.0
+*/
+if (!jQuery) { throw new Error("Bootstrap requires jQuery") }
+
+/* ========================================================================
+ * Bootstrap: transition.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#transitions
+ * ========================================================================
+ * Copyright 2013 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // CSS TRANSITION SUPPORT (Shoutout: http://www.modernizr.com/)
+ // ============================================================
+
+ function transitionEnd() {
+ var el = document.createElement('bootstrap')
+
+ var transEndEventNames = {
+ 'WebkitTransition' : 'webkitTransitionEnd'
+ , 'MozTransition' : 'transitionend'
+ , 'OTransition' : 'oTransitionEnd otransitionend'
+ , 'transition' : 'transitionend'
+ }
+
+ for (var name in transEndEventNames) {
+ if (el.style[name] !== undefined) {
+ return { end: transEndEventNames[name] }
+ }
+ }
+ }
+
+ // http://blog.alexmaccaw.com/css-transitions
+ $.fn.emulateTransitionEnd = function (duration) {
+ var called = false, $el = this
+ $(this).one($.support.transition.end, function () { called = true })
+ var callback = function () { if (!called) $($el).trigger($.support.transition.end) }
+ setTimeout(callback, duration)
+ return this
+ }
+
+ $(function () {
+ $.support.transition = transitionEnd()
+ })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: alert.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#alerts
+ * ========================================================================
+ * Copyright 2013 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // ALERT CLASS DEFINITION
+ // ======================
+
+ var dismiss = '[data-dismiss="alert"]'
+ var Alert = function (el) {
+ $(el).on('click', dismiss, this.close)
+ }
+
+ Alert.prototype.close = function (e) {
+ var $this = $(this)
+ var selector = $this.attr('data-target')
+
+ if (!selector) {
+ selector = $this.attr('href')
+ selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') // strip for ie7
+ }
+
+ var $parent = $(selector)
+
+ if (e) e.preventDefault()
+
+ if (!$parent.length) {
+ $parent = $this.hasClass('alert') ? $this : $this.parent()
+ }
+
+ $parent.trigger(e = $.Event('close.bs.alert'))
+
+ if (e.isDefaultPrevented()) return
+
+ $parent.removeClass('in')
+
+ function removeElement() {
+ $parent.trigger('closed.bs.alert').remove()
+ }
+
+ $.support.transition && $parent.hasClass('fade') ?
+ $parent
+ .one($.support.transition.end, removeElement)
+ .emulateTransitionEnd(150) :
+ removeElement()
+ }
+
+
+ // ALERT PLUGIN DEFINITION
+ // =======================
+
+ var old = $.fn.alert
+
+ $.fn.alert = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.alert')
+
+ if (!data) $this.data('bs.alert', (data = new Alert(this)))
+ if (typeof option == 'string') data[option].call($this)
+ })
+ }
+
+ $.fn.alert.Constructor = Alert
+
+
+ // ALERT NO CONFLICT
+ // =================
+
+ $.fn.alert.noConflict = function () {
+ $.fn.alert = old
+ return this
+ }
+
+
+ // ALERT DATA-API
+ // ==============
+
+ $(document).on('click.bs.alert.data-api', dismiss, Alert.prototype.close)
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: button.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#buttons
+ * ========================================================================
+ * Copyright 2013 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // BUTTON PUBLIC CLASS DEFINITION
+ // ==============================
+
+ var Button = function (element, options) {
+ this.$element = $(element)
+ this.options = $.extend({}, Button.DEFAULTS, options)
+ }
+
+ Button.DEFAULTS = {
+ loadingText: 'loading...'
+ }
+
+ Button.prototype.setState = function (state) {
+ var d = 'disabled'
+ var $el = this.$element
+ var val = $el.is('input') ? 'val' : 'html'
+ var data = $el.data()
+
+ state = state + 'Text'
+
+ if (!data.resetText) $el.data('resetText', $el[val]())
+
+ $el[val](data[state] || this.options[state])
+
+ // push to event loop to allow forms to submit
+ setTimeout(function () {
+ state == 'loadingText' ?
+ $el.addClass(d).attr(d, d) :
+ $el.removeClass(d).removeAttr(d);
+ }, 0)
+ }
+
+ Button.prototype.toggle = function () {
+ var $parent = this.$element.closest('[data-toggle="buttons"]')
+
+ if ($parent.length) {
+ var $input = this.$element.find('input')
+ .prop('checked', !this.$element.hasClass('active'))
+ .trigger('change')
+ if ($input.prop('type') === 'radio') $parent.find('.active').removeClass('active')
+ }
+
+ this.$element.toggleClass('active')
+ }
+
+
+ // BUTTON PLUGIN DEFINITION
+ // ========================
+
+ var old = $.fn.button
+
+ $.fn.button = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.button')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.button', (data = new Button(this, options)))
+
+ if (option == 'toggle') data.toggle()
+ else if (option) data.setState(option)
+ })
+ }
+
+ $.fn.button.Constructor = Button
+
+
+ // BUTTON NO CONFLICT
+ // ==================
+
+ $.fn.button.noConflict = function () {
+ $.fn.button = old
+ return this
+ }
+
+
+ // BUTTON DATA-API
+ // ===============
+
+ $(document).on('click.bs.button.data-api', '[data-toggle^=button]', function (e) {
+ var $btn = $(e.target)
+ if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn')
+ $btn.button('toggle')
+ e.preventDefault()
+ })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: carousel.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#carousel
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // CAROUSEL CLASS DEFINITION
+ // =========================
+
+ var Carousel = function (element, options) {
+ this.$element = $(element)
+ this.$indicators = this.$element.find('.carousel-indicators')
+ this.options = options
+ this.paused =
+ this.sliding =
+ this.interval =
+ this.$active =
+ this.$items = null
+
+ this.options.pause == 'hover' && this.$element
+ .on('mouseenter', $.proxy(this.pause, this))
+ .on('mouseleave', $.proxy(this.cycle, this))
+ }
+
+ Carousel.DEFAULTS = {
+ interval: 5000
+ , pause: 'hover'
+ , wrap: true
+ }
+
+ Carousel.prototype.cycle = function (e) {
+ e || (this.paused = false)
+
+ this.interval && clearInterval(this.interval)
+
+ this.options.interval
+ && !this.paused
+ && (this.interval = setInterval($.proxy(this.next, this), this.options.interval))
+
+ return this
+ }
+
+ Carousel.prototype.getActiveIndex = function () {
+ this.$active = this.$element.find('.item.active')
+ this.$items = this.$active.parent().children()
+
+ return this.$items.index(this.$active)
+ }
+
+ Carousel.prototype.to = function (pos) {
+ var that = this
+ var activeIndex = this.getActiveIndex()
+
+ if (pos > (this.$items.length - 1) || pos < 0) return
+
+ if (this.sliding) return this.$element.one('slid', function () { that.to(pos) })
+ if (activeIndex == pos) return this.pause().cycle()
+
+ return this.slide(pos > activeIndex ? 'next' : 'prev', $(this.$items[pos]))
+ }
+
+ Carousel.prototype.pause = function (e) {
+ e || (this.paused = true)
+
+ if (this.$element.find('.next, .prev').length && $.support.transition.end) {
+ this.$element.trigger($.support.transition.end)
+ this.cycle(true)
+ }
+
+ this.interval = clearInterval(this.interval)
+
+ return this
+ }
+
+ Carousel.prototype.next = function () {
+ if (this.sliding) return
+ return this.slide('next')
+ }
+
+ Carousel.prototype.prev = function () {
+ if (this.sliding) return
+ return this.slide('prev')
+ }
+
+ Carousel.prototype.slide = function (type, next) {
+ var $active = this.$element.find('.item.active')
+ var $next = next || $active[type]()
+ var isCycling = this.interval
+ var direction = type == 'next' ? 'left' : 'right'
+ var fallback = type == 'next' ? 'first' : 'last'
+ var that = this
+
+ if (!$next.length) {
+ if (!this.options.wrap) return
+ $next = this.$element.find('.item')[fallback]()
+ }
+
+ this.sliding = true
+
+ isCycling && this.pause()
+
+ var e = $.Event('slide.bs.carousel', { relatedTarget: $next[0], direction: direction })
+
+ if ($next.hasClass('active')) return
+
+ if (this.$indicators.length) {
+ this.$indicators.find('.active').removeClass('active')
+ this.$element.one('slid', function () {
+ var $nextIndicator = $(that.$indicators.children()[that.getActiveIndex()])
+ $nextIndicator && $nextIndicator.addClass('active')
+ })
+ }
+
+ if ($.support.transition && this.$element.hasClass('slide')) {
+ this.$element.trigger(e)
+ if (e.isDefaultPrevented()) return
+ $next.addClass(type)
+ $next[0].offsetWidth // force reflow
+ $active.addClass(direction)
+ $next.addClass(direction)
+ $active
+ .one($.support.transition.end, function () {
+ $next.removeClass([type, direction].join(' ')).addClass('active')
+ $active.removeClass(['active', direction].join(' '))
+ that.sliding = false
+ setTimeout(function () { that.$element.trigger('slid') }, 0)
+ })
+ .emulateTransitionEnd(600)
+ } else {
+ this.$element.trigger(e)
+ if (e.isDefaultPrevented()) return
+ $active.removeClass('active')
+ $next.addClass('active')
+ this.sliding = false
+ this.$element.trigger('slid')
+ }
+
+ isCycling && this.cycle()
+
+ return this
+ }
+
+
+ // CAROUSEL PLUGIN DEFINITION
+ // ==========================
+
+ var old = $.fn.carousel
+
+ $.fn.carousel = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.carousel')
+ var options = $.extend({}, Carousel.DEFAULTS, $this.data(), typeof option == 'object' && option)
+ var action = typeof option == 'string' ? option : options.slide
+
+ if (!data) $this.data('bs.carousel', (data = new Carousel(this, options)))
+ if (typeof option == 'number') data.to(option)
+ else if (action) data[action]()
+ else if (options.interval) data.pause().cycle()
+ })
+ }
+
+ $.fn.carousel.Constructor = Carousel
+
+
+ // CAROUSEL NO CONFLICT
+ // ====================
+
+ $.fn.carousel.noConflict = function () {
+ $.fn.carousel = old
+ return this
+ }
+
+
+ // CAROUSEL DATA-API
+ // =================
+
+ $(document).on('click.bs.carousel.data-api', '[data-slide], [data-slide-to]', function (e) {
+ var $this = $(this), href
+ var $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
+ var options = $.extend({}, $target.data(), $this.data())
+ var slideIndex = $this.attr('data-slide-to')
+ if (slideIndex) options.interval = false
+
+ $target.carousel(options)
+
+ if (slideIndex = $this.attr('data-slide-to')) {
+ $target.data('bs.carousel').to(slideIndex)
+ }
+
+ e.preventDefault()
+ })
+
+ $(window).on('load', function () {
+ $('[data-ride="carousel"]').each(function () {
+ var $carousel = $(this)
+ $carousel.carousel($carousel.data())
+ })
+ })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: collapse.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#collapse
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // COLLAPSE PUBLIC CLASS DEFINITION
+ // ================================
+
+ var Collapse = function (element, options) {
+ this.$element = $(element)
+ this.options = $.extend({}, Collapse.DEFAULTS, options)
+ this.transitioning = null
+
+ if (this.options.parent) this.$parent = $(this.options.parent)
+ if (this.options.toggle) this.toggle()
+ }
+
+ Collapse.DEFAULTS = {
+ toggle: true
+ }
+
+ Collapse.prototype.dimension = function () {
+ var hasWidth = this.$element.hasClass('width')
+ return hasWidth ? 'width' : 'height'
+ }
+
+ Collapse.prototype.show = function () {
+ if (this.transitioning || this.$element.hasClass('in')) return
+
+ var startEvent = $.Event('show.bs.collapse')
+ this.$element.trigger(startEvent)
+ if (startEvent.isDefaultPrevented()) return
+
+ var actives = this.$parent && this.$parent.find('> .panel > .in')
+
+ if (actives && actives.length) {
+ var hasData = actives.data('bs.collapse')
+ if (hasData && hasData.transitioning) return
+ actives.collapse('hide')
+ hasData || actives.data('bs.collapse', null)
+ }
+
+ var dimension = this.dimension()
+
+ this.$element
+ .removeClass('collapse')
+ .addClass('collapsing')
+ [dimension](0)
+
+ this.transitioning = 1
+
+ var complete = function () {
+ this.$element
+ .removeClass('collapsing')
+ .addClass('in')
+ [dimension]('auto')
+ this.transitioning = 0
+ this.$element.trigger('shown.bs.collapse')
+ }
+
+ if (!$.support.transition) return complete.call(this)
+
+ var scrollSize = $.camelCase(['scroll', dimension].join('-'))
+
+ this.$element
+ .one($.support.transition.end, $.proxy(complete, this))
+ .emulateTransitionEnd(350)
+ [dimension](this.$element[0][scrollSize])
+ }
+
+ Collapse.prototype.hide = function () {
+ if (this.transitioning || !this.$element.hasClass('in')) return
+
+ var startEvent = $.Event('hide.bs.collapse')
+ this.$element.trigger(startEvent)
+ if (startEvent.isDefaultPrevented()) return
+
+ var dimension = this.dimension()
+
+ this.$element
+ [dimension](this.$element[dimension]())
+ [0].offsetHeight
+
+ this.$element
+ .addClass('collapsing')
+ .removeClass('collapse')
+ .removeClass('in')
+
+ this.transitioning = 1
+
+ var complete = function () {
+ this.transitioning = 0
+ this.$element
+ .trigger('hidden.bs.collapse')
+ .removeClass('collapsing')
+ .addClass('collapse')
+ }
+
+ if (!$.support.transition) return complete.call(this)
+
+ this.$element
+ [dimension](0)
+ .one($.support.transition.end, $.proxy(complete, this))
+ .emulateTransitionEnd(350)
+ }
+
+ Collapse.prototype.toggle = function () {
+ this[this.$element.hasClass('in') ? 'hide' : 'show']()
+ }
+
+
+ // COLLAPSE PLUGIN DEFINITION
+ // ==========================
+
+ var old = $.fn.collapse
+
+ $.fn.collapse = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.collapse')
+ var options = $.extend({}, Collapse.DEFAULTS, $this.data(), typeof option == 'object' && option)
+
+ if (!data) $this.data('bs.collapse', (data = new Collapse(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ $.fn.collapse.Constructor = Collapse
+
+
+ // COLLAPSE NO CONFLICT
+ // ====================
+
+ $.fn.collapse.noConflict = function () {
+ $.fn.collapse = old
+ return this
+ }
+
+
+ // COLLAPSE DATA-API
+ // =================
+
+ $(document).on('click.bs.collapse.data-api', '[data-toggle=collapse]', function (e) {
+ var $this = $(this), href
+ var target = $this.attr('data-target')
+ || e.preventDefault()
+ || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') //strip for ie7
+ var $target = $(target)
+ var data = $target.data('bs.collapse')
+ var option = data ? 'toggle' : $this.data()
+ var parent = $this.attr('data-parent')
+ var $parent = parent && $(parent)
+
+ if (!data || !data.transitioning) {
+ if ($parent) $parent.find('[data-toggle=collapse][data-parent="' + parent + '"]').not($this).addClass('collapsed')
+ $this[$target.hasClass('in') ? 'addClass' : 'removeClass']('collapsed')
+ }
+
+ $target.collapse(option)
+ })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: dropdown.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#dropdowns
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // DROPDOWN CLASS DEFINITION
+ // =========================
+
+ var backdrop = '.dropdown-backdrop'
+ var toggle = '[data-toggle=dropdown]'
+ var Dropdown = function (element) {
+ var $el = $(element).on('click.bs.dropdown', this.toggle)
+ }
+
+ Dropdown.prototype.toggle = function (e) {
+ var $this = $(this)
+
+ if ($this.is('.disabled, :disabled')) return
+
+ var $parent = getParent($this)
+ var isActive = $parent.hasClass('open')
+
+ clearMenus()
+
+ if (!isActive) {
+ if ('ontouchstart' in document.documentElement && !$parent.closest('.navbar-nav').length) {
+ // if mobile we we use a backdrop because click events don't delegate
+ $('<div class="dropdown-backdrop"/>').insertAfter($(this)).on('click', clearMenus)
+ }
+
+ $parent.trigger(e = $.Event('show.bs.dropdown'))
+
+ if (e.isDefaultPrevented()) return
+
+ $parent
+ .toggleClass('open')
+ .trigger('shown.bs.dropdown')
+
+ $this.focus()
+ }
+
+ return false
+ }
+
+ Dropdown.prototype.keydown = function (e) {
+ if (!/(38|40|27)/.test(e.keyCode)) return
+
+ var $this = $(this)
+
+ e.preventDefault()
+ e.stopPropagation()
+
+ if ($this.is('.disabled, :disabled')) return
+
+ var $parent = getParent($this)
+ var isActive = $parent.hasClass('open')
+
+ if (!isActive || (isActive && e.keyCode == 27)) {
+ if (e.which == 27) $parent.find(toggle).focus()
+ return $this.click()
+ }
+
+ var $items = $('[role=menu] li:not(.divider):visible a', $parent)
+
+ if (!$items.length) return
+
+ var index = $items.index($items.filter(':focus'))
+
+ if (e.keyCode == 38 && index > 0) index-- // up
+ if (e.keyCode == 40 && index < $items.length - 1) index++ // down
+ if (!~index) index=0
+
+ $items.eq(index).focus()
+ }
+
+ function clearMenus() {
+ $(backdrop).remove()
+ $(toggle).each(function (e) {
+ var $parent = getParent($(this))
+ if (!$parent.hasClass('open')) return
+ $parent.trigger(e = $.Event('hide.bs.dropdown'))
+ if (e.isDefaultPrevented()) return
+ $parent.removeClass('open').trigger('hidden.bs.dropdown')
+ })
+ }
+
+ function getParent($this) {
+ var selector = $this.attr('data-target')
+
+ if (!selector) {
+ selector = $this.attr('href')
+ selector = selector && /#/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
+ }
+
+ var $parent = selector && $(selector)
+
+ return $parent && $parent.length ? $parent : $this.parent()
+ }
+
+
+ // DROPDOWN PLUGIN DEFINITION
+ // ==========================
+
+ var old = $.fn.dropdown
+
+ $.fn.dropdown = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('dropdown')
+
+ if (!data) $this.data('dropdown', (data = new Dropdown(this)))
+ if (typeof option == 'string') data[option].call($this)
+ })
+ }
+
+ $.fn.dropdown.Constructor = Dropdown
+
+
+ // DROPDOWN NO CONFLICT
+ // ====================
+
+ $.fn.dropdown.noConflict = function () {
+ $.fn.dropdown = old
+ return this
+ }
+
+
+ // APPLY TO STANDARD DROPDOWN ELEMENTS
+ // ===================================
+
+ $(document)
+ .on('click.bs.dropdown.data-api', clearMenus)
+ .on('click.bs.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() })
+ .on('click.bs.dropdown.data-api' , toggle, Dropdown.prototype.toggle)
+ .on('keydown.bs.dropdown.data-api', toggle + ', [role=menu]' , Dropdown.prototype.keydown)
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: modal.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#modals
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // MODAL CLASS DEFINITION
+ // ======================
+
+ var Modal = function (element, options) {
+ this.options = options
+ this.$element = $(element)
+ this.$backdrop =
+ this.isShown = null
+
+ if (this.options.remote) this.$element.load(this.options.remote)
+ }
+
+ Modal.DEFAULTS = {
+ backdrop: true
+ , keyboard: true
+ , show: true
+ }
+
+ Modal.prototype.toggle = function (_relatedTarget) {
+ return this[!this.isShown ? 'show' : 'hide'](_relatedTarget)
+ }
+
+ Modal.prototype.show = function (_relatedTarget) {
+ var that = this
+ var e = $.Event('show.bs.modal', { relatedTarget: _relatedTarget })
+
+ this.$element.trigger(e)
+
+ if (this.isShown || e.isDefaultPrevented()) return
+
+ this.isShown = true
+
+ this.escape()
+
+ this.$element.on('click.dismiss.modal', '[data-dismiss="modal"]', $.proxy(this.hide, this))
+
+ this.backdrop(function () {
+ var transition = $.support.transition && that.$element.hasClass('fade')
+
+ if (!that.$element.parent().length) {
+ that.$element.appendTo(document.body) // don't move modals dom position
+ }
+
+ that.$element.show()
+
+ if (transition) {
+ that.$element[0].offsetWidth // force reflow
+ }
+
+ that.$element
+ .addClass('in')
+ .attr('aria-hidden', false)
+
+ that.enforceFocus()
+
+ var e = $.Event('shown.bs.modal', { relatedTarget: _relatedTarget })
+
+ transition ?
+ that.$element.find('.modal-dialog') // wait for modal to slide in
+ .one($.support.transition.end, function () {
+ that.$element.focus().trigger(e)
+ })
+ .emulateTransitionEnd(300) :
+ that.$element.focus().trigger(e)
+ })
+ }
+
+ Modal.prototype.hide = function (e) {
+ if (e) e.preventDefault()
+
+ e = $.Event('hide.bs.modal')
+
+ this.$element.trigger(e)
+
+ if (!this.isShown || e.isDefaultPrevented()) return
+
+ this.isShown = false
+
+ this.escape()
+
+ $(document).off('focusin.bs.modal')
+
+ this.$element
+ .removeClass('in')
+ .attr('aria-hidden', true)
+ .off('click.dismiss.modal')
+
+ $.support.transition && this.$element.hasClass('fade') ?
+ this.$element
+ .one($.support.transition.end, $.proxy(this.hideModal, this))
+ .emulateTransitionEnd(300) :
+ this.hideModal()
+ }
+
+ Modal.prototype.enforceFocus = function () {
+ $(document)
+ .off('focusin.bs.modal') // guard against infinite focus loop
+ .on('focusin.bs.modal', $.proxy(function (e) {
+ if (this.$element[0] !== e.target && !this.$element.has(e.target).length) {
+ this.$element.focus()
+ }
+ }, this))
+ }
+
+ Modal.prototype.escape = function () {
+ if (this.isShown && this.options.keyboard) {
+ this.$element.on('keyup.dismiss.bs.modal', $.proxy(function (e) {
+ e.which == 27 && this.hide()
+ }, this))
+ } else if (!this.isShown) {
+ this.$element.off('keyup.dismiss.bs.modal')
+ }
+ }
+
+ Modal.prototype.hideModal = function () {
+ var that = this
+ this.$element.hide()
+ this.backdrop(function () {
+ that.removeBackdrop()
+ that.$element.trigger('hidden.bs.modal')
+ })
+ }
+
+ Modal.prototype.removeBackdrop = function () {
+ this.$backdrop && this.$backdrop.remove()
+ this.$backdrop = null
+ }
+
+ Modal.prototype.backdrop = function (callback) {
+ var that = this
+ var animate = this.$element.hasClass('fade') ? 'fade' : ''
+
+ if (this.isShown && this.options.backdrop) {
+ var doAnimate = $.support.transition && animate
+
+ this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />')
+ .appendTo(document.body)
+
+ this.$element.on('click.dismiss.modal', $.proxy(function (e) {
+ if (e.target !== e.currentTarget) return
+ this.options.backdrop == 'static'
+ ? this.$element[0].focus.call(this.$element[0])
+ : this.hide.call(this)
+ }, this))
+
+ if (doAnimate) this.$backdrop[0].offsetWidth // force reflow
+
+ this.$backdrop.addClass('in')
+
+ if (!callback) return
+
+ doAnimate ?
+ this.$backdrop
+ .one($.support.transition.end, callback)
+ .emulateTransitionEnd(150) :
+ callback()
+
+ } else if (!this.isShown && this.$backdrop) {
+ this.$backdrop.removeClass('in')
+
+ $.support.transition && this.$element.hasClass('fade')?
+ this.$backdrop
+ .one($.support.transition.end, callback)
+ .emulateTransitionEnd(150) :
+ callback()
+
+ } else if (callback) {
+ callback()
+ }
+ }
+
+
+ // MODAL PLUGIN DEFINITION
+ // =======================
+
+ var old = $.fn.modal
+
+ $.fn.modal = function (option, _relatedTarget) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.modal')
+ var options = $.extend({}, Modal.DEFAULTS, $this.data(), typeof option == 'object' && option)
+
+ if (!data) $this.data('bs.modal', (data = new Modal(this, options)))
+ if (typeof option == 'string') data[option](_relatedTarget)
+ else if (options.show) data.show(_relatedTarget)
+ })
+ }
+
+ $.fn.modal.Constructor = Modal
+
+
+ // MODAL NO CONFLICT
+ // =================
+
+ $.fn.modal.noConflict = function () {
+ $.fn.modal = old
+ return this
+ }
+
+
+ // MODAL DATA-API
+ // ==============
+
+ $(document).on('click.bs.modal.data-api', '[data-toggle="modal"]', function (e) {
+ var $this = $(this)
+ var href = $this.attr('href')
+ var $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) //strip for ie7
+ var option = $target.data('modal') ? 'toggle' : $.extend({ remote: !/#/.test(href) && href }, $target.data(), $this.data())
+
+ e.preventDefault()
+
+ $target
+ .modal(option, this)
+ .one('hide', function () {
+ $this.is(':visible') && $this.focus()
+ })
+ })
+
+ $(document)
+ .on('show.bs.modal', '.modal', function () { $(document.body).addClass('modal-open') })
+ .on('hidden.bs.modal', '.modal', function () { $(document.body).removeClass('modal-open') })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: tooltip.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#tooltip
+ * Inspired by the original jQuery.tipsy by Jason Frame
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // TOOLTIP PUBLIC CLASS DEFINITION
+ // ===============================
+
+ var Tooltip = function (element, options) {
+ this.type =
+ this.options =
+ this.enabled =
+ this.timeout =
+ this.hoverState =
+ this.$element = null
+
+ this.init('tooltip', element, options)
+ }
+
+ Tooltip.DEFAULTS = {
+ animation: true
+ , placement: 'top'
+ , selector: false
+ , template: '<div class="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>'
+ , trigger: 'hover focus'
+ , title: ''
+ , delay: 0
+ , html: false
+ , container: false
+ }
+
+ Tooltip.prototype.init = function (type, element, options) {
+ this.enabled = true
+ this.type = type
+ this.$element = $(element)
+ this.options = this.getOptions(options)
+
+ var triggers = this.options.trigger.split(' ')
+
+ for (var i = triggers.length; i--;) {
+ var trigger = triggers[i]
+
+ if (trigger == 'click') {
+ this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this))
+ } else if (trigger != 'manual') {
+ var eventIn = trigger == 'hover' ? 'mouseenter' : 'focus'
+ var eventOut = trigger == 'hover' ? 'mouseleave' : 'blur'
+
+ this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this))
+ this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this))
+ }
+ }
+
+ this.options.selector ?
+ (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) :
+ this.fixTitle()
+ }
+
+ Tooltip.prototype.getDefaults = function () {
+ return Tooltip.DEFAULTS
+ }
+
+ Tooltip.prototype.getOptions = function (options) {
+ options = $.extend({}, this.getDefaults(), this.$element.data(), options)
+
+ if (options.delay && typeof options.delay == 'number') {
+ options.delay = {
+ show: options.delay
+ , hide: options.delay
+ }
+ }
+
+ return options
+ }
+
+ Tooltip.prototype.getDelegateOptions = function () {
+ var options = {}
+ var defaults = this.getDefaults()
+
+ this._options && $.each(this._options, function (key, value) {
+ if (defaults[key] != value) options[key] = value
+ })
+
+ return options
+ }
+
+ Tooltip.prototype.enter = function (obj) {
+ var self = obj instanceof this.constructor ?
+ obj : $(obj.currentTarget)[this.type](this.getDelegateOptions()).data('bs.' + this.type)
+
+ clearTimeout(self.timeout)
+
+ self.hoverState = 'in'
+
+ if (!self.options.delay || !self.options.delay.show) return self.show()
+
+ self.timeout = setTimeout(function () {
+ if (self.hoverState == 'in') self.show()
+ }, self.options.delay.show)
+ }
+
+ Tooltip.prototype.leave = function (obj) {
+ var self = obj instanceof this.constructor ?
+ obj : $(obj.currentTarget)[this.type](this.getDelegateOptions()).data('bs.' + this.type)
+
+ clearTimeout(self.timeout)
+
+ self.hoverState = 'out'
+
+ if (!self.options.delay || !self.options.delay.hide) return self.hide()
+
+ self.timeout = setTimeout(function () {
+ if (self.hoverState == 'out') self.hide()
+ }, self.options.delay.hide)
+ }
+
+ Tooltip.prototype.show = function () {
+ var e = $.Event('show.bs.'+ this.type)
+
+ if (this.hasContent() && this.enabled) {
+ this.$element.trigger(e)
+
+ if (e.isDefaultPrevented()) return
+
+ var $tip = this.tip()
+
+ this.setContent()
+
+ if (this.options.animation) $tip.addClass('fade')
+
+ var placement = typeof this.options.placement == 'function' ?
+ this.options.placement.call(this, $tip[0], this.$element[0]) :
+ this.options.placement
+
+ var autoToken = /\s?auto?\s?/i
+ var autoPlace = autoToken.test(placement)
+ if (autoPlace) placement = placement.replace(autoToken, '') || 'top'
+
+ $tip
+ .detach()
+ .css({ top: 0, left: 0, display: 'block' })
+ .addClass(placement)
+
+ this.options.container ? $tip.appendTo(this.options.container) : $tip.insertAfter(this.$element)
+
+ var pos = this.getPosition()
+ var actualWidth = $tip[0].offsetWidth
+ var actualHeight = $tip[0].offsetHeight
+
+ if (autoPlace) {
+ var $parent = this.$element.parent()
+
+ var orgPlacement = placement
+ var docScroll = document.documentElement.scrollTop || document.body.scrollTop
+ var parentWidth = this.options.container == 'body' ? window.innerWidth : $parent.outerWidth()
+ var parentHeight = this.options.container == 'body' ? window.innerHeight : $parent.outerHeight()
+ var parentLeft = this.options.container == 'body' ? 0 : $parent.offset().left
+
+ placement = placement == 'bottom' && pos.top + pos.height + actualHeight - docScroll > parentHeight ? 'top' :
+ placement == 'top' && pos.top - docScroll - actualHeight < 0 ? 'bottom' :
+ placement == 'right' && pos.right + actualWidth > parentWidth ? 'left' :
+ placement == 'left' && pos.left - actualWidth < parentLeft ? 'right' :
+ placement
+
+ $tip
+ .removeClass(orgPlacement)
+ .addClass(placement)
+ }
+
+ var calculatedOffset = this.getCalculatedOffset(placement, pos, actualWidth, actualHeight)
+
+ this.applyPlacement(calculatedOffset, placement)
+ this.$element.trigger('shown.bs.' + this.type)
+ }
+ }
+
+ Tooltip.prototype.applyPlacement = function(offset, placement) {
+ var replace
+ var $tip = this.tip()
+ var width = $tip[0].offsetWidth
+ var height = $tip[0].offsetHeight
+
+ // manually read margins because getBoundingClientRect includes difference
+ var marginTop = parseInt($tip.css('margin-top'), 10)
+ var marginLeft = parseInt($tip.css('margin-left'), 10)
+
+ // we must check for NaN for ie 8/9
+ if (isNaN(marginTop)) marginTop = 0
+ if (isNaN(marginLeft)) marginLeft = 0
+
+ offset.top = offset.top + marginTop
+ offset.left = offset.left + marginLeft
+
+ $tip
+ .offset(offset)
+ .addClass('in')
+
+ // check to see if placing tip in new offset caused the tip to resize itself
+ var actualWidth = $tip[0].offsetWidth
+ var actualHeight = $tip[0].offsetHeight
+
+ if (placement == 'top' && actualHeight != height) {
+ replace = true
+ offset.top = offset.top + height - actualHeight
+ }
+
+ if (/bottom|top/.test(placement)) {
+ var delta = 0
+
+ if (offset.left < 0) {
+ delta = offset.left * -2
+ offset.left = 0
+
+ $tip.offset(offset)
+
+ actualWidth = $tip[0].offsetWidth
+ actualHeight = $tip[0].offsetHeight
+ }
+
+ this.replaceArrow(delta - width + actualWidth, actualWidth, 'left')
+ } else {
+ this.replaceArrow(actualHeight - height, actualHeight, 'top')
+ }
+
+ if (replace) $tip.offset(offset)
+ }
+
+ Tooltip.prototype.replaceArrow = function(delta, dimension, position) {
+ this.arrow().css(position, delta ? (50 * (1 - delta / dimension) + "%") : '')
+ }
+
+ Tooltip.prototype.setContent = function () {
+ var $tip = this.tip()
+ var title = this.getTitle()
+
+ $tip.find('.tooltip-inner')[this.options.html ? 'html' : 'text'](title)
+ $tip.removeClass('fade in top bottom left right')
+ }
+
+ Tooltip.prototype.hide = function () {
+ var that = this
+ var $tip = this.tip()
+ var e = $.Event('hide.bs.' + this.type)
+
+ function complete() {
+ if (that.hoverState != 'in') $tip.detach()
+ }
+
+ this.$element.trigger(e)
+
+ if (e.isDefaultPrevented()) return
+
+ $tip.removeClass('in')
+
+ $.support.transition && this.$tip.hasClass('fade') ?
+ $tip
+ .one($.support.transition.end, complete)
+ .emulateTransitionEnd(150) :
+ complete()
+
+ this.$element.trigger('hidden.bs.' + this.type)
+
+ return this
+ }
+
+ Tooltip.prototype.fixTitle = function () {
+ var $e = this.$element
+ if ($e.attr('title') || typeof($e.attr('data-original-title')) != 'string') {
+ $e.attr('data-original-title', $e.attr('title') || '').attr('title', '')
+ }
+ }
+
+ Tooltip.prototype.hasContent = function () {
+ return this.getTitle()
+ }
+
+ Tooltip.prototype.getPosition = function () {
+ var el = this.$element[0]
+ return $.extend({}, (typeof el.getBoundingClientRect == 'function') ? el.getBoundingClientRect() : {
+ width: el.offsetWidth
+ , height: el.offsetHeight
+ }, this.$element.offset())
+ }
+
+ Tooltip.prototype.getCalculatedOffset = function (placement, pos, actualWidth, actualHeight) {
+ return placement == 'bottom' ? { top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2 } :
+ placement == 'top' ? { top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2 } :
+ placement == 'left' ? { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth } :
+ /* placement == 'right' */ { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width }
+ }
+
+ Tooltip.prototype.getTitle = function () {
+ var title
+ var $e = this.$element
+ var o = this.options
+
+ title = $e.attr('data-original-title')
+ || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title)
+
+ return title
+ }
+
+ Tooltip.prototype.tip = function () {
+ return this.$tip = this.$tip || $(this.options.template)
+ }
+
+ Tooltip.prototype.arrow = function () {
+ return this.$arrow = this.$arrow || this.tip().find('.tooltip-arrow')
+ }
+
+ Tooltip.prototype.validate = function () {
+ if (!this.$element[0].parentNode) {
+ this.hide()
+ this.$element = null
+ this.options = null
+ }
+ }
+
+ Tooltip.prototype.enable = function () {
+ this.enabled = true
+ }
+
+ Tooltip.prototype.disable = function () {
+ this.enabled = false
+ }
+
+ Tooltip.prototype.toggleEnabled = function () {
+ this.enabled = !this.enabled
+ }
+
+ Tooltip.prototype.toggle = function (e) {
+ var self = e ? $(e.currentTarget)[this.type](this.getDelegateOptions()).data('bs.' + this.type) : this
+ self.tip().hasClass('in') ? self.leave(self) : self.enter(self)
+ }
+
+ Tooltip.prototype.destroy = function () {
+ this.hide().$element.off('.' + this.type).removeData('bs.' + this.type)
+ }
+
+
+ // TOOLTIP PLUGIN DEFINITION
+ // =========================
+
+ var old = $.fn.tooltip
+
+ $.fn.tooltip = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.tooltip')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.tooltip', (data = new Tooltip(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ $.fn.tooltip.Constructor = Tooltip
+
+
+ // TOOLTIP NO CONFLICT
+ // ===================
+
+ $.fn.tooltip.noConflict = function () {
+ $.fn.tooltip = old
+ return this
+ }
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: popover.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#popovers
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // POPOVER PUBLIC CLASS DEFINITION
+ // ===============================
+
+ var Popover = function (element, options) {
+ this.init('popover', element, options)
+ }
+
+ if (!$.fn.tooltip) throw new Error('Popover requires tooltip.js')
+
+ Popover.DEFAULTS = $.extend({} , $.fn.tooltip.Constructor.DEFAULTS, {
+ placement: 'right'
+ , trigger: 'click'
+ , content: ''
+ , template: '<div class="popover"><div class="arrow"></div><h3 class="popover-title"></h3><div class="popover-content"></div></div>'
+ })
+
+
+ // NOTE: POPOVER EXTENDS tooltip.js
+ // ================================
+
+ Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype)
+
+ Popover.prototype.constructor = Popover
+
+ Popover.prototype.getDefaults = function () {
+ return Popover.DEFAULTS
+ }
+
+ Popover.prototype.setContent = function () {
+ var $tip = this.tip()
+ var title = this.getTitle()
+ var content = this.getContent()
+
+ $tip.find('.popover-title')[this.options.html ? 'html' : 'text'](title)
+ $tip.find('.popover-content')[this.options.html ? 'html' : 'text'](content)
+
+ $tip.removeClass('fade top bottom left right in')
+
+ // IE8 doesn't accept hiding via the `:empty` pseudo selector, we have to do
+ // this manually by checking the contents.
+ if (!$tip.find('.popover-title').html()) $tip.find('.popover-title').hide()
+ }
+
+ Popover.prototype.hasContent = function () {
+ return this.getTitle() || this.getContent()
+ }
+
+ Popover.prototype.getContent = function () {
+ var $e = this.$element
+ var o = this.options
+
+ return $e.attr('data-content')
+ || (typeof o.content == 'function' ?
+ o.content.call($e[0]) :
+ o.content)
+ }
+
+ Popover.prototype.arrow = function () {
+ return this.$arrow = this.$arrow || this.tip().find('.arrow')
+ }
+
+ Popover.prototype.tip = function () {
+ if (!this.$tip) this.$tip = $(this.options.template)
+ return this.$tip
+ }
+
+
+ // POPOVER PLUGIN DEFINITION
+ // =========================
+
+ var old = $.fn.popover
+
+ $.fn.popover = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.popover')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.popover', (data = new Popover(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ $.fn.popover.Constructor = Popover
+
+
+ // POPOVER NO CONFLICT
+ // ===================
+
+ $.fn.popover.noConflict = function () {
+ $.fn.popover = old
+ return this
+ }
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: scrollspy.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#scrollspy
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // SCROLLSPY CLASS DEFINITION
+ // ==========================
+
+ function ScrollSpy(element, options) {
+ var href
+ var process = $.proxy(this.process, this)
+
+ this.$element = $(element).is('body') ? $(window) : $(element)
+ this.$body = $('body')
+ this.$scrollElement = this.$element.on('scroll.bs.scroll-spy.data-api', process)
+ this.options = $.extend({}, ScrollSpy.DEFAULTS, options)
+ this.selector = (this.options.target
+ || ((href = $(element).attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) //strip for ie7
+ || '') + ' .nav li > a'
+ this.offsets = $([])
+ this.targets = $([])
+ this.activeTarget = null
+
+ this.refresh()
+ this.process()
+ }
+
+ ScrollSpy.DEFAULTS = {
+ offset: 10
+ }
+
+ ScrollSpy.prototype.refresh = function () {
+ var offsetMethod = this.$element[0] == window ? 'offset' : 'position'
+
+ this.offsets = $([])
+ this.targets = $([])
+
+ var self = this
+ var $targets = this.$body
+ .find(this.selector)
+ .map(function () {
+ var $el = $(this)
+ var href = $el.data('target') || $el.attr('href')
+ var $href = /^#\w/.test(href) && $(href)
+
+ return ($href
+ && $href.length
+ && [[ $href[offsetMethod]().top + (!$.isWindow(self.$scrollElement.get(0)) && self.$scrollElement.scrollTop()), href ]]) || null
+ })
+ .sort(function (a, b) { return a[0] - b[0] })
+ .each(function () {
+ self.offsets.push(this[0])
+ self.targets.push(this[1])
+ })
+ }
+
+ ScrollSpy.prototype.process = function () {
+ var scrollTop = this.$scrollElement.scrollTop() + this.options.offset
+ var scrollHeight = this.$scrollElement[0].scrollHeight || this.$body[0].scrollHeight
+ var maxScroll = scrollHeight - this.$scrollElement.height()
+ var offsets = this.offsets
+ var targets = this.targets
+ var activeTarget = this.activeTarget
+ var i
+
+ if (scrollTop >= maxScroll) {
+ return activeTarget != (i = targets.last()[0]) && this.activate(i)
+ }
+
+ for (i = offsets.length; i--;) {
+ activeTarget != targets[i]
+ && scrollTop >= offsets[i]
+ && (!offsets[i + 1] || scrollTop <= offsets[i + 1])
+ && this.activate( targets[i] )
+ }
+ }
+
+ ScrollSpy.prototype.activate = function (target) {
+ this.activeTarget = target
+
+ $(this.selector)
+ .parents('.active')
+ .removeClass('active')
+
+ var selector = this.selector
+ + '[data-target="' + target + '"],'
+ + this.selector + '[href="' + target + '"]'
+
+ var active = $(selector)
+ .parents('li')
+ .addClass('active')
+
+ if (active.parent('.dropdown-menu').length) {
+ active = active
+ .closest('li.dropdown')
+ .addClass('active')
+ }
+
+ active.trigger('activate')
+ }
+
+
+ // SCROLLSPY PLUGIN DEFINITION
+ // ===========================
+
+ var old = $.fn.scrollspy
+
+ $.fn.scrollspy = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.scrollspy')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.scrollspy', (data = new ScrollSpy(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ $.fn.scrollspy.Constructor = ScrollSpy
+
+
+ // SCROLLSPY NO CONFLICT
+ // =====================
+
+ $.fn.scrollspy.noConflict = function () {
+ $.fn.scrollspy = old
+ return this
+ }
+
+
+ // SCROLLSPY DATA-API
+ // ==================
+
+ $(window).on('load', function () {
+ $('[data-spy="scroll"]').each(function () {
+ var $spy = $(this)
+ $spy.scrollspy($spy.data())
+ })
+ })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: tab.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#tabs
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // TAB CLASS DEFINITION
+ // ====================
+
+ var Tab = function (element) {
+ this.element = $(element)
+ }
+
+ Tab.prototype.show = function () {
+ var $this = this.element
+ var $ul = $this.closest('ul:not(.dropdown-menu)')
+ var selector = $this.attr('data-target')
+
+ if (!selector) {
+ selector = $this.attr('href')
+ selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') //strip for ie7
+ }
+
+ if ($this.parent('li').hasClass('active')) return
+
+ var previous = $ul.find('.active:last a')[0]
+ var e = $.Event('show.bs.tab', {
+ relatedTarget: previous
+ })
+
+ $this.trigger(e)
+
+ if (e.isDefaultPrevented()) return
+
+ var $target = $(selector)
+
+ this.activate($this.parent('li'), $ul)
+ this.activate($target, $target.parent(), function () {
+ $this.trigger({
+ type: 'shown.bs.tab'
+ , relatedTarget: previous
+ })
+ })
+ }
+
+ Tab.prototype.activate = function (element, container, callback) {
+ var $active = container.find('> .active')
+ var transition = callback
+ && $.support.transition
+ && $active.hasClass('fade')
+
+ function next() {
+ $active
+ .removeClass('active')
+ .find('> .dropdown-menu > .active')
+ .removeClass('active')
+
+ element.addClass('active')
+
+ if (transition) {
+ element[0].offsetWidth // reflow for transition
+ element.addClass('in')
+ } else {
+ element.removeClass('fade')
+ }
+
+ if (element.parent('.dropdown-menu')) {
+ element.closest('li.dropdown').addClass('active')
+ }
+
+ callback && callback()
+ }
+
+ transition ?
+ $active
+ .one($.support.transition.end, next)
+ .emulateTransitionEnd(150) :
+ next()
+
+ $active.removeClass('in')
+ }
+
+
+ // TAB PLUGIN DEFINITION
+ // =====================
+
+ var old = $.fn.tab
+
+ $.fn.tab = function ( option ) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.tab')
+
+ if (!data) $this.data('bs.tab', (data = new Tab(this)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ $.fn.tab.Constructor = Tab
+
+
+ // TAB NO CONFLICT
+ // ===============
+
+ $.fn.tab.noConflict = function () {
+ $.fn.tab = old
+ return this
+ }
+
+
+ // TAB DATA-API
+ // ============
+
+ $(document).on('click.bs.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) {
+ e.preventDefault()
+ $(this).tab('show')
+ })
+
+}(window.jQuery);
+
+/* ========================================================================
+ * Bootstrap: affix.js v3.0.0
+ * http://twbs.github.com/bootstrap/javascript.html#affix
+ * ========================================================================
+ * Copyright 2012 Twitter, Inc.
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ * http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ * ======================================================================== */
+
+
++function ($) { "use strict";
+
+ // AFFIX CLASS DEFINITION
+ // ======================
+
+ var Affix = function (element, options) {
+ this.options = $.extend({}, Affix.DEFAULTS, options)
+ this.$window = $(window)
+ .on('scroll.bs.affix.data-api', $.proxy(this.checkPosition, this))
+ .on('click.bs.affix.data-api', $.proxy(this.checkPositionWithEventLoop, this))
+
+ this.$element = $(element)
+ this.affixed =
+ this.unpin = null
+
+ this.checkPosition()
+ }
+
+ Affix.RESET = 'affix affix-top affix-bottom'
+
+ Affix.DEFAULTS = {
+ offset: 0
+ }
+
+ Affix.prototype.checkPositionWithEventLoop = function () {
+ setTimeout($.proxy(this.checkPosition, this), 1)
+ }
+
+ Affix.prototype.checkPosition = function () {
+ if (!this.$element.is(':visible')) return
+
+ var scrollHeight = $(document).height()
+ var scrollTop = this.$window.scrollTop()
+ var position = this.$element.offset()
+ var offset = this.options.offset
+ var offsetTop = offset.top
+ var offsetBottom = offset.bottom
+
+ if (typeof offset != 'object') offsetBottom = offsetTop = offset
+ if (typeof offsetTop == 'function') offsetTop = offset.top()
+ if (typeof offsetBottom == 'function') offsetBottom = offset.bottom()
+
+ var affix = this.unpin != null && (scrollTop + this.unpin <= position.top) ? false :
+ offsetBottom != null && (position.top + this.$element.height() >= scrollHeight - offsetBottom) ? 'bottom' :
+ offsetTop != null && (scrollTop <= offsetTop) ? 'top' : false
+
+ if (this.affixed === affix) return
+ if (this.unpin) this.$element.css('top', '')
+
+ this.affixed = affix
+ this.unpin = affix == 'bottom' ? position.top - scrollTop : null
+
+ this.$element.removeClass(Affix.RESET).addClass('affix' + (affix ? '-' + affix : ''))
+
+ if (affix == 'bottom') {
+ this.$element.offset({ top: document.body.offsetHeight - offsetBottom - this.$element.height() })
+ }
+ }
+
+
+ // AFFIX PLUGIN DEFINITION
+ // =======================
+
+ var old = $.fn.affix
+
+ $.fn.affix = function (option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.affix')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.affix', (data = new Affix(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ $.fn.affix.Constructor = Affix
+
+
+ // AFFIX NO CONFLICT
+ // =================
+
+ $.fn.affix.noConflict = function () {
+ $.fn.affix = old
+ return this
+ }
+
+
+ // AFFIX DATA-API
+ // ==============
+
+ $(window).on('load', function () {
+ $('[data-spy="affix"]').each(function () {
+ var $spy = $(this)
+ var data = $spy.data()
+
+ data.offset = data.offset || {}
+
+ if (data.offsetBottom) data.offset.bottom = data.offsetBottom
+ if (data.offsetTop) data.offset.top = data.offsetTop
+
+ $spy.affix(data)
+ })
+ })
+
+}(window.jQuery);
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.min.js
new file mode 100644
index 00000000000..1765631f41f
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/bootstrap3/js/bootstrap.min.js
@@ -0,0 +1,6 @@
+/**
+* bootstrap.js v3.0.0 by @fat and @mdo
+* Copyright 2013 Twitter Inc.
+* http://www.apache.org/licenses/LICENSE-2.0
+*/
+if(!jQuery)throw new Error("Bootstrap requires jQuery");+function(a){"use strict";function b(){var a=document.createElement("bootstrap"),b={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd otransitionend",transition:"transitionend"};for(var c in b)if(void 0!==a.style[c])return{end:b[c]}}a.fn.emulateTransitionEnd=function(b){var c=!1,d=this;a(this).one(a.support.transition.end,function(){c=!0});var e=function(){c||a(d).trigger(a.support.transition.end)};return setTimeout(e,b),this},a(function(){a.support.transition=b()})}(window.jQuery),+function(a){"use strict";var b='[data-dismiss="alert"]',c=function(c){a(c).on("click",b,this.close)};c.prototype.close=function(b){function c(){f.trigger("closed.bs.alert").remove()}var d=a(this),e=d.attr("data-target");e||(e=d.attr("href"),e=e&&e.replace(/.*(?=#[^\s]*$)/,""));var f=a(e);b&&b.preventDefault(),f.length||(f=d.hasClass("alert")?d:d.parent()),f.trigger(b=a.Event("close.bs.alert")),b.isDefaultPrevented()||(f.removeClass("in"),a.support.transition&&f.hasClass("fade")?f.one(a.support.transition.end,c).emulateTransitionEnd(150):c())};var d=a.fn.alert;a.fn.alert=function(b){return this.each(function(){var d=a(this),e=d.data("bs.alert");e||d.data("bs.alert",e=new c(this)),"string"==typeof b&&e[b].call(d)})},a.fn.alert.Constructor=c,a.fn.alert.noConflict=function(){return a.fn.alert=d,this},a(document).on("click.bs.alert.data-api",b,c.prototype.close)}(window.jQuery),+function(a){"use strict";var b=function(c,d){this.$element=a(c),this.options=a.extend({},b.DEFAULTS,d)};b.DEFAULTS={loadingText:"loading..."},b.prototype.setState=function(a){var b="disabled",c=this.$element,d=c.is("input")?"val":"html",e=c.data();a+="Text",e.resetText||c.data("resetText",c[d]()),c[d](e[a]||this.options[a]),setTimeout(function(){"loadingText"==a?c.addClass(b).attr(b,b):c.removeClass(b).removeAttr(b)},0)},b.prototype.toggle=function(){var a=this.$element.closest('[data-toggle="buttons"]');if(a.length){var b=this.$element.find("input").prop("checked",!this.$element.hasClass("active")).trigger("change");"radio"===b.prop("type")&&a.find(".active").removeClass("active")}this.$element.toggleClass("active")};var c=a.fn.button;a.fn.button=function(c){return this.each(function(){var d=a(this),e=d.data("bs.button"),f="object"==typeof c&&c;e||d.data("bs.button",e=new b(this,f)),"toggle"==c?e.toggle():c&&e.setState(c)})},a.fn.button.Constructor=b,a.fn.button.noConflict=function(){return a.fn.button=c,this},a(document).on("click.bs.button.data-api","[data-toggle^=button]",function(b){var c=a(b.target);c.hasClass("btn")||(c=c.closest(".btn")),c.button("toggle"),b.preventDefault()})}(window.jQuery),+function(a){"use strict";var b=function(b,c){this.$element=a(b),this.$indicators=this.$element.find(".carousel-indicators"),this.options=c,this.paused=this.sliding=this.interval=this.$active=this.$items=null,"hover"==this.options.pause&&this.$element.on("mouseenter",a.proxy(this.pause,this)).on("mouseleave",a.proxy(this.cycle,this))};b.DEFAULTS={interval:5e3,pause:"hover",wrap:!0},b.prototype.cycle=function(b){return b||(this.paused=!1),this.interval&&clearInterval(this.interval),this.options.interval&&!this.paused&&(this.interval=setInterval(a.proxy(this.next,this),this.options.interval)),this},b.prototype.getActiveIndex=function(){return this.$active=this.$element.find(".item.active"),this.$items=this.$active.parent().children(),this.$items.index(this.$active)},b.prototype.to=function(b){var c=this,d=this.getActiveIndex();return b>this.$items.length-1||0>b?void 0:this.sliding?this.$element.one("slid",function(){c.to(b)}):d==b?this.pause().cycle():this.slide(b>d?"next":"prev",a(this.$items[b]))},b.prototype.pause=function(b){return b||(this.paused=!0),this.$element.find(".next, .prev").length&&a.support.transition.end&&(this.$element.trigger(a.support.transition.end),this.cycle(!0)),this.interval=clearInterval(this.interval),this},b.prototype.next=function(){return this.sliding?void 0:this.slide("next")},b.prototype.prev=function(){return this.sliding?void 0:this.slide("prev")},b.prototype.slide=function(b,c){var d=this.$element.find(".item.active"),e=c||d[b](),f=this.interval,g="next"==b?"left":"right",h="next"==b?"first":"last",i=this;if(!e.length){if(!this.options.wrap)return;e=this.$element.find(".item")[h]()}this.sliding=!0,f&&this.pause();var j=a.Event("slide.bs.carousel",{relatedTarget:e[0],direction:g});if(!e.hasClass("active")){if(this.$indicators.length&&(this.$indicators.find(".active").removeClass("active"),this.$element.one("slid",function(){var b=a(i.$indicators.children()[i.getActiveIndex()]);b&&b.addClass("active")})),a.support.transition&&this.$element.hasClass("slide")){if(this.$element.trigger(j),j.isDefaultPrevented())return;e.addClass(b),e[0].offsetWidth,d.addClass(g),e.addClass(g),d.one(a.support.transition.end,function(){e.removeClass([b,g].join(" ")).addClass("active"),d.removeClass(["active",g].join(" ")),i.sliding=!1,setTimeout(function(){i.$element.trigger("slid")},0)}).emulateTransitionEnd(600)}else{if(this.$element.trigger(j),j.isDefaultPrevented())return;d.removeClass("active"),e.addClass("active"),this.sliding=!1,this.$element.trigger("slid")}return f&&this.cycle(),this}};var c=a.fn.carousel;a.fn.carousel=function(c){return this.each(function(){var d=a(this),e=d.data("bs.carousel"),f=a.extend({},b.DEFAULTS,d.data(),"object"==typeof c&&c),g="string"==typeof c?c:f.slide;e||d.data("bs.carousel",e=new b(this,f)),"number"==typeof c?e.to(c):g?e[g]():f.interval&&e.pause().cycle()})},a.fn.carousel.Constructor=b,a.fn.carousel.noConflict=function(){return a.fn.carousel=c,this},a(document).on("click.bs.carousel.data-api","[data-slide], [data-slide-to]",function(b){var c,d=a(this),e=a(d.attr("data-target")||(c=d.attr("href"))&&c.replace(/.*(?=#[^\s]+$)/,"")),f=a.extend({},e.data(),d.data()),g=d.attr("data-slide-to");g&&(f.interval=!1),e.carousel(f),(g=d.attr("data-slide-to"))&&e.data("bs.carousel").to(g),b.preventDefault()}),a(window).on("load",function(){a('[data-ride="carousel"]').each(function(){var b=a(this);b.carousel(b.data())})})}(window.jQuery),+function(a){"use strict";var b=function(c,d){this.$element=a(c),this.options=a.extend({},b.DEFAULTS,d),this.transitioning=null,this.options.parent&&(this.$parent=a(this.options.parent)),this.options.toggle&&this.toggle()};b.DEFAULTS={toggle:!0},b.prototype.dimension=function(){var a=this.$element.hasClass("width");return a?"width":"height"},b.prototype.show=function(){if(!this.transitioning&&!this.$element.hasClass("in")){var b=a.Event("show.bs.collapse");if(this.$element.trigger(b),!b.isDefaultPrevented()){var c=this.$parent&&this.$parent.find("> .panel > .in");if(c&&c.length){var d=c.data("bs.collapse");if(d&&d.transitioning)return;c.collapse("hide"),d||c.data("bs.collapse",null)}var e=this.dimension();this.$element.removeClass("collapse").addClass("collapsing")[e](0),this.transitioning=1;var f=function(){this.$element.removeClass("collapsing").addClass("in")[e]("auto"),this.transitioning=0,this.$element.trigger("shown.bs.collapse")};if(!a.support.transition)return f.call(this);var g=a.camelCase(["scroll",e].join("-"));this.$element.one(a.support.transition.end,a.proxy(f,this)).emulateTransitionEnd(350)[e](this.$element[0][g])}}},b.prototype.hide=function(){if(!this.transitioning&&this.$element.hasClass("in")){var b=a.Event("hide.bs.collapse");if(this.$element.trigger(b),!b.isDefaultPrevented()){var c=this.dimension();this.$element[c](this.$element[c]())[0].offsetHeight,this.$element.addClass("collapsing").removeClass("collapse").removeClass("in"),this.transitioning=1;var d=function(){this.transitioning=0,this.$element.trigger("hidden.bs.collapse").removeClass("collapsing").addClass("collapse")};return a.support.transition?(this.$element[c](0).one(a.support.transition.end,a.proxy(d,this)).emulateTransitionEnd(350),void 0):d.call(this)}}},b.prototype.toggle=function(){this[this.$element.hasClass("in")?"hide":"show"]()};var c=a.fn.collapse;a.fn.collapse=function(c){return this.each(function(){var 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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/button.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/button.css
new file mode 100644
index 00000000000..520064cfe9e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/button.css
@@ -0,0 +1,54 @@
+button {
+ font: 14px "Trebuchet MS";
+ background-color: #222;
+ background-image: -moz-linear-gradient(top, rgba(255,255,255,.25), rgba(255,255,255,.11));
+ background-image: -webkit-gradient(linear,left top,left bottom,color-stop(0, rgba(255,255,255,.25)),color-stop(1, rgba(255,255,255,.11)));
+ background-image: -webkit-linear-gradient(rgba(255,255,255,.25), rgba(255,255,255,.11));
+ color: #fff;
+ text-rendering: optimizeLegibility;
+ text-shadow: 0 -1px 1px #222;
+ padding: 3px 5px 3px 5px;
+ border: 0;
+ border-radius: 0;
+ border-bottom: 1px solid #222;
+ margin.left: 5;
+ -moz-box-shadow: 0 1px 3px #999;
+ -webkit-box-shadow: 0 1px 3px #999;
+ box-shadow: 0 1px 3px #999;
+}
+
+button.first {
+ border-top-left-radius: 5px;
+ border-bottom-left-radius: 5px;
+}
+
+button.last {
+ border-top-right-radius: 5px;
+ border-bottom-right-radius: 5px;
+}
+
+button.active {
+ background-color: rgb(65,102,133);
+}
+
+button:hover {
+ background-color: grey;
+ cursor: pointer;
+}
+
+input {
+ font: 14px "Trebuchet MS";
+ background-image: -moz-linear-gradient(top, rgba(255,255,255,.25), rgba(255,255,255,.11));
+ background-image: -webkit-gradient(linear,left top,left bottom,color-stop(0, rgba(255,255,255,.25)),color-stop(1, rgba(255,255,255,.11)));
+ background-image: -webkit-linear-gradient(rgba(255,255,255,.5), rgba(255,255,255,.1));
+ color: #000;
+ text-rendering: optimizeLegibility;
+ padding: 3px 5px 3px 5px;
+ border: 0;
+ border-radius: 0;
+ margin: 0;
+ -moz-box-shadow: 0 1px 3px #999;
+ -webkit-box-shadow: 0 1px 3px #999;
+ box-shadow: 0 1px 3px #999;
+}
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/d3.v2.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/d3.v2.min.js
new file mode 100644
index 00000000000..0b4ea58fdb3
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/d3.v2.min.js
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html
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+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html
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+ <script type="text/javascript" src="jquery-1.8.2.min.js"></script>
+ <script type="text/javascript" src="bootstrap3/js/bootstrap.min.js"></script>
+ <script type="text/javascript" src="spin.min.js"></script>
+ <script type="text/javascript" src="openbis.js"></script>
+ <script type="text/javascript" src="openbis-dsu.js"></script>
+ <!-- To speed development, cache the requests -->
+ <!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
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+ .attr("id", function (row) {
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+ .attr("class", function (row) {
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+ lines: 13, // The number of lines to draw
+ length: 7, // The length of each line
+ width: 4, // The line thickness
+ radius: 10, // The radius of the inner circle
+ corners: 1, // Corner roundness (0..1)
+ rotate: 0, // The rotation offset
+ color: '#000', // #rgb or #rrggbb
+ speed: 1, // Rounds per second
+ trail: 60, // Afterglow percentage
+ shadow: false, // Whether to render a shadow
+ hwaccel: false, // Whether to use hardware acceleration
+ className: 'spinner', // The CSS class to assign to the spinner
+ zIndex: 2e9, // The z-index (defaults to 2000000000)
+ top: 250, // Top position relative to parent in px
+ left: 'auto' // Left position relative to parent in px
+ };
+ var spinner = new Spinner(opts).spin(target);
+ }
+
+
+ function callIngestionSetInvoice(piSampleString) {
+ var sampleIdentifier = context.getEntityIdentifier()
+
+ var piSampleStringList = piSampleString.split("#")
+ var principalInvestigator = piSampleStringList[0]
+ var listOfSamples = piSampleStringList.slice(1, piSampleStringList.length)
+
+ dsu.server.useSession(context.getSessionId());
+ var parameters =
+ {
+ sampleId: sampleIdentifier,
+ pI: principalInvestigator,
+ listOfSamples: listOfSamples
+ };
+
+ d3.select("#main").append("div").attr("id", "setInvoice").append("p").text("Setting 'INVOICE SENT' property of " + listOfSamples + "to TRUE");
+ var target = document.getElementById('setInvoice');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "setInvoiceSent", parameters, hideButtons);
+ }
+
+
+ function callIngestionService(method) {
+ var permIdentifier = context.getEntityIdentifier()
+ //var mySendEmail = $("#sendEmail").is(':checked')
+ var clusteroptions = "brutus"
+ var bowtieParameters = $("#Bowtie2Paramter").val()
+
+ if ($('#brutus').is(':active')) {
+ clusteroptions = 'brutus';
+ }
+ if ($('#bsseGrid').is(':active')) {
+ clusteroptions = 'bsseGrid';
+ }
+
+
+ d3.select("#main").select("#progress").remove()
+ d3.select("#main").select("#vis").remove()
+ didCreateVis = false;
+ dsu.server.useSession(context.getSessionId());
+ createVis()
+
+ myUserId = context.getSessionId().split("-")[0];
+
+ var parameters =
+ {
+ permId: permIdentifier,
+ //sendEmail: mySendEmail,
+ bowtieParam: bowtieParameters,
+ clusteroptionsParam : clusteroptions,
+ userId : myUserId,
+ method: method
+ };
+ console.log(parameters)
+
+ //d3.select("#main").append("div").attr("id", "progress").append("p").text("Starting Job...");
+ var target = document.getElementById('progress');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "triggergc3pie", parameters, displayReturnedTable);
+ }
+
+ function refresh() {
+ callIngestionService("pollJob")
+
+ }
+
+
+ </script>
+</head>
+<body>
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+
+ <h2>Bowtie 2
+ <small>Read Alignment</small>
+ </h2>
+ </div>
+ </div>
+</div>
+
+<br>
+
+<p>
+
+
+
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div class="btn-group">
+ <button type="button" class="btn btn-default" id="brutus"> ETHZ Brutus Cluster </button>
+ <button type="button" class="btn btn-default" id="bsseGrid"> BSSE Grid </button>
+
+ </div>
+ </div>
+ </div>
+</div>
+</p>
+
+<p>
+
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <form role="form">
+ <div class="form-group">
+ <label>Parameters</label>
+ <input type="text" class="form-control" id="Bowtie2Paramter"
+ placeholder="e.g. --very-sensitive --phred33 -q">
+ </div>
+ </form>
+ </div>
+ </div>
+</div>
+</p>
+
+<p>
+<!--
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div class="checkbox">
+ <label>
+ <input type="checkbox" id="sendEmail"> Send Email when job finished
+ </label>
+ </div>
+ </div>
+ </div>
+</div>
+-->
+</p>
+
+<p>
+
+<div class="container">
+ <div class="row">
+ <div class="col-md-3">
+ <button class="btn btn-default" type="submit"
+ "createInvoice-button" id="submitBtn" onclick="callIngestionService('startJob');">Start Bowtie2</button>
+ </div>
+ <div class="col-md-3">
+ <button type="button" class="btn btn-default" onclick="refresh();">
+ <span class="glyphicon glyphicon-refresh"></span> Refresh
+ </button>
+ </div>
+ </div>
+</div>
+</p>
+
+<br>
+
+<p>
+
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div class="panel-group" id="accordion">
+ <div class="panel panel-default">
+ <div class="panel-heading">
+ <h6 div class="panel-title">
+ <a class="accordion-toggle" data-toggle="collapse" data-parent="#accordion"
+ href="#collapseOne">
+ Available Bowtie 2 Parameters
+ </a>
+ </div>
+ </h6>
+ </div>
+ <div id="collapseOne" class="panel-collapse collapse">
+ <div class="panel-body">
+ <pre>
+Usage:
+ bowtie2 [options]* -x <bt2-idx> {-1 <m1> -2 <m2> | -U <r>} [-S <sam>]
+
+ <bt2-idx> Index filename prefix (minus trailing .X.bt2).
+ NOTE: Bowtie 1 and Bowtie 2 indexes are not compatible.
+ <m1> Files with #1 mates, paired with files in <m2>.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <m2> Files with #2 mates, paired with files in <m1>.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <r> Files with unpaired reads.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <sam> File for SAM output (default: stdout)
+
+ <m1>, <m2>, <r> can be comma-separated lists (no whitespace) and can be
+ specified many times. E.g. '-U file1.fq,file2.fq -U file3.fq'.
+
+Options (defaults in parentheses):
+
+ Input:
+ -q query input files are FASTQ .fq/.fastq (default)
+ --qseq query input files are in Illumina's qseq format
+ -f query input files are (multi-)FASTA .fa/.mfa
+ -r query input files are raw one-sequence-per-line
+ -c <m1>, <m2>, <r> are sequences themselves, not files
+ -s/--skip <int> skip the first <int> reads/pairs in the input (none)
+ -u/--upto <int> stop after first <int> reads/pairs (no limit)
+ -5/--trim5 <int> trim <int> bases from 5'/left end of reads (0)
+ -3/--trim3 <int> trim <int> bases from 3'/right end of reads (0)
+ --phred33 qualities are Phred+33 (default)
+ --phred64 qualities are Phred+64
+ --int-quals qualities encoded as space-delimited integers
+
+ Presets: Same as:
+ For --end-to-end:
+ --very-fast -D 5 -R 1 -N 0 -L 22 -i S,0,2.50
+ --fast -D 10 -R 2 -N 0 -L 22 -i S,0,2.50
+ --sensitive -D 15 -R 2 -N 0 -L 22 -i S,1,1.15 (default)
+ --very-sensitive -D 20 -R 3 -N 0 -L 20 -i S,1,0.50
+
+ For --local:
+ --very-fast-local -D 5 -R 1 -N 0 -L 25 -i S,1,2.00
+ --fast-local -D 10 -R 2 -N 0 -L 22 -i S,1,1.75
+ --sensitive-local -D 15 -R 2 -N 0 -L 20 -i S,1,0.75 (default)
+ --very-sensitive-local -D 20 -R 3 -N 0 -L 20 -i S,1,0.50
+
+ Alignment:
+ -N <int> max # mismatches in seed alignment; can be 0 or 1 (0)
+ -L <int> length of seed substrings; must be >3, <32 (22)
+ -i <func> interval between seed substrings w/r/t read len (S,1,1.15)
+ --n-ceil <func> func for max # non-A/C/G/Ts permitted in aln (L,0,0.15)
+ --dpad <int> include <int> extra ref chars on sides of DP table (15)
+ --gbar <int> disallow gaps within <int> nucs of read extremes (4)
+ --ignore-quals treat all quality values as 30 on Phred scale (off)
+ --nofw do not align forward (original) version of read (off)
+ --norc do not align reverse-complement version of read (off)
+
+ --end-to-end entire read must align; no clipping (on)
+ OR
+ --local local alignment; ends might be soft clipped (off)
+
+ Scoring:
+ --ma <int> match bonus (0 for --end-to-end, 2 for --local)
+ --mp <int> max penalty for mismatch; lower qual = lower penalty (6)
+ --np <int> penalty for non-A/C/G/Ts in read/ref (1)
+ --rdg <int>,<int> read gap open, extend penalties (5,3)
+ --rfg <int>,<int> reference gap open, extend penalties (5,3)
+ --score-min <func> min acceptable alignment score w/r/t read length
+ (G,20,8 for local, L,-0.6,-0.6 for end-to-end)
+
+ Reporting:
+ (default) look for multiple alignments, report best, with MAPQ
+ OR
+ -k <int> report up to <int> alns per read; MAPQ not meaningful
+ OR
+ -a/--all report all alignments; very slow, MAPQ not meaningful
+
+ Effort:
+ -D <int> give up extending after <int> failed extends in a row (15)
+ -R <int> for reads w/ repetitive seeds, try <int> sets of seeds (2)
+
+ Paired-end:
+ -I/--minins <int> minimum fragment length (0)
+ -X/--maxins <int> maximum fragment length (500)
+ --fr/--rf/--ff -1, -2 mates align fw/rev, rev/fw, fw/fw (--fr)
+ --no-mixed suppress unpaired alignments for paired reads
+ --no-discordant suppress discordant alignments for paired reads
+ --no-dovetail not concordant when mates extend past each other
+ --no-contain not concordant when one mate alignment contains other
+ --no-overlap not concordant when mates overlap at all
+
+ Output:
+ -t/--time print wall-clock time taken by search phases
+ --un <path> write unpaired reads that didn't align to <path>
+ --al <path> write unpaired reads that aligned at least once to <path>
+ --un-conc <path> write pairs that didn't align concordantly to <path>
+ --al-conc <path> write pairs that aligned concordantly at least once to <path>
+ (Note: for --un, --al, --un-conc, or --al-conc, add '-gz' to the option name, e.g.
+ --un-gz <path>, to gzip compress output, or add '-bz2' to bzip2 compress output.)
+ --quiet print nothing to stderr except serious errors
+ --met-file <path> send metrics to file at <path> (off)
+ --met-stderr send metrics to stderr (off)
+ --met <int> report internal counters & metrics every <int> secs (1)
+ --no-head supppress header lines, i.e. lines starting with @
+ --no-sq supppress @SQ header lines
+ --rg-id <text> set read group id, reflected in @RG line and RG:Z: opt field
+ --rg <text> add <text> ("lab:value") to @RG line of SAM header.
+ Note: @RG line only printed when --rg-id is set.
+ --omit-sec-seq put '*' in SEQ and QUAL fields for secondary alignments.
+
+ Performance:
+ -o/--offrate <int> override offrate of index; must be >= index's offrate
+ -p/--threads <int> number of alignment threads to launch (1)
+ --reorder force SAM output order to match order of input reads
+ --mm use memory-mapped I/O for index; many 'bowtie's can share
+
+ Other:
+ --qc-filter filter out reads that are bad according to QSEQ filter
+ --seed <int> seed for random number generator (0)
+ --non-deterministic seed rand. gen. arbitrarily instead of using read attributes
+ --version print version information and quit
+ -h/--help print this usage message
+</pre>
+ </div>
+ </div>
+ </div>
+ </div>
+ </div>
+</div>
+</div>
+</div>
+</p>
+</div>
+
+<!-- Placeholder for the output coming back from the server -->
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div id="main">
+ </div>
+ </div>
+ </div>
+</div>
+
+<!-- Footer ================================================== -->
+
+<footer class="bs-footer" role="contentinfo">
+ <h6 div class="container">
+ <a href="http://bowtie-bio.sourceforge.net/bowtie2/index.shtml" target="_blank">Bowtie 2 Homepage</a>
+ </div>
+ </h6>
+</footer>
+
+
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html.sv b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html.sv
new file mode 100644
index 00000000000..b777734dc4d
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index.html.sv
@@ -0,0 +1,314 @@
+<head>
+ <title>Quantitative Genomics Facility</title>
+ <link rel="stylesheet" href="bootstrap3/css/bootstrap.min.css">
+ <script type="text/javascript" src="d3.v2.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="bootstrap3/js/bootstrap.min.js"></script>
+ <script type="text/javascript" src="spin.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="openbis-dsu.js"></script>
+ <!-- To speed development, cache the requests -->
+ <!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
+ <script>
+
+dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+var vis;
+var didCreateVis = false;
+var context = new openbisWebAppContext();
+
+$(document).ready(function() {
+});
+
+function createVis()
+{
+ if (didCreateVis) return;
+ vis = d3.select("#main").append("div").attr("id", "vis");
+ didCreateVis = true;
+}
+
+function displayReturnedTable(data)
+{
+ if (data.error) {
+ console.log(data.error);
+ vis.append("p").text("Could not retrieve data.");
+ return;
+ }
+
+ var dataToShow = data.result;
+
+ d3.select("#progress").remove()
+ d3.select("#button-group").remove()
+
+ vis.append("p").text("");
+ // Pick all div elements of the visualization
+ vis.selectAll("div")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .html(function(row) { return row[1].value;})
+
+ var button = d3.select("#container")
+ .append("div")
+
+ button.selectAll("button")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .append("button")
+ .attr("id", function(row) { return row[0].value; })
+ .attr("class", function(row) { if (row[0].value == 0) {return "btn btn-success";} return "btn btn-danger";})
+ //.attr("onclick", function(row) { return "callIngestionSetInvoice('" + row + "');" })
+ .text(function(row) { if (row[0].value == 0) { return "OK"; } return "Fail";});
+
+// var invoices = [];
+// for (var i=0;i<data.result.rows.length;i++) {
+// //var val = data.result.rows[i][1].value.split('#')[0];
+// var val = data.result.rows[i][1].value;
+// if (val) {
+// invoices.push(val)
+// }
+// }
+}
+
+function hideButtons(data)
+{
+ var buttonId = data.result.rows[0][0].value;
+ d3.select("#setInvoice").remove()
+ d3.select("#main").append("div").attr("id", "Done").append("p").text("Done " + buttonId);
+ d3.select("button#" + String(buttonId)).remove();
+}
+
+function spinner (target) {
+ var opts = {
+ lines: 13, // The number of lines to draw
+ length: 7, // The length of each line
+ width: 4, // The line thickness
+ radius: 10, // The radius of the inner circle
+ corners: 1, // Corner roundness (0..1)
+ rotate: 0, // The rotation offset
+ color: '#000', // #rgb or #rrggbb
+ speed: 1, // Rounds per second
+ trail: 60, // Afterglow percentage
+ shadow: false, // Whether to render a shadow
+ hwaccel: false, // Whether to use hardware acceleration
+ className: 'spinner', // The CSS class to assign to the spinner
+ zIndex: 2e9, // The z-index (defaults to 2000000000)
+ top: 250, // Top position relative to parent in px
+ left: 'auto' // Left position relative to parent in px
+ };
+ var spinner = new Spinner(opts).spin(target);
+}
+
+
+function callIngestionSetInvoice(piSampleString)
+{
+ var sampleIdentifier = context.getEntityIdentifier()
+
+ var piSampleStringList = piSampleString.split("#")
+ var principalInvestigator = piSampleStringList[0]
+ var listOfSamples = piSampleStringList.slice(1,piSampleStringList.length)
+
+ dsu.server.useSession(context.getSessionId());
+ var parameters =
+ {
+ sampleId : sampleIdentifier,
+ pI : principalInvestigator,
+ listOfSamples : listOfSamples
+ };
+
+ d3.select("#main").append("div").attr("id", "setInvoice").append("p").text("Setting 'INVOICE SENT' property of " + listOfSamples + "to TRUE");
+ var target = document.getElementById('setInvoice');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "setInvoiceSent", parameters, hideButtons);
+}
+
+
+function callIngestionService()
+{
+ var permIdentifier = context.getEntityIdentifier()
+ var mySendEmail = $("#sendEmail").is(':checked')
+ var bowtieParameters = $("#Bowtie2Paramter").val()
+
+ d3.select("#main").select("#progress").remove()
+ d3.select("#main").select("#vis").remove()
+ didCreateVis = false;
+ dsu.server.useSession(context.getSessionId());
+ createVis()
+ var parameters =
+ {
+ permId : permIdentifier,
+ sendEmail : mySendEmail,
+ bowtieParam : bowtieParameters
+ };
+
+ d3.select("#main").append("div").attr("id", "progress").append("p").text("Starting gc3pie Job...");
+ var target = document.getElementById('progress');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "triggergc3pie", parameters, displayReturnedTable);
+}
+
+ </script>
+</head>
+<body>
+<div id="container" class="container">
+<h2>Bowtie 2 Alignment</h2>
+<div id="main">
+
+
+
+<form role="form">
+ <div class="form-group">
+ <label for="Bowtie2ParamterLabel">Parameters</label>
+ <input type="text" class="form-control" id="Bowtie2Paramter" placeholder="e.g. --very-sensitive --phred33 -q">
+ </div>
+ <div class="checkbox">
+ <label>
+ <input type="checkbox" id="sendEmail"> Send Email when job finished
+ </label>
+ </div>
+</form>
+<button class="btn btn-default btn-default" type="submit" "createInvoice-button" onclick="callIngestionService();">Start Bowtie2 Alignment</button>
+
+ <div class="panel-group" id="accordion">
+ <div class="panel panel-default">
+ <div class="panel-heading">
+ <h4 class="panel-title">
+ <a class="accordion-toggle" data-toggle="collapse" data-parent="#accordion" href="#collapseOne">
+ Available Bowtie 2 Options
+ </a>
+ </h4>
+ </div>
+ <div id="collapseOne" class="panel-collapse collapse">
+ <div class="panel-body">
+ <pre>
+Usage:
+ bowtie2 [options]* -x <bt2-idx> {-1 <m1> -2 <m2> | -U <r>} [-S <sam>]
+
+ <bt2-idx> Index filename prefix (minus trailing .X.bt2).
+ NOTE: Bowtie 1 and Bowtie 2 indexes are not compatible.
+ <m1> Files with #1 mates, paired with files in <m2>.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <m2> Files with #2 mates, paired with files in <m1>.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <r> Files with unpaired reads.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <sam> File for SAM output (default: stdout)
+
+ <m1>, <m2>, <r> can be comma-separated lists (no whitespace) and can be
+ specified many times. E.g. '-U file1.fq,file2.fq -U file3.fq'.
+
+Options (defaults in parentheses):
+
+ Input:
+ -q query input files are FASTQ .fq/.fastq (default)
+ --qseq query input files are in Illumina's qseq format
+ -f query input files are (multi-)FASTA .fa/.mfa
+ -r query input files are raw one-sequence-per-line
+ -c <m1>, <m2>, <r> are sequences themselves, not files
+ -s/--skip <int> skip the first <int> reads/pairs in the input (none)
+ -u/--upto <int> stop after first <int> reads/pairs (no limit)
+ -5/--trim5 <int> trim <int> bases from 5'/left end of reads (0)
+ -3/--trim3 <int> trim <int> bases from 3'/right end of reads (0)
+ --phred33 qualities are Phred+33 (default)
+ --phred64 qualities are Phred+64
+ --int-quals qualities encoded as space-delimited integers
+
+ Presets: Same as:
+ For --end-to-end:
+ --very-fast -D 5 -R 1 -N 0 -L 22 -i S,0,2.50
+ --fast -D 10 -R 2 -N 0 -L 22 -i S,0,2.50
+ --sensitive -D 15 -R 2 -N 0 -L 22 -i S,1,1.15 (default)
+ --very-sensitive -D 20 -R 3 -N 0 -L 20 -i S,1,0.50
+
+ For --local:
+ --very-fast-local -D 5 -R 1 -N 0 -L 25 -i S,1,2.00
+ --fast-local -D 10 -R 2 -N 0 -L 22 -i S,1,1.75
+ --sensitive-local -D 15 -R 2 -N 0 -L 20 -i S,1,0.75 (default)
+ --very-sensitive-local -D 20 -R 3 -N 0 -L 20 -i S,1,0.50
+
+ Alignment:
+ -N <int> max # mismatches in seed alignment; can be 0 or 1 (0)
+ -L <int> length of seed substrings; must be >3, <32 (22)
+ -i <func> interval between seed substrings w/r/t read len (S,1,1.15)
+ --n-ceil <func> func for max # non-A/C/G/Ts permitted in aln (L,0,0.15)
+ --dpad <int> include <int> extra ref chars on sides of DP table (15)
+ --gbar <int> disallow gaps within <int> nucs of read extremes (4)
+ --ignore-quals treat all quality values as 30 on Phred scale (off)
+ --nofw do not align forward (original) version of read (off)
+ --norc do not align reverse-complement version of read (off)
+
+ --end-to-end entire read must align; no clipping (on)
+ OR
+ --local local alignment; ends might be soft clipped (off)
+
+ Scoring:
+ --ma <int> match bonus (0 for --end-to-end, 2 for --local)
+ --mp <int> max penalty for mismatch; lower qual = lower penalty (6)
+ --np <int> penalty for non-A/C/G/Ts in read/ref (1)
+ --rdg <int>,<int> read gap open, extend penalties (5,3)
+ --rfg <int>,<int> reference gap open, extend penalties (5,3)
+ --score-min <func> min acceptable alignment score w/r/t read length
+ (G,20,8 for local, L,-0.6,-0.6 for end-to-end)
+
+ Reporting:
+ (default) look for multiple alignments, report best, with MAPQ
+ OR
+ -k <int> report up to <int> alns per read; MAPQ not meaningful
+ OR
+ -a/--all report all alignments; very slow, MAPQ not meaningful
+
+ Effort:
+ -D <int> give up extending after <int> failed extends in a row (15)
+ -R <int> for reads w/ repetitive seeds, try <int> sets of seeds (2)
+
+ Paired-end:
+ -I/--minins <int> minimum fragment length (0)
+ -X/--maxins <int> maximum fragment length (500)
+ --fr/--rf/--ff -1, -2 mates align fw/rev, rev/fw, fw/fw (--fr)
+ --no-mixed suppress unpaired alignments for paired reads
+ --no-discordant suppress discordant alignments for paired reads
+ --no-dovetail not concordant when mates extend past each other
+ --no-contain not concordant when one mate alignment contains other
+ --no-overlap not concordant when mates overlap at all
+
+ Output:
+ -t/--time print wall-clock time taken by search phases
+ --un <path> write unpaired reads that didn't align to <path>
+ --al <path> write unpaired reads that aligned at least once to <path>
+ --un-conc <path> write pairs that didn't align concordantly to <path>
+ --al-conc <path> write pairs that aligned concordantly at least once to <path>
+ (Note: for --un, --al, --un-conc, or --al-conc, add '-gz' to the option name, e.g.
+ --un-gz <path>, to gzip compress output, or add '-bz2' to bzip2 compress output.)
+ --quiet print nothing to stderr except serious errors
+ --met-file <path> send metrics to file at <path> (off)
+ --met-stderr send metrics to stderr (off)
+ --met <int> report internal counters & metrics every <int> secs (1)
+ --no-head supppress header lines, i.e. lines starting with @
+ --no-sq supppress @SQ header lines
+ --rg-id <text> set read group id, reflected in @RG line and RG:Z: opt field
+ --rg <text> add <text> ("lab:value") to @RG line of SAM header.
+ Note: @RG line only printed when --rg-id is set.
+ --omit-sec-seq put '*' in SEQ and QUAL fields for secondary alignments.
+
+ Performance:
+ -o/--offrate <int> override offrate of index; must be >= index's offrate
+ -p/--threads <int> number of alignment threads to launch (1)
+ --reorder force SAM output order to match order of input reads
+ --mm use memory-mapped I/O for index; many 'bowtie's can share
+
+ Other:
+ --qc-filter filter out reads that are bad according to QSEQ filter
+ --seed <int> seed for random number generator (0)
+ --non-deterministic seed rand. gen. arbitrarily instead of using read attributes
+ --version print version information and quit
+ -h/--help print this usage message
+</pre>
+</div>
+</div>
+</div>
+</div>
+
+</div>
+</div>
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index2.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index2.html
new file mode 100644
index 00000000000..1ae95d1251d
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/index2.html
@@ -0,0 +1,14 @@
+<head>
+ <title>Quantitative Genomics Facility</title>
+ <script type="text/css" src="bootstrap3/css/bootstrap.min.css"></script>
+</head>
+<body>
+<div id="main">
+ <button class="btn btn-default btn-lg" type="button" "createInvoice-button" onclick="callIngestionService();">Start gc3pie Job</button>
+</div>
+<p>
+ <button type="button" class="btn btn-primary btn-sm">Small button</button>
+ <button type="button" class="btn btn-default btn-sm">Small button</button>
+</p>
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/jquery-1.8.2.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/jquery-1.8.2.min.js
new file mode 100644
index 00000000000..bc3fbc81b26
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/jquery-1.8.2.min.js
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a||e.body})}}),p.each({scrollLeft:"pageXOffset",scrollTop:"pageYOffset"},function(a,c){var d=/Y/.test(c);p.fn[a]=function(e){return p.access(this,function(a,e,f){var g=da(a);if(f===b)return g?c in g?g[c]:g.document.documentElement[e]:a[e];g?g.scrollTo(d?p(g).scrollLeft():f,d?f:p(g).scrollTop()):a[e]=f},a,e,arguments.length,null)}}),p.each({Height:"height",Width:"width"},function(a,c){p.each({padding:"inner"+a,content:c,"":"outer"+a},function(d,e){p.fn[e]=function(e,f){var g=arguments.length&&(d||typeof e!="boolean"),h=d||(e===!0||f===!0?"margin":"border");return p.access(this,function(c,d,e){var f;return p.isWindow(c)?c.document.documentElement["client"+a]:c.nodeType===9?(f=c.documentElement,Math.max(c.body["scroll"+a],f["scroll"+a],c.body["offset"+a],f["offset"+a],f["client"+a])):e===b?p.css(c,d,e,h):p.style(c,d,e,h)},c,g?e:b,g,null)}})}),a.jQuery=a.$=p,typeof define=="function"&&define.amd&&define.amd.jQuery&&define("jquery",[],function(){return p})})(window);
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-action-deferrer.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-action-deferrer.js
new file mode 100644
index 00000000000..ee2e8171738
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-action-deferrer.js
@@ -0,0 +1,31 @@
+/**
+ * A utility class for deferring an action until all of some kind of action has completed
+ *
+ * @argument dependencies An array of the keys for the dependencies.
+ */
+
+function openbisActionDeferrer(pendingAction, dependencies) {
+ this.pendingAction = pendingAction;
+ this.dependencies = {};
+ var newme = this;
+ dependencies.forEach(function(key) {
+ newme.dependencies[key] = false;
+ });
+}
+
+/**
+ * Note that a dependency completed. Execute the pending action if appropriate.
+ */
+openbisActionDeferrer.prototype.dependencyCompleted = function(key) {
+ this.dependencies[key] = true;
+ var shouldExecute = true;
+ for (prop in this.dependencies) {
+ if (false == this.dependencies[prop]) {
+ shouldExecute = false;
+ break;
+ }
+ }
+ if (shouldExecute) {
+ this.pendingAction();
+ }
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-dsu.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-dsu.js
new file mode 100644
index 00000000000..52e7336254a
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-dsu.js
@@ -0,0 +1,103 @@
+/**
+ * openbis-dsu.js
+ * OpenBIS-DSU API
+ *
+ * A DSU-specific API for accessing openBIS. Depends on openbis.js.
+ * @author Chandrasekhar Ramakrishnan
+ */
+
+/**
+ * The openbis_dsu object provides a dsu-specific interface to openbis.
+ *
+ * It creates objects for projects, experiments, samples, and datasets. These objects
+ * are designed to be passed on to GUI libraries (like d3). The openbis version of each
+ * object is stored in the bis variable.
+ * @constructor
+ */
+function openbis_dsu(url, dssUrl) {
+ this.server = new openbis(url, dssUrl);
+}
+
+/**
+ * Request the sequencing samples for a project
+ */
+openbis_dsu.prototype.retrieveSequencingSamples = function(action)
+{
+ var sampleCriteria =
+ {
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ attribute : "TYPE",
+ fieldType : "ATTRIBUTE",
+ desiredValue : "ILLUMINA_SEQUENCING"
+ } ],
+ operator : "MATCH_ALL_CLAUSES"
+ };
+
+ this.server.searchForSamples(sampleCriteria, action);
+}
+
+/**
+ * Get the flow lanes for a sequencing sample.
+ */
+openbis_dsu.prototype.retrieveFlowLanesForSequencingSample = function(sample, action)
+{
+ var projectCode = null;
+
+ if(sample.bis.experimentIdentifierOrNull){
+ var experimentIdentifierRegexp = /\/(.*)\/(.*)\/(.*)/g;
+ var experimentIdentifierMatch = experimentIdentifierRegexp.exec(sample.bis.experimentIdentifierOrNull);
+ projectCode = experimentIdentifierMatch[2];
+ }else{
+ action(null);
+ return;
+ }
+
+ var experimentCriteria =
+ {
+ targetEntityKind : "EXPERIMENT",
+ criteria : {
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ "attribute":"PROJECT",
+ "fieldType":"ATTRIBUTE",
+ "desiredValue": projectCode
+ } ]
+ }
+ };
+
+ var parentCriteria =
+ {
+ targetEntityKind : "SAMPLE_PARENT",
+ criteria : {
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ "attribute":"CODE",
+ "fieldType":"ATTRIBUTE",
+ "desiredValue": sample.bis.code
+ } ]
+ }
+ };
+
+ var sampleCriteria =
+ {
+ subCriterias : [ experimentCriteria, parentCriteria ],
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ attribute : "TYPE",
+ fieldType : "ATTRIBUTE",
+ desiredValue : "ILLUMINA_FLOW_LANE"
+ } ],
+ operator : "MATCH_ALL_CLAUSES"
+ };
+
+ this.server.searchForSamples(sampleCriteria, action)
+}
+
+/**
+ * Get all data sets connected to a sequencing sample
+ */
+openbis_dsu.prototype.retrieveDataSetsForSequencingSample = function(sequencing, action)
+{
+ this.server.listDataSetsForSample(sequencing.bis, false, action);
+}
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-login.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-login.js
new file mode 100644
index 00000000000..7d1ece5965c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-login.js
@@ -0,0 +1,77 @@
+/**
+ * A module for configuring the login page to openBIS. It hides and shows
+ * the login form and main content as necessary. It invokes a specified
+ * function on successful login.
+ *
+ * This module assumes that the page follows the structure of our standard
+ * login page. This means that the Following elements are defined :
+ *
+ * div#login-form-div
+ * form#login-form
+ * input#username
+ * input#password
+ * button#login-button
+ * div#main
+ * button#logout-button
+ *
+ * Assuming these elements are defined, this module configures their appeareance
+ * and behavior.The div#main element is initially hidden until the user logs in.
+ * Once logged in, the div#login-form-div element is hidden and the div#main
+ * element is made visible.
+ *
+ * @module openbis-login
+ * @requires jquery
+ */
+
+
+/**
+ * Configure the login page to hide and show the login form and main content
+ * as appropriate
+ *
+ * @param openbis The openbis facade object
+ * @param onLogin The function to be called when login succeeds.
+ * @function
+ */
+
+function openbisLoginPage(openbis, onLogin)
+{
+ this.openbis = openbis;
+ this.onLogin = onLogin;
+}
+
+openbisLoginPage.prototype.configure = function(){
+ var loginPage = this;
+
+ $('#main').hide();
+
+ var username = $("#username").value;
+ if(username == null || username.length==0) {
+ $("#username").focus();
+ } else {
+ $("#login-button").focus();
+ }
+
+ $('#logout-button').click(function() {
+ loginPage.openbis.logout(function(data) {
+ $("#login-form-div").show();
+ $("#main").hide();
+ $("#username").focus();
+ });
+ });
+
+ $('#login-form').submit(function() {
+ loginPage.openbis.login( $.trim($('#username').val()), $.trim($('#password').val()), function(data) { loginPage.onLogin(data) })
+ });
+
+ loginPage.openbis.ifRestoredSessionActive(function(data) { loginPage.onLogin(data) });
+
+ // Make the ENTER key the default button
+ $("login-form input").keypress(function (e) {
+ if ((e.which && e.which == 13) || (e.keyCode && e.keyCode == 13)) {
+ $('button[type=submit].default').click();
+ return false;
+ } else {
+ return true;
+ }
+ });
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-request-cache.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-request-cache.js
new file mode 100644
index 00000000000..29c57a8145e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-request-cache.js
@@ -0,0 +1,51 @@
+/**
+ * Caches openBIS JSON responses into the local browser storage.
+ *
+ * Once the local storage is populated with data from real
+ * server interactions, the UI development can be done offline
+ * based on the cached server responses.
+ *
+ * USAGE : include this script in your app *after* the openbis facade.
+ * Be careful not to distribute it to your customers.
+ *
+ * <script type="text/javascript" src="openbis-request-cache.js"></script>
+ *
+ * To clear the cache, you can call "localStorage.clear()" in a browser console.
+ */
+
+var original_ajax_request_func = _openbisInternal.prototype.ajaxRequest;
+
+_openbisInternal.prototype.ajaxRequest = function(settings) {
+
+ function getCacheId(settings) {
+ var methodName = settings.data['method']
+ if (methodName.toLowerCase().indexOf('authenticate') != -1) {
+ // do not store sensitive parameters information
+ // for login methods (e.g. username/password)
+ return methodName
+ } else {
+ var params = settings.data['params']
+ return methodName + '-' + JSON.stringify(params)
+ }
+ }
+
+ var cacheId = getCacheId(settings)
+ var cachedResponse = localStorage.getItem(cacheId)
+
+ if (cachedResponse == null) {
+ var originalCallback = settings.success
+ settings.success = function(response) {
+ localStorage.setItem(cacheId, JSON.stringify(response))
+ originalCallback(response)
+ }
+ original_ajax_request_func(settings);
+ } else {
+ // async execution after a delay of 100ms
+ setTimeout(function() {
+ settings.success(JSON.parse(cachedResponse))
+ }, 100)
+
+ }
+}
+
+alert("This app includes development code. For production, do not forget to remove the reference to openbis-request-cache.js")
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-screening.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-screening.js
new file mode 100644
index 00000000000..a39730902bb
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis-screening.js
@@ -0,0 +1,655 @@
+/**
+ * =======================================================
+ * OpenBIS screening facade internal code (DO NOT USE!!!)
+ * =======================================================
+ */
+
+if(typeof openbis == 'undefined' || typeof _openbisInternal == 'undefined'){
+ alert('Loading of openbis-screening.js failed - openbis.js is missing');
+}
+
+var _openbisInternalGeneric = _openbisInternal;
+
+var _openbisInternal = function(openbisUrlOrNull){
+ this.init(openbisUrlOrNull);
+}
+
+$.extend(_openbisInternal.prototype, _openbisInternalGeneric.prototype);
+
+_openbisInternal.prototype.init = function(openbisUrlOrNull){
+ _openbisInternalGeneric.prototype.init.call(this, openbisUrlOrNull);
+ this.screeningUrl = this.openbisUrl + "/rmi-screening-api-v1.json"
+}
+
+_openbisInternal.prototype.getScreeningDataStoreApiUrlForDataStoreUrl = function(dataStoreUrl){
+ return dataStoreUrl + "/rmi-datastore-server-screening-api-v1.json"
+}
+
+var _openbisGeneric = openbis;
+
+/**
+ * =========================
+ * OpenBIS screening facade
+ * =========================
+ *
+ * The facade provides access to the following services:
+ *
+ * - all services that the generic OpenBIS facade provides (see openbis.js file)
+ * - ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer
+ * - ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening
+ *
+ */
+
+var openbis = function(openbisUrlOrNull){
+ this._internal = new _openbisInternal(openbisUrlOrNull);
+}
+
+$.extend(openbis.prototype, _openbisGeneric.prototype);
+
+/**
+ * ====================================================================================
+ * ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer methods
+ * ====================================================================================
+ */
+
+/**
+ * @see IScreeningApiServer.listPlates(String)
+ * @method
+ */
+openbis.prototype.listPlates = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlates",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlates(String, ExperimentIdentifier)
+ * @method
+ */
+openbis.prototype.listPlatesForExperiment = function(experimentIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlates",
+ "params" : [ this.getSession(), experimentIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getPlateMetadataList(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.getPlateMetadataList = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getPlateMetadataList",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listExperiments(String)
+ * @method
+ */
+openbis.prototype.listAllExperiments = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listExperiments(String, String)
+ * @method
+ */
+openbis.prototype.listExperimentsVisibleToUser = function(userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession(), userId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listFeatureVectorDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listFeatureVectorDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listFeatureVectorDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listImageDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listImageDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listImageDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listRawImageDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listRawImageDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listRawImageDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listSegmentationImageDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listSegmentationImageDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listSegmentationImageDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getDatasetIdentifiers(String, List<String>)
+ * @method
+ */
+openbis.prototype.getDatasetIdentifiers = function(datasetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getDatasetIdentifiers",
+ "params" : [ this.getSession(), datasetCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateWells(String, ExperimentIdentifier, MaterialIdentifier, boolean)
+ * @method
+ */
+openbis.prototype.listPlateWellsForExperimentAndMaterial = function(experimentIdentifer, materialIdentifier, findDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateWells",
+ "params" : [ this.getSession(), experimentIdentifer, materialIdentifier, findDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateWells(String, MaterialIdentifier, boolean)
+ * @method
+ */
+openbis.prototype.listPlateWellsForMaterial = function(materialIdentifier, findDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateWells",
+ "params" : [ this.getSession(), materialIdentifier, findDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateWells(String, PlateIdentifier)
+ * @method
+ */
+openbis.prototype.listPlateWells = function(plateIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateWells",
+ "params" : [ this.getSession(), plateIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getWellSample(String, WellIdentifier)
+ * @method
+ */
+openbis.prototype.getWellSample = function(wellIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getWellSample",
+ "params" : [ this.getSession(), wellIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getPlateSample(String, PlateIdentifier)
+ * @method
+ */
+openbis.prototype.getPlateSample = function(plateIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getPlateSample",
+ "params" : [ this.getSession(), plateIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateMaterialMapping(String, List<PlateIdentifier>, MaterialTypeIdentifier)
+ * @method
+ */
+openbis.prototype.listPlateMaterialMapping = function(plateIdentifiers, materialTypeIdentifierOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateMaterialMapping",
+ "params" : [ this.getSession(), plateIdentifiers, materialTypeIdentifierOrNull ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getExperimentImageMetadata(String, ExperimentIdentifier)
+ * @method
+ */
+openbis.prototype.getExperimentImageMetadata = function(experimentIdentifer, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getExperimentImageMetadata",
+ "params" : [ this.getSession(), experimentIdentifer ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listAvailableFeatureCodes(String, List<? extends IFeatureVectorDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listAvailableFeatureCodes = function(featureDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listAvailableFeatureCodes",
+ "params" : [ this.getSession(), featureDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listAvailableFeatures(String, List<? extends IFeatureVectorDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listAvailableFeatures = function(featureDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listAvailableFeatures",
+ "params" : [ this.getSession(), featureDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadFeatures(String, List<FeatureVectorDatasetReference>, List<String>)
+ * @method
+ */
+openbis.prototype.loadFeatures = function(featureDatasets, featureCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadFeatures",
+ "params" : [ this.getSession(), featureDatasets, featureCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadFeaturesForDatasetWellReferences(String, List<FeatureVectorDatasetWellReference>, List<String>)
+ * @method
+ */
+openbis.prototype.loadFeaturesForDatasetWellReferences = function(datasetWellReferences, featureCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadFeaturesForDatasetWellReferences",
+ "params" : [ this.getSession(), datasetWellReferences, featureCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, boolean)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageConversion = function(imageReferences, convertToPng, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "convertToPng" : convertToPng
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadThumbnailImagesBase64(String, List<PlateImageReference>)
+ * @method
+ */
+openbis.prototype.loadThumbnailImagesBase64ForImageReferences = function(imageReferences, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadThumbnailImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, ImageSize)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageSize = function(imageReferences, size, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "size" : size
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferences = function(imageReferences, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, LoadImageConfiguration)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageConfiguration = function(imageReferences, configuration, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "configuration" : configuration
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, ImageRepresentationFormat)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageRepresentationFormat = function(imageReferences, format, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "format" : format
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, IImageRepresentationFormatSelectionCriterion...)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageRepresentationFormatCriteria = function(imageReferences, criteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "criteria" : criteria
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listImageMetadata(String, List<? extends IImageDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listImageMetadata = function(imageDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listImageMetadata",
+ "params" : [ this.getSession(), imageDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listAvailableImageRepresentationFormats(String, List<? extends IDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listAvailableImageRepresentationFormats = function(imageDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listAvailableImageRepresentationFormats",
+ "params" : [ this.getSession(), imageDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadPhysicalThumbnailsBase64(String, List<PlateImageReference>, ImageRepresentationFormat)
+ * @method
+ */
+openbis.prototype.loadPhysicalThumbnailsBase64ForImageReferencesAndImageRepresentationFormat = function(imageReferences, format, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadPhysicalThumbnailsBase64",
+ "params" : [ this.getSession(), imageReferences, format ] },
+ success: action
+ });
+}
+
+/**
+ * =====================================================================================
+ * ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening methods
+ * =====================================================================================
+ */
+
+/**
+ * @see IDssServiceRpcScreening.loadImagesBase64(String, IDatasetIdentifier, List<WellPosition>, String, ImageSize)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize = function(dataSetIdentifier, wellPositions, channel, thumbnailSizeOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "wellPositions" : wellPositions,
+ "channel" : channel,
+ "thumbnailSizeOrNull" : thumbnailSizeOrNull
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.loadImagesBase64(String, IDatasetIdentifier, String, ImageSize)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize = function(dataSetIdentifier, channel, thumbnailSizeOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channel" : channel,
+ "thumbnailSizeOrNull" : thumbnailSizeOrNull
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.loadThumbnailImagesBase64(String, IDatasetIdentifier, List<String>)
+ * @method
+ */
+openbis.prototype.loadThumbnailImagesBase64ForDataSetIdentifierAndChannels = function(dataSetIdentifier, channels, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "loadThumbnailImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channels" : channels
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listPlateImageReferences(String, IDatasetIdentifier, List<WellPosition>, String)
+ * @method
+ */
+openbis.prototype.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel = function(dataSetIdentifier, wellPositions, channel, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listPlateImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "wellPositions" : wellPositions,
+ "channel" : channel
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listPlateImageReferences(String, IDatasetIdentifier, List<WellPosition>, List<String>)
+ * @method
+ */
+openbis.prototype.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels = function(dataSetIdentifier, wellPositions, channels, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listPlateImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "wellPositions" : wellPositions,
+ "channels" : channels
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listImageReferences(String, IDatasetIdentifier, String)
+ * @method
+ */
+openbis.prototype.listImageReferencesForDataSetIdentifierAndChannel = function(dataSetIdentifier, channel, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channel" : channel
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listImageReferences(String, IDatasetIdentifier, List<String>)
+ * @method
+ */
+openbis.prototype.listImageReferencesForDataSetIdentifierAndChannels = function(dataSetIdentifier, channels, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channels" : channels
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listAvailableFeatureLists(String, IFeatureVectorDatasetIdentifier)
+ * @method
+ */
+openbis.prototype.listAvailableFeatureLists = function(featureVectorDataSet, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(featureVectorDataSet.datastoreServerUrl),
+ data: { "method" : "listAvailableFeatureLists",
+ params : [this.getSession(), featureVectorDataSet]
+ },
+ success: action
+ });
+};
+
+/**
+ * @see IDssServiceRpcScreening.getFeatureList(String, IFeatureVectorDatasetIdentifier, String)
+ * @method
+ */
+openbis.prototype.getFeatureList = function(featureVectorDataSet, featureListCode, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(featureVectorDataSet.datastoreServerUrl),
+ data: { "method" : "getFeatureList",
+ params : [this.getSession(), featureVectorDataSet, featureListCode]
+ },
+ success: action
+ });
+};
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis.js
new file mode 100644
index 00000000000..f5476a74d56
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/openbis.js
@@ -0,0 +1,1987 @@
+/**
+ * =============================================
+ * OpenBIS facade internal code (DO NOT USE!!!)
+ * =============================================
+ */
+
+if(typeof $ == 'undefined'){
+ alert('Loading of openbis.js failed - jquery.js is missing');
+}
+
+function _openbisInternal(openbisUrlOrNull){
+ this.init(openbisUrlOrNull);
+}
+
+_openbisInternal.prototype.init = function(openbisUrlOrNull){
+ this.openbisUrl = this.normalizeOpenbisUrl(openbisUrlOrNull);
+ this.generalInfoServiceUrl = this.openbisUrl + "/rmi-general-information-v1.json";
+ this.generalInfoChangingServiceUrl = this.openbisUrl + "/rmi-general-information-changing-v1.json";
+ this.queryServiceUrl = this.openbisUrl + "/rmi-query-v1.json";
+ this.webInfoServiceUrl = this.openbisUrl + "/rmi-web-information-v1.json"
+}
+
+_openbisInternal.prototype.log = function(msg){
+ if(console){
+ console.log(msg);
+ }
+}
+
+_openbisInternal.prototype.normalizeOpenbisUrl = function(openbisUrlOrNull){
+ var parts = this.parseUri(window.location);
+
+ if(openbisUrlOrNull){
+ var openbisParts = this.parseUri(openbisUrlOrNull);
+
+ for(openbisPartName in openbisParts){
+ var openbisPartValue = openbisParts[openbisPartName];
+
+ if(openbisPartValue){
+ parts[openbisPartName] = openbisPartValue;
+ }
+ }
+ }
+
+ return parts.protocol + "://" + parts.authority + "/openbis/openbis";
+}
+
+_openbisInternal.prototype.jsonRequestData = function(params) {
+ params["id"] = "1";
+ params["jsonrpc"] = "2.0";
+ return JSON.stringify(params)
+}
+
+_openbisInternal.prototype.ajaxRequest = function(settings) {
+ settings.type = "POST";
+ settings.processData = false;
+ settings.dataType = "json";
+ settings.data = this.jsonRequestData(settings.data);
+ settings.success = this.ajaxRequestSuccess(settings.success);
+ // we call the same settings.success function for backward compatibility
+ settings.error = this.ajaxRequestError(settings.success);
+ $.ajax(settings)
+}
+
+_openbisInternal.prototype.ajaxRequestSuccess = function(action){
+ var openbisObj = this;
+ return function(response){
+ if(response.error){
+ openbisObj.log("Request failed: " + JSON.stringify(response.error));
+ }
+ if(action){
+ action(response);
+ }
+ };
+}
+
+_openbisInternal.prototype.ajaxRequestError = function(action){
+ var openbisObj = this;
+ return function(xhr, status, error){
+ openbisObj.log("Request failed: " + error);
+ if(action){
+ action({
+ "error" : "Request failed: " + error
+ });
+ }
+ };
+}
+
+// Functions for working with cookies (see http://www.quirksmode.org/js/cookies.html)
+
+_openbisInternal.prototype.createCookie = function(name,value,days) {
+ if (days) {
+ var date = new Date();
+ date.setTime(date.getTime()+(days*24*60*60*1000));
+ var expires = "; expires="+date.toGMTString();
+ }
+ else var expires = "";
+ document.cookie = name+"="+value+expires+"; path=/";
+}
+
+_openbisInternal.prototype.readCookie = function(name) {
+ var nameEQ = name + "=";
+ var ca = document.cookie.split(';');
+ for(var i=0;i < ca.length;i++) {
+ var c = ca[i];
+ while (c.charAt(0)==' ') c = c.substring(1,c.length);
+ if (c.indexOf(nameEQ) == 0) return c.substring(nameEQ.length,c.length);
+ }
+ return null;
+}
+
+_openbisInternal.prototype.eraseCookie = function(name) {
+ this.createCookie(name,"",-1);
+}
+
+// parseUri 1.2.2 (c) Steven Levithan <stevenlevithan.com> MIT License (see http://blog.stevenlevithan.com/archives/parseuri)
+
+_openbisInternal.prototype.parseUri = function(str) {
+ var options = {
+ strictMode: false,
+ key: ["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"],
+ q: {
+ name: "queryKey",
+ parser: /(?:^|&)([^&=]*)=?([^&]*)/g
+ },
+ parser: {
+ strict: /^(?:([^:\/?#]+):)?(?:\/\/((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?))?((((?:[^?#\/]*\/)*)([^?#]*))(?:\?([^#]*))?(?:#(.*))?)/,
+ loose: /^(?:(?![^:@]+:[^:@\/]*@)([^:\/?#.]+):)?(?:\/\/)?((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/
+ }
+ };
+
+ var o = options,
+ m = o.parser[o.strictMode ? "strict" : "loose"].exec(str),
+ uri = {},
+ i = 14;
+
+ while (i--) uri[o.key[i]] = m[i] || "";
+
+ uri[o.q.name] = {};
+ uri[o.key[12]].replace(o.q.parser, function ($0, $1, $2) {
+ if ($1) uri[o.q.name][$1] = $2;
+ });
+
+ return uri;
+}
+
+_openbisInternal.prototype.listDataStores = function(action){
+ this.ajaxRequest({
+ url: this.generalInfoServiceUrl,
+ data: { "method" : "listDataStores",
+ "params" : [ this.sessionToken ]
+ },
+ success: action
+ });
+}
+
+_openbisInternal.prototype.initDataStores = function(action){
+ var openbisInternal = this;
+
+ if(typeof this.dataStores === "undefined"){
+ this.listDataStores(function(response){
+ if(response.result){
+ openbisInternal.dataStores = response.result;
+ }else{
+ openbisInternal.dataStores = [];
+ }
+ action();
+ });
+ }else{
+ action();
+ }
+}
+
+_openbisInternal.prototype.getDataStoreUrlForDataStoreCode = function(dataStoreCodeOrNull, action) {
+ var openbisInternal = this;
+
+ this.initDataStores(function(){
+ if(openbisInternal.dataStores.length == 0){
+ throw "Couldn't get a data store url as there are no data stores configured.";
+ }else{
+ if(dataStoreCodeOrNull){
+ var dataStoreUrl = null;
+ $.each(openbisInternal.dataStores, function(index, dataStore){
+ if(dataStore.code == dataStoreCodeOrNull){
+ dataStoreUrl = dataStore.downloadUrl;
+ }
+ });
+ if(dataStoreUrl){
+ action(dataStoreUrl);
+ }else{
+ throw "Couldn't get a data store url because data store with " + dataStoreCodeOrNull + " code does not exist.";
+ }
+ }else{
+ if(openbisInternal.dataStores.length == 1){
+ action(openbisInternal.dataStores[0].downloadUrl);
+ }else{
+ throw "There is more than one data store configured. Please specify a data store code to get a data store url.";
+ }
+ }
+ }
+ });
+}
+
+_openbisInternal.prototype.getDataStoreUrlForDataSetCode = function(dataSetCode, action) {
+ var openbisInternal = this;
+
+ this.initDataStores(function(){
+ if(openbisInternal.dataStores.length == 0){
+ throw "Couldn't get a data store url as there are no data stores configured.";
+ }else if(openbisInternal.dataStores.length == 1){
+ action(openbisInternal.dataStores[0].downloadUrl);
+ }else{
+ openbisInternal.ajaxRequest({
+ url: openbisInternal.generalInfoServiceUrl,
+ data: { "method" : "tryGetDataStoreBaseURL",
+ "params" : [ openbisInternal.sessionToken, dataSetCode ]
+ },
+ success: function(response){
+ var hostUrl = response.result;
+
+ if(hostUrl){
+ action(hostUrl + "/datastore_server");
+ }else{
+ throw "Couldn't get a data store url for a data set with " + dataSetCode + " code because the data set does not exist.";
+ }
+ }
+ });
+ }
+ });
+}
+
+_openbisInternal.prototype.getDataStoreApiUrlForDataStoreCode = function(dataStoreCodeOrNull, action) {
+ this.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ action(dataStoreUrl + "/rmi-dss-api-v1.json");
+ });
+}
+
+_openbisInternal.prototype.getDataStoreApiUrlForDataSetCode = function(dataSetCode, action) {
+ this.getDataStoreUrlForDataSetCode(dataSetCode, function(dataStoreUrl){
+ action(dataStoreUrl + "/rmi-dss-api-v1.json");
+ });
+}
+
+_openbisInternal.prototype.getDataStoreHostForDataStoreCode = function(dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ var parts = openbisObj.parseUri(dataStoreUrl);
+ action(parts.protocol + "://" + parts.authority);
+ });
+}
+
+/**
+ * ===============
+ * OpenBIS facade
+ * ===============
+ *
+ * The facade provides access to the following services:
+ *
+ * - ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
+ * - ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
+ * - ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer
+ * - ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
+ * - ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
+ *
+ * @class
+ *
+ */
+
+function openbis(openbisUrlOrNull) {
+ this._internal = new _openbisInternal(openbisUrlOrNull);
+}
+
+/**
+ * ==================================================================================
+ * ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService methods
+ * ==================================================================================
+ */
+
+/**
+ * Log into openBIS.
+ *
+ * @see IGeneralInformationService.tryToAuthenticateForAllServices(String, String)
+ * @method
+ */
+openbis.prototype.login = function(userId, userPassword, action) {
+ var openbisObj = this
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "tryToAuthenticateForAllServices",
+ "params" : [ userId, userPassword ]
+ },
+ success:
+ function(loginResponse) {
+ if(loginResponse.error){
+ alert("Login failed");
+ }else{
+ openbisObj._internal.sessionToken = loginResponse.result;
+ openbisObj.rememberSession();
+ }
+ openbisObj._internal.initDataStores(function(){
+ action(loginResponse);
+ });
+ }
+ });
+}
+
+/**
+ * Stores the current session in a cookie.
+ *
+ * @method
+ */
+openbis.prototype.rememberSession = function() {
+ this._internal.createCookie('openbis', this.getSession(), 1);
+}
+
+/**
+ * Removes the current session from a cookie.
+ *
+ * @method
+ */
+openbis.prototype.forgetSession = function() {
+ this._internal.eraseCookie('openbis');
+}
+
+/**
+ * Restores the current session from a cookie.
+ *
+ * @method
+ */
+openbis.prototype.restoreSession = function() {
+ this._internal.sessionToken = this._internal.readCookie('openbis');
+}
+
+/**
+ * Sets the current session.
+ *
+ * @method
+ */
+openbis.prototype.useSession = function(sessionToken){
+ this._internal.sessionToken = sessionToken;
+}
+
+/**
+ * Returns the current session.
+ *
+ * @method
+ */
+openbis.prototype.getSession = function(){
+ return this._internal.sessionToken;
+}
+
+/**
+ * Checks whether the current session is still active.
+ *
+ * @see IGeneralInformationService.isSessionActive(String)
+ * @method
+ */
+openbis.prototype.isSessionActive = function(action) {
+ if(this.getSession()){
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "isSessionActive",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+ }else{
+ action({ result : false })
+ }
+}
+
+/**
+ * Restores the current session from a cookie and executes
+ * the specified action if the session is still active.
+ *
+ * @see restoreSession()
+ * @see isSessionActive()
+ * @method
+ */
+openbis.prototype.ifRestoredSessionActive = function(action) {
+ this.restoreSession();
+ this.isSessionActive(function(data) { if (data.result) action(data) });
+}
+
+/**
+ * Log out of openBIS.
+ *
+ * @see IGeneralInformationService.logout(String)
+ * @method
+ */
+openbis.prototype.logout = function(action) {
+ this.forgetSession();
+
+ if(this.getSession()){
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "logout",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+ }else if(action){
+ action({ result : null });
+ }
+}
+
+/**
+ * @see IGeneralInformationService.listNamedRoleSets(String)
+ * @method
+ */
+openbis.prototype.listNamedRoleSets = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listNamedRoleSets",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSpacesWithProjectsAndRoleAssignments(String, String)
+ * @method
+ */
+openbis.prototype.listSpacesWithProjectsAndRoleAssignments = function(databaseInstanceCodeOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSpacesWithProjectsAndRoleAssignments",
+ "params" : [ this.getSession(), databaseInstanceCodeOrNull ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForSamples(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForSamples = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForSamples",
+ "params" : [ this.getSession(),
+ searchCriteria ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForSamples(String, SearchCriteria, EnumSet<SampleFetchOption>)
+ * @method
+ */
+openbis.prototype.searchForSamplesWithFetchOptions = function(searchCriteria, fetchOptions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: {
+ "method" : "searchForSamples",
+ "params" : [
+ this.getSession(),
+ searchCriteria,
+ fetchOptions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForSamplesOnBehalfOfUser(String, SearchCriteria, EnumSet<SampleFetchOption>, String)
+ * @method
+ */
+openbis.prototype.searchForSamplesOnBehalfOfUser = function(searchCriteria, fetchOptions, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: {
+ "method" : "searchForSamplesOnBehalfOfUser",
+ "params" : [
+ this.getSession(),
+ searchCriteria,
+ fetchOptions,
+ userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.filterSamplesVisibleToUser(String, List<Sample>, String)
+ * @method
+ */
+openbis.prototype.filterSamplesVisibleToUser = function(allSamples, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: {
+ "method" : "filterSamplesVisibleToUser",
+ "params" : [
+ this.getSession(),
+ allSamples,
+ userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSamplesForExperiment(String, String)
+ * @method
+ */
+openbis.prototype.listSamplesForExperiment = function(experimentIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSamplesForExperiment",
+ "params" : [ this.getSession(), experimentIdentifier ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSamplesForExperimentOnBehalfOfUser(String, String, String)
+ * @method
+ */
+openbis.prototype.listSamplesForExperimentOnBehalfOfUser = function(experimentIdentifier, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSamplesForExperimentOnBehalfOfUser",
+ "params" : [ this.getSession(), experimentIdentifier, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSets(String, List<Sample>)
+ * @method
+ */
+openbis.prototype.listDataSetsForSamples = function(samples, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSets",
+ "params" : [ this.getSession(), samples ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperiments(String, List<Project>, String)
+ * @method
+ */
+openbis.prototype.listExperiments = function(projects, experimentType, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession(), projects, experimentType ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperimentsHavingSamples(String, List<Project>, String)
+ * @method
+ */
+openbis.prototype.listExperimentsHavingSamples = function(projects, experimentType, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperimentsHavingSamples",
+ "params" : [ this.getSession(), projects, experimentType ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperimentsHavingDataSets(String, List<Project>, String)
+ * @method
+ */
+openbis.prototype.listExperimentsHavingDataSets = function(projects, experimentType, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperimentsHavingDataSets",
+ "params" : [ this.getSession(), projects, experimentType ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.filterExperimentsVisibleToUser(String, List<Experiment>, String)
+ * @method
+ */
+openbis.prototype.filterExperimentsVisibleToUser = function(allExperiments, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "filterExperimentsVisibleToUser",
+ "params" : [ this.getSession(), allExperiments, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsForSample(String, Sample, boolean)
+ * @method
+ */
+openbis.prototype.listDataSetsForSample = function(sample, restrictToDirectlyConnected, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsForSample",
+ "params" : [ this.getSession(), sample, restrictToDirectlyConnected ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataStores(String)
+ * @method
+ */
+openbis.prototype.listDataStores = function(action) {
+ this._internal.listDataStores(action);
+}
+
+/**
+ * @see IGeneralInformationService.getDefaultPutDataStoreBaseURL(String)
+ * @method
+ */
+openbis.prototype.getDefaultPutDataStoreBaseURL = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDefaultPutDataStoreBaseURL",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.tryGetDataStoreBaseURL(String)
+ * @method
+ */
+openbis.prototype.tryGetDataStoreBaseURL = function(dataSetCode, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "tryGetDataStoreBaseURL",
+ "params" : [ this.getSession(), dataSetCode ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getDataStoreBaseURLs(String, List<String>)
+ * @method
+ */
+openbis.prototype.getDataStoreBaseURLs = function(dataSetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDataStoreBaseURLs",
+ "params" : [ this.getSession(), dataSetCodes ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetTypes(String)
+ * @method
+ */
+openbis.prototype.listDataSetTypes = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetTypes",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSampleTypes(String)
+ * @method
+ */
+openbis.prototype.listSampleTypes = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSampleTypes",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperimentTypes(String)
+ * @method
+ */
+openbis.prototype.listExperimentTypes = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperimentTypes",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listVocabularies(String)
+ * @method
+ */
+openbis.prototype.listVocabularies = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listVocabularies",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSets(String, List<Sample>, EnumSet<Connections>)
+ * @method
+ */
+openbis.prototype.listDataSetsForSamplesWithConnections = function(samples, connectionsToGet, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSets",
+ "params" : [ this.getSession(), samples, connectionsToGet ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsOnBehalfOfUser(String, List<Sample>, EnumSet<Connections>, String)
+ * @method
+ */
+openbis.prototype.listDataSetsForSamplesOnBehalfOfUser = function(samples, connectionsToGet, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsOnBehalfOfUser",
+ "params" : [ this.getSession(), samples, connectionsToGet, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsForExperiments(String, List<Experiment>, EnumSet<Connections>)
+ * @method
+ */
+openbis.prototype.listDataSetsForExperiments = function(experiments, connectionsToGet, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsForExperiments",
+ "params" : [ this.getSession(), experiments, connectionsToGet ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsForExperimentsOnBehalfOfUser(String, List<Experiment>, EnumSet<Connections>, String)
+ * @method
+ */
+openbis.prototype.listDataSetsForExperimentsOnBehalfOfUser = function(experiments, connectionsToGet, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsForExperimentsOnBehalfOfUser",
+ "params" : [ this.getSession(), experiments, connectionsToGet, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getDataSetMetaData(String, List<String>)
+ * @method
+ */
+openbis.prototype.getDataSetMetaData = function(dataSetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDataSetMetaData",
+ "params" : [ this.getSession(), dataSetCodes ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getDataSetMetaData(String, List<String>, EnumSet<DataSetFetchOption>)
+ * @method
+ */
+openbis.prototype.getDataSetMetaDataWithFetchOptions = function(dataSetCodes, fetchOptions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDataSetMetaData",
+ "params" : [ this.getSession(), dataSetCodes, fetchOptions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForDataSets(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForDataSets = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForDataSets",
+ "params" : [ this.getSession(),
+ searchCriteria ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForDataSetsOnBehalfOfUser(String, SearchCriteria, String)
+ * @method
+ */
+openbis.prototype.searchForDataSetsOnBehalfOfUser = function(searchCriteria, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForDataSetsOnBehalfOfUser",
+ "params" : [ this.getSession(),
+ searchCriteria,
+ userId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.filterDataSetsVisibleToUser(String, List<DataSet>, String)
+ * @method
+ */
+openbis.prototype.filterDataSetsVisibleToUser = function(allDataSets, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "filterDataSetsVisibleToUser",
+ "params" : [ this.getSession(),
+ allDataSets,
+ userId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperiments(String, List<String>)
+ * @method
+ */
+openbis.prototype.listExperimentsForIdentifiers = function(experimentIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession(),
+ experimentIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForExperiments(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForExperiments = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForExperiments",
+ "params" : [ this.getSession(),
+ searchCriteria ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listProjects(String)
+ * @method
+ */
+openbis.prototype.listProjects = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listProjects",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listProjectsOnBehalfOfUser(String, String)
+ * @method
+ */
+openbis.prototype.listProjectsOnBehalfOfUser = function(userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listProjectsOnBehalfOfUser",
+ "params" : [ this.getSession(), userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getMaterialByCodes(String, List<MaterialIdentifier>)
+ * @method
+ */
+openbis.prototype.getMaterialByCodes = function(materialIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getMaterialByCodes",
+ "params" : [ this.getSession(), materialIdentifiers ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForMaterials(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForMaterials = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForMaterials",
+ "params" : [ this.getSession(), searchCriteria ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listMetaprojects(String)
+ * @method
+ */
+openbis.prototype.listMetaprojects = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listMetaprojects",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listMetaprojectsOnBehalfOfUser(String, String)
+ * @method
+ */
+openbis.prototype.listMetaprojectsOnBehalfOfUser = function(userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listMetaprojectsOnBehalfOfUser",
+ "params" : [ this.getSession(), userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getMetaproject(String, IMetaprojectId)
+ * @method
+ */
+openbis.prototype.getMetaproject = function(metaprojectId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getMetaproject",
+ "params" : [ this.getSession(), metaprojectId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getMetaprojectOnBehalfOfUser(String, IMetaprojectId, String)
+ * @method
+ */
+openbis.prototype.getMetaprojectOnBehalfOfUser = function(metaprojectId, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getMetaprojectOnBehalfOfUser",
+ "params" : [ this.getSession(), metaprojectId, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listAttachmentsForProject(String, IProjectId, boolean)
+ * @method
+ */
+openbis.prototype.listAttachmentsForProject = function(projectId, allVersions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listAttachmentsForProject",
+ "params" : [ this.getSession(), projectId, allVersions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listAttachmentsForExperiment(String, IExperimentId, boolean)
+ * @method
+ */
+openbis.prototype.listAttachmentsForExperiment = function(experimentId, allVersions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listAttachmentsForExperiment",
+ "params" : [ this.getSession(), experimentId, allVersions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listAttachmentsForSample(String, ISampleId, boolean)
+ * @method
+ */
+openbis.prototype.listAttachmentsForSample = function(sampleId, allVersions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listAttachmentsForSample",
+ "params" : [ this.getSession(), sampleId, allVersions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * ==========================================================================================
+ * ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService methods
+ * ==========================================================================================
+ */
+
+/**
+ * @see IGeneralInformationChangingService.updateSampleProperties(String, long, Map<String,String>)
+ * @method
+ */
+openbis.prototype.updateSampleProperties = function(sampleId, properties, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "updateSampleProperties",
+ "params" : [ this.getSession(), sampleId, properties ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.addUnofficialVocabularyTerm(String, Long, NewVocabularyTerm)
+ * @method
+ */
+openbis.prototype.addUnofficialVocabularyTerm = function(vocabularyId, term, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "addUnofficialVocabularyTerm",
+ "params" : [ this.getSession(), vocabularyId, term ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.getWebAppSettings(String, String)
+ * @method
+ */
+openbis.prototype.getWebAppSettings = function(webappId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "getWebAppSettings",
+ params : [ this.getSession(), webappId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.setWebAppSettings(String, WebAppSettings)
+ * @method
+ */
+openbis.prototype.setWebAppSettings = function(webappSettings, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "setWebAppSettings",
+ params : [ this.getSession(), webappSettings ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.createMetaproject(String, String, String)
+ * @method
+ */
+openbis.prototype.createMetaproject = function(name, descriptionOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "createMetaproject",
+ params : [ this.getSession(), name, descriptionOrNull ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.updateMetaproject(String, IMetaprojectId, String, String)
+ * @method
+ */
+openbis.prototype.updateMetaproject = function(metaprojectId, name, descriptionOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "updateMetaproject",
+ params : [ this.getSession(), metaprojectId, name, descriptionOrNull ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.deleteMetaproject(String, IMetaprojectId)
+ * @method
+ */
+openbis.prototype.deleteMetaproject = function(metaprojectId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "deleteMetaproject",
+ params : [ this.getSession(), metaprojectId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.addToMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds)
+ * @method
+ */
+openbis.prototype.addToMetaproject = function(metaprojectId, assignmentsToAdd, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "addToMetaproject",
+ params : [ this.getSession(), metaprojectId, assignmentsToAdd ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.removeFromMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds)
+ * @method
+ */
+openbis.prototype.removeFromMetaproject = function(metaprojectId, assignmentsToRemove, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "removeFromMetaproject",
+ params : [ this.getSession(), metaprojectId, assignmentsToRemove ] },
+ success: action
+ });
+}
+
+/**
+ * ============================================================================
+ * ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer methods
+ * ============================================================================
+ */
+
+/**
+ * @see IQueryApiServer.listQueries(String)
+ * @method
+ */
+openbis.prototype.listQueries = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "listQueries",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.executeQuery(String, long, Map<String, String>)
+ * @method
+ */
+openbis.prototype.executeQuery = function(queryId, parameterBindings, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "executeQuery",
+ "params" : [ this.getSession(), queryId, parameterBindings ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.listTableReportDescriptions(String)
+ * @method
+ */
+openbis.prototype.listTableReportDescriptions = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "listTableReportDescriptions",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.createReportFromDataSets(String, String, String, List<String>)
+ * @method
+ */
+openbis.prototype.createReportFromDataSets = function(dataStoreCode, serviceKey, dataSetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "createReportFromDataSets",
+ params : [ this.getSession(), dataStoreCode, serviceKey, dataSetCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.listAggregationServices(String)
+ * @method
+ */
+openbis.prototype.listAggregationServices = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "listAggregationServices",
+ params : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.createReportFromAggregationService(String, String, String, Map<String, Object>)
+ * @method
+ */
+openbis.prototype.createReportFromAggregationService = function(dataStoreCode, serviceKey, parameters, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "createReportFromAggregationService",
+ params : [ this.getSession(), dataStoreCode, serviceKey, parameters ] },
+ success: action
+ });
+}
+
+
+/**
+ * ==============================================================================
+ * ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService methods
+ * ==============================================================================
+ */
+
+/**
+ * Returns the current server side session.
+ *
+ * @see IWebInformationService.getSessionToken()
+ * @method
+ */
+openbis.prototype.getSessionTokenFromServer = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.webInfoServiceUrl,
+ data: { "method" : "getSessionToken" },
+ success: action
+ });
+}
+
+/**
+ * =================================================================================
+ * ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric methods
+ * =================================================================================
+ */
+
+/**
+ * @see IDssServiceRpcGeneric.listFilesForDataSet(String, DataSetFileDTO)
+ * @method
+ */
+openbis.prototype.listFilesForDataSetFile = function(fileOrFolder, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(fileOrFolder.dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "listFilesForDataSet",
+ "params" : [ openbisObj.getSession(), fileOrFolder ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSet(String, DataSetFileDTO)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetFile = function(fileOrFolder, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(fileOrFolder.dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSet",
+ "params" : [ openbisObj.getSession(), fileOrFolder ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Returns a download url that is valid as long as the user session is valid.
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetFileInSession = function(fileOrFolder, action) {
+ this.getDownloadUrlForFileForDataSetInSession(fileOrFolder.dataSetCode, fileOrFolder.path, action);
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSetWithTimeout(String, DataSetFileDTO, long)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetFileWithTimeout = function(fileOrFolder, validityDurationInSeconds, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(fileOrFolder.dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSetWithTimeout",
+ "params" : [ openbisObj.getSession(), fileOrFolder, validityDurationInSeconds ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.listFilesForDataSet(String, String, String, boolean)
+ * @method
+ */
+openbis.prototype.listFilesForDataSet = function(dataSetCode, path, recursive, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "listFilesForDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, path, recursive ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSet = function(dataSetCode, path, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, path ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Returns a download url that is valid as long as the user session is valid.
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetInSession = function(dataSetCode, path, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreUrlForDataSetCode(dataSetCode, function(dataStoreUrl){
+ var pathWithoutSlash = path.charAt(0) == "/" ? path.substr(1) : path;
+ var url = dataStoreUrl + "/" + dataSetCode + "/" + pathWithoutSlash + "?sessionID=" + openbisObj.getSession();
+ action(url);
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSetWithTimeout(String, String, String, long)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetWithTimeout = function(dataSetCode, path, validityDurationInSeconds, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSetWithTimeout",
+ "params" : [ openbisObj.getSession(), dataSetCode, path, validityDurationInSeconds ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Creates a session workspace file uploader inside the specified uploaderContainer element and for the default data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceUploader = function(uploaderContainer, oncomplete){
+ this.createSessionWorkspaceUploaderForDataStore(uploaderContainer, null, oncomplete);
+}
+
+/**
+ * Creates a session workspace file uploader inside the specified uploaderContainer element and for the specified data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceUploaderForDataStore = function(uploaderContainer, dataStoreCodeOrNull, oncomplete){
+ var uploaderSupported = window.File && window.FileReader && window.XMLHttpRequest;
+
+ if(!uploaderSupported){
+ alert("Uploader is not supported by your browser.");
+ return;
+ }
+
+ var $this = this;
+ this._internal.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ // figure out what is the location of the openbis.js script and assume that uploader resources are served by the same server
+ var openbisScriptLocation = $('script[src*=openbis\\.js]').attr('src');
+ var uploaderDirectoryLocation = jsFileLocation = openbisScriptLocation.replace(/js\/openbis\.js/g, 'uploader');
+
+ $('head').append('<link rel="stylesheet" media="screen" type="text/css" href="' + uploaderDirectoryLocation + '/css/src/upload.css" />');
+ $('head').append('<script charset="utf-8" type="text/javascript" src="' + uploaderDirectoryLocation + '/js/src/upload.js" />');
+
+ $(uploaderContainer).load(uploaderDirectoryLocation + "/index.html", function(){
+ Uploader.init({
+ smart_mode: true,
+ chunk_size: 1000*1024,
+ file_upload_url: dataStoreUrl + "/session_workspace_file_upload",
+ form_upload_url: dataStoreUrl + "/session_workspace_form_upload",
+ file_download_url: dataStoreUrl + "/session_workspace_file_download",
+ oncomplete: oncomplete,
+ sessionID: $this.getSession()
+ });
+ });
+ });
+}
+
+/**
+ * Creates a session workspace download url for a file with the specified filePath and for the default data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadUrl = function(filePath, action){
+ return this.createSessionWorkspaceDownloadUrlForDataStore(filePath, null, action);
+}
+
+/**
+ * Creates a session workspace download url for a file with the specified filePath and for the specified data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadUrlForDataStore = function(filePath, dataStoreCodeOrNull, action){
+ var openbisObj = this;
+
+ this._internal.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ var downloadUrl = dataStoreUrl + "/session_workspace_file_download?sessionID=" + openbisObj.getSession() + "&filePath=" + filePath;
+ action(downloadUrl);
+ });
+}
+
+/**
+ * Create a session workspace download link for a file with the specified filePath at the default data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadLink = function(filePath, linkText, action){
+ return this.createSessionWorkspaceDownloadLinkForDataStore(filePath, linkText, null, action);
+}
+
+/**
+ * Create a session workspace download link for a file with the specified filePath at the specified data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadLinkForDataStore = function(filePath, linkText, dataStoreCodeOrNull, action){
+ this.createSessionWorkspaceDownloadUrlForDataStore(filePath, dataStoreCodeOrNull, function(downloadUrl){
+ var link = $("<a href='" + downloadUrl + "'>" + (linkText ? linkText : filePath) + "</a>");
+ action(link);
+ });
+}
+
+/**
+ * Downloads a session workspace file with the specified filePath from the default data store.
+ * @method
+ */
+openbis.prototype.downloadSessionWorkspaceFile = function(filePath, action) {
+ this.downloadSessionWorkspaceFileForDataStore(filePath, null, action);
+}
+
+/**
+ * Downloads a session workspace file with the specified filePath from the specified data store.
+ * @method
+ */
+openbis.prototype.downloadSessionWorkspaceFileForDataStore = function(filePath, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this.createSessionWorkspaceDownloadUrlForDataStore(filePath, dataStoreCodeOrNull, function(downloadUrl){
+ $.ajax({
+ type: "GET",
+ dataType: "text",
+ url: downloadUrl,
+ success: openbisObj._internal.ajaxRequestSuccess(action),
+ error: openbisObj._internal.ajaxRequestError(action)
+ });
+ });
+}
+
+/**
+ * Deletes a session workspace file with the specified filePath from the default data store.
+ * @method
+ */
+openbis.prototype.deleteSessionWorkspaceFile = function(filePath, action) {
+ this.deleteSessionWorkspaceFileForDataStore(filePath, null, action)
+}
+
+/**
+ * Deletes a session workspace file with the specified filePath from the specified data store.
+ * @method
+ */
+openbis.prototype.deleteSessionWorkspaceFileForDataStore = function(filePath, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreApiUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: {
+ "method" : "deleteSessionWorkspaceFile",
+ "params" : [ openbisObj.getSession(), filePath ]
+ },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getPathToDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.getPathToDataSet = function(dataSetCode, overrideStoreRootPathOrNull, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getPathToDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, overrideStoreRootPathOrNull ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.tryGetPathToDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.tryGetPathToDataSet = function(dataSetCode, overrideStoreRootPathOrNull, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "tryGetPathToDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, overrideStoreRootPathOrNull ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * List shares from the default data store.
+ *
+ * @see IDssServiceRpcGeneric.listAllShares(String)
+ * @method
+ */
+openbis.prototype.listAllShares = function(action) {
+ this.listAllSharesForDataStore(null, action);
+}
+
+/**
+ * List shares from the specified data store.
+ *
+ * @see IDssServiceRpcGeneric.listAllShares(String)
+ * @method
+ */
+openbis.prototype.listAllSharesForDataStore = function(dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreApiUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: {
+ "method" : "listAllShares",
+ "params" : [ openbisObj.getSession() ]
+ },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.shuffleDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.shuffleDataSet = function(dataSetCode, shareId, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "shuffleDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, shareId ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Get a validation script from the default data store.
+ *
+ * @see IDssServiceRpcGeneric.getValidationScript(String, String)
+ * @method
+ */
+openbis.prototype.getValidationScript = function(dataSetTypeOrNull, action) {
+ this.getValidationScriptForDataStore(dataSetTypeOrNull, null, action);
+}
+
+/**
+ * Get a validation script from the specified data store.
+ *
+ * @see IDssServiceRpcGeneric.getValidationScript(String, String)
+ * @method
+ */
+openbis.prototype.getValidationScriptForDataStore = function(dataSetTypeOrNull, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreApiUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: {
+ "method" : "getValidationScript",
+ "params" : [ openbisObj.getSession(), dataSetTypeOrNull ]
+ },
+ success: action
+ });
+ });
+}
+
+/**
+ * Get a url that will produce a graph with the given configuration at the default data store.
+ *
+ * @method
+ */
+openbis.prototype.getGraphUrl = function(graphConfig, action) {
+ this.getGraphUrlForDataStore(graphConfig, null, action);
+}
+
+/**
+ * Get a url that will produce a graph with the given configuration at the specified data store.
+ *
+ * @method
+ */
+openbis.prototype.getGraphUrlForDataStore = function(graphConfig, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreHostForDataStoreCode(dataStoreCodeOrNull, function(dataStoreHost) {
+ var graphUrl = dataStoreHost + "/graphservice/?sessionID=" + openbisObj.getSession();
+ for (prop in graphConfig) {
+ graphUrl += "&" + prop + "=" + encodeURIComponent(graphConfig[prop]);
+ }
+ action(graphUrl);
+ });
+}
+
+/**
+ * =====================
+ * OpenBIS graph config
+ * =====================
+ *
+ * Defines the configuration for a graph generated by the server's graphservice.
+ *
+ * To use, set properties on the object with keys that match the name of the servlet
+ * parameters of the graphservice and then call the method getGraphUrl on the openbis
+ * object. Do *not* set the sessionID paramter -- this will be filled in by the openbis
+ * object.
+ *
+ * The graphservice is documented here: https://wiki-bsse.ethz.ch/display/openBISDoc/Configuring+Graphs+and+Plots
+ *
+ * @class
+ *
+ */
+function openbisGraphConfig(filename, graphtype, title) {
+ this.file = filename;
+ this["graph-type"] = graphtype;
+ this.title = title;
+}
+
+
+/**
+ * =====================================================
+ * OpenBIS webapp context internal code (DO NOT USE!!!)
+ * =====================================================
+ */
+
+function _openbisWebAppContextInternal(){
+ this.webappCode = this.getParameter("webapp-code");
+ this.sessionId = this.getParameter("session-id");
+ this.entityKind = this.getParameter("entity-kind");
+ this.entityType = this.getParameter("entity-type");
+ this.entityIdentifier = this.getParameter("entity-identifier");
+ this.entityPermId = this.getParameter("entity-perm-id");
+}
+
+_openbisWebAppContextInternal.prototype.getParameter = function(parameterName){
+ var match = location.search.match(RegExp("[?|&]"+parameterName+'=(.+?)(&|$)'));
+ if(match && match[1]){
+ return decodeURIComponent(match[1].replace(/\+/g,' '));
+ }else{
+ return null;
+ }
+}
+
+/**
+ * =======================
+ * OpenBIS webapp context
+ * =======================
+ *
+ * Provides a context information for webapps that are embedded inside the OpenBIS UI.
+ *
+ * @class
+ *
+ */
+function openbisWebAppContext(){
+ this._internal = new _openbisWebAppContextInternal();
+}
+
+openbisWebAppContext.prototype.getWebappCode = function(){
+ return this._internal.webappCode;
+}
+
+openbisWebAppContext.prototype.getSessionId = function(){
+ return this._internal.sessionId;
+}
+
+openbisWebAppContext.prototype.getEntityKind = function(){
+ return this._internal.entityKind;
+}
+
+openbisWebAppContext.prototype.getEntityType = function(){
+ return this._internal.entityType;
+}
+
+openbisWebAppContext.prototype.getEntityIdentifier = function(){
+ return this._internal.entityIdentifier;
+}
+
+openbisWebAppContext.prototype.getEntityPermId = function(){
+ return this._internal.entityPermId;
+}
+
+openbisWebAppContext.prototype.getParameter = function(parameterName){
+ return this._internal.getParameter(parameterName);
+}
+
+/**
+ * =======================
+ * OpenBIS Search Criteria
+ * =======================
+ *
+ * Methods and classes for constructing search criteria objects for use in searches.
+ */
+
+/**
+ * It is easier to construct instances of match clauses using one of the factory methods:
+ *
+ * createPropertyMatch
+ * createAttributeMatch
+ * createTimeAttributeMatch
+ * createAnyPropertyMatch
+ * createAnyFieldMatch
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
+ * @class
+ */
+function SearchCriteriaMatchClause(type, fieldType, fieldCode, desiredValue) {
+ this["@type"] = type;
+ this["fieldType"] = fieldType;
+ this["fieldCode"] = fieldCode;
+ this["desiredValue"] = desiredValue;
+ // compareMode should be one of "LESS_THAN_OR_EQUAL", "EQUALS", "GREATER_THAN_OR_EQUAL"
+ this["compareMode"] = "EQUALS";
+}
+
+/**
+ * Factory method to create a match for a property.
+ *
+ * @param propertyCode The code of the property to compare against
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createPropertyMatch(String, String)
+ * @method
+ */
+SearchCriteriaMatchClause.createPropertyMatch = function(propertyCode, desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("PropertyMatchClause", "PROPERTY", propertyCode, desiredValue);
+ matchClause["propertyCode"] = propertyCode;
+ return matchClause;
+}
+
+/**
+ * Factory method to create a match for an attribute.
+ *
+ * @param attribute Should be a valid ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute.
+ * It should come from this list:
+ * // common
+ * "CODE", "TYPE", "PERM_ID",
+ * // for sample or experiment
+ * "SPACE",
+ * // for experiment
+ * "PROJECT",
+ * // for all types of entities
+ * "METAPROJECT"
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAttributeMatch(MatchClauseAttribute, String)
+ * @method
+ */
+SearchCriteriaMatchClause.createAttributeMatch = function(attribute, desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("AttributeMatchClause", "ATTRIBUTE", attribute, desiredValue);
+ matchClause["attribute"] = attribute;
+ return matchClause;
+}
+
+/**
+ * Factory method to create a MatchClause matching against registration or modification
+ * date.
+ *
+ * @param attribute Should be a valid ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
+ * It should come from this list: REGISTRATION_DATE, MODIFICATION_DATE
+ *
+ * @param mode One of "LESS_THAN_OR_EQUAL", "EQUALS", "GREATER_THAN_OR_EQUAL"
+ * @param date The date to compare against, format YYYY-MM-DD
+ * @timezone The time zone of the date ("+1", "-5", "0", etc.)
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAttributeMatch(MatchClauseTimeAttribute, CompareMode, String, String)
+ * @method
+ */
+SearchCriteriaMatchClause.createTimeAttributeMatch = function(attribute, mode, date, timezone)
+{
+ var matchClause = new SearchCriteriaMatchClause("TimeAttributeMatchClause", "ATTRIBUTE", attribute, date);
+ matchClause["attribute"] = attribute;
+ matchClause["compareMode"] = mode;
+ matchClause["timeZone"] = timezone;
+ return matchClause;
+}
+
+/**
+ * Factory method to create a match for against any property.
+ *
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAnyPropertyMatch(String)
+ * @method
+ */
+SearchCriteriaMatchClause.createAnyPropertyMatch = function(desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("AnyPropertyMatchClause", "ANY_PROPERTY", null, desiredValue);
+ return matchClause;
+}
+
+/**
+ * Factory method to create a match for against any field (property or attribute).
+ *
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAnyFieldMatch(String)
+ * @method
+ */
+SearchCriteriaMatchClause.createAnyFieldMatch = function(desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("AnyFieldMatchClause", "ANY_FIELD", null, desiredValue);
+ return matchClause;
+}
+
+/**
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
+ * @class
+ */
+function SearchCriteria() {
+ this["@type"] = "SearchCriteria";
+ // operator should be either of "MATCH_ALL_CLAUSES" or "MATCH_ANY_CLAUSES"
+ this["operator"] = "MATCH_ALL_CLAUSES";
+ this["matchClauses"] = [];
+ this["subCriterias"] = [];
+}
+
+/**
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.addMatchClause(MatchClause)
+ * @method
+ */
+SearchCriteria.prototype.addMatchClause = function(matchClause) {
+ this["matchClauses"].push(matchClause);
+};
+
+/**
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.addSubCriteria(SearchSubCriteria)
+ * @method
+ */
+SearchCriteria.prototype.addSubCriteria = function(subCriteria) {
+ this["subCriterias"].push(subCriteria);
+};
+
+
+/**
+ * It is easier to construct instances of sub criteria using one of the factory methods:
+ *
+ * createSampleParentCriteria
+ * createSampleChildCriteria
+ * createSampleContainerCriteria
+ * createSampleCriteria
+ * createExperimentCriteria
+ * createDataSetContainerCriteria
+ * createDataSetParentCriteria
+ * createDataSetChildCriteria
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
+ * @class
+ */
+function SearchSubCriteria(targetEntityKind, searchCriteria) {
+ this["@type"] = "SearchSubCriteria";
+ this["targetEntityKind"] = targetEntityKind;
+ this["criteria"] = searchCriteria;
+}
+
+/**
+ * Factory method to create a match for a sample parent.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleParentCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleParentCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE_PARENT", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a sample child.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleChildCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleChildCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE_CHILD", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a sample container.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleContainerCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleContainerCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE_CONTAINER", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a sample.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for an experiment.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createExperimentCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createExperimentCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("EXPERIMENT", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a data set container.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createDataSetContainerCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createDataSetContainerCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("DATA_SET_CONTAINER", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a data set parent.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createDataSetParentCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createDataSetParentCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("DATA_SET_PARENT", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a data set child.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createDataSetChildCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createDataSetChildCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("DATA_SET_CHILD", searchCriteria)
+}
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/spin.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/spin.min.js
new file mode 100644
index 00000000000..942980c82a0
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/html/spin.min.js
@@ -0,0 +1,2 @@
+//fgnass.github.com/spin.js#v1.2.7
+!function(e,t,n){function o(e,n){var r=t.createElement(e||"div"),i;for(i in n)r[i]=n[i];return r}function u(e){for(var t=1,n=arguments.length;t<n;t++)e.appendChild(arguments[t]);return e}function f(e,t,n,r){var o=["opacity",t,~~(e*100),n,r].join("-"),u=.01+n/r*100,f=Math.max(1-(1-e)/t*(100-u),e),l=s.substring(0,s.indexOf("Animation")).toLowerCase(),c=l&&"-"+l+"-"||"";return i[o]||(a.insertRule("@"+c+"keyframes "+o+"{"+"0%{opacity:"+f+"}"+u+"%{opacity:"+e+"}"+(u+.01)+"%{opacity:1}"+(u+t)%100+"%{opacity:"+e+"}"+"100%{opacity:"+f+"}"+"}",a.cssRules.length),i[o]=1),o}function l(e,t){var i=e.style,s,o;if(i[t]!==n)return t;t=t.charAt(0).toUpperCase()+t.slice(1);for(o=0;o<r.length;o++){s=r[o]+t;if(i[s]!==n)return s}}function c(e,t){for(var n in t)e.style[l(e,n)||n]=t[n];return e}function h(e){for(var t=1;t<arguments.length;t++){var r=arguments[t];for(var i in r)e[i]===n&&(e[i]=r[i])}return e}function p(e){var t={x:e.offsetLeft,y:e.offsetTop};while(e=e.offsetParent)t.x+=e.offsetLeft,t.y+=e.offsetTop;return t}var r=["webkit","Moz","ms","O"],i={},s,a=function(){var e=o("style",{type:"text/css"});return u(t.getElementsByTagName("head")[0],e),e.sheet||e.styleSheet}(),d={lines:12,length:7,width:5,radius:10,rotate:0,corners:1,color:"#000",speed:1,trail:100,opacity:.25,fps:20,zIndex:2e9,className:"spinner",top:"auto",left:"auto",position:"relative"},v=function m(e){if(!this.spin)return new m(e);this.opts=h(e||{},m.defaults,d)};v.defaults={},h(v.prototype,{spin:function(e){this.stop();var t=this,n=t.opts,r=t.el=c(o(0,{className:n.className}),{position:n.position,width:0,zIndex:n.zIndex}),i=n.radius+n.length+n.width,u,a;e&&(e.insertBefore(r,e.firstChild||null),a=p(e),u=p(r),c(r,{left:(n.left=="auto"?a.x-u.x+(e.offsetWidth>>1):parseInt(n.left,10)+i)+"px",top:(n.top=="auto"?a.y-u.y+(e.offsetHeight>>1):parseInt(n.top,10)+i)+"px"})),r.setAttribute("aria-role","progressbar"),t.lines(r,t.opts);if(!s){var f=0,l=n.fps,h=l/n.speed,d=(1-n.opacity)/(h*n.trail/100),v=h/n.lines;(function m(){f++;for(var e=n.lines;e;e--){var i=Math.max(1-(f+e*v)%h*d,n.opacity);t.opacity(r,n.lines-e,i,n)}t.timeout=t.el&&setTimeout(m,~~(1e3/l))})()}return t},stop:function(){var e=this.el;return e&&(clearTimeout(this.timeout),e.parentNode&&e.parentNode.removeChild(e),this.el=n),this},lines:function(e,t){function i(e,r){return c(o(),{position:"absolute",width:t.length+t.width+"px",height:t.width+"px",background:e,boxShadow:r,transformOrigin:"left",transform:"rotate("+~~(360/t.lines*n+t.rotate)+"deg) translate("+t.radius+"px"+",0)",borderRadius:(t.corners*t.width>>1)+"px"})}var n=0,r;for(;n<t.lines;n++)r=c(o(),{position:"absolute",top:1+~(t.width/2)+"px",transform:t.hwaccel?"translate3d(0,0,0)":"",opacity:t.opacity,animation:s&&f(t.opacity,t.trail,n,t.lines)+" "+1/t.speed+"s linear infinite"}),t.shadow&&u(r,c(i("#000","0 0 4px #000"),{top:"2px"})),u(e,u(r,i(t.color,"0 0 1px rgba(0,0,0,.1)")));return e},opacity:function(e,t,n){t<e.childNodes.length&&(e.childNodes[t].style.opacity=n)}}),function(){function e(e,t){return o("<"+e+' xmlns="urn:schemas-microsoft.com:vml" class="spin-vml">',t)}var t=c(o("group"),{behavior:"url(#default#VML)"});!l(t,"transform")&&t.adj?(a.addRule(".spin-vml","behavior:url(#default#VML)"),v.prototype.lines=function(t,n){function s(){return c(e("group",{coordsize:i+" "+i,coordorigin:-r+" "+ -r}),{width:i,height:i})}function l(t,i,o){u(a,u(c(s(),{rotation:360/n.lines*t+"deg",left:~~i}),u(c(e("roundrect",{arcsize:n.corners}),{width:r,height:n.width,left:n.radius,top:-n.width>>1,filter:o}),e("fill",{color:n.color,opacity:n.opacity}),e("stroke",{opacity:0}))))}var r=n.length+n.width,i=2*r,o=-(n.width+n.length)*2+"px",a=c(s(),{position:"absolute",top:o,left:o}),f;if(n.shadow)for(f=1;f<=n.lines;f++)l(f,-2,"progid:DXImageTransform.Microsoft.Blur(pixelradius=2,makeshadow=1,shadowopacity=.3)");for(f=1;f<=n.lines;f++)l(f);return u(t,a)},v.prototype.opacity=function(e,t,n,r){var i=e.firstChild;r=r.shadow&&r.lines||0,i&&t+r<i.childNodes.length&&(i=i.childNodes[t+r],i=i&&i.firstChild,i=i&&i.firstChild,i&&(i.opacity=n))}):s=l(t,"animation")}(),typeof define=="function"&&define.amd?define(function(){return v}):e.Spinner=v}(window,document);
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/plugin.properties
new file mode 100644
index 00000000000..fdd65d79fa0
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/.gc3pie/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = data-set-details-view
+data-set-entity-types = FASTQ_GZ
+label = Bowtie2 Alignment
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/html/index.html
new file mode 100644
index 00000000000..330d7af0d6b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/html/index.html
@@ -0,0 +1,428 @@
+<head>
+ <title>Quantitative Genomics Facility</title>
+ <link rel="stylesheet" href="//maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css">
+ <script type="text/javascript" src="/openbis/resources/js/d3.v3.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/spin.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-dsu.js"></script>
+ <script type="text/javascript" src="//maxcdn.bootstrapcdn.com/bootstrap/3.2.0/js/bootstrap.min.js"></script>
+ <!-- To speed development, cache the requests -->
+ <!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
+ <script>
+
+ dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+ var vis;
+ var didCreateVis = false;
+ var context = new openbisWebAppContext();
+
+ $(document).ready(function () {
+ refresh();
+ setInterval(refresh, 600000);
+ });
+
+ function createVis() {
+ if (didCreateVis) return;
+ vis = d3.select("#main").append("div").attr("id", "vis");
+ didCreateVis = true;
+ }
+
+ function enableSubmission() {
+ $('#submitBtn').prop('disabled', false);
+ }
+
+ function disableSubmission() {
+ $('#submitBtn').prop('disabled', true);
+ }
+
+ function displayReturnedTable(data) {
+ if (data.error) {
+ console.log(data.error);
+ vis.append("p").text("Could not retrieve data.");
+ return;
+ }
+
+ var dataToShow = data.result;
+ console.log(dataToShow.rows[0][0].value);
+
+ d3.select("#progress").remove()
+ d3.select("#button-group").remove()
+
+ vis.append("p").text("");
+ // Pick all div elements of the visualization
+ vis.selectAll("div").attr("class", "alert")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .attr("class", function (row) {
+ if (row[0].value == 0 || row[0].value > 99) {
+ if(row[0].value == 100)
+ enableSubmission();
+ if(row[0].value == 101)
+ disableSubmission();
+ return "alert alert-success";
+ }
+ return "alert alert-danger";
+ })
+ .html(function (row) {
+ return row[1].value;
+ })
+
+ var button = d3.select("#container")
+ .append("div")
+
+ button.selectAll("button")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .append("button")
+ .attr("id", function (row) {
+ return row[0].value;
+ })
+ .attr("class", function (row) {
+ if (row[0].value == 100) {
+ return "btn btn-success";
+ }
+ return "btn btn-danger";
+ })
+ //.attr("onclick", function(row) { return "callIngestionSetInvoice('" + row + "');" })
+ .text(function (row) {
+ if (row[0].value == 0) {
+ return "OK" ;
+ }
+ return "Fail";
+ });
+
+ }
+
+ function hideButtons(data) {
+ var buttonId = data.result.rows[0][0].value;
+ d3.select("#setInvoice").remove()
+ d3.select("#main").append("div").attr("id", "Done").append("p").text("Done " + buttonId);
+ d3.select("button#" + String(buttonId)).remove();
+ }
+
+ function spinner(target) {
+ var opts = {
+ lines: 13, // The number of lines to draw
+ length: 7, // The length of each line
+ width: 4, // The line thickness
+ radius: 10, // The radius of the inner circle
+ corners: 1, // Corner roundness (0..1)
+ rotate: 0, // The rotation offset
+ color: '#000', // #rgb or #rrggbb
+ speed: 1, // Rounds per second
+ trail: 60, // Afterglow percentage
+ shadow: false, // Whether to render a shadow
+ hwaccel: false, // Whether to use hardware acceleration
+ className: 'spinner', // The CSS class to assign to the spinner
+ zIndex: 2e9, // The z-index (defaults to 2000000000)
+ top: 250, // Top position relative to parent in px
+ left: 'auto' // Left position relative to parent in px
+ };
+ var spinner = new Spinner(opts).spin(target);
+ }
+
+
+ function callIngestionService(method) {
+ var permIdentifier = context.getEntityIdentifier()
+ //var mySendEmail = $("#sendEmail").is(':checked')
+ var clusteroptions = "brutus"
+ var bowtieParameters = $("#Bowtie2Paramter").val()
+
+ if ($('#brutus').is(':active')) {
+ clusteroptions = 'brutus';
+ }
+ if ($('#bsseGrid').is(':active')) {
+ clusteroptions = 'bsseGrid';
+ }
+
+
+ d3.select("#main").select("#progress").remove()
+ d3.select("#main").select("#vis").remove()
+ didCreateVis = false;
+ dsu.server.useSession(context.getSessionId());
+ createVis()
+
+ myUserId = context.getSessionId().split("-")[0];
+
+ var parameters =
+ {
+ permId: permIdentifier,
+ //sendEmail: mySendEmail,
+ bowtieParam: bowtieParameters,
+ clusteroptionsParam : clusteroptions,
+ userId : myUserId,
+ method: method
+ };
+ console.log(parameters)
+
+ //d3.select("#main").append("div").attr("id", "progress").append("p").text("Starting Job...");
+ var target = document.getElementById('progress');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "triggerbee", parameters, displayReturnedTable);
+ }
+
+ function refresh() {
+ callIngestionService("pollJob")
+
+ }
+
+
+ </script>
+</head>
+<body>
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+
+ <h2>Bowtie 2
+ <small>Read Alignment</small>
+ </h2>
+ </div>
+ </div>
+</div>
+
+<br>
+
+<p>
+
+
+
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div class="btn-group">
+ <button type="button" class="btn btn-default" id="brutus"> ETHZ Brutus Cluster </button>
+ <button type="button" class="btn btn-default" id="bsseGrid"> BSSE Grid </button>
+
+ </div>
+ </div>
+ </div>
+</div>
+</p>
+
+<p>
+
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <form role="form">
+ <div class="form-group">
+ <label>Parameters</label>
+ <input type="text" class="form-control" id="Bowtie2Paramter"
+ placeholder="e.g. --very-sensitive --phred33 -q">
+ </div>
+ </form>
+ </div>
+ </div>
+</div>
+</p>
+
+<p>
+<!--
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div class="checkbox">
+ <label>
+ <input type="checkbox" id="sendEmail"> Send Email when job finished
+ </label>
+ </div>
+ </div>
+ </div>
+</div>
+-->
+</p>
+
+<p>
+
+<div class="container">
+ <div class="row">
+ <div class="col-md-3">
+ <button class="btn btn-default" type="submit"
+ "createInvoice-button" id="submitBtn" onclick="callIngestionService('startJob');">Start Bowtie2</button>
+ <button type="button" class="btn btn-default" onclick="refresh();">
+ <span class="glyphicon glyphicon-refresh"></span> Refresh
+ </button>
+ </div>
+ </div>
+</div>
+</p>
+
+<br>
+
+<p>
+
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div class="panel-group" id="accordion">
+ <div class="panel panel-default">
+ <div class="panel-heading">
+ <h6 div class="panel-title">
+ <a class="accordion-toggle" data-toggle="collapse" data-parent="#accordion"
+ href="#collapseOne">
+ Available Bowtie 2 Parameters
+ </a>
+ </div>
+ </h6>
+ </div>
+ <div id="collapseOne" class="panel-collapse collapse">
+ <div class="panel-body">
+ <pre>
+Usage:
+ bowtie2 [options]* -x <bt2-idx> {-1 <m1> -2 <m2> | -U <r>} [-S <sam>]
+
+ <bt2-idx> Index filename prefix (minus trailing .X.bt2).
+ NOTE: Bowtie 1 and Bowtie 2 indexes are not compatible.
+ <m1> Files with #1 mates, paired with files in <m2>.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <m2> Files with #2 mates, paired with files in <m1>.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <r> Files with unpaired reads.
+ Could be gzip'ed (extension: .gz) or bzip2'ed (extension: .bz2).
+ <sam> File for SAM output (default: stdout)
+
+ <m1>, <m2>, <r> can be comma-separated lists (no whitespace) and can be
+ specified many times. E.g. '-U file1.fq,file2.fq -U file3.fq'.
+
+Options (defaults in parentheses):
+
+ Input:
+ -q query input files are FASTQ .fq/.fastq (default)
+ --qseq query input files are in Illumina's qseq format
+ -f query input files are (multi-)FASTA .fa/.mfa
+ -r query input files are raw one-sequence-per-line
+ -c <m1>, <m2>, <r> are sequences themselves, not files
+ -s/--skip <int> skip the first <int> reads/pairs in the input (none)
+ -u/--upto <int> stop after first <int> reads/pairs (no limit)
+ -5/--trim5 <int> trim <int> bases from 5'/left end of reads (0)
+ -3/--trim3 <int> trim <int> bases from 3'/right end of reads (0)
+ --phred33 qualities are Phred+33 (default)
+ --phred64 qualities are Phred+64
+ --int-quals qualities encoded as space-delimited integers
+
+ Presets: Same as:
+ For --end-to-end:
+ --very-fast -D 5 -R 1 -N 0 -L 22 -i S,0,2.50
+ --fast -D 10 -R 2 -N 0 -L 22 -i S,0,2.50
+ --sensitive -D 15 -R 2 -N 0 -L 22 -i S,1,1.15 (default)
+ --very-sensitive -D 20 -R 3 -N 0 -L 20 -i S,1,0.50
+
+ For --local:
+ --very-fast-local -D 5 -R 1 -N 0 -L 25 -i S,1,2.00
+ --fast-local -D 10 -R 2 -N 0 -L 22 -i S,1,1.75
+ --sensitive-local -D 15 -R 2 -N 0 -L 20 -i S,1,0.75 (default)
+ --very-sensitive-local -D 20 -R 3 -N 0 -L 20 -i S,1,0.50
+
+ Alignment:
+ -N <int> max # mismatches in seed alignment; can be 0 or 1 (0)
+ -L <int> length of seed substrings; must be >3, <32 (22)
+ -i <func> interval between seed substrings w/r/t read len (S,1,1.15)
+ --n-ceil <func> func for max # non-A/C/G/Ts permitted in aln (L,0,0.15)
+ --dpad <int> include <int> extra ref chars on sides of DP table (15)
+ --gbar <int> disallow gaps within <int> nucs of read extremes (4)
+ --ignore-quals treat all quality values as 30 on Phred scale (off)
+ --nofw do not align forward (original) version of read (off)
+ --norc do not align reverse-complement version of read (off)
+
+ --end-to-end entire read must align; no clipping (on)
+ OR
+ --local local alignment; ends might be soft clipped (off)
+
+ Scoring:
+ --ma <int> match bonus (0 for --end-to-end, 2 for --local)
+ --mp <int> max penalty for mismatch; lower qual = lower penalty (6)
+ --np <int> penalty for non-A/C/G/Ts in read/ref (1)
+ --rdg <int>,<int> read gap open, extend penalties (5,3)
+ --rfg <int>,<int> reference gap open, extend penalties (5,3)
+ --score-min <func> min acceptable alignment score w/r/t read length
+ (G,20,8 for local, L,-0.6,-0.6 for end-to-end)
+
+ Reporting:
+ (default) look for multiple alignments, report best, with MAPQ
+ OR
+ -k <int> report up to <int> alns per read; MAPQ not meaningful
+ OR
+ -a/--all report all alignments; very slow, MAPQ not meaningful
+
+ Effort:
+ -D <int> give up extending after <int> failed extends in a row (15)
+ -R <int> for reads w/ repetitive seeds, try <int> sets of seeds (2)
+
+ Paired-end:
+ -I/--minins <int> minimum fragment length (0)
+ -X/--maxins <int> maximum fragment length (500)
+ --fr/--rf/--ff -1, -2 mates align fw/rev, rev/fw, fw/fw (--fr)
+ --no-mixed suppress unpaired alignments for paired reads
+ --no-discordant suppress discordant alignments for paired reads
+ --no-dovetail not concordant when mates extend past each other
+ --no-contain not concordant when one mate alignment contains other
+ --no-overlap not concordant when mates overlap at all
+
+ Output:
+ -t/--time print wall-clock time taken by search phases
+ --un <path> write unpaired reads that didn't align to <path>
+ --al <path> write unpaired reads that aligned at least once to <path>
+ --un-conc <path> write pairs that didn't align concordantly to <path>
+ --al-conc <path> write pairs that aligned concordantly at least once to <path>
+ (Note: for --un, --al, --un-conc, or --al-conc, add '-gz' to the option name, e.g.
+ --un-gz <path>, to gzip compress output, or add '-bz2' to bzip2 compress output.)
+ --quiet print nothing to stderr except serious errors
+ --met-file <path> send metrics to file at <path> (off)
+ --met-stderr send metrics to stderr (off)
+ --met <int> report internal counters & metrics every <int> secs (1)
+ --no-head supppress header lines, i.e. lines starting with @
+ --no-sq supppress @SQ header lines
+ --rg-id <text> set read group id, reflected in @RG line and RG:Z: opt field
+ --rg <text> add <text> ("lab:value") to @RG line of SAM header.
+ Note: @RG line only printed when --rg-id is set.
+ --omit-sec-seq put '*' in SEQ and QUAL fields for secondary alignments.
+
+ Performance:
+ -o/--offrate <int> override offrate of index; must be >= index's offrate
+ -p/--threads <int> number of alignment threads to launch (1)
+ --reorder force SAM output order to match order of input reads
+ --mm use memory-mapped I/O for index; many 'bowtie's can share
+
+ Other:
+ --qc-filter filter out reads that are bad according to QSEQ filter
+ --seed <int> seed for random number generator (0)
+ --non-deterministic seed rand. gen. arbitrarily instead of using read attributes
+ --version print version information and quit
+ -h/--help print this usage message
+</pre>
+ </div>
+ </div>
+ </div>
+ </div>
+ </div>
+</div>
+</div>
+</div>
+</p>
+</div>
+
+<!-- Placeholder for the output coming back from the server -->
+<div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div id="main">
+ </div>
+ </div>
+ </div>
+</div>
+
+<!-- Footer ================================================== -->
+
+<footer class="bs-footer" role="contentinfo">
+ <h6 div class="container">
+ <a href="http://bowtie-bio.sourceforge.net/bowtie2/index.shtml" target="_blank">Bowtie 2 Homepage</a>
+ </div>
+ </h6>
+</footer>
+
+
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/plugin.properties
new file mode 100644
index 00000000000..fdd65d79fa0
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/bee/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = data-set-details-view
+data-set-entity-types = FASTQ_GZ
+label = Bowtie2 Alignment
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/index.html
new file mode 100644
index 00000000000..5aa95655632
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/index.html
@@ -0,0 +1,263 @@
+<!DOCTYPE html>
+<html>
+ <head>
+ <title>Flowcell Statistics</title>
+ <script type="text/javascript" src="/openbis/resources/js/d3.v3.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/d3.layout.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-dsu.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-action-deferrer.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/FileSaver.js"></script>
+ <link rel="stylesheet" href="//maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css">
+ <link rel="stylesheet" type="text/css" href="style.css" />
+ </head>
+ <body>
+ <div id="container" class="container">
+ <script>
+
+ var formatThousands = d3.format(",");
+ dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+ var webAppContext = new openbisWebAppContext();
+ dsu.server.useSession(webAppContext.getSessionId());
+
+ var prop;
+ var flowcellProperties = [];
+ var myArray = [];
+ var sumArray = [];
+ var sumArrayNOINDEX = [];
+ var sumsArray = []
+
+ loadData()
+
+ /* ------- General functions -------------------------------------------*/
+
+ // used for sorting by lane of the final array of objects
+ function compare(a,b) {
+ if (a.lane < b.lane)
+ return -1;
+ if (a.lane > b.lane)
+ return 1;
+ return 0;
+ }
+
+ function isNumber(n) {
+ return !isNaN(parseFloat(n)) && isFinite(n);
+ }
+
+ function roundFloat(myFloat) {
+ return Number(myFloat).toFixed(2);
+ }
+
+
+ /* -------------------------------------------------------------------*/
+
+function loadData () {
+ var dataSetProperties;
+ var prop;
+
+ dsu.retrieveSample(webAppContext.getEntityIdentifier(), function(response) {
+
+ flowcellProperties = response.result[0].properties;
+ numberOfLanes = (flowcellProperties.LANECOUNT);
+
+ var sampleCodes = [];
+ for (i = 1; i <= numberOfLanes; i++) {
+ sampleCodes.push(webAppContext.getEntityIdentifier() + ":" + i);
+ }
+
+ var deferrer = new openbisActionDeferrer(function(){
+ sumArray.sort(compare);
+ sumArrayNOINDEX.sort(compare);
+ plotLaneTable (sumArrayNOINDEX, true);
+ placeholder()
+ plotLaneTable (sumArray, false);
+ downloadButton ("tableStats");
+ $("#save_as" + "tableStats").click(function() { submit_download_form("html", "tableStats"); });
+ }, sampleCodes);
+
+ sampleCodes.forEach(function(sampleCode){
+ dsu.retrieveDataSetsForSample(sampleCode, function(response){
+ getProperties(response);
+ //console.log("got response " + sampleCode);
+ var sums = calculateSum(myArray, sampleCode, true);
+ var sumsNOINDEX = calculateSum(myArray, sampleCode, false);
+ sumArray.push(sums[0]);
+ sumArrayNOINDEX.push(sumsNOINDEX[0]);
+ myArray = [];
+ deferrer.dependencyCompleted(sampleCode);
+ });
+ });
+
+ function getProperties(dataSetProperties) {
+ for (var i = 0; i < dataSetProperties.result.length; i++) {
+ myArray.push({
+ 'externalSampleName' : dataSetProperties.result[i].properties.EXTERNAL_SAMPLE_NAME,
+ 'index1': dataSetProperties.result[i].properties.BARCODE,
+ 'index2': dataSetProperties.result[i].properties.INDEX2,
+ 'percFilteringPass' : parseFloat(dataSetProperties.result[i].properties.PERCENTAGE_PASSED_FILTERING),
+ 'rawReadsSum' : dataSetProperties.result[i].properties.RAW_READS_SUM,
+ 'pfReadsSum' : dataSetProperties.result[i].properties.PF_READS_SUM,
+ 'rawYieldMbases' : dataSetProperties.result[i].properties.RAW_YIELD_MBASES,
+ 'yieldMbases' : dataSetProperties.result[i].properties.YIELD_MBASES,
+ 'percRawClustersPerLane': parseFloat(dataSetProperties.result[i].properties.PERCENTAGE_RAW_CLUSTERS_PER_LANE),
+ 'pfMeanQualityScore' : parseFloat(dataSetProperties.result[i].properties.PFMEANQUALITYSCORE),
+ 'pfYieldq30Percentage' : parseFloat(dataSetProperties.result[i].properties.PFYIELDQ30PERCENTAGE)
+ });
+ };
+ };
+ });
+};
+
+function plotLaneTable (sumArray, withNOINDEX) {
+
+ d3.select("body").append("text")
+ .text("Summary Table")
+ .attr("class", "h3");
+
+ d3.select("body").append("text")
+ .text(function (){if (withNOINDEX) {return " with NOINDEX";} return " without NOINDEX";})
+ .attr("class", "h6");
+
+ var laneTableStats = d3.select("body")
+ .append("table")
+ .attr("id", "tableStats")
+ .attr("class", "tableStats")
+ ;
+ header = {"Lane":1, "# of Samples":1, "Average Passed Filtering (PF)":1, "Sum Raw Reads":1, "Sum PF Reads":1, "Sum Raw Bases":1,
+ "Sum PF Bases":1, "Average Raw Clusters in % per Index":1, "Average PF Phred Score":1, "Average > 30 Phred Score":1 }
+
+ // create the table header
+ var thead = laneTableStats.selectAll("th")
+ .data(d3.keys(header))
+ .enter().append("th")
+ .text(function(d){return d})
+ ;
+
+ // create rows
+ var tr = laneTableStats.selectAll("tr")
+ .data(sumArray).enter().append("tr")
+ // cells
+ var td = tr.selectAll("td")
+ .data(function(d){return d3.values(d)})
+ .enter().append("td")
+ .text(function(d) {if (isNumber(d)) {return formatThousands(d)}; return d;})
+ .style("text-align", function(d){if (isNumber(d)) {return "right"} return "left"})
+ ;
+}
+
+function placeholder() {
+
+var space = d3.select("body")
+ .append("svg")
+ .attr("id", "placeholder")
+ .attr("width", 1500)
+ .attr("height", 50)
+ ;
+}
+
+function calculateSum(statisticsArray, sampleCode, withNOINDEX) {
+
+ var sums = []
+ var averagePercFilteringPass = 0;
+ var sumRawReads = 0;
+ var sumPfReads = 0;
+ var sumRawYieldMbases = 0;
+ var sumYieldMbases = 0;
+ var averagePercRawClustersPerLane = 0;
+ var averagePfMeanQualityScore = 0;
+ var averagePfYieldq30Percentage = 0;
+
+ for (var i = 0; i < statisticsArray.length; i++) {
+ // do not calculate with the NOINDEX reads
+ if ((typeof (statisticsArray[i].externalSampleName) == 'undefined') && withNOINDEX) {
+ continue;
+ } else {
+
+ averagePercFilteringPass = averagePercFilteringPass + parseFloat(statisticsArray[i].percFilteringPass);
+ sumRawReads = sumRawReads + parseInt(statisticsArray[i].rawReadsSum);
+ sumPfReads = sumPfReads + parseInt(statisticsArray[i].pfReadsSum);
+ sumRawYieldMbases = sumRawYieldMbases + parseInt(statisticsArray[i].rawYieldMbases);
+ sumYieldMbases = sumYieldMbases + parseInt(statisticsArray[i].yieldMbases);
+ averagePercRawClustersPerLane = averagePercRawClustersPerLane + parseInt(statisticsArray[i].percRawClustersPerLane);
+ averagePfMeanQualityScore = averagePfMeanQualityScore + parseInt(statisticsArray[i].pfMeanQualityScore);
+ averagePfYieldq30Percentage = averagePfYieldq30Percentage + parseInt(statisticsArray[i].pfYieldq30Percentage);
+ }
+ }
+ if (withNOINDEX) {penalty = -1} else {penalty = 0}
+
+ // added the Math.max function to make sure that there is no division by zero,
+ // can happen when a single sample is on a lane (no multiplexing)
+ averagePercFilteringPass = roundFloat(averagePercFilteringPass / Math.max((statisticsArray.length + penalty),1));
+ averagePercRawClustersPerLane = roundFloat(averagePercRawClustersPerLane / Math.max((statisticsArray.length + penalty),1));
+ averagePfMeanQualityScore = roundFloat(averagePfMeanQualityScore / Math.max((statisticsArray.length + penalty),1));
+ averagePfYieldq30Percentage = roundFloat(averagePfYieldq30Percentage / Math.max((statisticsArray.length + penalty),1));
+
+ sums.push({
+ 'lane' : sampleCode.split("/")[2].split(":")[1],
+ 'numberOfSamples' : statisticsArray.length,
+ 'averagePercFilteringPass' : averagePercFilteringPass,
+ 'rawReadsSum' : sumRawReads,
+ 'pfReadsSum' : sumPfReads,
+ 'rawYieldMbases' : sumRawYieldMbases,
+ 'yieldMbases' : sumYieldMbases,
+ 'percRawClustersPerLane': averagePercRawClustersPerLane,
+ 'pfMeanQualityScore' : averagePfMeanQualityScore,
+ 'pfYieldq30Percentage' : averagePfYieldq30Percentage
+ });
+ return sums;
+}
+
+
+ function downloadButton (buttonName) {
+
+ var div = d3.select("body").append("button")
+ .attr("class", "btn btn-default btn-xs")
+ .attr("type", "submit")
+ .attr("id", "save_as" + buttonName)
+ .attr("value", "")
+ .text("Save")
+ ;
+ }
+
+ function submit_download_form(output_format, svgName)
+ {
+ var rawSampleName = webAppContext.entityIdentifier
+ var split = rawSampleName.split(":")
+ var fc = split[0].split("/")[2]
+ var lane = split[1]
+
+ // Get the d3js SVG element
+ var tmp = document.getElementById(svgName);
+
+ if (output_format == "svg") {
+
+ // Extract the data as SVG text string
+ var svg_xml = "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\">" + (new XMLSerializer).serializeToString(tmp) + "</svg>";
+
+ var blob = new Blob([svg_xml], {type: "image/svg+xml;charset=utf-8"});
+ }
+ if (output_format == "html") {
+ var html = "<html> <head> <title></title> <style type=\"text/css\">" +
+ "table.tableStats { font-family: sans-serif; font-size: 14px; border-collapse:collapse; }" +
+ ".tableStats th { padding:6px 10px; color:#444; font-weight:bold; text-shadow:1px 1px 1px #fff; border-bottom:2px solid #444; }" +
+ ".tableStats tr:nth-child(even) { background: WhiteSmoke; }" +
+ ".tableStats td { padding:0px 10px 10px 10px; }" +
+ "</style> </head> <body>" +
+ (new XMLSerializer).serializeToString(tmp) +
+ "</body> </html>"
+ var blob = new Blob([html], {type: "image/html;charset=utf-8"});
+ }
+ if (output_format == "png") {
+ console.log("png")
+ }
+
+ saveAs(blob, fc + "_" + svgName + "." + output_format);
+
+ }
+
+ </script>
+ </div>
+ </body>
+</html>
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/style.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/style.css
new file mode 100644
index 00000000000..985d8ac6db0
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/html/style.css
@@ -0,0 +1,47 @@
+ .axis path,
+ .axis line {
+ fill: none;
+ stroke: #000;
+ shape-rendering: crispEdges;
+ }
+
+ .axis text {
+ font-family: sans-serif;
+ font-size: 10px;
+ }
+
+ table.tableStats {
+ font-family: sans-serif;
+ font-size: 14px;
+ border-collapse:collapse;
+ }
+
+ .tableStats th {
+ padding:6px 10px;
+ color:#444;
+ font-weight:bold;
+ text-shadow:1px 1px 1px #fff;
+ border-bottom:2px solid #444;
+ }
+
+ .tableStats tr:nth-child(even) {
+ background: WhiteSmoke;
+ }
+ .tableStats td {
+
+ padding:0px 10px 10px 10px;
+
+ }
+
+ div.tooltip {
+ position: absolute;
+ text-align: center;
+ width: 100px;
+ height: 42px;
+ padding: 2px;
+ font: 12px sans-serif;
+ background: LightSalmon;
+ border: 0px;
+ border-radius: 8px;
+ pointer-events: none;
+ }
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/plugin.properties
new file mode 100644
index 00000000000..19629033996
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/cellStatistics/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = sample-details-view
+sample-entity-types = ILLUMINA_FLOW_CELL
+label = Flow Cell Statistics
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css
new file mode 100644
index 00000000000..f860bbc069d
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css
@@ -0,0 +1,442 @@
+/*!
+ * Bootstrap v3.2.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+
+.btn-default,
+.btn-primary,
+.btn-success,
+.btn-info,
+.btn-warning,
+.btn-danger {
+ text-shadow: 0 -1px 0 rgba(0, 0, 0, .2);
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 1px rgba(0, 0, 0, .075);
+}
+.btn-default:active,
+.btn-primary:active,
+.btn-success:active,
+.btn-info:active,
+.btn-warning:active,
+.btn-danger:active,
+.btn-default.active,
+.btn-primary.active,
+.btn-success.active,
+.btn-info.active,
+.btn-warning.active,
+.btn-danger.active {
+ -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+ box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+}
+.btn:active,
+.btn.active {
+ background-image: none;
+}
+.btn-default {
+ text-shadow: 0 1px 0 #fff;
+ background-image: -webkit-linear-gradient(top, #fff 0%, #e0e0e0 100%);
+ background-image: -o-linear-gradient(top, #fff 0%, #e0e0e0 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#e0e0e0));
+ background-image: linear-gradient(to bottom, #fff 0%, #e0e0e0 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#ffe0e0e0', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-color: #dbdbdb;
+ border-color: #ccc;
+}
+.btn-default:hover,
+.btn-default:focus {
+ background-color: #e0e0e0;
+ background-position: 0 -15px;
+}
+.btn-default:active,
+.btn-default.active {
+ background-color: #e0e0e0;
+ border-color: #dbdbdb;
+}
+.btn-default:disabled,
+.btn-default[disabled] {
+ background-color: #e0e0e0;
+ background-image: none;
+}
+.btn-primary {
+ background-image: -webkit-linear-gradient(top, #428bca 0%, #2d6ca2 100%);
+ background-image: -o-linear-gradient(top, #428bca 0%, #2d6ca2 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#428bca), to(#2d6ca2));
+ background-image: linear-gradient(to bottom, #428bca 0%, #2d6ca2 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff2d6ca2', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-color: #2b669a;
+}
+.btn-primary:hover,
+.btn-primary:focus {
+ background-color: #2d6ca2;
+ background-position: 0 -15px;
+}
+.btn-primary:active,
+.btn-primary.active {
+ background-color: #2d6ca2;
+ border-color: #2b669a;
+}
+.btn-primary:disabled,
+.btn-primary[disabled] {
+ background-color: #2d6ca2;
+ background-image: none;
+}
+.btn-success {
+ background-image: -webkit-linear-gradient(top, #5cb85c 0%, #419641 100%);
+ background-image: -o-linear-gradient(top, #5cb85c 0%, #419641 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#419641));
+ background-image: linear-gradient(to bottom, #5cb85c 0%, #419641 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff419641', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-color: #3e8f3e;
+}
+.btn-success:hover,
+.btn-success:focus {
+ background-color: #419641;
+ background-position: 0 -15px;
+}
+.btn-success:active,
+.btn-success.active {
+ background-color: #419641;
+ border-color: #3e8f3e;
+}
+.btn-success:disabled,
+.btn-success[disabled] {
+ background-color: #419641;
+ background-image: none;
+}
+.btn-info {
+ background-image: -webkit-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
+ background-image: -o-linear-gradient(top, #5bc0de 0%, #2aabd2 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#5bc0de), to(#2aabd2));
+ background-image: linear-gradient(to bottom, #5bc0de 0%, #2aabd2 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff2aabd2', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-color: #28a4c9;
+}
+.btn-info:hover,
+.btn-info:focus {
+ background-color: #2aabd2;
+ background-position: 0 -15px;
+}
+.btn-info:active,
+.btn-info.active {
+ background-color: #2aabd2;
+ border-color: #28a4c9;
+}
+.btn-info:disabled,
+.btn-info[disabled] {
+ background-color: #2aabd2;
+ background-image: none;
+}
+.btn-warning {
+ background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
+ background-image: -o-linear-gradient(top, #f0ad4e 0%, #eb9316 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#f0ad4e), to(#eb9316));
+ background-image: linear-gradient(to bottom, #f0ad4e 0%, #eb9316 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffeb9316', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-color: #e38d13;
+}
+.btn-warning:hover,
+.btn-warning:focus {
+ background-color: #eb9316;
+ background-position: 0 -15px;
+}
+.btn-warning:active,
+.btn-warning.active {
+ background-color: #eb9316;
+ border-color: #e38d13;
+}
+.btn-warning:disabled,
+.btn-warning[disabled] {
+ background-color: #eb9316;
+ background-image: none;
+}
+.btn-danger {
+ background-image: -webkit-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
+ background-image: -o-linear-gradient(top, #d9534f 0%, #c12e2a 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#d9534f), to(#c12e2a));
+ background-image: linear-gradient(to bottom, #d9534f 0%, #c12e2a 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc12e2a', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-color: #b92c28;
+}
+.btn-danger:hover,
+.btn-danger:focus {
+ background-color: #c12e2a;
+ background-position: 0 -15px;
+}
+.btn-danger:active,
+.btn-danger.active {
+ background-color: #c12e2a;
+ border-color: #b92c28;
+}
+.btn-danger:disabled,
+.btn-danger[disabled] {
+ background-color: #c12e2a;
+ background-image: none;
+}
+.thumbnail,
+.img-thumbnail {
+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+}
+.dropdown-menu > li > a:hover,
+.dropdown-menu > li > a:focus {
+ background-color: #e8e8e8;
+ background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+ background-image: -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#f5f5f5), to(#e8e8e8));
+ background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
+ background-repeat: repeat-x;
+}
+.dropdown-menu > .active > a,
+.dropdown-menu > .active > a:hover,
+.dropdown-menu > .active > a:focus {
+ background-color: #357ebd;
+ background-image: -webkit-linear-gradient(top, #428bca 0%, #357ebd 100%);
+ background-image: -o-linear-gradient(top, #428bca 0%, #357ebd 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#428bca), to(#357ebd));
+ background-image: linear-gradient(to bottom, #428bca 0%, #357ebd 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff357ebd', GradientType=0);
+ background-repeat: repeat-x;
+}
+.navbar-default {
+ background-image: -webkit-linear-gradient(top, #fff 0%, #f8f8f8 100%);
+ background-image: -o-linear-gradient(top, #fff 0%, #f8f8f8 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#fff), to(#f8f8f8));
+ background-image: linear-gradient(to bottom, #fff 0%, #f8f8f8 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffffffff', endColorstr='#fff8f8f8', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, .15), 0 1px 5px rgba(0, 0, 0, .075);
+}
+.navbar-default .navbar-nav > .active > a {
+ background-image: -webkit-linear-gradient(top, #ebebeb 0%, #f3f3f3 100%);
+ background-image: -o-linear-gradient(top, #ebebeb 0%, #f3f3f3 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#ebebeb), to(#f3f3f3));
+ background-image: linear-gradient(to bottom, #ebebeb 0%, #f3f3f3 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffebebeb', endColorstr='#fff3f3f3', GradientType=0);
+ background-repeat: repeat-x;
+ -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 3px 9px rgba(0, 0, 0, .075);
+}
+.navbar-brand,
+.navbar-nav > li > a {
+ text-shadow: 0 1px 0 rgba(255, 255, 255, .25);
+}
+.navbar-inverse {
+ background-image: -webkit-linear-gradient(top, #3c3c3c 0%, #222 100%);
+ background-image: -o-linear-gradient(top, #3c3c3c 0%, #222 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#3c3c3c), to(#222));
+ background-image: linear-gradient(to bottom, #3c3c3c 0%, #222 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff3c3c3c', endColorstr='#ff222222', GradientType=0);
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+ background-repeat: repeat-x;
+}
+.navbar-inverse .navbar-nav > .active > a {
+ background-image: -webkit-linear-gradient(top, #222 0%, #282828 100%);
+ background-image: -o-linear-gradient(top, #222 0%, #282828 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#222), to(#282828));
+ background-image: linear-gradient(to bottom, #222 0%, #282828 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff222222', endColorstr='#ff282828', GradientType=0);
+ background-repeat: repeat-x;
+ -webkit-box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
+ box-shadow: inset 0 3px 9px rgba(0, 0, 0, .25);
+}
+.navbar-inverse .navbar-brand,
+.navbar-inverse .navbar-nav > li > a {
+ text-shadow: 0 -1px 0 rgba(0, 0, 0, .25);
+}
+.navbar-static-top,
+.navbar-fixed-top,
+.navbar-fixed-bottom {
+ border-radius: 0;
+}
+.alert {
+ text-shadow: 0 1px 0 rgba(255, 255, 255, .2);
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, .25), 0 1px 2px rgba(0, 0, 0, .05);
+}
+.alert-success {
+ background-image: -webkit-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
+ background-image: -o-linear-gradient(top, #dff0d8 0%, #c8e5bc 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#dff0d8), to(#c8e5bc));
+ background-image: linear-gradient(to bottom, #dff0d8 0%, #c8e5bc 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffc8e5bc', GradientType=0);
+ background-repeat: repeat-x;
+ border-color: #b2dba1;
+}
+.alert-info {
+ background-image: -webkit-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
+ background-image: -o-linear-gradient(top, #d9edf7 0%, #b9def0 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#d9edf7), to(#b9def0));
+ background-image: linear-gradient(to bottom, #d9edf7 0%, #b9def0 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffb9def0', GradientType=0);
+ background-repeat: repeat-x;
+ border-color: #9acfea;
+}
+.alert-warning {
+ background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
+ background-image: -o-linear-gradient(top, #fcf8e3 0%, #f8efc0 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#fcf8e3), to(#f8efc0));
+ background-image: linear-gradient(to bottom, #fcf8e3 0%, #f8efc0 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fff8efc0', GradientType=0);
+ background-repeat: repeat-x;
+ border-color: #f5e79e;
+}
+.alert-danger {
+ background-image: -webkit-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
+ background-image: -o-linear-gradient(top, #f2dede 0%, #e7c3c3 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#f2dede), to(#e7c3c3));
+ background-image: linear-gradient(to bottom, #f2dede 0%, #e7c3c3 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffe7c3c3', GradientType=0);
+ background-repeat: repeat-x;
+ border-color: #dca7a7;
+}
+.progress {
+ background-image: -webkit-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);
+ background-image: -o-linear-gradient(top, #ebebeb 0%, #f5f5f5 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#ebebeb), to(#f5f5f5));
+ background-image: linear-gradient(to bottom, #ebebeb 0%, #f5f5f5 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffebebeb', endColorstr='#fff5f5f5', GradientType=0);
+ background-repeat: repeat-x;
+}
+.progress-bar {
+ background-image: -webkit-linear-gradient(top, #428bca 0%, #3071a9 100%);
+ background-image: -o-linear-gradient(top, #428bca 0%, #3071a9 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#428bca), to(#3071a9));
+ background-image: linear-gradient(to bottom, #428bca 0%, #3071a9 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff3071a9', GradientType=0);
+ background-repeat: repeat-x;
+}
+.progress-bar-success {
+ background-image: -webkit-linear-gradient(top, #5cb85c 0%, #449d44 100%);
+ background-image: -o-linear-gradient(top, #5cb85c 0%, #449d44 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#5cb85c), to(#449d44));
+ background-image: linear-gradient(to bottom, #5cb85c 0%, #449d44 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5cb85c', endColorstr='#ff449d44', GradientType=0);
+ background-repeat: repeat-x;
+}
+.progress-bar-info {
+ background-image: -webkit-linear-gradient(top, #5bc0de 0%, #31b0d5 100%);
+ background-image: -o-linear-gradient(top, #5bc0de 0%, #31b0d5 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#5bc0de), to(#31b0d5));
+ background-image: linear-gradient(to bottom, #5bc0de 0%, #31b0d5 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff5bc0de', endColorstr='#ff31b0d5', GradientType=0);
+ background-repeat: repeat-x;
+}
+.progress-bar-warning {
+ background-image: -webkit-linear-gradient(top, #f0ad4e 0%, #ec971f 100%);
+ background-image: -o-linear-gradient(top, #f0ad4e 0%, #ec971f 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#f0ad4e), to(#ec971f));
+ background-image: linear-gradient(to bottom, #f0ad4e 0%, #ec971f 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff0ad4e', endColorstr='#ffec971f', GradientType=0);
+ background-repeat: repeat-x;
+}
+.progress-bar-danger {
+ background-image: -webkit-linear-gradient(top, #d9534f 0%, #c9302c 100%);
+ background-image: -o-linear-gradient(top, #d9534f 0%, #c9302c 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#d9534f), to(#c9302c));
+ background-image: linear-gradient(to bottom, #d9534f 0%, #c9302c 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9534f', endColorstr='#ffc9302c', GradientType=0);
+ background-repeat: repeat-x;
+}
+.progress-bar-striped {
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+.list-group {
+ border-radius: 4px;
+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, .075);
+}
+.list-group-item.active,
+.list-group-item.active:hover,
+.list-group-item.active:focus {
+ text-shadow: 0 -1px 0 #3071a9;
+ background-image: -webkit-linear-gradient(top, #428bca 0%, #3278b3 100%);
+ background-image: -o-linear-gradient(top, #428bca 0%, #3278b3 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#428bca), to(#3278b3));
+ background-image: linear-gradient(to bottom, #428bca 0%, #3278b3 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff3278b3', GradientType=0);
+ background-repeat: repeat-x;
+ border-color: #3278b3;
+}
+.panel {
+ -webkit-box-shadow: 0 1px 2px rgba(0, 0, 0, .05);
+ box-shadow: 0 1px 2px rgba(0, 0, 0, .05);
+}
+.panel-default > .panel-heading {
+ background-image: -webkit-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+ background-image: -o-linear-gradient(top, #f5f5f5 0%, #e8e8e8 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#f5f5f5), to(#e8e8e8));
+ background-image: linear-gradient(to bottom, #f5f5f5 0%, #e8e8e8 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff5f5f5', endColorstr='#ffe8e8e8', GradientType=0);
+ background-repeat: repeat-x;
+}
+.panel-primary > .panel-heading {
+ background-image: -webkit-linear-gradient(top, #428bca 0%, #357ebd 100%);
+ background-image: -o-linear-gradient(top, #428bca 0%, #357ebd 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#428bca), to(#357ebd));
+ background-image: linear-gradient(to bottom, #428bca 0%, #357ebd 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ff428bca', endColorstr='#ff357ebd', GradientType=0);
+ background-repeat: repeat-x;
+}
+.panel-success > .panel-heading {
+ background-image: -webkit-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);
+ background-image: -o-linear-gradient(top, #dff0d8 0%, #d0e9c6 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#dff0d8), to(#d0e9c6));
+ background-image: linear-gradient(to bottom, #dff0d8 0%, #d0e9c6 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffdff0d8', endColorstr='#ffd0e9c6', GradientType=0);
+ background-repeat: repeat-x;
+}
+.panel-info > .panel-heading {
+ background-image: -webkit-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);
+ background-image: -o-linear-gradient(top, #d9edf7 0%, #c4e3f3 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#d9edf7), to(#c4e3f3));
+ background-image: linear-gradient(to bottom, #d9edf7 0%, #c4e3f3 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffd9edf7', endColorstr='#ffc4e3f3', GradientType=0);
+ background-repeat: repeat-x;
+}
+.panel-warning > .panel-heading {
+ background-image: -webkit-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);
+ background-image: -o-linear-gradient(top, #fcf8e3 0%, #faf2cc 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#fcf8e3), to(#faf2cc));
+ background-image: linear-gradient(to bottom, #fcf8e3 0%, #faf2cc 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fffcf8e3', endColorstr='#fffaf2cc', GradientType=0);
+ background-repeat: repeat-x;
+}
+.panel-danger > .panel-heading {
+ background-image: -webkit-linear-gradient(top, #f2dede 0%, #ebcccc 100%);
+ background-image: -o-linear-gradient(top, #f2dede 0%, #ebcccc 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#f2dede), to(#ebcccc));
+ background-image: linear-gradient(to bottom, #f2dede 0%, #ebcccc 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#fff2dede', endColorstr='#ffebcccc', GradientType=0);
+ background-repeat: repeat-x;
+}
+.well {
+ background-image: -webkit-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);
+ background-image: -o-linear-gradient(top, #e8e8e8 0%, #f5f5f5 100%);
+ background-image: -webkit-gradient(linear, left top, left bottom, from(#e8e8e8), to(#f5f5f5));
+ background-image: linear-gradient(to bottom, #e8e8e8 0%, #f5f5f5 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#ffe8e8e8', endColorstr='#fff5f5f5', GradientType=0);
+ background-repeat: repeat-x;
+ border-color: #dcdcdc;
+ -webkit-box-shadow: inset 0 1px 3px rgba(0, 0, 0, .05), 0 1px 0 rgba(255, 255, 255, .1);
+ box-shadow: inset 0 1px 3px rgba(0, 0, 0, .05), 0 1px 0 rgba(255, 255, 255, .1);
+}
+/*# sourceMappingURL=bootstrap-theme.css.map */
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css.map b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css.map
new file mode 100644
index 00000000000..4cc41ab001a
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.css.map
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@end-color: darken(@btn-color, 12%));\n .reset-filter(); // Disable gradients for IE9 because filter bleeds through rounded corners\n background-repeat: repeat-x;\n border-color: darken(@btn-color, 14%);\n\n &:hover,\n &:focus {\n background-color: darken(@btn-color, 12%);\n background-position: 0 -15px;\n }\n\n &:active,\n &.active {\n background-color: darken(@btn-color, 12%);\n border-color: darken(@btn-color, 14%);\n }\n\n &:disabled,\n &[disabled] {\n background-color: darken(@btn-color, 12%);\n background-image: none;\n }\n}\n\n// Common styles\n.btn {\n // Remove the gradient for the pressed/active state\n &:active,\n &.active {\n background-image: none;\n }\n}\n\n// Apply the mixin to the buttons\n.btn-default { .btn-styles(@btn-default-bg); text-shadow: 0 1px 0 #fff; border-color: #ccc; }\n.btn-primary { .btn-styles(@btn-primary-bg); }\n.btn-success { .btn-styles(@btn-success-bg); }\n.btn-info { .btn-styles(@btn-info-bg); }\n.btn-warning { .btn-styles(@btn-warning-bg); }\n.btn-danger { .btn-styles(@btn-danger-bg); }\n\n\n\n//\n// Images\n// --------------------------------------------------\n\n.thumbnail,\n.img-thumbnail {\n .box-shadow(0 1px 2px rgba(0,0,0,.075));\n}\n\n\n\n//\n// Dropdowns\n// --------------------------------------------------\n\n.dropdown-menu > li > a:hover,\n.dropdown-menu > li > a:focus {\n #gradient > .vertical(@start-color: @dropdown-link-hover-bg; @end-color: darken(@dropdown-link-hover-bg, 5%));\n background-color: darken(@dropdown-link-hover-bg, 5%);\n}\n.dropdown-menu > .active > a,\n.dropdown-menu > .active > a:hover,\n.dropdown-menu > .active > a:focus {\n #gradient > .vertical(@start-color: @dropdown-link-active-bg; @end-color: darken(@dropdown-link-active-bg, 5%));\n background-color: darken(@dropdown-link-active-bg, 5%);\n}\n\n\n\n//\n// Navbar\n// --------------------------------------------------\n\n// Default navbar\n.navbar-default {\n #gradient > .vertical(@start-color: lighten(@navbar-default-bg, 10%); @end-color: @navbar-default-bg);\n .reset-filter(); // Remove gradient in IE<10 to fix bug where dropdowns don't get triggered\n border-radius: @navbar-border-radius;\n @shadow: inset 0 1px 0 rgba(255,255,255,.15), 0 1px 5px rgba(0,0,0,.075);\n .box-shadow(@shadow);\n\n .navbar-nav > .active > a {\n #gradient > .vertical(@start-color: darken(@navbar-default-bg, 5%); @end-color: darken(@navbar-default-bg, 2%));\n .box-shadow(inset 0 3px 9px rgba(0,0,0,.075));\n }\n}\n.navbar-brand,\n.navbar-nav > li > a {\n text-shadow: 0 1px 0 rgba(255,255,255,.25);\n}\n\n// Inverted navbar\n.navbar-inverse {\n #gradient > .vertical(@start-color: lighten(@navbar-inverse-bg, 10%); @end-color: @navbar-inverse-bg);\n .reset-filter(); // Remove gradient in IE<10 to fix bug where dropdowns don't get triggered\n\n .navbar-nav > .active > a {\n #gradient > .vertical(@start-color: @navbar-inverse-bg; @end-color: lighten(@navbar-inverse-bg, 2.5%));\n .box-shadow(inset 0 3px 9px rgba(0,0,0,.25));\n }\n\n .navbar-brand,\n .navbar-nav > li > a {\n text-shadow: 0 -1px 0 rgba(0,0,0,.25);\n }\n}\n\n// Undo rounded corners in static and fixed navbars\n.navbar-static-top,\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n border-radius: 0;\n}\n\n\n\n//\n// Alerts\n// --------------------------------------------------\n\n// Common styles\n.alert {\n text-shadow: 0 1px 0 rgba(255,255,255,.2);\n @shadow: inset 0 1px 0 rgba(255,255,255,.25), 0 1px 2px rgba(0,0,0,.05);\n .box-shadow(@shadow);\n}\n\n// Mixin for generating new styles\n.alert-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 7.5%));\n border-color: darken(@color, 15%);\n}\n\n// Apply the mixin to the alerts\n.alert-success { .alert-styles(@alert-success-bg); }\n.alert-info { .alert-styles(@alert-info-bg); }\n.alert-warning { .alert-styles(@alert-warning-bg); }\n.alert-danger { .alert-styles(@alert-danger-bg); }\n\n\n\n//\n// Progress bars\n// --------------------------------------------------\n\n// Give the progress background some depth\n.progress {\n #gradient > .vertical(@start-color: darken(@progress-bg, 4%); @end-color: @progress-bg)\n}\n\n// Mixin for generating new styles\n.progress-bar-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 10%));\n}\n\n// Apply the mixin to the progress bars\n.progress-bar { .progress-bar-styles(@progress-bar-bg); }\n.progress-bar-success { .progress-bar-styles(@progress-bar-success-bg); }\n.progress-bar-info { .progress-bar-styles(@progress-bar-info-bg); }\n.progress-bar-warning { .progress-bar-styles(@progress-bar-warning-bg); }\n.progress-bar-danger { .progress-bar-styles(@progress-bar-danger-bg); }\n\n// Reset the striped class because our mixins don't do multiple gradients and\n// the above custom styles override the new `.progress-bar-striped` in v3.2.0.\n.progress-bar-striped {\n #gradient > .striped();\n}\n\n\n//\n// List groups\n// --------------------------------------------------\n\n.list-group {\n border-radius: @border-radius-base;\n .box-shadow(0 1px 2px rgba(0,0,0,.075));\n}\n.list-group-item.active,\n.list-group-item.active:hover,\n.list-group-item.active:focus {\n text-shadow: 0 -1px 0 darken(@list-group-active-bg, 10%);\n #gradient > .vertical(@start-color: @list-group-active-bg; @end-color: darken(@list-group-active-bg, 7.5%));\n border-color: darken(@list-group-active-border, 7.5%);\n}\n\n\n\n//\n// Panels\n// --------------------------------------------------\n\n// Common styles\n.panel {\n .box-shadow(0 1px 2px rgba(0,0,0,.05));\n}\n\n// Mixin for generating new styles\n.panel-heading-styles(@color) {\n #gradient > .vertical(@start-color: @color; @end-color: darken(@color, 5%));\n}\n\n// Apply the mixin to the panel headings only\n.panel-default > .panel-heading { .panel-heading-styles(@panel-default-heading-bg); }\n.panel-primary > .panel-heading { .panel-heading-styles(@panel-primary-heading-bg); }\n.panel-success > .panel-heading { .panel-heading-styles(@panel-success-heading-bg); }\n.panel-info > .panel-heading { .panel-heading-styles(@panel-info-heading-bg); }\n.panel-warning > .panel-heading { .panel-heading-styles(@panel-warning-heading-bg); }\n.panel-danger > .panel-heading { .panel-heading-styles(@panel-danger-heading-bg); }\n\n\n\n//\n// Wells\n// --------------------------------------------------\n\n.well {\n #gradient > .vertical(@start-color: darken(@well-bg, 5%); @end-color: @well-bg);\n border-color: darken(@well-bg, 10%);\n @shadow: inset 0 1px 3px rgba(0,0,0,.05), 0 1px 0 rgba(255,255,255,.1);\n .box-shadow(@shadow);\n}\n","// Vendor Prefixes\n//\n// All vendor mixins are deprecated as of v3.2.0 due to the introduction of\n// Autoprefixer in our Gruntfile. They will be removed in v4.\n\n// - Animations\n// - Backface visibility\n// - Box shadow\n// - Box sizing\n// - Content columns\n// - Hyphens\n// - Placeholder text\n// - Transformations\n// - Transitions\n// - User Select\n\n\n// Animations\n.animation(@animation) {\n -webkit-animation: @animation;\n -o-animation: @animation;\n animation: @animation;\n}\n.animation-name(@name) {\n -webkit-animation-name: @name;\n animation-name: @name;\n}\n.animation-duration(@duration) {\n -webkit-animation-duration: @duration;\n animation-duration: @duration;\n}\n.animation-timing-function(@timing-function) {\n -webkit-animation-timing-function: @timing-function;\n animation-timing-function: @timing-function;\n}\n.animation-delay(@delay) {\n -webkit-animation-delay: @delay;\n animation-delay: @delay;\n}\n.animation-iteration-count(@iteration-count) {\n -webkit-animation-iteration-count: @iteration-count;\n animation-iteration-count: @iteration-count;\n}\n.animation-direction(@direction) {\n -webkit-animation-direction: @direction;\n animation-direction: @direction;\n}\n.animation-fill-mode(@fill-mode) {\n -webkit-animation-fill-mode: @fill-mode;\n animation-fill-mode: @fill-mode;\n}\n\n// Backface visibility\n// Prevent browsers from flickering when using CSS 3D transforms.\n// Default value is `visible`, but can be changed to `hidden`\n\n.backface-visibility(@visibility){\n -webkit-backface-visibility: @visibility;\n -moz-backface-visibility: @visibility;\n backface-visibility: @visibility;\n}\n\n// Drop shadows\n//\n// Note: Deprecated `.box-shadow()` as of v3.1.0 since all of Bootstrap's\n// supported browsers that have box shadow capabilities now support it.\n\n.box-shadow(@shadow) {\n -webkit-box-shadow: @shadow; // iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n &::-moz-placeholder { color: @color; // Firefox\n opacity: 1; } // See https://github.com/twbs/bootstrap/pull/11526\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n",null,"// Gradients\n\n#gradient {\n\n // Horizontal gradient, from left to right\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .horizontal(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to right, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n // Vertical gradient, from top to bottom\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .vertical(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to bottom, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n .directional(@start-color: #555; @end-color: #333; @deg: 45deg) {\n background-repeat: repeat-x;\n background-image: -webkit-linear-gradient(@deg, @start-color, @end-color); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(@deg, @start-color, @end-color); // Opera 12\n background-image: linear-gradient(@deg, @start-color, @end-color); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n }\n .horizontal-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(to right, @start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .vertical-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .radial(@inner-color: #555; @outer-color: #333) {\n background-image: -webkit-radial-gradient(circle, @inner-color, @outer-color);\n background-image: radial-gradient(circle, @inner-color, @outer-color);\n background-repeat: no-repeat;\n }\n .striped(@color: rgba(255,255,255,.15); @angle: 45deg) {\n background-image: -webkit-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n }\n}\n","// Reset filters for IE\n//\n// When you need to remove a gradient background, do not forget to use this to reset\n// the IE filter for IE9 and below.\n\n.reset-filter() {\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(enabled = false)\"));\n}\n"]}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.min.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.min.css
new file mode 100644
index 00000000000..2e97597c876
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap-theme.min.css
@@ -0,0 +1,5 @@
+/*!
+ * Bootstrap v3.2.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css
new file mode 100644
index 00000000000..037dd056151
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css
@@ -0,0 +1,6203 @@
+/*!
+ * Bootstrap v3.2.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+
+/*! normalize.css v3.0.1 | MIT License | git.io/normalize */
+html {
+ font-family: sans-serif;
+ -webkit-text-size-adjust: 100%;
+ -ms-text-size-adjust: 100%;
+}
+body {
+ margin: 0;
+}
+article,
+aside,
+details,
+figcaption,
+figure,
+footer,
+header,
+hgroup,
+main,
+nav,
+section,
+summary {
+ display: block;
+}
+audio,
+canvas,
+progress,
+video {
+ display: inline-block;
+ vertical-align: baseline;
+}
+audio:not([controls]) {
+ display: none;
+ height: 0;
+}
+[hidden],
+template {
+ display: none;
+}
+a {
+ background: transparent;
+}
+a:active,
+a:hover {
+ outline: 0;
+}
+abbr[title] {
+ border-bottom: 1px dotted;
+}
+b,
+strong {
+ font-weight: bold;
+}
+dfn {
+ font-style: italic;
+}
+h1 {
+ margin: .67em 0;
+ font-size: 2em;
+}
+mark {
+ color: #000;
+ background: #ff0;
+}
+small {
+ font-size: 80%;
+}
+sub,
+sup {
+ position: relative;
+ font-size: 75%;
+ line-height: 0;
+ vertical-align: baseline;
+}
+sup {
+ top: -.5em;
+}
+sub {
+ bottom: -.25em;
+}
+img {
+ border: 0;
+}
+svg:not(:root) {
+ overflow: hidden;
+}
+figure {
+ margin: 1em 40px;
+}
+hr {
+ height: 0;
+ -webkit-box-sizing: content-box;
+ -moz-box-sizing: content-box;
+ box-sizing: content-box;
+}
+pre {
+ overflow: auto;
+}
+code,
+kbd,
+pre,
+samp {
+ font-family: monospace, monospace;
+ font-size: 1em;
+}
+button,
+input,
+optgroup,
+select,
+textarea {
+ margin: 0;
+ font: inherit;
+ color: inherit;
+}
+button {
+ overflow: visible;
+}
+button,
+select {
+ text-transform: none;
+}
+button,
+html input[type="button"],
+input[type="reset"],
+input[type="submit"] {
+ -webkit-appearance: button;
+ cursor: pointer;
+}
+button[disabled],
+html input[disabled] {
+ cursor: default;
+}
+button::-moz-focus-inner,
+input::-moz-focus-inner {
+ padding: 0;
+ border: 0;
+}
+input {
+ line-height: normal;
+}
+input[type="checkbox"],
+input[type="radio"] {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+ padding: 0;
+}
+input[type="number"]::-webkit-inner-spin-button,
+input[type="number"]::-webkit-outer-spin-button {
+ height: auto;
+}
+input[type="search"] {
+ -webkit-box-sizing: content-box;
+ -moz-box-sizing: content-box;
+ box-sizing: content-box;
+ -webkit-appearance: textfield;
+}
+input[type="search"]::-webkit-search-cancel-button,
+input[type="search"]::-webkit-search-decoration {
+ -webkit-appearance: none;
+}
+fieldset {
+ padding: .35em .625em .75em;
+ margin: 0 2px;
+ border: 1px solid #c0c0c0;
+}
+legend {
+ padding: 0;
+ border: 0;
+}
+textarea {
+ overflow: auto;
+}
+optgroup {
+ font-weight: bold;
+}
+table {
+ border-spacing: 0;
+ border-collapse: collapse;
+}
+td,
+th {
+ padding: 0;
+}
+@media print {
+ * {
+ color: #000 !important;
+ text-shadow: none !important;
+ background: transparent !important;
+ -webkit-box-shadow: none !important;
+ box-shadow: none !important;
+ }
+ a,
+ a:visited {
+ text-decoration: underline;
+ }
+ a[href]:after {
+ content: " (" attr(href) ")";
+ }
+ abbr[title]:after {
+ content: " (" attr(title) ")";
+ }
+ a[href^="javascript:"]:after,
+ a[href^="#"]:after {
+ content: "";
+ }
+ pre,
+ blockquote {
+ border: 1px solid #999;
+
+ page-break-inside: avoid;
+ }
+ thead {
+ display: table-header-group;
+ }
+ tr,
+ img {
+ page-break-inside: avoid;
+ }
+ img {
+ max-width: 100% !important;
+ }
+ p,
+ h2,
+ h3 {
+ orphans: 3;
+ widows: 3;
+ }
+ h2,
+ h3 {
+ page-break-after: avoid;
+ }
+ select {
+ background: #fff !important;
+ }
+ .navbar {
+ display: none;
+ }
+ .table td,
+ .table th {
+ background-color: #fff !important;
+ }
+ .btn > .caret,
+ .dropup > .btn > .caret {
+ border-top-color: #000 !important;
+ }
+ .label {
+ border: 1px solid #000;
+ }
+ .table {
+ border-collapse: collapse !important;
+ }
+ .table-bordered th,
+ .table-bordered td {
+ border: 1px solid #ddd !important;
+ }
+}
+@font-face {
+ font-family: 'Glyphicons Halflings';
+
+ src: url('../fonts/glyphicons-halflings-regular.eot');
+ src: url('../fonts/glyphicons-halflings-regular.eot?#iefix') format('embedded-opentype'), url('../fonts/glyphicons-halflings-regular.woff') format('woff'), url('../fonts/glyphicons-halflings-regular.ttf') format('truetype'), url('../fonts/glyphicons-halflings-regular.svg#glyphicons_halflingsregular') format('svg');
+}
+.glyphicon {
+ position: relative;
+ top: 1px;
+ display: inline-block;
+ font-family: 'Glyphicons Halflings';
+ font-style: normal;
+ font-weight: normal;
+ line-height: 1;
+
+ -webkit-font-smoothing: antialiased;
+ -moz-osx-font-smoothing: grayscale;
+}
+.glyphicon-asterisk:before {
+ content: "\2a";
+}
+.glyphicon-plus:before {
+ content: "\2b";
+}
+.glyphicon-euro:before {
+ content: "\20ac";
+}
+.glyphicon-minus:before {
+ content: "\2212";
+}
+.glyphicon-cloud:before {
+ content: "\2601";
+}
+.glyphicon-envelope:before {
+ content: "\2709";
+}
+.glyphicon-pencil:before {
+ content: "\270f";
+}
+.glyphicon-glass:before {
+ content: "\e001";
+}
+.glyphicon-music:before {
+ content: "\e002";
+}
+.glyphicon-search:before {
+ content: "\e003";
+}
+.glyphicon-heart:before {
+ content: "\e005";
+}
+.glyphicon-star:before {
+ content: "\e006";
+}
+.glyphicon-star-empty:before {
+ content: "\e007";
+}
+.glyphicon-user:before {
+ content: "\e008";
+}
+.glyphicon-film:before {
+ content: "\e009";
+}
+.glyphicon-th-large:before {
+ content: "\e010";
+}
+.glyphicon-th:before {
+ content: "\e011";
+}
+.glyphicon-th-list:before {
+ content: "\e012";
+}
+.glyphicon-ok:before {
+ content: "\e013";
+}
+.glyphicon-remove:before {
+ content: "\e014";
+}
+.glyphicon-zoom-in:before {
+ content: "\e015";
+}
+.glyphicon-zoom-out:before {
+ content: "\e016";
+}
+.glyphicon-off:before {
+ content: "\e017";
+}
+.glyphicon-signal:before {
+ content: "\e018";
+}
+.glyphicon-cog:before {
+ content: "\e019";
+}
+.glyphicon-trash:before {
+ content: "\e020";
+}
+.glyphicon-home:before {
+ content: "\e021";
+}
+.glyphicon-file:before {
+ content: "\e022";
+}
+.glyphicon-time:before {
+ content: "\e023";
+}
+.glyphicon-road:before {
+ content: "\e024";
+}
+.glyphicon-download-alt:before {
+ content: "\e025";
+}
+.glyphicon-download:before {
+ content: "\e026";
+}
+.glyphicon-upload:before {
+ content: "\e027";
+}
+.glyphicon-inbox:before {
+ content: "\e028";
+}
+.glyphicon-play-circle:before {
+ content: "\e029";
+}
+.glyphicon-repeat:before {
+ content: "\e030";
+}
+.glyphicon-refresh:before {
+ content: "\e031";
+}
+.glyphicon-list-alt:before {
+ content: "\e032";
+}
+.glyphicon-lock:before {
+ content: "\e033";
+}
+.glyphicon-flag:before {
+ content: "\e034";
+}
+.glyphicon-headphones:before {
+ content: "\e035";
+}
+.glyphicon-volume-off:before {
+ content: "\e036";
+}
+.glyphicon-volume-down:before {
+ content: "\e037";
+}
+.glyphicon-volume-up:before {
+ content: "\e038";
+}
+.glyphicon-qrcode:before {
+ content: "\e039";
+}
+.glyphicon-barcode:before {
+ content: "\e040";
+}
+.glyphicon-tag:before {
+ content: "\e041";
+}
+.glyphicon-tags:before {
+ content: "\e042";
+}
+.glyphicon-book:before {
+ content: "\e043";
+}
+.glyphicon-bookmark:before {
+ content: "\e044";
+}
+.glyphicon-print:before {
+ content: "\e045";
+}
+.glyphicon-camera:before {
+ content: "\e046";
+}
+.glyphicon-font:before {
+ content: "\e047";
+}
+.glyphicon-bold:before {
+ content: "\e048";
+}
+.glyphicon-italic:before {
+ content: "\e049";
+}
+.glyphicon-text-height:before {
+ content: "\e050";
+}
+.glyphicon-text-width:before {
+ content: "\e051";
+}
+.glyphicon-align-left:before {
+ content: "\e052";
+}
+.glyphicon-align-center:before {
+ content: "\e053";
+}
+.glyphicon-align-right:before {
+ content: "\e054";
+}
+.glyphicon-align-justify:before {
+ content: "\e055";
+}
+.glyphicon-list:before {
+ content: "\e056";
+}
+.glyphicon-indent-left:before {
+ content: "\e057";
+}
+.glyphicon-indent-right:before {
+ content: "\e058";
+}
+.glyphicon-facetime-video:before {
+ content: "\e059";
+}
+.glyphicon-picture:before {
+ content: "\e060";
+}
+.glyphicon-map-marker:before {
+ content: "\e062";
+}
+.glyphicon-adjust:before {
+ content: "\e063";
+}
+.glyphicon-tint:before {
+ content: "\e064";
+}
+.glyphicon-edit:before {
+ content: "\e065";
+}
+.glyphicon-share:before {
+ content: "\e066";
+}
+.glyphicon-check:before {
+ content: "\e067";
+}
+.glyphicon-move:before {
+ content: "\e068";
+}
+.glyphicon-step-backward:before {
+ content: "\e069";
+}
+.glyphicon-fast-backward:before {
+ content: "\e070";
+}
+.glyphicon-backward:before {
+ content: "\e071";
+}
+.glyphicon-play:before {
+ content: "\e072";
+}
+.glyphicon-pause:before {
+ content: "\e073";
+}
+.glyphicon-stop:before {
+ content: "\e074";
+}
+.glyphicon-forward:before {
+ content: "\e075";
+}
+.glyphicon-fast-forward:before {
+ content: "\e076";
+}
+.glyphicon-step-forward:before {
+ content: "\e077";
+}
+.glyphicon-eject:before {
+ content: "\e078";
+}
+.glyphicon-chevron-left:before {
+ content: "\e079";
+}
+.glyphicon-chevron-right:before {
+ content: "\e080";
+}
+.glyphicon-plus-sign:before {
+ content: "\e081";
+}
+.glyphicon-minus-sign:before {
+ content: "\e082";
+}
+.glyphicon-remove-sign:before {
+ content: "\e083";
+}
+.glyphicon-ok-sign:before {
+ content: "\e084";
+}
+.glyphicon-question-sign:before {
+ content: "\e085";
+}
+.glyphicon-info-sign:before {
+ content: "\e086";
+}
+.glyphicon-screenshot:before {
+ content: "\e087";
+}
+.glyphicon-remove-circle:before {
+ content: "\e088";
+}
+.glyphicon-ok-circle:before {
+ content: "\e089";
+}
+.glyphicon-ban-circle:before {
+ content: "\e090";
+}
+.glyphicon-arrow-left:before {
+ content: "\e091";
+}
+.glyphicon-arrow-right:before {
+ content: "\e092";
+}
+.glyphicon-arrow-up:before {
+ content: "\e093";
+}
+.glyphicon-arrow-down:before {
+ content: "\e094";
+}
+.glyphicon-share-alt:before {
+ content: "\e095";
+}
+.glyphicon-resize-full:before {
+ content: "\e096";
+}
+.glyphicon-resize-small:before {
+ content: "\e097";
+}
+.glyphicon-exclamation-sign:before {
+ content: "\e101";
+}
+.glyphicon-gift:before {
+ content: "\e102";
+}
+.glyphicon-leaf:before {
+ content: "\e103";
+}
+.glyphicon-fire:before {
+ content: "\e104";
+}
+.glyphicon-eye-open:before {
+ content: "\e105";
+}
+.glyphicon-eye-close:before {
+ content: "\e106";
+}
+.glyphicon-warning-sign:before {
+ content: "\e107";
+}
+.glyphicon-plane:before {
+ content: "\e108";
+}
+.glyphicon-calendar:before {
+ content: "\e109";
+}
+.glyphicon-random:before {
+ content: "\e110";
+}
+.glyphicon-comment:before {
+ content: "\e111";
+}
+.glyphicon-magnet:before {
+ content: "\e112";
+}
+.glyphicon-chevron-up:before {
+ content: "\e113";
+}
+.glyphicon-chevron-down:before {
+ content: "\e114";
+}
+.glyphicon-retweet:before {
+ content: "\e115";
+}
+.glyphicon-shopping-cart:before {
+ content: "\e116";
+}
+.glyphicon-folder-close:before {
+ content: "\e117";
+}
+.glyphicon-folder-open:before {
+ content: "\e118";
+}
+.glyphicon-resize-vertical:before {
+ content: "\e119";
+}
+.glyphicon-resize-horizontal:before {
+ content: "\e120";
+}
+.glyphicon-hdd:before {
+ content: "\e121";
+}
+.glyphicon-bullhorn:before {
+ content: "\e122";
+}
+.glyphicon-bell:before {
+ content: "\e123";
+}
+.glyphicon-certificate:before {
+ content: "\e124";
+}
+.glyphicon-thumbs-up:before {
+ content: "\e125";
+}
+.glyphicon-thumbs-down:before {
+ content: "\e126";
+}
+.glyphicon-hand-right:before {
+ content: "\e127";
+}
+.glyphicon-hand-left:before {
+ content: "\e128";
+}
+.glyphicon-hand-up:before {
+ content: "\e129";
+}
+.glyphicon-hand-down:before {
+ content: "\e130";
+}
+.glyphicon-circle-arrow-right:before {
+ content: "\e131";
+}
+.glyphicon-circle-arrow-left:before {
+ content: "\e132";
+}
+.glyphicon-circle-arrow-up:before {
+ content: "\e133";
+}
+.glyphicon-circle-arrow-down:before {
+ content: "\e134";
+}
+.glyphicon-globe:before {
+ content: "\e135";
+}
+.glyphicon-wrench:before {
+ content: "\e136";
+}
+.glyphicon-tasks:before {
+ content: "\e137";
+}
+.glyphicon-filter:before {
+ content: "\e138";
+}
+.glyphicon-briefcase:before {
+ content: "\e139";
+}
+.glyphicon-fullscreen:before {
+ content: "\e140";
+}
+.glyphicon-dashboard:before {
+ content: "\e141";
+}
+.glyphicon-paperclip:before {
+ content: "\e142";
+}
+.glyphicon-heart-empty:before {
+ content: "\e143";
+}
+.glyphicon-link:before {
+ content: "\e144";
+}
+.glyphicon-phone:before {
+ content: "\e145";
+}
+.glyphicon-pushpin:before {
+ content: "\e146";
+}
+.glyphicon-usd:before {
+ content: "\e148";
+}
+.glyphicon-gbp:before {
+ content: "\e149";
+}
+.glyphicon-sort:before {
+ content: "\e150";
+}
+.glyphicon-sort-by-alphabet:before {
+ content: "\e151";
+}
+.glyphicon-sort-by-alphabet-alt:before {
+ content: "\e152";
+}
+.glyphicon-sort-by-order:before {
+ content: "\e153";
+}
+.glyphicon-sort-by-order-alt:before {
+ content: "\e154";
+}
+.glyphicon-sort-by-attributes:before {
+ content: "\e155";
+}
+.glyphicon-sort-by-attributes-alt:before {
+ content: "\e156";
+}
+.glyphicon-unchecked:before {
+ content: "\e157";
+}
+.glyphicon-expand:before {
+ content: "\e158";
+}
+.glyphicon-collapse-down:before {
+ content: "\e159";
+}
+.glyphicon-collapse-up:before {
+ content: "\e160";
+}
+.glyphicon-log-in:before {
+ content: "\e161";
+}
+.glyphicon-flash:before {
+ content: "\e162";
+}
+.glyphicon-log-out:before {
+ content: "\e163";
+}
+.glyphicon-new-window:before {
+ content: "\e164";
+}
+.glyphicon-record:before {
+ content: "\e165";
+}
+.glyphicon-save:before {
+ content: "\e166";
+}
+.glyphicon-open:before {
+ content: "\e167";
+}
+.glyphicon-saved:before {
+ content: "\e168";
+}
+.glyphicon-import:before {
+ content: "\e169";
+}
+.glyphicon-export:before {
+ content: "\e170";
+}
+.glyphicon-send:before {
+ content: "\e171";
+}
+.glyphicon-floppy-disk:before {
+ content: "\e172";
+}
+.glyphicon-floppy-saved:before {
+ content: "\e173";
+}
+.glyphicon-floppy-remove:before {
+ content: "\e174";
+}
+.glyphicon-floppy-save:before {
+ content: "\e175";
+}
+.glyphicon-floppy-open:before {
+ content: "\e176";
+}
+.glyphicon-credit-card:before {
+ content: "\e177";
+}
+.glyphicon-transfer:before {
+ content: "\e178";
+}
+.glyphicon-cutlery:before {
+ content: "\e179";
+}
+.glyphicon-header:before {
+ content: "\e180";
+}
+.glyphicon-compressed:before {
+ content: "\e181";
+}
+.glyphicon-earphone:before {
+ content: "\e182";
+}
+.glyphicon-phone-alt:before {
+ content: "\e183";
+}
+.glyphicon-tower:before {
+ content: "\e184";
+}
+.glyphicon-stats:before {
+ content: "\e185";
+}
+.glyphicon-sd-video:before {
+ content: "\e186";
+}
+.glyphicon-hd-video:before {
+ content: "\e187";
+}
+.glyphicon-subtitles:before {
+ content: "\e188";
+}
+.glyphicon-sound-stereo:before {
+ content: "\e189";
+}
+.glyphicon-sound-dolby:before {
+ content: "\e190";
+}
+.glyphicon-sound-5-1:before {
+ content: "\e191";
+}
+.glyphicon-sound-6-1:before {
+ content: "\e192";
+}
+.glyphicon-sound-7-1:before {
+ content: "\e193";
+}
+.glyphicon-copyright-mark:before {
+ content: "\e194";
+}
+.glyphicon-registration-mark:before {
+ content: "\e195";
+}
+.glyphicon-cloud-download:before {
+ content: "\e197";
+}
+.glyphicon-cloud-upload:before {
+ content: "\e198";
+}
+.glyphicon-tree-conifer:before {
+ content: "\e199";
+}
+.glyphicon-tree-deciduous:before {
+ content: "\e200";
+}
+* {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+}
+*:before,
+*:after {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+}
+html {
+ font-size: 10px;
+
+ -webkit-tap-highlight-color: rgba(0, 0, 0, 0);
+}
+body {
+ font-family: "Helvetica Neue", Helvetica, Arial, sans-serif;
+ font-size: 14px;
+ line-height: 1.42857143;
+ color: #333;
+ background-color: #fff;
+}
+input,
+button,
+select,
+textarea {
+ font-family: inherit;
+ font-size: inherit;
+ line-height: inherit;
+}
+a {
+ color: #428bca;
+ text-decoration: none;
+}
+a:hover,
+a:focus {
+ color: #2a6496;
+ text-decoration: underline;
+}
+a:focus {
+ outline: thin dotted;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px;
+}
+figure {
+ margin: 0;
+}
+img {
+ vertical-align: middle;
+}
+.img-responsive,
+.thumbnail > img,
+.thumbnail a > img,
+.carousel-inner > .item > img,
+.carousel-inner > .item > a > img {
+ display: block;
+ width: 100% \9;
+ max-width: 100%;
+ height: auto;
+}
+.img-rounded {
+ border-radius: 6px;
+}
+.img-thumbnail {
+ display: inline-block;
+ width: 100% \9;
+ max-width: 100%;
+ height: auto;
+ padding: 4px;
+ line-height: 1.42857143;
+ background-color: #fff;
+ border: 1px solid #ddd;
+ border-radius: 4px;
+ -webkit-transition: all .2s ease-in-out;
+ -o-transition: all .2s ease-in-out;
+ transition: all .2s ease-in-out;
+}
+.img-circle {
+ border-radius: 50%;
+}
+hr {
+ margin-top: 20px;
+ margin-bottom: 20px;
+ border: 0;
+ border-top: 1px solid #eee;
+}
+.sr-only {
+ position: absolute;
+ width: 1px;
+ height: 1px;
+ padding: 0;
+ margin: -1px;
+ overflow: hidden;
+ clip: rect(0, 0, 0, 0);
+ border: 0;
+}
+.sr-only-focusable:active,
+.sr-only-focusable:focus {
+ position: static;
+ width: auto;
+ height: auto;
+ margin: 0;
+ overflow: visible;
+ clip: auto;
+}
+h1,
+h2,
+h3,
+h4,
+h5,
+h6,
+.h1,
+.h2,
+.h3,
+.h4,
+.h5,
+.h6 {
+ font-family: inherit;
+ font-weight: 500;
+ line-height: 1.1;
+ color: inherit;
+}
+h1 small,
+h2 small,
+h3 small,
+h4 small,
+h5 small,
+h6 small,
+.h1 small,
+.h2 small,
+.h3 small,
+.h4 small,
+.h5 small,
+.h6 small,
+h1 .small,
+h2 .small,
+h3 .small,
+h4 .small,
+h5 .small,
+h6 .small,
+.h1 .small,
+.h2 .small,
+.h3 .small,
+.h4 .small,
+.h5 .small,
+.h6 .small {
+ font-weight: normal;
+ line-height: 1;
+ color: #777;
+}
+h1,
+.h1,
+h2,
+.h2,
+h3,
+.h3 {
+ margin-top: 20px;
+ margin-bottom: 10px;
+}
+h1 small,
+.h1 small,
+h2 small,
+.h2 small,
+h3 small,
+.h3 small,
+h1 .small,
+.h1 .small,
+h2 .small,
+.h2 .small,
+h3 .small,
+.h3 .small {
+ font-size: 65%;
+}
+h4,
+.h4,
+h5,
+.h5,
+h6,
+.h6 {
+ margin-top: 10px;
+ margin-bottom: 10px;
+}
+h4 small,
+.h4 small,
+h5 small,
+.h5 small,
+h6 small,
+.h6 small,
+h4 .small,
+.h4 .small,
+h5 .small,
+.h5 .small,
+h6 .small,
+.h6 .small {
+ font-size: 75%;
+}
+h1,
+.h1 {
+ font-size: 36px;
+}
+h2,
+.h2 {
+ font-size: 30px;
+}
+h3,
+.h3 {
+ font-size: 24px;
+}
+h4,
+.h4 {
+ font-size: 18px;
+}
+h5,
+.h5 {
+ font-size: 14px;
+}
+h6,
+.h6 {
+ font-size: 12px;
+}
+p {
+ margin: 0 0 10px;
+}
+.lead {
+ margin-bottom: 20px;
+ font-size: 16px;
+ font-weight: 300;
+ line-height: 1.4;
+}
+@media (min-width: 768px) {
+ .lead {
+ font-size: 21px;
+ }
+}
+small,
+.small {
+ font-size: 85%;
+}
+cite {
+ font-style: normal;
+}
+mark,
+.mark {
+ padding: .2em;
+ background-color: #fcf8e3;
+}
+.text-left {
+ text-align: left;
+}
+.text-right {
+ text-align: right;
+}
+.text-center {
+ text-align: center;
+}
+.text-justify {
+ text-align: justify;
+}
+.text-nowrap {
+ white-space: nowrap;
+}
+.text-lowercase {
+ text-transform: lowercase;
+}
+.text-uppercase {
+ text-transform: uppercase;
+}
+.text-capitalize {
+ text-transform: capitalize;
+}
+.text-muted {
+ color: #777;
+}
+.text-primary {
+ color: #428bca;
+}
+a.text-primary:hover {
+ color: #3071a9;
+}
+.text-success {
+ color: #3c763d;
+}
+a.text-success:hover {
+ color: #2b542c;
+}
+.text-info {
+ color: #31708f;
+}
+a.text-info:hover {
+ color: #245269;
+}
+.text-warning {
+ color: #8a6d3b;
+}
+a.text-warning:hover {
+ color: #66512c;
+}
+.text-danger {
+ color: #a94442;
+}
+a.text-danger:hover {
+ color: #843534;
+}
+.bg-primary {
+ color: #fff;
+ background-color: #428bca;
+}
+a.bg-primary:hover {
+ background-color: #3071a9;
+}
+.bg-success {
+ background-color: #dff0d8;
+}
+a.bg-success:hover {
+ background-color: #c1e2b3;
+}
+.bg-info {
+ background-color: #d9edf7;
+}
+a.bg-info:hover {
+ background-color: #afd9ee;
+}
+.bg-warning {
+ background-color: #fcf8e3;
+}
+a.bg-warning:hover {
+ background-color: #f7ecb5;
+}
+.bg-danger {
+ background-color: #f2dede;
+}
+a.bg-danger:hover {
+ background-color: #e4b9b9;
+}
+.page-header {
+ padding-bottom: 9px;
+ margin: 40px 0 20px;
+ border-bottom: 1px solid #eee;
+}
+ul,
+ol {
+ margin-top: 0;
+ margin-bottom: 10px;
+}
+ul ul,
+ol ul,
+ul ol,
+ol ol {
+ margin-bottom: 0;
+}
+.list-unstyled {
+ padding-left: 0;
+ list-style: none;
+}
+.list-inline {
+ padding-left: 0;
+ margin-left: -5px;
+ list-style: none;
+}
+.list-inline > li {
+ display: inline-block;
+ padding-right: 5px;
+ padding-left: 5px;
+}
+dl {
+ margin-top: 0;
+ margin-bottom: 20px;
+}
+dt,
+dd {
+ line-height: 1.42857143;
+}
+dt {
+ font-weight: bold;
+}
+dd {
+ margin-left: 0;
+}
+@media (min-width: 768px) {
+ .dl-horizontal dt {
+ float: left;
+ width: 160px;
+ overflow: hidden;
+ clear: left;
+ text-align: right;
+ text-overflow: ellipsis;
+ white-space: nowrap;
+ }
+ .dl-horizontal dd {
+ margin-left: 180px;
+ }
+}
+abbr[title],
+abbr[data-original-title] {
+ cursor: help;
+ border-bottom: 1px dotted #777;
+}
+.initialism {
+ font-size: 90%;
+ text-transform: uppercase;
+}
+blockquote {
+ padding: 10px 20px;
+ margin: 0 0 20px;
+ font-size: 17.5px;
+ border-left: 5px solid #eee;
+}
+blockquote p:last-child,
+blockquote ul:last-child,
+blockquote ol:last-child {
+ margin-bottom: 0;
+}
+blockquote footer,
+blockquote small,
+blockquote .small {
+ display: block;
+ font-size: 80%;
+ line-height: 1.42857143;
+ color: #777;
+}
+blockquote footer:before,
+blockquote small:before,
+blockquote .small:before {
+ content: '\2014 \00A0';
+}
+.blockquote-reverse,
+blockquote.pull-right {
+ padding-right: 15px;
+ padding-left: 0;
+ text-align: right;
+ border-right: 5px solid #eee;
+ border-left: 0;
+}
+.blockquote-reverse footer:before,
+blockquote.pull-right footer:before,
+.blockquote-reverse small:before,
+blockquote.pull-right small:before,
+.blockquote-reverse .small:before,
+blockquote.pull-right .small:before {
+ content: '';
+}
+.blockquote-reverse footer:after,
+blockquote.pull-right footer:after,
+.blockquote-reverse small:after,
+blockquote.pull-right small:after,
+.blockquote-reverse .small:after,
+blockquote.pull-right .small:after {
+ content: '\00A0 \2014';
+}
+blockquote:before,
+blockquote:after {
+ content: "";
+}
+address {
+ margin-bottom: 20px;
+ font-style: normal;
+ line-height: 1.42857143;
+}
+code,
+kbd,
+pre,
+samp {
+ font-family: Menlo, Monaco, Consolas, "Courier New", monospace;
+}
+code {
+ padding: 2px 4px;
+ font-size: 90%;
+ color: #c7254e;
+ background-color: #f9f2f4;
+ border-radius: 4px;
+}
+kbd {
+ padding: 2px 4px;
+ font-size: 90%;
+ color: #fff;
+ background-color: #333;
+ border-radius: 3px;
+ -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .25);
+ box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .25);
+}
+kbd kbd {
+ padding: 0;
+ font-size: 100%;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+}
+pre {
+ display: block;
+ padding: 9.5px;
+ margin: 0 0 10px;
+ font-size: 13px;
+ line-height: 1.42857143;
+ color: #333;
+ word-break: break-all;
+ word-wrap: break-word;
+ background-color: #f5f5f5;
+ border: 1px solid #ccc;
+ border-radius: 4px;
+}
+pre code {
+ padding: 0;
+ font-size: inherit;
+ color: inherit;
+ white-space: pre-wrap;
+ background-color: transparent;
+ border-radius: 0;
+}
+.pre-scrollable {
+ max-height: 340px;
+ overflow-y: scroll;
+}
+.container {
+ padding-right: 15px;
+ padding-left: 15px;
+ margin-right: auto;
+ margin-left: auto;
+}
+@media (min-width: 768px) {
+ .container {
+ width: 750px;
+ }
+}
+@media (min-width: 992px) {
+ .container {
+ width: 970px;
+ }
+}
+@media (min-width: 1200px) {
+ .container {
+ width: 1170px;
+ }
+}
+.container-fluid {
+ padding-right: 15px;
+ padding-left: 15px;
+ margin-right: auto;
+ margin-left: auto;
+}
+.row {
+ margin-right: -15px;
+ margin-left: -15px;
+}
+.col-xs-1, .col-sm-1, .col-md-1, .col-lg-1, .col-xs-2, .col-sm-2, .col-md-2, .col-lg-2, .col-xs-3, .col-sm-3, .col-md-3, .col-lg-3, .col-xs-4, .col-sm-4, .col-md-4, .col-lg-4, .col-xs-5, .col-sm-5, .col-md-5, .col-lg-5, .col-xs-6, .col-sm-6, .col-md-6, .col-lg-6, .col-xs-7, .col-sm-7, .col-md-7, .col-lg-7, .col-xs-8, .col-sm-8, .col-md-8, .col-lg-8, .col-xs-9, .col-sm-9, .col-md-9, .col-lg-9, .col-xs-10, .col-sm-10, .col-md-10, .col-lg-10, .col-xs-11, .col-sm-11, .col-md-11, .col-lg-11, .col-xs-12, .col-sm-12, .col-md-12, .col-lg-12 {
+ position: relative;
+ min-height: 1px;
+ padding-right: 15px;
+ padding-left: 15px;
+}
+.col-xs-1, .col-xs-2, .col-xs-3, .col-xs-4, .col-xs-5, .col-xs-6, .col-xs-7, .col-xs-8, .col-xs-9, .col-xs-10, .col-xs-11, .col-xs-12 {
+ float: left;
+}
+.col-xs-12 {
+ width: 100%;
+}
+.col-xs-11 {
+ width: 91.66666667%;
+}
+.col-xs-10 {
+ width: 83.33333333%;
+}
+.col-xs-9 {
+ width: 75%;
+}
+.col-xs-8 {
+ width: 66.66666667%;
+}
+.col-xs-7 {
+ width: 58.33333333%;
+}
+.col-xs-6 {
+ width: 50%;
+}
+.col-xs-5 {
+ width: 41.66666667%;
+}
+.col-xs-4 {
+ width: 33.33333333%;
+}
+.col-xs-3 {
+ width: 25%;
+}
+.col-xs-2 {
+ width: 16.66666667%;
+}
+.col-xs-1 {
+ width: 8.33333333%;
+}
+.col-xs-pull-12 {
+ right: 100%;
+}
+.col-xs-pull-11 {
+ right: 91.66666667%;
+}
+.col-xs-pull-10 {
+ right: 83.33333333%;
+}
+.col-xs-pull-9 {
+ right: 75%;
+}
+.col-xs-pull-8 {
+ right: 66.66666667%;
+}
+.col-xs-pull-7 {
+ right: 58.33333333%;
+}
+.col-xs-pull-6 {
+ right: 50%;
+}
+.col-xs-pull-5 {
+ right: 41.66666667%;
+}
+.col-xs-pull-4 {
+ right: 33.33333333%;
+}
+.col-xs-pull-3 {
+ right: 25%;
+}
+.col-xs-pull-2 {
+ right: 16.66666667%;
+}
+.col-xs-pull-1 {
+ right: 8.33333333%;
+}
+.col-xs-pull-0 {
+ right: auto;
+}
+.col-xs-push-12 {
+ left: 100%;
+}
+.col-xs-push-11 {
+ left: 91.66666667%;
+}
+.col-xs-push-10 {
+ left: 83.33333333%;
+}
+.col-xs-push-9 {
+ left: 75%;
+}
+.col-xs-push-8 {
+ left: 66.66666667%;
+}
+.col-xs-push-7 {
+ left: 58.33333333%;
+}
+.col-xs-push-6 {
+ left: 50%;
+}
+.col-xs-push-5 {
+ left: 41.66666667%;
+}
+.col-xs-push-4 {
+ left: 33.33333333%;
+}
+.col-xs-push-3 {
+ left: 25%;
+}
+.col-xs-push-2 {
+ left: 16.66666667%;
+}
+.col-xs-push-1 {
+ left: 8.33333333%;
+}
+.col-xs-push-0 {
+ left: auto;
+}
+.col-xs-offset-12 {
+ margin-left: 100%;
+}
+.col-xs-offset-11 {
+ margin-left: 91.66666667%;
+}
+.col-xs-offset-10 {
+ margin-left: 83.33333333%;
+}
+.col-xs-offset-9 {
+ margin-left: 75%;
+}
+.col-xs-offset-8 {
+ margin-left: 66.66666667%;
+}
+.col-xs-offset-7 {
+ margin-left: 58.33333333%;
+}
+.col-xs-offset-6 {
+ margin-left: 50%;
+}
+.col-xs-offset-5 {
+ margin-left: 41.66666667%;
+}
+.col-xs-offset-4 {
+ margin-left: 33.33333333%;
+}
+.col-xs-offset-3 {
+ margin-left: 25%;
+}
+.col-xs-offset-2 {
+ margin-left: 16.66666667%;
+}
+.col-xs-offset-1 {
+ margin-left: 8.33333333%;
+}
+.col-xs-offset-0 {
+ margin-left: 0;
+}
+@media (min-width: 768px) {
+ .col-sm-1, .col-sm-2, .col-sm-3, .col-sm-4, .col-sm-5, .col-sm-6, .col-sm-7, .col-sm-8, .col-sm-9, .col-sm-10, .col-sm-11, .col-sm-12 {
+ float: left;
+ }
+ .col-sm-12 {
+ width: 100%;
+ }
+ .col-sm-11 {
+ width: 91.66666667%;
+ }
+ .col-sm-10 {
+ width: 83.33333333%;
+ }
+ .col-sm-9 {
+ width: 75%;
+ }
+ .col-sm-8 {
+ width: 66.66666667%;
+ }
+ .col-sm-7 {
+ width: 58.33333333%;
+ }
+ .col-sm-6 {
+ width: 50%;
+ }
+ .col-sm-5 {
+ width: 41.66666667%;
+ }
+ .col-sm-4 {
+ width: 33.33333333%;
+ }
+ .col-sm-3 {
+ width: 25%;
+ }
+ .col-sm-2 {
+ width: 16.66666667%;
+ }
+ .col-sm-1 {
+ width: 8.33333333%;
+ }
+ .col-sm-pull-12 {
+ right: 100%;
+ }
+ .col-sm-pull-11 {
+ right: 91.66666667%;
+ }
+ .col-sm-pull-10 {
+ right: 83.33333333%;
+ }
+ .col-sm-pull-9 {
+ right: 75%;
+ }
+ .col-sm-pull-8 {
+ right: 66.66666667%;
+ }
+ .col-sm-pull-7 {
+ right: 58.33333333%;
+ }
+ .col-sm-pull-6 {
+ right: 50%;
+ }
+ .col-sm-pull-5 {
+ right: 41.66666667%;
+ }
+ .col-sm-pull-4 {
+ right: 33.33333333%;
+ }
+ .col-sm-pull-3 {
+ right: 25%;
+ }
+ .col-sm-pull-2 {
+ right: 16.66666667%;
+ }
+ .col-sm-pull-1 {
+ right: 8.33333333%;
+ }
+ .col-sm-pull-0 {
+ right: auto;
+ }
+ .col-sm-push-12 {
+ left: 100%;
+ }
+ .col-sm-push-11 {
+ left: 91.66666667%;
+ }
+ .col-sm-push-10 {
+ left: 83.33333333%;
+ }
+ .col-sm-push-9 {
+ left: 75%;
+ }
+ .col-sm-push-8 {
+ left: 66.66666667%;
+ }
+ .col-sm-push-7 {
+ left: 58.33333333%;
+ }
+ .col-sm-push-6 {
+ left: 50%;
+ }
+ .col-sm-push-5 {
+ left: 41.66666667%;
+ }
+ .col-sm-push-4 {
+ left: 33.33333333%;
+ }
+ .col-sm-push-3 {
+ left: 25%;
+ }
+ .col-sm-push-2 {
+ left: 16.66666667%;
+ }
+ .col-sm-push-1 {
+ left: 8.33333333%;
+ }
+ .col-sm-push-0 {
+ left: auto;
+ }
+ .col-sm-offset-12 {
+ margin-left: 100%;
+ }
+ .col-sm-offset-11 {
+ margin-left: 91.66666667%;
+ }
+ .col-sm-offset-10 {
+ margin-left: 83.33333333%;
+ }
+ .col-sm-offset-9 {
+ margin-left: 75%;
+ }
+ .col-sm-offset-8 {
+ margin-left: 66.66666667%;
+ }
+ .col-sm-offset-7 {
+ margin-left: 58.33333333%;
+ }
+ .col-sm-offset-6 {
+ margin-left: 50%;
+ }
+ .col-sm-offset-5 {
+ margin-left: 41.66666667%;
+ }
+ .col-sm-offset-4 {
+ margin-left: 33.33333333%;
+ }
+ .col-sm-offset-3 {
+ margin-left: 25%;
+ }
+ .col-sm-offset-2 {
+ margin-left: 16.66666667%;
+ }
+ .col-sm-offset-1 {
+ margin-left: 8.33333333%;
+ }
+ .col-sm-offset-0 {
+ margin-left: 0;
+ }
+}
+@media (min-width: 992px) {
+ .col-md-1, .col-md-2, .col-md-3, .col-md-4, .col-md-5, .col-md-6, .col-md-7, .col-md-8, .col-md-9, .col-md-10, .col-md-11, .col-md-12 {
+ float: left;
+ }
+ .col-md-12 {
+ width: 100%;
+ }
+ .col-md-11 {
+ width: 91.66666667%;
+ }
+ .col-md-10 {
+ width: 83.33333333%;
+ }
+ .col-md-9 {
+ width: 75%;
+ }
+ .col-md-8 {
+ width: 66.66666667%;
+ }
+ .col-md-7 {
+ width: 58.33333333%;
+ }
+ .col-md-6 {
+ width: 50%;
+ }
+ .col-md-5 {
+ width: 41.66666667%;
+ }
+ .col-md-4 {
+ width: 33.33333333%;
+ }
+ .col-md-3 {
+ width: 25%;
+ }
+ .col-md-2 {
+ width: 16.66666667%;
+ }
+ .col-md-1 {
+ width: 8.33333333%;
+ }
+ .col-md-pull-12 {
+ right: 100%;
+ }
+ .col-md-pull-11 {
+ right: 91.66666667%;
+ }
+ .col-md-pull-10 {
+ right: 83.33333333%;
+ }
+ .col-md-pull-9 {
+ right: 75%;
+ }
+ .col-md-pull-8 {
+ right: 66.66666667%;
+ }
+ .col-md-pull-7 {
+ right: 58.33333333%;
+ }
+ .col-md-pull-6 {
+ right: 50%;
+ }
+ .col-md-pull-5 {
+ right: 41.66666667%;
+ }
+ .col-md-pull-4 {
+ right: 33.33333333%;
+ }
+ .col-md-pull-3 {
+ right: 25%;
+ }
+ .col-md-pull-2 {
+ right: 16.66666667%;
+ }
+ .col-md-pull-1 {
+ right: 8.33333333%;
+ }
+ .col-md-pull-0 {
+ right: auto;
+ }
+ .col-md-push-12 {
+ left: 100%;
+ }
+ .col-md-push-11 {
+ left: 91.66666667%;
+ }
+ .col-md-push-10 {
+ left: 83.33333333%;
+ }
+ .col-md-push-9 {
+ left: 75%;
+ }
+ .col-md-push-8 {
+ left: 66.66666667%;
+ }
+ .col-md-push-7 {
+ left: 58.33333333%;
+ }
+ .col-md-push-6 {
+ left: 50%;
+ }
+ .col-md-push-5 {
+ left: 41.66666667%;
+ }
+ .col-md-push-4 {
+ left: 33.33333333%;
+ }
+ .col-md-push-3 {
+ left: 25%;
+ }
+ .col-md-push-2 {
+ left: 16.66666667%;
+ }
+ .col-md-push-1 {
+ left: 8.33333333%;
+ }
+ .col-md-push-0 {
+ left: auto;
+ }
+ .col-md-offset-12 {
+ margin-left: 100%;
+ }
+ .col-md-offset-11 {
+ margin-left: 91.66666667%;
+ }
+ .col-md-offset-10 {
+ margin-left: 83.33333333%;
+ }
+ .col-md-offset-9 {
+ margin-left: 75%;
+ }
+ .col-md-offset-8 {
+ margin-left: 66.66666667%;
+ }
+ .col-md-offset-7 {
+ margin-left: 58.33333333%;
+ }
+ .col-md-offset-6 {
+ margin-left: 50%;
+ }
+ .col-md-offset-5 {
+ margin-left: 41.66666667%;
+ }
+ .col-md-offset-4 {
+ margin-left: 33.33333333%;
+ }
+ .col-md-offset-3 {
+ margin-left: 25%;
+ }
+ .col-md-offset-2 {
+ margin-left: 16.66666667%;
+ }
+ .col-md-offset-1 {
+ margin-left: 8.33333333%;
+ }
+ .col-md-offset-0 {
+ margin-left: 0;
+ }
+}
+@media (min-width: 1200px) {
+ .col-lg-1, .col-lg-2, .col-lg-3, .col-lg-4, .col-lg-5, .col-lg-6, .col-lg-7, .col-lg-8, .col-lg-9, .col-lg-10, .col-lg-11, .col-lg-12 {
+ float: left;
+ }
+ .col-lg-12 {
+ width: 100%;
+ }
+ .col-lg-11 {
+ width: 91.66666667%;
+ }
+ .col-lg-10 {
+ width: 83.33333333%;
+ }
+ .col-lg-9 {
+ width: 75%;
+ }
+ .col-lg-8 {
+ width: 66.66666667%;
+ }
+ .col-lg-7 {
+ width: 58.33333333%;
+ }
+ .col-lg-6 {
+ width: 50%;
+ }
+ .col-lg-5 {
+ width: 41.66666667%;
+ }
+ .col-lg-4 {
+ width: 33.33333333%;
+ }
+ .col-lg-3 {
+ width: 25%;
+ }
+ .col-lg-2 {
+ width: 16.66666667%;
+ }
+ .col-lg-1 {
+ width: 8.33333333%;
+ }
+ .col-lg-pull-12 {
+ right: 100%;
+ }
+ .col-lg-pull-11 {
+ right: 91.66666667%;
+ }
+ .col-lg-pull-10 {
+ right: 83.33333333%;
+ }
+ .col-lg-pull-9 {
+ right: 75%;
+ }
+ .col-lg-pull-8 {
+ right: 66.66666667%;
+ }
+ .col-lg-pull-7 {
+ right: 58.33333333%;
+ }
+ .col-lg-pull-6 {
+ right: 50%;
+ }
+ .col-lg-pull-5 {
+ right: 41.66666667%;
+ }
+ .col-lg-pull-4 {
+ right: 33.33333333%;
+ }
+ .col-lg-pull-3 {
+ right: 25%;
+ }
+ .col-lg-pull-2 {
+ right: 16.66666667%;
+ }
+ .col-lg-pull-1 {
+ right: 8.33333333%;
+ }
+ .col-lg-pull-0 {
+ right: auto;
+ }
+ .col-lg-push-12 {
+ left: 100%;
+ }
+ .col-lg-push-11 {
+ left: 91.66666667%;
+ }
+ .col-lg-push-10 {
+ left: 83.33333333%;
+ }
+ .col-lg-push-9 {
+ left: 75%;
+ }
+ .col-lg-push-8 {
+ left: 66.66666667%;
+ }
+ .col-lg-push-7 {
+ left: 58.33333333%;
+ }
+ .col-lg-push-6 {
+ left: 50%;
+ }
+ .col-lg-push-5 {
+ left: 41.66666667%;
+ }
+ .col-lg-push-4 {
+ left: 33.33333333%;
+ }
+ .col-lg-push-3 {
+ left: 25%;
+ }
+ .col-lg-push-2 {
+ left: 16.66666667%;
+ }
+ .col-lg-push-1 {
+ left: 8.33333333%;
+ }
+ .col-lg-push-0 {
+ left: auto;
+ }
+ .col-lg-offset-12 {
+ margin-left: 100%;
+ }
+ .col-lg-offset-11 {
+ margin-left: 91.66666667%;
+ }
+ .col-lg-offset-10 {
+ margin-left: 83.33333333%;
+ }
+ .col-lg-offset-9 {
+ margin-left: 75%;
+ }
+ .col-lg-offset-8 {
+ margin-left: 66.66666667%;
+ }
+ .col-lg-offset-7 {
+ margin-left: 58.33333333%;
+ }
+ .col-lg-offset-6 {
+ margin-left: 50%;
+ }
+ .col-lg-offset-5 {
+ margin-left: 41.66666667%;
+ }
+ .col-lg-offset-4 {
+ margin-left: 33.33333333%;
+ }
+ .col-lg-offset-3 {
+ margin-left: 25%;
+ }
+ .col-lg-offset-2 {
+ margin-left: 16.66666667%;
+ }
+ .col-lg-offset-1 {
+ margin-left: 8.33333333%;
+ }
+ .col-lg-offset-0 {
+ margin-left: 0;
+ }
+}
+table {
+ background-color: transparent;
+}
+th {
+ text-align: left;
+}
+.table {
+ width: 100%;
+ max-width: 100%;
+ margin-bottom: 20px;
+}
+.table > thead > tr > th,
+.table > tbody > tr > th,
+.table > tfoot > tr > th,
+.table > thead > tr > td,
+.table > tbody > tr > td,
+.table > tfoot > tr > td {
+ padding: 8px;
+ line-height: 1.42857143;
+ vertical-align: top;
+ border-top: 1px solid #ddd;
+}
+.table > thead > tr > th {
+ vertical-align: bottom;
+ border-bottom: 2px solid #ddd;
+}
+.table > caption + thead > tr:first-child > th,
+.table > colgroup + thead > tr:first-child > th,
+.table > thead:first-child > tr:first-child > th,
+.table > caption + thead > tr:first-child > td,
+.table > colgroup + thead > tr:first-child > td,
+.table > thead:first-child > tr:first-child > td {
+ border-top: 0;
+}
+.table > tbody + tbody {
+ border-top: 2px solid #ddd;
+}
+.table .table {
+ background-color: #fff;
+}
+.table-condensed > thead > tr > th,
+.table-condensed > tbody > tr > th,
+.table-condensed > tfoot > tr > th,
+.table-condensed > thead > tr > td,
+.table-condensed > tbody > tr > td,
+.table-condensed > tfoot > tr > td {
+ padding: 5px;
+}
+.table-bordered {
+ border: 1px solid #ddd;
+}
+.table-bordered > thead > tr > th,
+.table-bordered > tbody > tr > th,
+.table-bordered > tfoot > tr > th,
+.table-bordered > thead > tr > td,
+.table-bordered > tbody > tr > td,
+.table-bordered > tfoot > tr > td {
+ border: 1px solid #ddd;
+}
+.table-bordered > thead > tr > th,
+.table-bordered > thead > tr > td {
+ border-bottom-width: 2px;
+}
+.table-striped > tbody > tr:nth-child(odd) > td,
+.table-striped > tbody > tr:nth-child(odd) > th {
+ background-color: #f9f9f9;
+}
+.table-hover > tbody > tr:hover > td,
+.table-hover > tbody > tr:hover > th {
+ background-color: #f5f5f5;
+}
+table col[class*="col-"] {
+ position: static;
+ display: table-column;
+ float: none;
+}
+table td[class*="col-"],
+table th[class*="col-"] {
+ position: static;
+ display: table-cell;
+ float: none;
+}
+.table > thead > tr > td.active,
+.table > tbody > tr > td.active,
+.table > tfoot > tr > td.active,
+.table > thead > tr > th.active,
+.table > tbody > tr > th.active,
+.table > tfoot > tr > th.active,
+.table > thead > tr.active > td,
+.table > tbody > tr.active > td,
+.table > tfoot > tr.active > td,
+.table > thead > tr.active > th,
+.table > tbody > tr.active > th,
+.table > tfoot > tr.active > th {
+ background-color: #f5f5f5;
+}
+.table-hover > tbody > tr > td.active:hover,
+.table-hover > tbody > tr > th.active:hover,
+.table-hover > tbody > tr.active:hover > td,
+.table-hover > tbody > tr:hover > .active,
+.table-hover > tbody > tr.active:hover > th {
+ background-color: #e8e8e8;
+}
+.table > thead > tr > td.success,
+.table > tbody > tr > td.success,
+.table > tfoot > tr > td.success,
+.table > thead > tr > th.success,
+.table > tbody > tr > th.success,
+.table > tfoot > tr > th.success,
+.table > thead > tr.success > td,
+.table > tbody > tr.success > td,
+.table > tfoot > tr.success > td,
+.table > thead > tr.success > th,
+.table > tbody > tr.success > th,
+.table > tfoot > tr.success > th {
+ background-color: #dff0d8;
+}
+.table-hover > tbody > tr > td.success:hover,
+.table-hover > tbody > tr > th.success:hover,
+.table-hover > tbody > tr.success:hover > td,
+.table-hover > tbody > tr:hover > .success,
+.table-hover > tbody > tr.success:hover > th {
+ background-color: #d0e9c6;
+}
+.table > thead > tr > td.info,
+.table > tbody > tr > td.info,
+.table > tfoot > tr > td.info,
+.table > thead > tr > th.info,
+.table > tbody > tr > th.info,
+.table > tfoot > tr > th.info,
+.table > thead > tr.info > td,
+.table > tbody > tr.info > td,
+.table > tfoot > tr.info > td,
+.table > thead > tr.info > th,
+.table > tbody > tr.info > th,
+.table > tfoot > tr.info > th {
+ background-color: #d9edf7;
+}
+.table-hover > tbody > tr > td.info:hover,
+.table-hover > tbody > tr > th.info:hover,
+.table-hover > tbody > tr.info:hover > td,
+.table-hover > tbody > tr:hover > .info,
+.table-hover > tbody > tr.info:hover > th {
+ background-color: #c4e3f3;
+}
+.table > thead > tr > td.warning,
+.table > tbody > tr > td.warning,
+.table > tfoot > tr > td.warning,
+.table > thead > tr > th.warning,
+.table > tbody > tr > th.warning,
+.table > tfoot > tr > th.warning,
+.table > thead > tr.warning > td,
+.table > tbody > tr.warning > td,
+.table > tfoot > tr.warning > td,
+.table > thead > tr.warning > th,
+.table > tbody > tr.warning > th,
+.table > tfoot > tr.warning > th {
+ background-color: #fcf8e3;
+}
+.table-hover > tbody > tr > td.warning:hover,
+.table-hover > tbody > tr > th.warning:hover,
+.table-hover > tbody > tr.warning:hover > td,
+.table-hover > tbody > tr:hover > .warning,
+.table-hover > tbody > tr.warning:hover > th {
+ background-color: #faf2cc;
+}
+.table > thead > tr > td.danger,
+.table > tbody > tr > td.danger,
+.table > tfoot > tr > td.danger,
+.table > thead > tr > th.danger,
+.table > tbody > tr > th.danger,
+.table > tfoot > tr > th.danger,
+.table > thead > tr.danger > td,
+.table > tbody > tr.danger > td,
+.table > tfoot > tr.danger > td,
+.table > thead > tr.danger > th,
+.table > tbody > tr.danger > th,
+.table > tfoot > tr.danger > th {
+ background-color: #f2dede;
+}
+.table-hover > tbody > tr > td.danger:hover,
+.table-hover > tbody > tr > th.danger:hover,
+.table-hover > tbody > tr.danger:hover > td,
+.table-hover > tbody > tr:hover > .danger,
+.table-hover > tbody > tr.danger:hover > th {
+ background-color: #ebcccc;
+}
+@media screen and (max-width: 767px) {
+ .table-responsive {
+ width: 100%;
+ margin-bottom: 15px;
+ overflow-x: auto;
+ overflow-y: hidden;
+ -webkit-overflow-scrolling: touch;
+ -ms-overflow-style: -ms-autohiding-scrollbar;
+ border: 1px solid #ddd;
+ }
+ .table-responsive > .table {
+ margin-bottom: 0;
+ }
+ .table-responsive > .table > thead > tr > th,
+ .table-responsive > .table > tbody > tr > th,
+ .table-responsive > .table > tfoot > tr > th,
+ .table-responsive > .table > thead > tr > td,
+ .table-responsive > .table > tbody > tr > td,
+ .table-responsive > .table > tfoot > tr > td {
+ white-space: nowrap;
+ }
+ .table-responsive > .table-bordered {
+ border: 0;
+ }
+ .table-responsive > .table-bordered > thead > tr > th:first-child,
+ .table-responsive > .table-bordered > tbody > tr > th:first-child,
+ .table-responsive > .table-bordered > tfoot > tr > th:first-child,
+ .table-responsive > .table-bordered > thead > tr > td:first-child,
+ .table-responsive > .table-bordered > tbody > tr > td:first-child,
+ .table-responsive > .table-bordered > tfoot > tr > td:first-child {
+ border-left: 0;
+ }
+ .table-responsive > .table-bordered > thead > tr > th:last-child,
+ .table-responsive > .table-bordered > tbody > tr > th:last-child,
+ .table-responsive > .table-bordered > tfoot > tr > th:last-child,
+ .table-responsive > .table-bordered > thead > tr > td:last-child,
+ .table-responsive > .table-bordered > tbody > tr > td:last-child,
+ .table-responsive > .table-bordered > tfoot > tr > td:last-child {
+ border-right: 0;
+ }
+ .table-responsive > .table-bordered > tbody > tr:last-child > th,
+ .table-responsive > .table-bordered > tfoot > tr:last-child > th,
+ .table-responsive > .table-bordered > tbody > tr:last-child > td,
+ .table-responsive > .table-bordered > tfoot > tr:last-child > td {
+ border-bottom: 0;
+ }
+}
+fieldset {
+ min-width: 0;
+ padding: 0;
+ margin: 0;
+ border: 0;
+}
+legend {
+ display: block;
+ width: 100%;
+ padding: 0;
+ margin-bottom: 20px;
+ font-size: 21px;
+ line-height: inherit;
+ color: #333;
+ border: 0;
+ border-bottom: 1px solid #e5e5e5;
+}
+label {
+ display: inline-block;
+ max-width: 100%;
+ margin-bottom: 5px;
+ font-weight: bold;
+}
+input[type="search"] {
+ -webkit-box-sizing: border-box;
+ -moz-box-sizing: border-box;
+ box-sizing: border-box;
+}
+input[type="radio"],
+input[type="checkbox"] {
+ margin: 4px 0 0;
+ margin-top: 1px \9;
+ line-height: normal;
+}
+input[type="file"] {
+ display: block;
+}
+input[type="range"] {
+ display: block;
+ width: 100%;
+}
+select[multiple],
+select[size] {
+ height: auto;
+}
+input[type="file"]:focus,
+input[type="radio"]:focus,
+input[type="checkbox"]:focus {
+ outline: thin dotted;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px;
+}
+output {
+ display: block;
+ padding-top: 7px;
+ font-size: 14px;
+ line-height: 1.42857143;
+ color: #555;
+}
+.form-control {
+ display: block;
+ width: 100%;
+ height: 34px;
+ padding: 6px 12px;
+ font-size: 14px;
+ line-height: 1.42857143;
+ color: #555;
+ background-color: #fff;
+ background-image: none;
+ border: 1px solid #ccc;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+ -webkit-transition: border-color ease-in-out .15s, -webkit-box-shadow ease-in-out .15s;
+ -o-transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;
+ transition: border-color ease-in-out .15s, box-shadow ease-in-out .15s;
+}
+.form-control:focus {
+ border-color: #66afe9;
+ outline: 0;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, .6);
+ box-shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px rgba(102, 175, 233, .6);
+}
+.form-control::-moz-placeholder {
+ color: #777;
+ opacity: 1;
+}
+.form-control:-ms-input-placeholder {
+ color: #777;
+}
+.form-control::-webkit-input-placeholder {
+ color: #777;
+}
+.form-control[disabled],
+.form-control[readonly],
+fieldset[disabled] .form-control {
+ cursor: not-allowed;
+ background-color: #eee;
+ opacity: 1;
+}
+textarea.form-control {
+ height: auto;
+}
+input[type="search"] {
+ -webkit-appearance: none;
+}
+input[type="date"],
+input[type="time"],
+input[type="datetime-local"],
+input[type="month"] {
+ line-height: 34px;
+ line-height: 1.42857143 \0;
+}
+input[type="date"].input-sm,
+input[type="time"].input-sm,
+input[type="datetime-local"].input-sm,
+input[type="month"].input-sm {
+ line-height: 30px;
+}
+input[type="date"].input-lg,
+input[type="time"].input-lg,
+input[type="datetime-local"].input-lg,
+input[type="month"].input-lg {
+ line-height: 46px;
+}
+.form-group {
+ margin-bottom: 15px;
+}
+.radio,
+.checkbox {
+ position: relative;
+ display: block;
+ min-height: 20px;
+ margin-top: 10px;
+ margin-bottom: 10px;
+}
+.radio label,
+.checkbox label {
+ padding-left: 20px;
+ margin-bottom: 0;
+ font-weight: normal;
+ cursor: pointer;
+}
+.radio input[type="radio"],
+.radio-inline input[type="radio"],
+.checkbox input[type="checkbox"],
+.checkbox-inline input[type="checkbox"] {
+ position: absolute;
+ margin-top: 4px \9;
+ margin-left: -20px;
+}
+.radio + .radio,
+.checkbox + .checkbox {
+ margin-top: -5px;
+}
+.radio-inline,
+.checkbox-inline {
+ display: inline-block;
+ padding-left: 20px;
+ margin-bottom: 0;
+ font-weight: normal;
+ vertical-align: middle;
+ cursor: pointer;
+}
+.radio-inline + .radio-inline,
+.checkbox-inline + .checkbox-inline {
+ margin-top: 0;
+ margin-left: 10px;
+}
+input[type="radio"][disabled],
+input[type="checkbox"][disabled],
+input[type="radio"].disabled,
+input[type="checkbox"].disabled,
+fieldset[disabled] input[type="radio"],
+fieldset[disabled] input[type="checkbox"] {
+ cursor: not-allowed;
+}
+.radio-inline.disabled,
+.checkbox-inline.disabled,
+fieldset[disabled] .radio-inline,
+fieldset[disabled] .checkbox-inline {
+ cursor: not-allowed;
+}
+.radio.disabled label,
+.checkbox.disabled label,
+fieldset[disabled] .radio label,
+fieldset[disabled] .checkbox label {
+ cursor: not-allowed;
+}
+.form-control-static {
+ padding-top: 7px;
+ padding-bottom: 7px;
+ margin-bottom: 0;
+}
+.form-control-static.input-lg,
+.form-control-static.input-sm {
+ padding-right: 0;
+ padding-left: 0;
+}
+.input-sm,
+.form-horizontal .form-group-sm .form-control {
+ height: 30px;
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+select.input-sm {
+ height: 30px;
+ line-height: 30px;
+}
+textarea.input-sm,
+select[multiple].input-sm {
+ height: auto;
+}
+.input-lg,
+.form-horizontal .form-group-lg .form-control {
+ height: 46px;
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+select.input-lg {
+ height: 46px;
+ line-height: 46px;
+}
+textarea.input-lg,
+select[multiple].input-lg {
+ height: auto;
+}
+.has-feedback {
+ position: relative;
+}
+.has-feedback .form-control {
+ padding-right: 42.5px;
+}
+.form-control-feedback {
+ position: absolute;
+ top: 25px;
+ right: 0;
+ z-index: 2;
+ display: block;
+ width: 34px;
+ height: 34px;
+ line-height: 34px;
+ text-align: center;
+}
+.input-lg + .form-control-feedback {
+ width: 46px;
+ height: 46px;
+ line-height: 46px;
+}
+.input-sm + .form-control-feedback {
+ width: 30px;
+ height: 30px;
+ line-height: 30px;
+}
+.has-success .help-block,
+.has-success .control-label,
+.has-success .radio,
+.has-success .checkbox,
+.has-success .radio-inline,
+.has-success .checkbox-inline {
+ color: #3c763d;
+}
+.has-success .form-control {
+ border-color: #3c763d;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+}
+.has-success .form-control:focus {
+ border-color: #2b542c;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #67b168;
+}
+.has-success .input-group-addon {
+ color: #3c763d;
+ background-color: #dff0d8;
+ border-color: #3c763d;
+}
+.has-success .form-control-feedback {
+ color: #3c763d;
+}
+.has-warning .help-block,
+.has-warning .control-label,
+.has-warning .radio,
+.has-warning .checkbox,
+.has-warning .radio-inline,
+.has-warning .checkbox-inline {
+ color: #8a6d3b;
+}
+.has-warning .form-control {
+ border-color: #8a6d3b;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+}
+.has-warning .form-control:focus {
+ border-color: #66512c;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #c0a16b;
+}
+.has-warning .input-group-addon {
+ color: #8a6d3b;
+ background-color: #fcf8e3;
+ border-color: #8a6d3b;
+}
+.has-warning .form-control-feedback {
+ color: #8a6d3b;
+}
+.has-error .help-block,
+.has-error .control-label,
+.has-error .radio,
+.has-error .checkbox,
+.has-error .radio-inline,
+.has-error .checkbox-inline {
+ color: #a94442;
+}
+.has-error .form-control {
+ border-color: #a94442;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075);
+}
+.has-error .form-control:focus {
+ border-color: #843534;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483;
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .075), 0 0 6px #ce8483;
+}
+.has-error .input-group-addon {
+ color: #a94442;
+ background-color: #f2dede;
+ border-color: #a94442;
+}
+.has-error .form-control-feedback {
+ color: #a94442;
+}
+.has-feedback label.sr-only ~ .form-control-feedback {
+ top: 0;
+}
+.help-block {
+ display: block;
+ margin-top: 5px;
+ margin-bottom: 10px;
+ color: #737373;
+}
+@media (min-width: 768px) {
+ .form-inline .form-group {
+ display: inline-block;
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .form-inline .form-control {
+ display: inline-block;
+ width: auto;
+ vertical-align: middle;
+ }
+ .form-inline .input-group {
+ display: inline-table;
+ vertical-align: middle;
+ }
+ .form-inline .input-group .input-group-addon,
+ .form-inline .input-group .input-group-btn,
+ .form-inline .input-group .form-control {
+ width: auto;
+ }
+ .form-inline .input-group > .form-control {
+ width: 100%;
+ }
+ .form-inline .control-label {
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .form-inline .radio,
+ .form-inline .checkbox {
+ display: inline-block;
+ margin-top: 0;
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .form-inline .radio label,
+ .form-inline .checkbox label {
+ padding-left: 0;
+ }
+ .form-inline .radio input[type="radio"],
+ .form-inline .checkbox input[type="checkbox"] {
+ position: relative;
+ margin-left: 0;
+ }
+ .form-inline .has-feedback .form-control-feedback {
+ top: 0;
+ }
+}
+.form-horizontal .radio,
+.form-horizontal .checkbox,
+.form-horizontal .radio-inline,
+.form-horizontal .checkbox-inline {
+ padding-top: 7px;
+ margin-top: 0;
+ margin-bottom: 0;
+}
+.form-horizontal .radio,
+.form-horizontal .checkbox {
+ min-height: 27px;
+}
+.form-horizontal .form-group {
+ margin-right: -15px;
+ margin-left: -15px;
+}
+@media (min-width: 768px) {
+ .form-horizontal .control-label {
+ padding-top: 7px;
+ margin-bottom: 0;
+ text-align: right;
+ }
+}
+.form-horizontal .has-feedback .form-control-feedback {
+ top: 0;
+ right: 15px;
+}
+@media (min-width: 768px) {
+ .form-horizontal .form-group-lg .control-label {
+ padding-top: 14.3px;
+ }
+}
+@media (min-width: 768px) {
+ .form-horizontal .form-group-sm .control-label {
+ padding-top: 6px;
+ }
+}
+.btn {
+ display: inline-block;
+ padding: 6px 12px;
+ margin-bottom: 0;
+ font-size: 14px;
+ font-weight: normal;
+ line-height: 1.42857143;
+ text-align: center;
+ white-space: nowrap;
+ vertical-align: middle;
+ cursor: pointer;
+ -webkit-user-select: none;
+ -moz-user-select: none;
+ -ms-user-select: none;
+ user-select: none;
+ background-image: none;
+ border: 1px solid transparent;
+ border-radius: 4px;
+}
+.btn:focus,
+.btn:active:focus,
+.btn.active:focus {
+ outline: thin dotted;
+ outline: 5px auto -webkit-focus-ring-color;
+ outline-offset: -2px;
+}
+.btn:hover,
+.btn:focus {
+ color: #333;
+ text-decoration: none;
+}
+.btn:active,
+.btn.active {
+ background-image: none;
+ outline: 0;
+ -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+ box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+}
+.btn.disabled,
+.btn[disabled],
+fieldset[disabled] .btn {
+ pointer-events: none;
+ cursor: not-allowed;
+ filter: alpha(opacity=65);
+ -webkit-box-shadow: none;
+ box-shadow: none;
+ opacity: .65;
+}
+.btn-default {
+ color: #333;
+ background-color: #fff;
+ border-color: #ccc;
+}
+.btn-default:hover,
+.btn-default:focus,
+.btn-default:active,
+.btn-default.active,
+.open > .dropdown-toggle.btn-default {
+ color: #333;
+ background-color: #e6e6e6;
+ border-color: #adadad;
+}
+.btn-default:active,
+.btn-default.active,
+.open > .dropdown-toggle.btn-default {
+ background-image: none;
+}
+.btn-default.disabled,
+.btn-default[disabled],
+fieldset[disabled] .btn-default,
+.btn-default.disabled:hover,
+.btn-default[disabled]:hover,
+fieldset[disabled] .btn-default:hover,
+.btn-default.disabled:focus,
+.btn-default[disabled]:focus,
+fieldset[disabled] .btn-default:focus,
+.btn-default.disabled:active,
+.btn-default[disabled]:active,
+fieldset[disabled] .btn-default:active,
+.btn-default.disabled.active,
+.btn-default[disabled].active,
+fieldset[disabled] .btn-default.active {
+ background-color: #fff;
+ border-color: #ccc;
+}
+.btn-default .badge {
+ color: #fff;
+ background-color: #333;
+}
+.btn-primary {
+ color: #fff;
+ background-color: #428bca;
+ border-color: #357ebd;
+}
+.btn-primary:hover,
+.btn-primary:focus,
+.btn-primary:active,
+.btn-primary.active,
+.open > .dropdown-toggle.btn-primary {
+ color: #fff;
+ background-color: #3071a9;
+ border-color: #285e8e;
+}
+.btn-primary:active,
+.btn-primary.active,
+.open > .dropdown-toggle.btn-primary {
+ background-image: none;
+}
+.btn-primary.disabled,
+.btn-primary[disabled],
+fieldset[disabled] .btn-primary,
+.btn-primary.disabled:hover,
+.btn-primary[disabled]:hover,
+fieldset[disabled] .btn-primary:hover,
+.btn-primary.disabled:focus,
+.btn-primary[disabled]:focus,
+fieldset[disabled] .btn-primary:focus,
+.btn-primary.disabled:active,
+.btn-primary[disabled]:active,
+fieldset[disabled] .btn-primary:active,
+.btn-primary.disabled.active,
+.btn-primary[disabled].active,
+fieldset[disabled] .btn-primary.active {
+ background-color: #428bca;
+ border-color: #357ebd;
+}
+.btn-primary .badge {
+ color: #428bca;
+ background-color: #fff;
+}
+.btn-success {
+ color: #fff;
+ background-color: #5cb85c;
+ border-color: #4cae4c;
+}
+.btn-success:hover,
+.btn-success:focus,
+.btn-success:active,
+.btn-success.active,
+.open > .dropdown-toggle.btn-success {
+ color: #fff;
+ background-color: #449d44;
+ border-color: #398439;
+}
+.btn-success:active,
+.btn-success.active,
+.open > .dropdown-toggle.btn-success {
+ background-image: none;
+}
+.btn-success.disabled,
+.btn-success[disabled],
+fieldset[disabled] .btn-success,
+.btn-success.disabled:hover,
+.btn-success[disabled]:hover,
+fieldset[disabled] .btn-success:hover,
+.btn-success.disabled:focus,
+.btn-success[disabled]:focus,
+fieldset[disabled] .btn-success:focus,
+.btn-success.disabled:active,
+.btn-success[disabled]:active,
+fieldset[disabled] .btn-success:active,
+.btn-success.disabled.active,
+.btn-success[disabled].active,
+fieldset[disabled] .btn-success.active {
+ background-color: #5cb85c;
+ border-color: #4cae4c;
+}
+.btn-success .badge {
+ color: #5cb85c;
+ background-color: #fff;
+}
+.btn-info {
+ color: #fff;
+ background-color: #5bc0de;
+ border-color: #46b8da;
+}
+.btn-info:hover,
+.btn-info:focus,
+.btn-info:active,
+.btn-info.active,
+.open > .dropdown-toggle.btn-info {
+ color: #fff;
+ background-color: #31b0d5;
+ border-color: #269abc;
+}
+.btn-info:active,
+.btn-info.active,
+.open > .dropdown-toggle.btn-info {
+ background-image: none;
+}
+.btn-info.disabled,
+.btn-info[disabled],
+fieldset[disabled] .btn-info,
+.btn-info.disabled:hover,
+.btn-info[disabled]:hover,
+fieldset[disabled] .btn-info:hover,
+.btn-info.disabled:focus,
+.btn-info[disabled]:focus,
+fieldset[disabled] .btn-info:focus,
+.btn-info.disabled:active,
+.btn-info[disabled]:active,
+fieldset[disabled] .btn-info:active,
+.btn-info.disabled.active,
+.btn-info[disabled].active,
+fieldset[disabled] .btn-info.active {
+ background-color: #5bc0de;
+ border-color: #46b8da;
+}
+.btn-info .badge {
+ color: #5bc0de;
+ background-color: #fff;
+}
+.btn-warning {
+ color: #fff;
+ background-color: #f0ad4e;
+ border-color: #eea236;
+}
+.btn-warning:hover,
+.btn-warning:focus,
+.btn-warning:active,
+.btn-warning.active,
+.open > .dropdown-toggle.btn-warning {
+ color: #fff;
+ background-color: #ec971f;
+ border-color: #d58512;
+}
+.btn-warning:active,
+.btn-warning.active,
+.open > .dropdown-toggle.btn-warning {
+ background-image: none;
+}
+.btn-warning.disabled,
+.btn-warning[disabled],
+fieldset[disabled] .btn-warning,
+.btn-warning.disabled:hover,
+.btn-warning[disabled]:hover,
+fieldset[disabled] .btn-warning:hover,
+.btn-warning.disabled:focus,
+.btn-warning[disabled]:focus,
+fieldset[disabled] .btn-warning:focus,
+.btn-warning.disabled:active,
+.btn-warning[disabled]:active,
+fieldset[disabled] .btn-warning:active,
+.btn-warning.disabled.active,
+.btn-warning[disabled].active,
+fieldset[disabled] .btn-warning.active {
+ background-color: #f0ad4e;
+ border-color: #eea236;
+}
+.btn-warning .badge {
+ color: #f0ad4e;
+ background-color: #fff;
+}
+.btn-danger {
+ color: #fff;
+ background-color: #d9534f;
+ border-color: #d43f3a;
+}
+.btn-danger:hover,
+.btn-danger:focus,
+.btn-danger:active,
+.btn-danger.active,
+.open > .dropdown-toggle.btn-danger {
+ color: #fff;
+ background-color: #c9302c;
+ border-color: #ac2925;
+}
+.btn-danger:active,
+.btn-danger.active,
+.open > .dropdown-toggle.btn-danger {
+ background-image: none;
+}
+.btn-danger.disabled,
+.btn-danger[disabled],
+fieldset[disabled] .btn-danger,
+.btn-danger.disabled:hover,
+.btn-danger[disabled]:hover,
+fieldset[disabled] .btn-danger:hover,
+.btn-danger.disabled:focus,
+.btn-danger[disabled]:focus,
+fieldset[disabled] .btn-danger:focus,
+.btn-danger.disabled:active,
+.btn-danger[disabled]:active,
+fieldset[disabled] .btn-danger:active,
+.btn-danger.disabled.active,
+.btn-danger[disabled].active,
+fieldset[disabled] .btn-danger.active {
+ background-color: #d9534f;
+ border-color: #d43f3a;
+}
+.btn-danger .badge {
+ color: #d9534f;
+ background-color: #fff;
+}
+.btn-link {
+ font-weight: normal;
+ color: #428bca;
+ cursor: pointer;
+ border-radius: 0;
+}
+.btn-link,
+.btn-link:active,
+.btn-link[disabled],
+fieldset[disabled] .btn-link {
+ background-color: transparent;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+}
+.btn-link,
+.btn-link:hover,
+.btn-link:focus,
+.btn-link:active {
+ border-color: transparent;
+}
+.btn-link:hover,
+.btn-link:focus {
+ color: #2a6496;
+ text-decoration: underline;
+ background-color: transparent;
+}
+.btn-link[disabled]:hover,
+fieldset[disabled] .btn-link:hover,
+.btn-link[disabled]:focus,
+fieldset[disabled] .btn-link:focus {
+ color: #777;
+ text-decoration: none;
+}
+.btn-lg,
+.btn-group-lg > .btn {
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+.btn-sm,
+.btn-group-sm > .btn {
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+.btn-xs,
+.btn-group-xs > .btn {
+ padding: 1px 5px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+.btn-block {
+ display: block;
+ width: 100%;
+}
+.btn-block + .btn-block {
+ margin-top: 5px;
+}
+input[type="submit"].btn-block,
+input[type="reset"].btn-block,
+input[type="button"].btn-block {
+ width: 100%;
+}
+.fade {
+ opacity: 0;
+ -webkit-transition: opacity .15s linear;
+ -o-transition: opacity .15s linear;
+ transition: opacity .15s linear;
+}
+.fade.in {
+ opacity: 1;
+}
+.collapse {
+ display: none;
+}
+.collapse.in {
+ display: block;
+}
+tr.collapse.in {
+ display: table-row;
+}
+tbody.collapse.in {
+ display: table-row-group;
+}
+.collapsing {
+ position: relative;
+ height: 0;
+ overflow: hidden;
+ -webkit-transition: height .35s ease;
+ -o-transition: height .35s ease;
+ transition: height .35s ease;
+}
+.caret {
+ display: inline-block;
+ width: 0;
+ height: 0;
+ margin-left: 2px;
+ vertical-align: middle;
+ border-top: 4px solid;
+ border-right: 4px solid transparent;
+ border-left: 4px solid transparent;
+}
+.dropdown {
+ position: relative;
+}
+.dropdown-toggle:focus {
+ outline: 0;
+}
+.dropdown-menu {
+ position: absolute;
+ top: 100%;
+ left: 0;
+ z-index: 1000;
+ display: none;
+ float: left;
+ min-width: 160px;
+ padding: 5px 0;
+ margin: 2px 0 0;
+ font-size: 14px;
+ text-align: left;
+ list-style: none;
+ background-color: #fff;
+ -webkit-background-clip: padding-box;
+ background-clip: padding-box;
+ border: 1px solid #ccc;
+ border: 1px solid rgba(0, 0, 0, .15);
+ border-radius: 4px;
+ -webkit-box-shadow: 0 6px 12px rgba(0, 0, 0, .175);
+ box-shadow: 0 6px 12px rgba(0, 0, 0, .175);
+}
+.dropdown-menu.pull-right {
+ right: 0;
+ left: auto;
+}
+.dropdown-menu .divider {
+ height: 1px;
+ margin: 9px 0;
+ overflow: hidden;
+ background-color: #e5e5e5;
+}
+.dropdown-menu > li > a {
+ display: block;
+ padding: 3px 20px;
+ clear: both;
+ font-weight: normal;
+ line-height: 1.42857143;
+ color: #333;
+ white-space: nowrap;
+}
+.dropdown-menu > li > a:hover,
+.dropdown-menu > li > a:focus {
+ color: #262626;
+ text-decoration: none;
+ background-color: #f5f5f5;
+}
+.dropdown-menu > .active > a,
+.dropdown-menu > .active > a:hover,
+.dropdown-menu > .active > a:focus {
+ color: #fff;
+ text-decoration: none;
+ background-color: #428bca;
+ outline: 0;
+}
+.dropdown-menu > .disabled > a,
+.dropdown-menu > .disabled > a:hover,
+.dropdown-menu > .disabled > a:focus {
+ color: #777;
+}
+.dropdown-menu > .disabled > a:hover,
+.dropdown-menu > .disabled > a:focus {
+ text-decoration: none;
+ cursor: not-allowed;
+ background-color: transparent;
+ background-image: none;
+ filter: progid:DXImageTransform.Microsoft.gradient(enabled = false);
+}
+.open > .dropdown-menu {
+ display: block;
+}
+.open > a {
+ outline: 0;
+}
+.dropdown-menu-right {
+ right: 0;
+ left: auto;
+}
+.dropdown-menu-left {
+ right: auto;
+ left: 0;
+}
+.dropdown-header {
+ display: block;
+ padding: 3px 20px;
+ font-size: 12px;
+ line-height: 1.42857143;
+ color: #777;
+ white-space: nowrap;
+}
+.dropdown-backdrop {
+ position: fixed;
+ top: 0;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ z-index: 990;
+}
+.pull-right > .dropdown-menu {
+ right: 0;
+ left: auto;
+}
+.dropup .caret,
+.navbar-fixed-bottom .dropdown .caret {
+ content: "";
+ border-top: 0;
+ border-bottom: 4px solid;
+}
+.dropup .dropdown-menu,
+.navbar-fixed-bottom .dropdown .dropdown-menu {
+ top: auto;
+ bottom: 100%;
+ margin-bottom: 1px;
+}
+@media (min-width: 768px) {
+ .navbar-right .dropdown-menu {
+ right: 0;
+ left: auto;
+ }
+ .navbar-right .dropdown-menu-left {
+ right: auto;
+ left: 0;
+ }
+}
+.btn-group,
+.btn-group-vertical {
+ position: relative;
+ display: inline-block;
+ vertical-align: middle;
+}
+.btn-group > .btn,
+.btn-group-vertical > .btn {
+ position: relative;
+ float: left;
+}
+.btn-group > .btn:hover,
+.btn-group-vertical > .btn:hover,
+.btn-group > .btn:focus,
+.btn-group-vertical > .btn:focus,
+.btn-group > .btn:active,
+.btn-group-vertical > .btn:active,
+.btn-group > .btn.active,
+.btn-group-vertical > .btn.active {
+ z-index: 2;
+}
+.btn-group > .btn:focus,
+.btn-group-vertical > .btn:focus {
+ outline: 0;
+}
+.btn-group .btn + .btn,
+.btn-group .btn + .btn-group,
+.btn-group .btn-group + .btn,
+.btn-group .btn-group + .btn-group {
+ margin-left: -1px;
+}
+.btn-toolbar {
+ margin-left: -5px;
+}
+.btn-toolbar .btn-group,
+.btn-toolbar .input-group {
+ float: left;
+}
+.btn-toolbar > .btn,
+.btn-toolbar > .btn-group,
+.btn-toolbar > .input-group {
+ margin-left: 5px;
+}
+.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {
+ border-radius: 0;
+}
+.btn-group > .btn:first-child {
+ margin-left: 0;
+}
+.btn-group > .btn:first-child:not(:last-child):not(.dropdown-toggle) {
+ border-top-right-radius: 0;
+ border-bottom-right-radius: 0;
+}
+.btn-group > .btn:last-child:not(:first-child),
+.btn-group > .dropdown-toggle:not(:first-child) {
+ border-top-left-radius: 0;
+ border-bottom-left-radius: 0;
+}
+.btn-group > .btn-group {
+ float: left;
+}
+.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn {
+ border-radius: 0;
+}
+.btn-group > .btn-group:first-child > .btn:last-child,
+.btn-group > .btn-group:first-child > .dropdown-toggle {
+ border-top-right-radius: 0;
+ border-bottom-right-radius: 0;
+}
+.btn-group > .btn-group:last-child > .btn:first-child {
+ border-top-left-radius: 0;
+ border-bottom-left-radius: 0;
+}
+.btn-group .dropdown-toggle:active,
+.btn-group.open .dropdown-toggle {
+ outline: 0;
+}
+.btn-group > .btn + .dropdown-toggle {
+ padding-right: 8px;
+ padding-left: 8px;
+}
+.btn-group > .btn-lg + .dropdown-toggle {
+ padding-right: 12px;
+ padding-left: 12px;
+}
+.btn-group.open .dropdown-toggle {
+ -webkit-box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+ box-shadow: inset 0 3px 5px rgba(0, 0, 0, .125);
+}
+.btn-group.open .dropdown-toggle.btn-link {
+ -webkit-box-shadow: none;
+ box-shadow: none;
+}
+.btn .caret {
+ margin-left: 0;
+}
+.btn-lg .caret {
+ border-width: 5px 5px 0;
+ border-bottom-width: 0;
+}
+.dropup .btn-lg .caret {
+ border-width: 0 5px 5px;
+}
+.btn-group-vertical > .btn,
+.btn-group-vertical > .btn-group,
+.btn-group-vertical > .btn-group > .btn {
+ display: block;
+ float: none;
+ width: 100%;
+ max-width: 100%;
+}
+.btn-group-vertical > .btn-group > .btn {
+ float: none;
+}
+.btn-group-vertical > .btn + .btn,
+.btn-group-vertical > .btn + .btn-group,
+.btn-group-vertical > .btn-group + .btn,
+.btn-group-vertical > .btn-group + .btn-group {
+ margin-top: -1px;
+ margin-left: 0;
+}
+.btn-group-vertical > .btn:not(:first-child):not(:last-child) {
+ border-radius: 0;
+}
+.btn-group-vertical > .btn:first-child:not(:last-child) {
+ border-top-right-radius: 4px;
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+}
+.btn-group-vertical > .btn:last-child:not(:first-child) {
+ border-top-left-radius: 0;
+ border-top-right-radius: 0;
+ border-bottom-left-radius: 4px;
+}
+.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn {
+ border-radius: 0;
+}
+.btn-group-vertical > .btn-group:first-child:not(:last-child) > .btn:last-child,
+.btn-group-vertical > .btn-group:first-child:not(:last-child) > .dropdown-toggle {
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+}
+.btn-group-vertical > .btn-group:last-child:not(:first-child) > .btn:first-child {
+ border-top-left-radius: 0;
+ border-top-right-radius: 0;
+}
+.btn-group-justified {
+ display: table;
+ width: 100%;
+ table-layout: fixed;
+ border-collapse: separate;
+}
+.btn-group-justified > .btn,
+.btn-group-justified > .btn-group {
+ display: table-cell;
+ float: none;
+ width: 1%;
+}
+.btn-group-justified > .btn-group .btn {
+ width: 100%;
+}
+.btn-group-justified > .btn-group .dropdown-menu {
+ left: auto;
+}
+[data-toggle="buttons"] > .btn > input[type="radio"],
+[data-toggle="buttons"] > .btn > input[type="checkbox"] {
+ position: absolute;
+ z-index: -1;
+ filter: alpha(opacity=0);
+ opacity: 0;
+}
+.input-group {
+ position: relative;
+ display: table;
+ border-collapse: separate;
+}
+.input-group[class*="col-"] {
+ float: none;
+ padding-right: 0;
+ padding-left: 0;
+}
+.input-group .form-control {
+ position: relative;
+ z-index: 2;
+ float: left;
+ width: 100%;
+ margin-bottom: 0;
+}
+.input-group-lg > .form-control,
+.input-group-lg > .input-group-addon,
+.input-group-lg > .input-group-btn > .btn {
+ height: 46px;
+ padding: 10px 16px;
+ font-size: 18px;
+ line-height: 1.33;
+ border-radius: 6px;
+}
+select.input-group-lg > .form-control,
+select.input-group-lg > .input-group-addon,
+select.input-group-lg > .input-group-btn > .btn {
+ height: 46px;
+ line-height: 46px;
+}
+textarea.input-group-lg > .form-control,
+textarea.input-group-lg > .input-group-addon,
+textarea.input-group-lg > .input-group-btn > .btn,
+select[multiple].input-group-lg > .form-control,
+select[multiple].input-group-lg > .input-group-addon,
+select[multiple].input-group-lg > .input-group-btn > .btn {
+ height: auto;
+}
+.input-group-sm > .form-control,
+.input-group-sm > .input-group-addon,
+.input-group-sm > .input-group-btn > .btn {
+ height: 30px;
+ padding: 5px 10px;
+ font-size: 12px;
+ line-height: 1.5;
+ border-radius: 3px;
+}
+select.input-group-sm > .form-control,
+select.input-group-sm > .input-group-addon,
+select.input-group-sm > .input-group-btn > .btn {
+ height: 30px;
+ line-height: 30px;
+}
+textarea.input-group-sm > .form-control,
+textarea.input-group-sm > .input-group-addon,
+textarea.input-group-sm > .input-group-btn > .btn,
+select[multiple].input-group-sm > .form-control,
+select[multiple].input-group-sm > .input-group-addon,
+select[multiple].input-group-sm > .input-group-btn > .btn {
+ height: auto;
+}
+.input-group-addon,
+.input-group-btn,
+.input-group .form-control {
+ display: table-cell;
+}
+.input-group-addon:not(:first-child):not(:last-child),
+.input-group-btn:not(:first-child):not(:last-child),
+.input-group .form-control:not(:first-child):not(:last-child) {
+ border-radius: 0;
+}
+.input-group-addon,
+.input-group-btn {
+ width: 1%;
+ white-space: nowrap;
+ vertical-align: middle;
+}
+.input-group-addon {
+ padding: 6px 12px;
+ font-size: 14px;
+ font-weight: normal;
+ line-height: 1;
+ color: #555;
+ text-align: center;
+ background-color: #eee;
+ border: 1px solid #ccc;
+ border-radius: 4px;
+}
+.input-group-addon.input-sm {
+ padding: 5px 10px;
+ font-size: 12px;
+ border-radius: 3px;
+}
+.input-group-addon.input-lg {
+ padding: 10px 16px;
+ font-size: 18px;
+ border-radius: 6px;
+}
+.input-group-addon input[type="radio"],
+.input-group-addon input[type="checkbox"] {
+ margin-top: 0;
+}
+.input-group .form-control:first-child,
+.input-group-addon:first-child,
+.input-group-btn:first-child > .btn,
+.input-group-btn:first-child > .btn-group > .btn,
+.input-group-btn:first-child > .dropdown-toggle,
+.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle),
+.input-group-btn:last-child > .btn-group:not(:last-child) > .btn {
+ border-top-right-radius: 0;
+ border-bottom-right-radius: 0;
+}
+.input-group-addon:first-child {
+ border-right: 0;
+}
+.input-group .form-control:last-child,
+.input-group-addon:last-child,
+.input-group-btn:last-child > .btn,
+.input-group-btn:last-child > .btn-group > .btn,
+.input-group-btn:last-child > .dropdown-toggle,
+.input-group-btn:first-child > .btn:not(:first-child),
+.input-group-btn:first-child > .btn-group:not(:first-child) > .btn {
+ border-top-left-radius: 0;
+ border-bottom-left-radius: 0;
+}
+.input-group-addon:last-child {
+ border-left: 0;
+}
+.input-group-btn {
+ position: relative;
+ font-size: 0;
+ white-space: nowrap;
+}
+.input-group-btn > .btn {
+ position: relative;
+}
+.input-group-btn > .btn + .btn {
+ margin-left: -1px;
+}
+.input-group-btn > .btn:hover,
+.input-group-btn > .btn:focus,
+.input-group-btn > .btn:active {
+ z-index: 2;
+}
+.input-group-btn:first-child > .btn,
+.input-group-btn:first-child > .btn-group {
+ margin-right: -1px;
+}
+.input-group-btn:last-child > .btn,
+.input-group-btn:last-child > .btn-group {
+ margin-left: -1px;
+}
+.nav {
+ padding-left: 0;
+ margin-bottom: 0;
+ list-style: none;
+}
+.nav > li {
+ position: relative;
+ display: block;
+}
+.nav > li > a {
+ position: relative;
+ display: block;
+ padding: 10px 15px;
+}
+.nav > li > a:hover,
+.nav > li > a:focus {
+ text-decoration: none;
+ background-color: #eee;
+}
+.nav > li.disabled > a {
+ color: #777;
+}
+.nav > li.disabled > a:hover,
+.nav > li.disabled > a:focus {
+ color: #777;
+ text-decoration: none;
+ cursor: not-allowed;
+ background-color: transparent;
+}
+.nav .open > a,
+.nav .open > a:hover,
+.nav .open > a:focus {
+ background-color: #eee;
+ border-color: #428bca;
+}
+.nav .nav-divider {
+ height: 1px;
+ margin: 9px 0;
+ overflow: hidden;
+ background-color: #e5e5e5;
+}
+.nav > li > a > img {
+ max-width: none;
+}
+.nav-tabs {
+ border-bottom: 1px solid #ddd;
+}
+.nav-tabs > li {
+ float: left;
+ margin-bottom: -1px;
+}
+.nav-tabs > li > a {
+ margin-right: 2px;
+ line-height: 1.42857143;
+ border: 1px solid transparent;
+ border-radius: 4px 4px 0 0;
+}
+.nav-tabs > li > a:hover {
+ border-color: #eee #eee #ddd;
+}
+.nav-tabs > li.active > a,
+.nav-tabs > li.active > a:hover,
+.nav-tabs > li.active > a:focus {
+ color: #555;
+ cursor: default;
+ background-color: #fff;
+ border: 1px solid #ddd;
+ border-bottom-color: transparent;
+}
+.nav-tabs.nav-justified {
+ width: 100%;
+ border-bottom: 0;
+}
+.nav-tabs.nav-justified > li {
+ float: none;
+}
+.nav-tabs.nav-justified > li > a {
+ margin-bottom: 5px;
+ text-align: center;
+}
+.nav-tabs.nav-justified > .dropdown .dropdown-menu {
+ top: auto;
+ left: auto;
+}
+@media (min-width: 768px) {
+ .nav-tabs.nav-justified > li {
+ display: table-cell;
+ width: 1%;
+ }
+ .nav-tabs.nav-justified > li > a {
+ margin-bottom: 0;
+ }
+}
+.nav-tabs.nav-justified > li > a {
+ margin-right: 0;
+ border-radius: 4px;
+}
+.nav-tabs.nav-justified > .active > a,
+.nav-tabs.nav-justified > .active > a:hover,
+.nav-tabs.nav-justified > .active > a:focus {
+ border: 1px solid #ddd;
+}
+@media (min-width: 768px) {
+ .nav-tabs.nav-justified > li > a {
+ border-bottom: 1px solid #ddd;
+ border-radius: 4px 4px 0 0;
+ }
+ .nav-tabs.nav-justified > .active > a,
+ .nav-tabs.nav-justified > .active > a:hover,
+ .nav-tabs.nav-justified > .active > a:focus {
+ border-bottom-color: #fff;
+ }
+}
+.nav-pills > li {
+ float: left;
+}
+.nav-pills > li > a {
+ border-radius: 4px;
+}
+.nav-pills > li + li {
+ margin-left: 2px;
+}
+.nav-pills > li.active > a,
+.nav-pills > li.active > a:hover,
+.nav-pills > li.active > a:focus {
+ color: #fff;
+ background-color: #428bca;
+}
+.nav-stacked > li {
+ float: none;
+}
+.nav-stacked > li + li {
+ margin-top: 2px;
+ margin-left: 0;
+}
+.nav-justified {
+ width: 100%;
+}
+.nav-justified > li {
+ float: none;
+}
+.nav-justified > li > a {
+ margin-bottom: 5px;
+ text-align: center;
+}
+.nav-justified > .dropdown .dropdown-menu {
+ top: auto;
+ left: auto;
+}
+@media (min-width: 768px) {
+ .nav-justified > li {
+ display: table-cell;
+ width: 1%;
+ }
+ .nav-justified > li > a {
+ margin-bottom: 0;
+ }
+}
+.nav-tabs-justified {
+ border-bottom: 0;
+}
+.nav-tabs-justified > li > a {
+ margin-right: 0;
+ border-radius: 4px;
+}
+.nav-tabs-justified > .active > a,
+.nav-tabs-justified > .active > a:hover,
+.nav-tabs-justified > .active > a:focus {
+ border: 1px solid #ddd;
+}
+@media (min-width: 768px) {
+ .nav-tabs-justified > li > a {
+ border-bottom: 1px solid #ddd;
+ border-radius: 4px 4px 0 0;
+ }
+ .nav-tabs-justified > .active > a,
+ .nav-tabs-justified > .active > a:hover,
+ .nav-tabs-justified > .active > a:focus {
+ border-bottom-color: #fff;
+ }
+}
+.tab-content > .tab-pane {
+ display: none;
+}
+.tab-content > .active {
+ display: block;
+}
+.nav-tabs .dropdown-menu {
+ margin-top: -1px;
+ border-top-left-radius: 0;
+ border-top-right-radius: 0;
+}
+.navbar {
+ position: relative;
+ min-height: 50px;
+ margin-bottom: 20px;
+ border: 1px solid transparent;
+}
+@media (min-width: 768px) {
+ .navbar {
+ border-radius: 4px;
+ }
+}
+@media (min-width: 768px) {
+ .navbar-header {
+ float: left;
+ }
+}
+.navbar-collapse {
+ padding-right: 15px;
+ padding-left: 15px;
+ overflow-x: visible;
+ -webkit-overflow-scrolling: touch;
+ border-top: 1px solid transparent;
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1);
+}
+.navbar-collapse.in {
+ overflow-y: auto;
+}
+@media (min-width: 768px) {
+ .navbar-collapse {
+ width: auto;
+ border-top: 0;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+ }
+ .navbar-collapse.collapse {
+ display: block !important;
+ height: auto !important;
+ padding-bottom: 0;
+ overflow: visible !important;
+ }
+ .navbar-collapse.in {
+ overflow-y: visible;
+ }
+ .navbar-fixed-top .navbar-collapse,
+ .navbar-static-top .navbar-collapse,
+ .navbar-fixed-bottom .navbar-collapse {
+ padding-right: 0;
+ padding-left: 0;
+ }
+}
+.navbar-fixed-top .navbar-collapse,
+.navbar-fixed-bottom .navbar-collapse {
+ max-height: 340px;
+}
+@media (max-width: 480px) and (orientation: landscape) {
+ .navbar-fixed-top .navbar-collapse,
+ .navbar-fixed-bottom .navbar-collapse {
+ max-height: 200px;
+ }
+}
+.container > .navbar-header,
+.container-fluid > .navbar-header,
+.container > .navbar-collapse,
+.container-fluid > .navbar-collapse {
+ margin-right: -15px;
+ margin-left: -15px;
+}
+@media (min-width: 768px) {
+ .container > .navbar-header,
+ .container-fluid > .navbar-header,
+ .container > .navbar-collapse,
+ .container-fluid > .navbar-collapse {
+ margin-right: 0;
+ margin-left: 0;
+ }
+}
+.navbar-static-top {
+ z-index: 1000;
+ border-width: 0 0 1px;
+}
+@media (min-width: 768px) {
+ .navbar-static-top {
+ border-radius: 0;
+ }
+}
+.navbar-fixed-top,
+.navbar-fixed-bottom {
+ position: fixed;
+ right: 0;
+ left: 0;
+ z-index: 1030;
+ -webkit-transform: translate3d(0, 0, 0);
+ -o-transform: translate3d(0, 0, 0);
+ transform: translate3d(0, 0, 0);
+}
+@media (min-width: 768px) {
+ .navbar-fixed-top,
+ .navbar-fixed-bottom {
+ border-radius: 0;
+ }
+}
+.navbar-fixed-top {
+ top: 0;
+ border-width: 0 0 1px;
+}
+.navbar-fixed-bottom {
+ bottom: 0;
+ margin-bottom: 0;
+ border-width: 1px 0 0;
+}
+.navbar-brand {
+ float: left;
+ height: 50px;
+ padding: 15px 15px;
+ font-size: 18px;
+ line-height: 20px;
+}
+.navbar-brand:hover,
+.navbar-brand:focus {
+ text-decoration: none;
+}
+@media (min-width: 768px) {
+ .navbar > .container .navbar-brand,
+ .navbar > .container-fluid .navbar-brand {
+ margin-left: -15px;
+ }
+}
+.navbar-toggle {
+ position: relative;
+ float: right;
+ padding: 9px 10px;
+ margin-top: 8px;
+ margin-right: 15px;
+ margin-bottom: 8px;
+ background-color: transparent;
+ background-image: none;
+ border: 1px solid transparent;
+ border-radius: 4px;
+}
+.navbar-toggle:focus {
+ outline: 0;
+}
+.navbar-toggle .icon-bar {
+ display: block;
+ width: 22px;
+ height: 2px;
+ border-radius: 1px;
+}
+.navbar-toggle .icon-bar + .icon-bar {
+ margin-top: 4px;
+}
+@media (min-width: 768px) {
+ .navbar-toggle {
+ display: none;
+ }
+}
+.navbar-nav {
+ margin: 7.5px -15px;
+}
+.navbar-nav > li > a {
+ padding-top: 10px;
+ padding-bottom: 10px;
+ line-height: 20px;
+}
+@media (max-width: 767px) {
+ .navbar-nav .open .dropdown-menu {
+ position: static;
+ float: none;
+ width: auto;
+ margin-top: 0;
+ background-color: transparent;
+ border: 0;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+ }
+ .navbar-nav .open .dropdown-menu > li > a,
+ .navbar-nav .open .dropdown-menu .dropdown-header {
+ padding: 5px 15px 5px 25px;
+ }
+ .navbar-nav .open .dropdown-menu > li > a {
+ line-height: 20px;
+ }
+ .navbar-nav .open .dropdown-menu > li > a:hover,
+ .navbar-nav .open .dropdown-menu > li > a:focus {
+ background-image: none;
+ }
+}
+@media (min-width: 768px) {
+ .navbar-nav {
+ float: left;
+ margin: 0;
+ }
+ .navbar-nav > li {
+ float: left;
+ }
+ .navbar-nav > li > a {
+ padding-top: 15px;
+ padding-bottom: 15px;
+ }
+ .navbar-nav.navbar-right:last-child {
+ margin-right: -15px;
+ }
+}
+@media (min-width: 768px) {
+ .navbar-left {
+ float: left !important;
+ }
+ .navbar-right {
+ float: right !important;
+ }
+}
+.navbar-form {
+ padding: 10px 15px;
+ margin-top: 8px;
+ margin-right: -15px;
+ margin-bottom: 8px;
+ margin-left: -15px;
+ border-top: 1px solid transparent;
+ border-bottom: 1px solid transparent;
+ -webkit-box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1);
+ box-shadow: inset 0 1px 0 rgba(255, 255, 255, .1), 0 1px 0 rgba(255, 255, 255, .1);
+}
+@media (min-width: 768px) {
+ .navbar-form .form-group {
+ display: inline-block;
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .navbar-form .form-control {
+ display: inline-block;
+ width: auto;
+ vertical-align: middle;
+ }
+ .navbar-form .input-group {
+ display: inline-table;
+ vertical-align: middle;
+ }
+ .navbar-form .input-group .input-group-addon,
+ .navbar-form .input-group .input-group-btn,
+ .navbar-form .input-group .form-control {
+ width: auto;
+ }
+ .navbar-form .input-group > .form-control {
+ width: 100%;
+ }
+ .navbar-form .control-label {
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .navbar-form .radio,
+ .navbar-form .checkbox {
+ display: inline-block;
+ margin-top: 0;
+ margin-bottom: 0;
+ vertical-align: middle;
+ }
+ .navbar-form .radio label,
+ .navbar-form .checkbox label {
+ padding-left: 0;
+ }
+ .navbar-form .radio input[type="radio"],
+ .navbar-form .checkbox input[type="checkbox"] {
+ position: relative;
+ margin-left: 0;
+ }
+ .navbar-form .has-feedback .form-control-feedback {
+ top: 0;
+ }
+}
+@media (max-width: 767px) {
+ .navbar-form .form-group {
+ margin-bottom: 5px;
+ }
+}
+@media (min-width: 768px) {
+ .navbar-form {
+ width: auto;
+ padding-top: 0;
+ padding-bottom: 0;
+ margin-right: 0;
+ margin-left: 0;
+ border: 0;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+ }
+ .navbar-form.navbar-right:last-child {
+ margin-right: -15px;
+ }
+}
+.navbar-nav > li > .dropdown-menu {
+ margin-top: 0;
+ border-top-left-radius: 0;
+ border-top-right-radius: 0;
+}
+.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu {
+ border-bottom-right-radius: 0;
+ border-bottom-left-radius: 0;
+}
+.navbar-btn {
+ margin-top: 8px;
+ margin-bottom: 8px;
+}
+.navbar-btn.btn-sm {
+ margin-top: 10px;
+ margin-bottom: 10px;
+}
+.navbar-btn.btn-xs {
+ margin-top: 14px;
+ margin-bottom: 14px;
+}
+.navbar-text {
+ margin-top: 15px;
+ margin-bottom: 15px;
+}
+@media (min-width: 768px) {
+ .navbar-text {
+ float: left;
+ margin-right: 15px;
+ margin-left: 15px;
+ }
+ .navbar-text.navbar-right:last-child {
+ margin-right: 0;
+ }
+}
+.navbar-default {
+ background-color: #f8f8f8;
+ border-color: #e7e7e7;
+}
+.navbar-default .navbar-brand {
+ color: #777;
+}
+.navbar-default .navbar-brand:hover,
+.navbar-default .navbar-brand:focus {
+ color: #5e5e5e;
+ background-color: transparent;
+}
+.navbar-default .navbar-text {
+ color: #777;
+}
+.navbar-default .navbar-nav > li > a {
+ color: #777;
+}
+.navbar-default .navbar-nav > li > a:hover,
+.navbar-default .navbar-nav > li > a:focus {
+ color: #333;
+ background-color: transparent;
+}
+.navbar-default .navbar-nav > .active > a,
+.navbar-default .navbar-nav > .active > a:hover,
+.navbar-default .navbar-nav > .active > a:focus {
+ color: #555;
+ background-color: #e7e7e7;
+}
+.navbar-default .navbar-nav > .disabled > a,
+.navbar-default .navbar-nav > .disabled > a:hover,
+.navbar-default .navbar-nav > .disabled > a:focus {
+ color: #ccc;
+ background-color: transparent;
+}
+.navbar-default .navbar-toggle {
+ border-color: #ddd;
+}
+.navbar-default .navbar-toggle:hover,
+.navbar-default .navbar-toggle:focus {
+ background-color: #ddd;
+}
+.navbar-default .navbar-toggle .icon-bar {
+ background-color: #888;
+}
+.navbar-default .navbar-collapse,
+.navbar-default .navbar-form {
+ border-color: #e7e7e7;
+}
+.navbar-default .navbar-nav > .open > a,
+.navbar-default .navbar-nav > .open > a:hover,
+.navbar-default .navbar-nav > .open > a:focus {
+ color: #555;
+ background-color: #e7e7e7;
+}
+@media (max-width: 767px) {
+ .navbar-default .navbar-nav .open .dropdown-menu > li > a {
+ color: #777;
+ }
+ .navbar-default .navbar-nav .open .dropdown-menu > li > a:hover,
+ .navbar-default .navbar-nav .open .dropdown-menu > li > a:focus {
+ color: #333;
+ background-color: transparent;
+ }
+ .navbar-default .navbar-nav .open .dropdown-menu > .active > a,
+ .navbar-default .navbar-nav .open .dropdown-menu > .active > a:hover,
+ .navbar-default .navbar-nav .open .dropdown-menu > .active > a:focus {
+ color: #555;
+ background-color: #e7e7e7;
+ }
+ .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a,
+ .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:hover,
+ .navbar-default .navbar-nav .open .dropdown-menu > .disabled > a:focus {
+ color: #ccc;
+ background-color: transparent;
+ }
+}
+.navbar-default .navbar-link {
+ color: #777;
+}
+.navbar-default .navbar-link:hover {
+ color: #333;
+}
+.navbar-default .btn-link {
+ color: #777;
+}
+.navbar-default .btn-link:hover,
+.navbar-default .btn-link:focus {
+ color: #333;
+}
+.navbar-default .btn-link[disabled]:hover,
+fieldset[disabled] .navbar-default .btn-link:hover,
+.navbar-default .btn-link[disabled]:focus,
+fieldset[disabled] .navbar-default .btn-link:focus {
+ color: #ccc;
+}
+.navbar-inverse {
+ background-color: #222;
+ border-color: #080808;
+}
+.navbar-inverse .navbar-brand {
+ color: #777;
+}
+.navbar-inverse .navbar-brand:hover,
+.navbar-inverse .navbar-brand:focus {
+ color: #fff;
+ background-color: transparent;
+}
+.navbar-inverse .navbar-text {
+ color: #777;
+}
+.navbar-inverse .navbar-nav > li > a {
+ color: #777;
+}
+.navbar-inverse .navbar-nav > li > a:hover,
+.navbar-inverse .navbar-nav > li > a:focus {
+ color: #fff;
+ background-color: transparent;
+}
+.navbar-inverse .navbar-nav > .active > a,
+.navbar-inverse .navbar-nav > .active > a:hover,
+.navbar-inverse .navbar-nav > .active > a:focus {
+ color: #fff;
+ background-color: #080808;
+}
+.navbar-inverse .navbar-nav > .disabled > a,
+.navbar-inverse .navbar-nav > .disabled > a:hover,
+.navbar-inverse .navbar-nav > .disabled > a:focus {
+ color: #444;
+ background-color: transparent;
+}
+.navbar-inverse .navbar-toggle {
+ border-color: #333;
+}
+.navbar-inverse .navbar-toggle:hover,
+.navbar-inverse .navbar-toggle:focus {
+ background-color: #333;
+}
+.navbar-inverse .navbar-toggle .icon-bar {
+ background-color: #fff;
+}
+.navbar-inverse .navbar-collapse,
+.navbar-inverse .navbar-form {
+ border-color: #101010;
+}
+.navbar-inverse .navbar-nav > .open > a,
+.navbar-inverse .navbar-nav > .open > a:hover,
+.navbar-inverse .navbar-nav > .open > a:focus {
+ color: #fff;
+ background-color: #080808;
+}
+@media (max-width: 767px) {
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .dropdown-header {
+ border-color: #080808;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu .divider {
+ background-color: #080808;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > li > a {
+ color: #777;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:hover,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > li > a:focus {
+ color: #fff;
+ background-color: transparent;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:hover,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .active > a:focus {
+ color: #fff;
+ background-color: #080808;
+ }
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:hover,
+ .navbar-inverse .navbar-nav .open .dropdown-menu > .disabled > a:focus {
+ color: #444;
+ background-color: transparent;
+ }
+}
+.navbar-inverse .navbar-link {
+ color: #777;
+}
+.navbar-inverse .navbar-link:hover {
+ color: #fff;
+}
+.navbar-inverse .btn-link {
+ color: #777;
+}
+.navbar-inverse .btn-link:hover,
+.navbar-inverse .btn-link:focus {
+ color: #fff;
+}
+.navbar-inverse .btn-link[disabled]:hover,
+fieldset[disabled] .navbar-inverse .btn-link:hover,
+.navbar-inverse .btn-link[disabled]:focus,
+fieldset[disabled] .navbar-inverse .btn-link:focus {
+ color: #444;
+}
+.breadcrumb {
+ padding: 8px 15px;
+ margin-bottom: 20px;
+ list-style: none;
+ background-color: #f5f5f5;
+ border-radius: 4px;
+}
+.breadcrumb > li {
+ display: inline-block;
+}
+.breadcrumb > li + li:before {
+ padding: 0 5px;
+ color: #ccc;
+ content: "/\00a0";
+}
+.breadcrumb > .active {
+ color: #777;
+}
+.pagination {
+ display: inline-block;
+ padding-left: 0;
+ margin: 20px 0;
+ border-radius: 4px;
+}
+.pagination > li {
+ display: inline;
+}
+.pagination > li > a,
+.pagination > li > span {
+ position: relative;
+ float: left;
+ padding: 6px 12px;
+ margin-left: -1px;
+ line-height: 1.42857143;
+ color: #428bca;
+ text-decoration: none;
+ background-color: #fff;
+ border: 1px solid #ddd;
+}
+.pagination > li:first-child > a,
+.pagination > li:first-child > span {
+ margin-left: 0;
+ border-top-left-radius: 4px;
+ border-bottom-left-radius: 4px;
+}
+.pagination > li:last-child > a,
+.pagination > li:last-child > span {
+ border-top-right-radius: 4px;
+ border-bottom-right-radius: 4px;
+}
+.pagination > li > a:hover,
+.pagination > li > span:hover,
+.pagination > li > a:focus,
+.pagination > li > span:focus {
+ color: #2a6496;
+ background-color: #eee;
+ border-color: #ddd;
+}
+.pagination > .active > a,
+.pagination > .active > span,
+.pagination > .active > a:hover,
+.pagination > .active > span:hover,
+.pagination > .active > a:focus,
+.pagination > .active > span:focus {
+ z-index: 2;
+ color: #fff;
+ cursor: default;
+ background-color: #428bca;
+ border-color: #428bca;
+}
+.pagination > .disabled > span,
+.pagination > .disabled > span:hover,
+.pagination > .disabled > span:focus,
+.pagination > .disabled > a,
+.pagination > .disabled > a:hover,
+.pagination > .disabled > a:focus {
+ color: #777;
+ cursor: not-allowed;
+ background-color: #fff;
+ border-color: #ddd;
+}
+.pagination-lg > li > a,
+.pagination-lg > li > span {
+ padding: 10px 16px;
+ font-size: 18px;
+}
+.pagination-lg > li:first-child > a,
+.pagination-lg > li:first-child > span {
+ border-top-left-radius: 6px;
+ border-bottom-left-radius: 6px;
+}
+.pagination-lg > li:last-child > a,
+.pagination-lg > li:last-child > span {
+ border-top-right-radius: 6px;
+ border-bottom-right-radius: 6px;
+}
+.pagination-sm > li > a,
+.pagination-sm > li > span {
+ padding: 5px 10px;
+ font-size: 12px;
+}
+.pagination-sm > li:first-child > a,
+.pagination-sm > li:first-child > span {
+ border-top-left-radius: 3px;
+ border-bottom-left-radius: 3px;
+}
+.pagination-sm > li:last-child > a,
+.pagination-sm > li:last-child > span {
+ border-top-right-radius: 3px;
+ border-bottom-right-radius: 3px;
+}
+.pager {
+ padding-left: 0;
+ margin: 20px 0;
+ text-align: center;
+ list-style: none;
+}
+.pager li {
+ display: inline;
+}
+.pager li > a,
+.pager li > span {
+ display: inline-block;
+ padding: 5px 14px;
+ background-color: #fff;
+ border: 1px solid #ddd;
+ border-radius: 15px;
+}
+.pager li > a:hover,
+.pager li > a:focus {
+ text-decoration: none;
+ background-color: #eee;
+}
+.pager .next > a,
+.pager .next > span {
+ float: right;
+}
+.pager .previous > a,
+.pager .previous > span {
+ float: left;
+}
+.pager .disabled > a,
+.pager .disabled > a:hover,
+.pager .disabled > a:focus,
+.pager .disabled > span {
+ color: #777;
+ cursor: not-allowed;
+ background-color: #fff;
+}
+.label {
+ display: inline;
+ padding: .2em .6em .3em;
+ font-size: 75%;
+ font-weight: bold;
+ line-height: 1;
+ color: #fff;
+ text-align: center;
+ white-space: nowrap;
+ vertical-align: baseline;
+ border-radius: .25em;
+}
+a.label:hover,
+a.label:focus {
+ color: #fff;
+ text-decoration: none;
+ cursor: pointer;
+}
+.label:empty {
+ display: none;
+}
+.btn .label {
+ position: relative;
+ top: -1px;
+}
+.label-default {
+ background-color: #777;
+}
+.label-default[href]:hover,
+.label-default[href]:focus {
+ background-color: #5e5e5e;
+}
+.label-primary {
+ background-color: #428bca;
+}
+.label-primary[href]:hover,
+.label-primary[href]:focus {
+ background-color: #3071a9;
+}
+.label-success {
+ background-color: #5cb85c;
+}
+.label-success[href]:hover,
+.label-success[href]:focus {
+ background-color: #449d44;
+}
+.label-info {
+ background-color: #5bc0de;
+}
+.label-info[href]:hover,
+.label-info[href]:focus {
+ background-color: #31b0d5;
+}
+.label-warning {
+ background-color: #f0ad4e;
+}
+.label-warning[href]:hover,
+.label-warning[href]:focus {
+ background-color: #ec971f;
+}
+.label-danger {
+ background-color: #d9534f;
+}
+.label-danger[href]:hover,
+.label-danger[href]:focus {
+ background-color: #c9302c;
+}
+.badge {
+ display: inline-block;
+ min-width: 10px;
+ padding: 3px 7px;
+ font-size: 12px;
+ font-weight: bold;
+ line-height: 1;
+ color: #fff;
+ text-align: center;
+ white-space: nowrap;
+ vertical-align: baseline;
+ background-color: #777;
+ border-radius: 10px;
+}
+.badge:empty {
+ display: none;
+}
+.btn .badge {
+ position: relative;
+ top: -1px;
+}
+.btn-xs .badge {
+ top: 0;
+ padding: 1px 5px;
+}
+a.badge:hover,
+a.badge:focus {
+ color: #fff;
+ text-decoration: none;
+ cursor: pointer;
+}
+a.list-group-item.active > .badge,
+.nav-pills > .active > a > .badge {
+ color: #428bca;
+ background-color: #fff;
+}
+.nav-pills > li > a > .badge {
+ margin-left: 3px;
+}
+.jumbotron {
+ padding: 30px;
+ margin-bottom: 30px;
+ color: inherit;
+ background-color: #eee;
+}
+.jumbotron h1,
+.jumbotron .h1 {
+ color: inherit;
+}
+.jumbotron p {
+ margin-bottom: 15px;
+ font-size: 21px;
+ font-weight: 200;
+}
+.jumbotron > hr {
+ border-top-color: #d5d5d5;
+}
+.container .jumbotron {
+ border-radius: 6px;
+}
+.jumbotron .container {
+ max-width: 100%;
+}
+@media screen and (min-width: 768px) {
+ .jumbotron {
+ padding-top: 48px;
+ padding-bottom: 48px;
+ }
+ .container .jumbotron {
+ padding-right: 60px;
+ padding-left: 60px;
+ }
+ .jumbotron h1,
+ .jumbotron .h1 {
+ font-size: 63px;
+ }
+}
+.thumbnail {
+ display: block;
+ padding: 4px;
+ margin-bottom: 20px;
+ line-height: 1.42857143;
+ background-color: #fff;
+ border: 1px solid #ddd;
+ border-radius: 4px;
+ -webkit-transition: all .2s ease-in-out;
+ -o-transition: all .2s ease-in-out;
+ transition: all .2s ease-in-out;
+}
+.thumbnail > img,
+.thumbnail a > img {
+ margin-right: auto;
+ margin-left: auto;
+}
+a.thumbnail:hover,
+a.thumbnail:focus,
+a.thumbnail.active {
+ border-color: #428bca;
+}
+.thumbnail .caption {
+ padding: 9px;
+ color: #333;
+}
+.alert {
+ padding: 15px;
+ margin-bottom: 20px;
+ border: 1px solid transparent;
+ border-radius: 4px;
+}
+.alert h4 {
+ margin-top: 0;
+ color: inherit;
+}
+.alert .alert-link {
+ font-weight: bold;
+}
+.alert > p,
+.alert > ul {
+ margin-bottom: 0;
+}
+.alert > p + p {
+ margin-top: 5px;
+}
+.alert-dismissable,
+.alert-dismissible {
+ padding-right: 35px;
+}
+.alert-dismissable .close,
+.alert-dismissible .close {
+ position: relative;
+ top: -2px;
+ right: -21px;
+ color: inherit;
+}
+.alert-success {
+ color: #3c763d;
+ background-color: #dff0d8;
+ border-color: #d6e9c6;
+}
+.alert-success hr {
+ border-top-color: #c9e2b3;
+}
+.alert-success .alert-link {
+ color: #2b542c;
+}
+.alert-info {
+ color: #31708f;
+ background-color: #d9edf7;
+ border-color: #bce8f1;
+}
+.alert-info hr {
+ border-top-color: #a6e1ec;
+}
+.alert-info .alert-link {
+ color: #245269;
+}
+.alert-warning {
+ color: #8a6d3b;
+ background-color: #fcf8e3;
+ border-color: #faebcc;
+}
+.alert-warning hr {
+ border-top-color: #f7e1b5;
+}
+.alert-warning .alert-link {
+ color: #66512c;
+}
+.alert-danger {
+ color: #a94442;
+ background-color: #f2dede;
+ border-color: #ebccd1;
+}
+.alert-danger hr {
+ border-top-color: #e4b9c0;
+}
+.alert-danger .alert-link {
+ color: #843534;
+}
+@-webkit-keyframes progress-bar-stripes {
+ from {
+ background-position: 40px 0;
+ }
+ to {
+ background-position: 0 0;
+ }
+}
+@-o-keyframes progress-bar-stripes {
+ from {
+ background-position: 40px 0;
+ }
+ to {
+ background-position: 0 0;
+ }
+}
+@keyframes progress-bar-stripes {
+ from {
+ background-position: 40px 0;
+ }
+ to {
+ background-position: 0 0;
+ }
+}
+.progress {
+ height: 20px;
+ margin-bottom: 20px;
+ overflow: hidden;
+ background-color: #f5f5f5;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1);
+ box-shadow: inset 0 1px 2px rgba(0, 0, 0, .1);
+}
+.progress-bar {
+ float: left;
+ width: 0;
+ height: 100%;
+ font-size: 12px;
+ line-height: 20px;
+ color: #fff;
+ text-align: center;
+ background-color: #428bca;
+ -webkit-box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .15);
+ box-shadow: inset 0 -1px 0 rgba(0, 0, 0, .15);
+ -webkit-transition: width .6s ease;
+ -o-transition: width .6s ease;
+ transition: width .6s ease;
+}
+.progress-striped .progress-bar,
+.progress-bar-striped {
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ -webkit-background-size: 40px 40px;
+ background-size: 40px 40px;
+}
+.progress.active .progress-bar,
+.progress-bar.active {
+ -webkit-animation: progress-bar-stripes 2s linear infinite;
+ -o-animation: progress-bar-stripes 2s linear infinite;
+ animation: progress-bar-stripes 2s linear infinite;
+}
+.progress-bar[aria-valuenow="1"],
+.progress-bar[aria-valuenow="2"] {
+ min-width: 30px;
+}
+.progress-bar[aria-valuenow="0"] {
+ min-width: 30px;
+ color: #777;
+ background-color: transparent;
+ background-image: none;
+ -webkit-box-shadow: none;
+ box-shadow: none;
+}
+.progress-bar-success {
+ background-color: #5cb85c;
+}
+.progress-striped .progress-bar-success {
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+.progress-bar-info {
+ background-color: #5bc0de;
+}
+.progress-striped .progress-bar-info {
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+.progress-bar-warning {
+ background-color: #f0ad4e;
+}
+.progress-striped .progress-bar-warning {
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+.progress-bar-danger {
+ background-color: #d9534f;
+}
+.progress-striped .progress-bar-danger {
+ background-image: -webkit-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: -o-linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+ background-image: linear-gradient(45deg, rgba(255, 255, 255, .15) 25%, transparent 25%, transparent 50%, rgba(255, 255, 255, .15) 50%, rgba(255, 255, 255, .15) 75%, transparent 75%, transparent);
+}
+.media,
+.media-body {
+ overflow: hidden;
+ zoom: 1;
+}
+.media,
+.media .media {
+ margin-top: 15px;
+}
+.media:first-child {
+ margin-top: 0;
+}
+.media-object {
+ display: block;
+}
+.media-heading {
+ margin: 0 0 5px;
+}
+.media > .pull-left {
+ margin-right: 10px;
+}
+.media > .pull-right {
+ margin-left: 10px;
+}
+.media-list {
+ padding-left: 0;
+ list-style: none;
+}
+.list-group {
+ padding-left: 0;
+ margin-bottom: 20px;
+}
+.list-group-item {
+ position: relative;
+ display: block;
+ padding: 10px 15px;
+ margin-bottom: -1px;
+ background-color: #fff;
+ border: 1px solid #ddd;
+}
+.list-group-item:first-child {
+ border-top-left-radius: 4px;
+ border-top-right-radius: 4px;
+}
+.list-group-item:last-child {
+ margin-bottom: 0;
+ border-bottom-right-radius: 4px;
+ border-bottom-left-radius: 4px;
+}
+.list-group-item > .badge {
+ float: right;
+}
+.list-group-item > .badge + .badge {
+ margin-right: 5px;
+}
+a.list-group-item {
+ color: #555;
+}
+a.list-group-item .list-group-item-heading {
+ color: #333;
+}
+a.list-group-item:hover,
+a.list-group-item:focus {
+ color: #555;
+ text-decoration: none;
+ background-color: #f5f5f5;
+}
+.list-group-item.disabled,
+.list-group-item.disabled:hover,
+.list-group-item.disabled:focus {
+ color: #777;
+ background-color: #eee;
+}
+.list-group-item.disabled .list-group-item-heading,
+.list-group-item.disabled:hover .list-group-item-heading,
+.list-group-item.disabled:focus .list-group-item-heading {
+ color: inherit;
+}
+.list-group-item.disabled .list-group-item-text,
+.list-group-item.disabled:hover .list-group-item-text,
+.list-group-item.disabled:focus .list-group-item-text {
+ color: #777;
+}
+.list-group-item.active,
+.list-group-item.active:hover,
+.list-group-item.active:focus {
+ z-index: 2;
+ color: #fff;
+ background-color: #428bca;
+ border-color: #428bca;
+}
+.list-group-item.active .list-group-item-heading,
+.list-group-item.active:hover .list-group-item-heading,
+.list-group-item.active:focus .list-group-item-heading,
+.list-group-item.active .list-group-item-heading > small,
+.list-group-item.active:hover .list-group-item-heading > small,
+.list-group-item.active:focus .list-group-item-heading > small,
+.list-group-item.active .list-group-item-heading > .small,
+.list-group-item.active:hover .list-group-item-heading > .small,
+.list-group-item.active:focus .list-group-item-heading > .small {
+ color: inherit;
+}
+.list-group-item.active .list-group-item-text,
+.list-group-item.active:hover .list-group-item-text,
+.list-group-item.active:focus .list-group-item-text {
+ color: #e1edf7;
+}
+.list-group-item-success {
+ color: #3c763d;
+ background-color: #dff0d8;
+}
+a.list-group-item-success {
+ color: #3c763d;
+}
+a.list-group-item-success .list-group-item-heading {
+ color: inherit;
+}
+a.list-group-item-success:hover,
+a.list-group-item-success:focus {
+ color: #3c763d;
+ background-color: #d0e9c6;
+}
+a.list-group-item-success.active,
+a.list-group-item-success.active:hover,
+a.list-group-item-success.active:focus {
+ color: #fff;
+ background-color: #3c763d;
+ border-color: #3c763d;
+}
+.list-group-item-info {
+ color: #31708f;
+ background-color: #d9edf7;
+}
+a.list-group-item-info {
+ color: #31708f;
+}
+a.list-group-item-info .list-group-item-heading {
+ color: inherit;
+}
+a.list-group-item-info:hover,
+a.list-group-item-info:focus {
+ color: #31708f;
+ background-color: #c4e3f3;
+}
+a.list-group-item-info.active,
+a.list-group-item-info.active:hover,
+a.list-group-item-info.active:focus {
+ color: #fff;
+ background-color: #31708f;
+ border-color: #31708f;
+}
+.list-group-item-warning {
+ color: #8a6d3b;
+ background-color: #fcf8e3;
+}
+a.list-group-item-warning {
+ color: #8a6d3b;
+}
+a.list-group-item-warning .list-group-item-heading {
+ color: inherit;
+}
+a.list-group-item-warning:hover,
+a.list-group-item-warning:focus {
+ color: #8a6d3b;
+ background-color: #faf2cc;
+}
+a.list-group-item-warning.active,
+a.list-group-item-warning.active:hover,
+a.list-group-item-warning.active:focus {
+ color: #fff;
+ background-color: #8a6d3b;
+ border-color: #8a6d3b;
+}
+.list-group-item-danger {
+ color: #a94442;
+ background-color: #f2dede;
+}
+a.list-group-item-danger {
+ color: #a94442;
+}
+a.list-group-item-danger .list-group-item-heading {
+ color: inherit;
+}
+a.list-group-item-danger:hover,
+a.list-group-item-danger:focus {
+ color: #a94442;
+ background-color: #ebcccc;
+}
+a.list-group-item-danger.active,
+a.list-group-item-danger.active:hover,
+a.list-group-item-danger.active:focus {
+ color: #fff;
+ background-color: #a94442;
+ border-color: #a94442;
+}
+.list-group-item-heading {
+ margin-top: 0;
+ margin-bottom: 5px;
+}
+.list-group-item-text {
+ margin-bottom: 0;
+ line-height: 1.3;
+}
+.panel {
+ margin-bottom: 20px;
+ background-color: #fff;
+ border: 1px solid transparent;
+ border-radius: 4px;
+ -webkit-box-shadow: 0 1px 1px rgba(0, 0, 0, .05);
+ box-shadow: 0 1px 1px rgba(0, 0, 0, .05);
+}
+.panel-body {
+ padding: 15px;
+}
+.panel-heading {
+ padding: 10px 15px;
+ border-bottom: 1px solid transparent;
+ border-top-left-radius: 3px;
+ border-top-right-radius: 3px;
+}
+.panel-heading > .dropdown .dropdown-toggle {
+ color: inherit;
+}
+.panel-title {
+ margin-top: 0;
+ margin-bottom: 0;
+ font-size: 16px;
+ color: inherit;
+}
+.panel-title > a {
+ color: inherit;
+}
+.panel-footer {
+ padding: 10px 15px;
+ background-color: #f5f5f5;
+ border-top: 1px solid #ddd;
+ border-bottom-right-radius: 3px;
+ border-bottom-left-radius: 3px;
+}
+.panel > .list-group {
+ margin-bottom: 0;
+}
+.panel > .list-group .list-group-item {
+ border-width: 1px 0;
+ border-radius: 0;
+}
+.panel > .list-group:first-child .list-group-item:first-child {
+ border-top: 0;
+ border-top-left-radius: 3px;
+ border-top-right-radius: 3px;
+}
+.panel > .list-group:last-child .list-group-item:last-child {
+ border-bottom: 0;
+ border-bottom-right-radius: 3px;
+ border-bottom-left-radius: 3px;
+}
+.panel-heading + .list-group .list-group-item:first-child {
+ border-top-width: 0;
+}
+.list-group + .panel-footer {
+ border-top-width: 0;
+}
+.panel > .table,
+.panel > .table-responsive > .table,
+.panel > .panel-collapse > .table {
+ margin-bottom: 0;
+}
+.panel > .table:first-child,
+.panel > .table-responsive:first-child > .table:first-child {
+ border-top-left-radius: 3px;
+ border-top-right-radius: 3px;
+}
+.panel > .table:first-child > thead:first-child > tr:first-child td:first-child,
+.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child td:first-child,
+.panel > .table:first-child > tbody:first-child > tr:first-child td:first-child,
+.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child td:first-child,
+.panel > .table:first-child > thead:first-child > tr:first-child th:first-child,
+.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child th:first-child,
+.panel > .table:first-child > tbody:first-child > tr:first-child th:first-child,
+.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child th:first-child {
+ border-top-left-radius: 3px;
+}
+.panel > .table:first-child > thead:first-child > tr:first-child td:last-child,
+.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child td:last-child,
+.panel > .table:first-child > tbody:first-child > tr:first-child td:last-child,
+.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child td:last-child,
+.panel > .table:first-child > thead:first-child > tr:first-child th:last-child,
+.panel > .table-responsive:first-child > .table:first-child > thead:first-child > tr:first-child th:last-child,
+.panel > .table:first-child > tbody:first-child > tr:first-child th:last-child,
+.panel > .table-responsive:first-child > .table:first-child > tbody:first-child > tr:first-child th:last-child {
+ border-top-right-radius: 3px;
+}
+.panel > .table:last-child,
+.panel > .table-responsive:last-child > .table:last-child {
+ border-bottom-right-radius: 3px;
+ border-bottom-left-radius: 3px;
+}
+.panel > .table:last-child > tbody:last-child > tr:last-child td:first-child,
+.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child td:first-child,
+.panel > .table:last-child > tfoot:last-child > tr:last-child td:first-child,
+.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child td:first-child,
+.panel > .table:last-child > tbody:last-child > tr:last-child th:first-child,
+.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child th:first-child,
+.panel > .table:last-child > tfoot:last-child > tr:last-child th:first-child,
+.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child th:first-child {
+ border-bottom-left-radius: 3px;
+}
+.panel > .table:last-child > tbody:last-child > tr:last-child td:last-child,
+.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child td:last-child,
+.panel > .table:last-child > tfoot:last-child > tr:last-child td:last-child,
+.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child td:last-child,
+.panel > .table:last-child > tbody:last-child > tr:last-child th:last-child,
+.panel > .table-responsive:last-child > .table:last-child > tbody:last-child > tr:last-child th:last-child,
+.panel > .table:last-child > tfoot:last-child > tr:last-child th:last-child,
+.panel > .table-responsive:last-child > .table:last-child > tfoot:last-child > tr:last-child th:last-child {
+ border-bottom-right-radius: 3px;
+}
+.panel > .panel-body + .table,
+.panel > .panel-body + .table-responsive {
+ border-top: 1px solid #ddd;
+}
+.panel > .table > tbody:first-child > tr:first-child th,
+.panel > .table > tbody:first-child > tr:first-child td {
+ border-top: 0;
+}
+.panel > .table-bordered,
+.panel > .table-responsive > .table-bordered {
+ border: 0;
+}
+.panel > .table-bordered > thead > tr > th:first-child,
+.panel > .table-responsive > .table-bordered > thead > tr > th:first-child,
+.panel > .table-bordered > tbody > tr > th:first-child,
+.panel > .table-responsive > .table-bordered > tbody > tr > th:first-child,
+.panel > .table-bordered > tfoot > tr > th:first-child,
+.panel > .table-responsive > .table-bordered > tfoot > tr > th:first-child,
+.panel > .table-bordered > thead > tr > td:first-child,
+.panel > .table-responsive > .table-bordered > thead > tr > td:first-child,
+.panel > .table-bordered > tbody > tr > td:first-child,
+.panel > .table-responsive > .table-bordered > tbody > tr > td:first-child,
+.panel > .table-bordered > tfoot > tr > td:first-child,
+.panel > .table-responsive > .table-bordered > tfoot > tr > td:first-child {
+ border-left: 0;
+}
+.panel > .table-bordered > thead > tr > th:last-child,
+.panel > .table-responsive > .table-bordered > thead > tr > th:last-child,
+.panel > .table-bordered > tbody > tr > th:last-child,
+.panel > .table-responsive > .table-bordered > tbody > tr > th:last-child,
+.panel > .table-bordered > tfoot > tr > th:last-child,
+.panel > .table-responsive > .table-bordered > tfoot > tr > th:last-child,
+.panel > .table-bordered > thead > tr > td:last-child,
+.panel > .table-responsive > .table-bordered > thead > tr > td:last-child,
+.panel > .table-bordered > tbody > tr > td:last-child,
+.panel > .table-responsive > .table-bordered > tbody > tr > td:last-child,
+.panel > .table-bordered > tfoot > tr > td:last-child,
+.panel > .table-responsive > .table-bordered > tfoot > tr > td:last-child {
+ border-right: 0;
+}
+.panel > .table-bordered > thead > tr:first-child > td,
+.panel > .table-responsive > .table-bordered > thead > tr:first-child > td,
+.panel > .table-bordered > tbody > tr:first-child > td,
+.panel > .table-responsive > .table-bordered > tbody > tr:first-child > td,
+.panel > .table-bordered > thead > tr:first-child > th,
+.panel > .table-responsive > .table-bordered > thead > tr:first-child > th,
+.panel > .table-bordered > tbody > tr:first-child > th,
+.panel > .table-responsive > .table-bordered > tbody > tr:first-child > th {
+ border-bottom: 0;
+}
+.panel > .table-bordered > tbody > tr:last-child > td,
+.panel > .table-responsive > .table-bordered > tbody > tr:last-child > td,
+.panel > .table-bordered > tfoot > tr:last-child > td,
+.panel > .table-responsive > .table-bordered > tfoot > tr:last-child > td,
+.panel > .table-bordered > tbody > tr:last-child > th,
+.panel > .table-responsive > .table-bordered > tbody > tr:last-child > th,
+.panel > .table-bordered > tfoot > tr:last-child > th,
+.panel > .table-responsive > .table-bordered > tfoot > tr:last-child > th {
+ border-bottom: 0;
+}
+.panel > .table-responsive {
+ margin-bottom: 0;
+ border: 0;
+}
+.panel-group {
+ margin-bottom: 20px;
+}
+.panel-group .panel {
+ margin-bottom: 0;
+ border-radius: 4px;
+}
+.panel-group .panel + .panel {
+ margin-top: 5px;
+}
+.panel-group .panel-heading {
+ border-bottom: 0;
+}
+.panel-group .panel-heading + .panel-collapse > .panel-body {
+ border-top: 1px solid #ddd;
+}
+.panel-group .panel-footer {
+ border-top: 0;
+}
+.panel-group .panel-footer + .panel-collapse .panel-body {
+ border-bottom: 1px solid #ddd;
+}
+.panel-default {
+ border-color: #ddd;
+}
+.panel-default > .panel-heading {
+ color: #333;
+ background-color: #f5f5f5;
+ border-color: #ddd;
+}
+.panel-default > .panel-heading + .panel-collapse > .panel-body {
+ border-top-color: #ddd;
+}
+.panel-default > .panel-heading .badge {
+ color: #f5f5f5;
+ background-color: #333;
+}
+.panel-default > .panel-footer + .panel-collapse > .panel-body {
+ border-bottom-color: #ddd;
+}
+.panel-primary {
+ border-color: #428bca;
+}
+.panel-primary > .panel-heading {
+ color: #fff;
+ background-color: #428bca;
+ border-color: #428bca;
+}
+.panel-primary > .panel-heading + .panel-collapse > .panel-body {
+ border-top-color: #428bca;
+}
+.panel-primary > .panel-heading .badge {
+ color: #428bca;
+ background-color: #fff;
+}
+.panel-primary > .panel-footer + .panel-collapse > .panel-body {
+ border-bottom-color: #428bca;
+}
+.panel-success {
+ border-color: #d6e9c6;
+}
+.panel-success > .panel-heading {
+ color: #3c763d;
+ background-color: #dff0d8;
+ border-color: #d6e9c6;
+}
+.panel-success > .panel-heading + .panel-collapse > .panel-body {
+ border-top-color: #d6e9c6;
+}
+.panel-success > .panel-heading .badge {
+ color: #dff0d8;
+ background-color: #3c763d;
+}
+.panel-success > .panel-footer + .panel-collapse > .panel-body {
+ border-bottom-color: #d6e9c6;
+}
+.panel-info {
+ border-color: #bce8f1;
+}
+.panel-info > .panel-heading {
+ color: #31708f;
+ background-color: #d9edf7;
+ border-color: #bce8f1;
+}
+.panel-info > .panel-heading + .panel-collapse > .panel-body {
+ border-top-color: #bce8f1;
+}
+.panel-info > .panel-heading .badge {
+ color: #d9edf7;
+ background-color: #31708f;
+}
+.panel-info > .panel-footer + .panel-collapse > .panel-body {
+ border-bottom-color: #bce8f1;
+}
+.panel-warning {
+ border-color: #faebcc;
+}
+.panel-warning > .panel-heading {
+ color: #8a6d3b;
+ background-color: #fcf8e3;
+ border-color: #faebcc;
+}
+.panel-warning > .panel-heading + .panel-collapse > .panel-body {
+ border-top-color: #faebcc;
+}
+.panel-warning > .panel-heading .badge {
+ color: #fcf8e3;
+ background-color: #8a6d3b;
+}
+.panel-warning > .panel-footer + .panel-collapse > .panel-body {
+ border-bottom-color: #faebcc;
+}
+.panel-danger {
+ border-color: #ebccd1;
+}
+.panel-danger > .panel-heading {
+ color: #a94442;
+ background-color: #f2dede;
+ border-color: #ebccd1;
+}
+.panel-danger > .panel-heading + .panel-collapse > .panel-body {
+ border-top-color: #ebccd1;
+}
+.panel-danger > .panel-heading .badge {
+ color: #f2dede;
+ background-color: #a94442;
+}
+.panel-danger > .panel-footer + .panel-collapse > .panel-body {
+ border-bottom-color: #ebccd1;
+}
+.embed-responsive {
+ position: relative;
+ display: block;
+ height: 0;
+ padding: 0;
+ overflow: hidden;
+}
+.embed-responsive .embed-responsive-item,
+.embed-responsive iframe,
+.embed-responsive embed,
+.embed-responsive object {
+ position: absolute;
+ top: 0;
+ bottom: 0;
+ left: 0;
+ width: 100%;
+ height: 100%;
+ border: 0;
+}
+.embed-responsive.embed-responsive-16by9 {
+ padding-bottom: 56.25%;
+}
+.embed-responsive.embed-responsive-4by3 {
+ padding-bottom: 75%;
+}
+.well {
+ min-height: 20px;
+ padding: 19px;
+ margin-bottom: 20px;
+ background-color: #f5f5f5;
+ border: 1px solid #e3e3e3;
+ border-radius: 4px;
+ -webkit-box-shadow: inset 0 1px 1px rgba(0, 0, 0, .05);
+ box-shadow: inset 0 1px 1px rgba(0, 0, 0, .05);
+}
+.well blockquote {
+ border-color: #ddd;
+ border-color: rgba(0, 0, 0, .15);
+}
+.well-lg {
+ padding: 24px;
+ border-radius: 6px;
+}
+.well-sm {
+ padding: 9px;
+ border-radius: 3px;
+}
+.close {
+ float: right;
+ font-size: 21px;
+ font-weight: bold;
+ line-height: 1;
+ color: #000;
+ text-shadow: 0 1px 0 #fff;
+ filter: alpha(opacity=20);
+ opacity: .2;
+}
+.close:hover,
+.close:focus {
+ color: #000;
+ text-decoration: none;
+ cursor: pointer;
+ filter: alpha(opacity=50);
+ opacity: .5;
+}
+button.close {
+ -webkit-appearance: none;
+ padding: 0;
+ cursor: pointer;
+ background: transparent;
+ border: 0;
+}
+.modal-open {
+ overflow: hidden;
+}
+.modal {
+ position: fixed;
+ top: 0;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ z-index: 1050;
+ display: none;
+ overflow: hidden;
+ -webkit-overflow-scrolling: touch;
+ outline: 0;
+}
+.modal.fade .modal-dialog {
+ -webkit-transition: -webkit-transform .3s ease-out;
+ -o-transition: -o-transform .3s ease-out;
+ transition: transform .3s ease-out;
+ -webkit-transform: translate3d(0, -25%, 0);
+ -o-transform: translate3d(0, -25%, 0);
+ transform: translate3d(0, -25%, 0);
+}
+.modal.in .modal-dialog {
+ -webkit-transform: translate3d(0, 0, 0);
+ -o-transform: translate3d(0, 0, 0);
+ transform: translate3d(0, 0, 0);
+}
+.modal-open .modal {
+ overflow-x: hidden;
+ overflow-y: auto;
+}
+.modal-dialog {
+ position: relative;
+ width: auto;
+ margin: 10px;
+}
+.modal-content {
+ position: relative;
+ background-color: #fff;
+ -webkit-background-clip: padding-box;
+ background-clip: padding-box;
+ border: 1px solid #999;
+ border: 1px solid rgba(0, 0, 0, .2);
+ border-radius: 6px;
+ outline: 0;
+ -webkit-box-shadow: 0 3px 9px rgba(0, 0, 0, .5);
+ box-shadow: 0 3px 9px rgba(0, 0, 0, .5);
+}
+.modal-backdrop {
+ position: fixed;
+ top: 0;
+ right: 0;
+ bottom: 0;
+ left: 0;
+ z-index: 1040;
+ background-color: #000;
+}
+.modal-backdrop.fade {
+ filter: alpha(opacity=0);
+ opacity: 0;
+}
+.modal-backdrop.in {
+ filter: alpha(opacity=50);
+ opacity: .5;
+}
+.modal-header {
+ min-height: 16.42857143px;
+ padding: 15px;
+ border-bottom: 1px solid #e5e5e5;
+}
+.modal-header .close {
+ margin-top: -2px;
+}
+.modal-title {
+ margin: 0;
+ line-height: 1.42857143;
+}
+.modal-body {
+ position: relative;
+ padding: 15px;
+}
+.modal-footer {
+ padding: 15px;
+ text-align: right;
+ border-top: 1px solid #e5e5e5;
+}
+.modal-footer .btn + .btn {
+ margin-bottom: 0;
+ margin-left: 5px;
+}
+.modal-footer .btn-group .btn + .btn {
+ margin-left: -1px;
+}
+.modal-footer .btn-block + .btn-block {
+ margin-left: 0;
+}
+.modal-scrollbar-measure {
+ position: absolute;
+ top: -9999px;
+ width: 50px;
+ height: 50px;
+ overflow: scroll;
+}
+@media (min-width: 768px) {
+ .modal-dialog {
+ width: 600px;
+ margin: 30px auto;
+ }
+ .modal-content {
+ -webkit-box-shadow: 0 5px 15px rgba(0, 0, 0, .5);
+ box-shadow: 0 5px 15px rgba(0, 0, 0, .5);
+ }
+ .modal-sm {
+ width: 300px;
+ }
+}
+@media (min-width: 992px) {
+ .modal-lg {
+ width: 900px;
+ }
+}
+.tooltip {
+ position: absolute;
+ z-index: 1070;
+ display: block;
+ font-size: 12px;
+ line-height: 1.4;
+ visibility: visible;
+ filter: alpha(opacity=0);
+ opacity: 0;
+}
+.tooltip.in {
+ filter: alpha(opacity=90);
+ opacity: .9;
+}
+.tooltip.top {
+ padding: 5px 0;
+ margin-top: -3px;
+}
+.tooltip.right {
+ padding: 0 5px;
+ margin-left: 3px;
+}
+.tooltip.bottom {
+ padding: 5px 0;
+ margin-top: 3px;
+}
+.tooltip.left {
+ padding: 0 5px;
+ margin-left: -3px;
+}
+.tooltip-inner {
+ max-width: 200px;
+ padding: 3px 8px;
+ color: #fff;
+ text-align: center;
+ text-decoration: none;
+ background-color: #000;
+ border-radius: 4px;
+}
+.tooltip-arrow {
+ position: absolute;
+ width: 0;
+ height: 0;
+ border-color: transparent;
+ border-style: solid;
+}
+.tooltip.top .tooltip-arrow {
+ bottom: 0;
+ left: 50%;
+ margin-left: -5px;
+ border-width: 5px 5px 0;
+ border-top-color: #000;
+}
+.tooltip.top-left .tooltip-arrow {
+ bottom: 0;
+ left: 5px;
+ border-width: 5px 5px 0;
+ border-top-color: #000;
+}
+.tooltip.top-right .tooltip-arrow {
+ right: 5px;
+ bottom: 0;
+ border-width: 5px 5px 0;
+ border-top-color: #000;
+}
+.tooltip.right .tooltip-arrow {
+ top: 50%;
+ left: 0;
+ margin-top: -5px;
+ border-width: 5px 5px 5px 0;
+ border-right-color: #000;
+}
+.tooltip.left .tooltip-arrow {
+ top: 50%;
+ right: 0;
+ margin-top: -5px;
+ border-width: 5px 0 5px 5px;
+ border-left-color: #000;
+}
+.tooltip.bottom .tooltip-arrow {
+ top: 0;
+ left: 50%;
+ margin-left: -5px;
+ border-width: 0 5px 5px;
+ border-bottom-color: #000;
+}
+.tooltip.bottom-left .tooltip-arrow {
+ top: 0;
+ left: 5px;
+ border-width: 0 5px 5px;
+ border-bottom-color: #000;
+}
+.tooltip.bottom-right .tooltip-arrow {
+ top: 0;
+ right: 5px;
+ border-width: 0 5px 5px;
+ border-bottom-color: #000;
+}
+.popover {
+ position: absolute;
+ top: 0;
+ left: 0;
+ z-index: 1060;
+ display: none;
+ max-width: 276px;
+ padding: 1px;
+ text-align: left;
+ white-space: normal;
+ background-color: #fff;
+ -webkit-background-clip: padding-box;
+ background-clip: padding-box;
+ border: 1px solid #ccc;
+ border: 1px solid rgba(0, 0, 0, .2);
+ border-radius: 6px;
+ -webkit-box-shadow: 0 5px 10px rgba(0, 0, 0, .2);
+ box-shadow: 0 5px 10px rgba(0, 0, 0, .2);
+}
+.popover.top {
+ margin-top: -10px;
+}
+.popover.right {
+ margin-left: 10px;
+}
+.popover.bottom {
+ margin-top: 10px;
+}
+.popover.left {
+ margin-left: -10px;
+}
+.popover-title {
+ padding: 8px 14px;
+ margin: 0;
+ font-size: 14px;
+ font-weight: normal;
+ line-height: 18px;
+ background-color: #f7f7f7;
+ border-bottom: 1px solid #ebebeb;
+ border-radius: 5px 5px 0 0;
+}
+.popover-content {
+ padding: 9px 14px;
+}
+.popover > .arrow,
+.popover > .arrow:after {
+ position: absolute;
+ display: block;
+ width: 0;
+ height: 0;
+ border-color: transparent;
+ border-style: solid;
+}
+.popover > .arrow {
+ border-width: 11px;
+}
+.popover > .arrow:after {
+ content: "";
+ border-width: 10px;
+}
+.popover.top > .arrow {
+ bottom: -11px;
+ left: 50%;
+ margin-left: -11px;
+ border-top-color: #999;
+ border-top-color: rgba(0, 0, 0, .25);
+ border-bottom-width: 0;
+}
+.popover.top > .arrow:after {
+ bottom: 1px;
+ margin-left: -10px;
+ content: " ";
+ border-top-color: #fff;
+ border-bottom-width: 0;
+}
+.popover.right > .arrow {
+ top: 50%;
+ left: -11px;
+ margin-top: -11px;
+ border-right-color: #999;
+ border-right-color: rgba(0, 0, 0, .25);
+ border-left-width: 0;
+}
+.popover.right > .arrow:after {
+ bottom: -10px;
+ left: 1px;
+ content: " ";
+ border-right-color: #fff;
+ border-left-width: 0;
+}
+.popover.bottom > .arrow {
+ top: -11px;
+ left: 50%;
+ margin-left: -11px;
+ border-top-width: 0;
+ border-bottom-color: #999;
+ border-bottom-color: rgba(0, 0, 0, .25);
+}
+.popover.bottom > .arrow:after {
+ top: 1px;
+ margin-left: -10px;
+ content: " ";
+ border-top-width: 0;
+ border-bottom-color: #fff;
+}
+.popover.left > .arrow {
+ top: 50%;
+ right: -11px;
+ margin-top: -11px;
+ border-right-width: 0;
+ border-left-color: #999;
+ border-left-color: rgba(0, 0, 0, .25);
+}
+.popover.left > .arrow:after {
+ right: 1px;
+ bottom: -10px;
+ content: " ";
+ border-right-width: 0;
+ border-left-color: #fff;
+}
+.carousel {
+ position: relative;
+}
+.carousel-inner {
+ position: relative;
+ width: 100%;
+ overflow: hidden;
+}
+.carousel-inner > .item {
+ position: relative;
+ display: none;
+ -webkit-transition: .6s ease-in-out left;
+ -o-transition: .6s ease-in-out left;
+ transition: .6s ease-in-out left;
+}
+.carousel-inner > .item > img,
+.carousel-inner > .item > a > img {
+ line-height: 1;
+}
+.carousel-inner > .active,
+.carousel-inner > .next,
+.carousel-inner > .prev {
+ display: block;
+}
+.carousel-inner > .active {
+ left: 0;
+}
+.carousel-inner > .next,
+.carousel-inner > .prev {
+ position: absolute;
+ top: 0;
+ width: 100%;
+}
+.carousel-inner > .next {
+ left: 100%;
+}
+.carousel-inner > .prev {
+ left: -100%;
+}
+.carousel-inner > .next.left,
+.carousel-inner > .prev.right {
+ left: 0;
+}
+.carousel-inner > .active.left {
+ left: -100%;
+}
+.carousel-inner > .active.right {
+ left: 100%;
+}
+.carousel-control {
+ position: absolute;
+ top: 0;
+ bottom: 0;
+ left: 0;
+ width: 15%;
+ font-size: 20px;
+ color: #fff;
+ text-align: center;
+ text-shadow: 0 1px 2px rgba(0, 0, 0, .6);
+ filter: alpha(opacity=50);
+ opacity: .5;
+}
+.carousel-control.left {
+ background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
+ background-image: -o-linear-gradient(left, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
+ background-image: -webkit-gradient(linear, left top, right top, from(rgba(0, 0, 0, .5)), to(rgba(0, 0, 0, .0001)));
+ background-image: linear-gradient(to right, rgba(0, 0, 0, .5) 0%, rgba(0, 0, 0, .0001) 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#80000000', endColorstr='#00000000', GradientType=1);
+ background-repeat: repeat-x;
+}
+.carousel-control.right {
+ right: 0;
+ left: auto;
+ background-image: -webkit-linear-gradient(left, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
+ background-image: -o-linear-gradient(left, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
+ background-image: -webkit-gradient(linear, left top, right top, from(rgba(0, 0, 0, .0001)), to(rgba(0, 0, 0, .5)));
+ background-image: linear-gradient(to right, rgba(0, 0, 0, .0001) 0%, rgba(0, 0, 0, .5) 100%);
+ filter: progid:DXImageTransform.Microsoft.gradient(startColorstr='#00000000', endColorstr='#80000000', GradientType=1);
+ background-repeat: repeat-x;
+}
+.carousel-control:hover,
+.carousel-control:focus {
+ color: #fff;
+ text-decoration: none;
+ filter: alpha(opacity=90);
+ outline: 0;
+ opacity: .9;
+}
+.carousel-control .icon-prev,
+.carousel-control .icon-next,
+.carousel-control .glyphicon-chevron-left,
+.carousel-control .glyphicon-chevron-right {
+ position: absolute;
+ top: 50%;
+ z-index: 5;
+ display: inline-block;
+}
+.carousel-control .icon-prev,
+.carousel-control .glyphicon-chevron-left {
+ left: 50%;
+ margin-left: -10px;
+}
+.carousel-control .icon-next,
+.carousel-control .glyphicon-chevron-right {
+ right: 50%;
+ margin-right: -10px;
+}
+.carousel-control .icon-prev,
+.carousel-control .icon-next {
+ width: 20px;
+ height: 20px;
+ margin-top: -10px;
+ font-family: serif;
+}
+.carousel-control .icon-prev:before {
+ content: '\2039';
+}
+.carousel-control .icon-next:before {
+ content: '\203a';
+}
+.carousel-indicators {
+ position: absolute;
+ bottom: 10px;
+ left: 50%;
+ z-index: 15;
+ width: 60%;
+ padding-left: 0;
+ margin-left: -30%;
+ text-align: center;
+ list-style: none;
+}
+.carousel-indicators li {
+ display: inline-block;
+ width: 10px;
+ height: 10px;
+ margin: 1px;
+ text-indent: -999px;
+ cursor: pointer;
+ background-color: #000 \9;
+ background-color: rgba(0, 0, 0, 0);
+ border: 1px solid #fff;
+ border-radius: 10px;
+}
+.carousel-indicators .active {
+ width: 12px;
+ height: 12px;
+ margin: 0;
+ background-color: #fff;
+}
+.carousel-caption {
+ position: absolute;
+ right: 15%;
+ bottom: 20px;
+ left: 15%;
+ z-index: 10;
+ padding-top: 20px;
+ padding-bottom: 20px;
+ color: #fff;
+ text-align: center;
+ text-shadow: 0 1px 2px rgba(0, 0, 0, .6);
+}
+.carousel-caption .btn {
+ text-shadow: none;
+}
+@media screen and (min-width: 768px) {
+ .carousel-control .glyphicon-chevron-left,
+ .carousel-control .glyphicon-chevron-right,
+ .carousel-control .icon-prev,
+ .carousel-control .icon-next {
+ width: 30px;
+ height: 30px;
+ margin-top: -15px;
+ font-size: 30px;
+ }
+ .carousel-control .glyphicon-chevron-left,
+ .carousel-control .icon-prev {
+ margin-left: -15px;
+ }
+ .carousel-control .glyphicon-chevron-right,
+ .carousel-control .icon-next {
+ margin-right: -15px;
+ }
+ .carousel-caption {
+ right: 20%;
+ left: 20%;
+ padding-bottom: 30px;
+ }
+ .carousel-indicators {
+ bottom: 20px;
+ }
+}
+.clearfix:before,
+.clearfix:after,
+.dl-horizontal dd:before,
+.dl-horizontal dd:after,
+.container:before,
+.container:after,
+.container-fluid:before,
+.container-fluid:after,
+.row:before,
+.row:after,
+.form-horizontal .form-group:before,
+.form-horizontal .form-group:after,
+.btn-toolbar:before,
+.btn-toolbar:after,
+.btn-group-vertical > .btn-group:before,
+.btn-group-vertical > .btn-group:after,
+.nav:before,
+.nav:after,
+.navbar:before,
+.navbar:after,
+.navbar-header:before,
+.navbar-header:after,
+.navbar-collapse:before,
+.navbar-collapse:after,
+.pager:before,
+.pager:after,
+.panel-body:before,
+.panel-body:after,
+.modal-footer:before,
+.modal-footer:after {
+ display: table;
+ content: " ";
+}
+.clearfix:after,
+.dl-horizontal dd:after,
+.container:after,
+.container-fluid:after,
+.row:after,
+.form-horizontal .form-group:after,
+.btn-toolbar:after,
+.btn-group-vertical > .btn-group:after,
+.nav:after,
+.navbar:after,
+.navbar-header:after,
+.navbar-collapse:after,
+.pager:after,
+.panel-body:after,
+.modal-footer:after {
+ clear: both;
+}
+.center-block {
+ display: block;
+ margin-right: auto;
+ margin-left: auto;
+}
+.pull-right {
+ float: right !important;
+}
+.pull-left {
+ float: left !important;
+}
+.hide {
+ display: none !important;
+}
+.show {
+ display: block !important;
+}
+.invisible {
+ visibility: hidden;
+}
+.text-hide {
+ font: 0/0 a;
+ color: transparent;
+ text-shadow: none;
+ background-color: transparent;
+ border: 0;
+}
+.hidden {
+ display: none !important;
+ visibility: hidden !important;
+}
+.affix {
+ position: fixed;
+ -webkit-transform: translate3d(0, 0, 0);
+ -o-transform: translate3d(0, 0, 0);
+ transform: translate3d(0, 0, 0);
+}
+@-ms-viewport {
+ width: device-width;
+}
+.visible-xs,
+.visible-sm,
+.visible-md,
+.visible-lg {
+ display: none !important;
+}
+.visible-xs-block,
+.visible-xs-inline,
+.visible-xs-inline-block,
+.visible-sm-block,
+.visible-sm-inline,
+.visible-sm-inline-block,
+.visible-md-block,
+.visible-md-inline,
+.visible-md-inline-block,
+.visible-lg-block,
+.visible-lg-inline,
+.visible-lg-inline-block {
+ display: none !important;
+}
+@media (max-width: 767px) {
+ .visible-xs {
+ display: block !important;
+ }
+ table.visible-xs {
+ display: table;
+ }
+ tr.visible-xs {
+ display: table-row !important;
+ }
+ th.visible-xs,
+ td.visible-xs {
+ display: table-cell !important;
+ }
+}
+@media (max-width: 767px) {
+ .visible-xs-block {
+ display: block !important;
+ }
+}
+@media (max-width: 767px) {
+ .visible-xs-inline {
+ display: inline !important;
+ }
+}
+@media (max-width: 767px) {
+ .visible-xs-inline-block {
+ display: inline-block !important;
+ }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-sm {
+ display: block !important;
+ }
+ table.visible-sm {
+ display: table;
+ }
+ tr.visible-sm {
+ display: table-row !important;
+ }
+ th.visible-sm,
+ td.visible-sm {
+ display: table-cell !important;
+ }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-sm-block {
+ display: block !important;
+ }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-sm-inline {
+ display: inline !important;
+ }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+ .visible-sm-inline-block {
+ display: inline-block !important;
+ }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-md {
+ display: block !important;
+ }
+ table.visible-md {
+ display: table;
+ }
+ tr.visible-md {
+ display: table-row !important;
+ }
+ th.visible-md,
+ td.visible-md {
+ display: table-cell !important;
+ }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-md-block {
+ display: block !important;
+ }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-md-inline {
+ display: inline !important;
+ }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+ .visible-md-inline-block {
+ display: inline-block !important;
+ }
+}
+@media (min-width: 1200px) {
+ .visible-lg {
+ display: block !important;
+ }
+ table.visible-lg {
+ display: table;
+ }
+ tr.visible-lg {
+ display: table-row !important;
+ }
+ th.visible-lg,
+ td.visible-lg {
+ display: table-cell !important;
+ }
+}
+@media (min-width: 1200px) {
+ .visible-lg-block {
+ display: block !important;
+ }
+}
+@media (min-width: 1200px) {
+ .visible-lg-inline {
+ display: inline !important;
+ }
+}
+@media (min-width: 1200px) {
+ .visible-lg-inline-block {
+ display: inline-block !important;
+ }
+}
+@media (max-width: 767px) {
+ .hidden-xs {
+ display: none !important;
+ }
+}
+@media (min-width: 768px) and (max-width: 991px) {
+ .hidden-sm {
+ display: none !important;
+ }
+}
+@media (min-width: 992px) and (max-width: 1199px) {
+ .hidden-md {
+ display: none !important;
+ }
+}
+@media (min-width: 1200px) {
+ .hidden-lg {
+ display: none !important;
+ }
+}
+.visible-print {
+ display: none !important;
+}
+@media print {
+ .visible-print {
+ display: block !important;
+ }
+ table.visible-print {
+ display: table;
+ }
+ tr.visible-print {
+ display: table-row !important;
+ }
+ th.visible-print,
+ td.visible-print {
+ display: table-cell !important;
+ }
+}
+.visible-print-block {
+ display: none !important;
+}
+@media print {
+ .visible-print-block {
+ display: block !important;
+ }
+}
+.visible-print-inline {
+ display: none !important;
+}
+@media print {
+ .visible-print-inline {
+ display: inline !important;
+ }
+}
+.visible-print-inline-block {
+ display: none !important;
+}
+@media print {
+ .visible-print-inline-block {
+ display: inline-block !important;
+ }
+}
+@media print {
+ .hidden-print {
+ display: none !important;
+ }
+}
+/*# sourceMappingURL=bootstrap.css.map */
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css.map b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css.map
new file mode 100644
index 00000000000..bfb5616891b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.css.map
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normalize.css v3.0.1 | MIT License | git.io/normalize */\n\n//\n// 1. Set default font family to sans-serif.\n// 2. Prevent iOS text size adjust after orientation change, without disabling\n// user zoom.\n//\n\nhtml {\n font-family: sans-serif; // 1\n -ms-text-size-adjust: 100%; // 2\n -webkit-text-size-adjust: 100%; // 2\n}\n\n//\n// Remove default margin.\n//\n\nbody {\n margin: 0;\n}\n\n// HTML5 display definitions\n// ==========================================================================\n\n//\n// Correct `block` display not defined for any HTML5 element in IE 8/9.\n// Correct `block` display not defined for `details` or `summary` in IE 10/11 and Firefox.\n// Correct `block` display not defined for `main` in IE 11.\n//\n\narticle,\naside,\ndetails,\nfigcaption,\nfigure,\nfooter,\nheader,\nhgroup,\nmain,\nnav,\nsection,\nsummary {\n display: block;\n}\n\n//\n// 1. Correct `inline-block` display not defined in IE 8/9.\n// 2. Normalize vertical alignment of `progress` in Chrome, Firefox, and Opera.\n//\n\naudio,\ncanvas,\nprogress,\nvideo {\n display: inline-block; // 1\n vertical-align: baseline; // 2\n}\n\n//\n// Prevent modern browsers from displaying `audio` without controls.\n// Remove excess height in iOS 5 devices.\n//\n\naudio:not([controls]) {\n display: none;\n height: 0;\n}\n\n//\n// Address `[hidden]` styling not present in IE 8/9/10.\n// Hide the `template` element in IE 8/9/11, Safari, and Firefox < 22.\n//\n\n[hidden],\ntemplate {\n display: none;\n}\n\n// Links\n// ==========================================================================\n\n//\n// Remove the gray background color from active links in IE 10.\n//\n\na {\n background: transparent;\n}\n\n//\n// Improve readability when focused and also mouse hovered in all browsers.\n//\n\na:active,\na:hover {\n outline: 0;\n}\n\n// Text-level semantics\n// ==========================================================================\n\n//\n// Address styling not present in IE 8/9/10/11, Safari, and Chrome.\n//\n\nabbr[title] {\n border-bottom: 1px dotted;\n}\n\n//\n// Address style set to `bolder` in Firefox 4+, Safari, and Chrome.\n//\n\nb,\nstrong {\n font-weight: bold;\n}\n\n//\n// Address styling not present in Safari and Chrome.\n//\n\ndfn {\n font-style: italic;\n}\n\n//\n// Address variable `h1` font-size and margin within `section` and `article`\n// contexts in Firefox 4+, Safari, and Chrome.\n//\n\nh1 {\n font-size: 2em;\n margin: 0.67em 0;\n}\n\n//\n// Address styling not present in IE 8/9.\n//\n\nmark {\n background: #ff0;\n color: #000;\n}\n\n//\n// Address inconsistent and variable font size in all browsers.\n//\n\nsmall {\n font-size: 80%;\n}\n\n//\n// Prevent `sub` and `sup` affecting `line-height` in all browsers.\n//\n\nsub,\nsup {\n font-size: 75%;\n line-height: 0;\n position: relative;\n vertical-align: baseline;\n}\n\nsup {\n top: -0.5em;\n}\n\nsub {\n bottom: -0.25em;\n}\n\n// Embedded content\n// ==========================================================================\n\n//\n// Remove border when inside `a` element in IE 8/9/10.\n//\n\nimg {\n border: 0;\n}\n\n//\n// Correct overflow not hidden in IE 9/10/11.\n//\n\nsvg:not(:root) {\n overflow: hidden;\n}\n\n// Grouping content\n// ==========================================================================\n\n//\n// Address margin not present in IE 8/9 and Safari.\n//\n\nfigure {\n margin: 1em 40px;\n}\n\n//\n// Address differences between Firefox and other browsers.\n//\n\nhr {\n -moz-box-sizing: content-box;\n box-sizing: content-box;\n height: 0;\n}\n\n//\n// Contain overflow in all browsers.\n//\n\npre {\n overflow: auto;\n}\n\n//\n// Address odd `em`-unit font size rendering in all browsers.\n//\n\ncode,\nkbd,\npre,\nsamp {\n font-family: monospace, monospace;\n font-size: 1em;\n}\n\n// Forms\n// ==========================================================================\n\n//\n// Known limitation: by default, Chrome and Safari on OS X allow very limited\n// styling of `select`, unless a `border` property is set.\n//\n\n//\n// 1. Correct color not being inherited.\n// Known issue: affects color of disabled elements.\n// 2. Correct font properties not being inherited.\n// 3. Address margins set differently in Firefox 4+, Safari, and Chrome.\n//\n\nbutton,\ninput,\noptgroup,\nselect,\ntextarea {\n color: inherit; // 1\n font: inherit; // 2\n margin: 0; // 3\n}\n\n//\n// Address `overflow` set to `hidden` in IE 8/9/10/11.\n//\n\nbutton {\n overflow: visible;\n}\n\n//\n// Address inconsistent `text-transform` inheritance for `button` and `select`.\n// All other form control elements do not inherit `text-transform` values.\n// Correct `button` style inheritance in Firefox, IE 8/9/10/11, and Opera.\n// Correct `select` style inheritance in Firefox.\n//\n\nbutton,\nselect {\n text-transform: none;\n}\n\n//\n// 1. Avoid the WebKit bug in Android 4.0.* where (2) destroys native `audio`\n// and `video` controls.\n// 2. Correct inability to style clickable `input` types in iOS.\n// 3. Improve usability and consistency of cursor style between image-type\n// `input` and others.\n//\n\nbutton,\nhtml input[type=\"button\"], // 1\ninput[type=\"reset\"],\ninput[type=\"submit\"] {\n -webkit-appearance: button; // 2\n cursor: pointer; // 3\n}\n\n//\n// Re-set default cursor for disabled elements.\n//\n\nbutton[disabled],\nhtml input[disabled] {\n cursor: default;\n}\n\n//\n// Remove inner padding and border in Firefox 4+.\n//\n\nbutton::-moz-focus-inner,\ninput::-moz-focus-inner {\n border: 0;\n padding: 0;\n}\n\n//\n// Address Firefox 4+ setting `line-height` on `input` using `!important` in\n// the UA stylesheet.\n//\n\ninput {\n line-height: normal;\n}\n\n//\n// It's recommended that you don't attempt to style these elements.\n// Firefox's implementation doesn't respect box-sizing, padding, or width.\n//\n// 1. Address box sizing set to `content-box` in IE 8/9/10.\n// 2. Remove excess padding in IE 8/9/10.\n//\n\ninput[type=\"checkbox\"],\ninput[type=\"radio\"] {\n box-sizing: border-box; // 1\n padding: 0; // 2\n}\n\n//\n// Fix the cursor style for Chrome's increment/decrement buttons. For certain\n// `font-size` values of the `input`, it causes the cursor style of the\n// decrement button to change from `default` to `text`.\n//\n\ninput[type=\"number\"]::-webkit-inner-spin-button,\ninput[type=\"number\"]::-webkit-outer-spin-button {\n height: auto;\n}\n\n//\n// 1. Address `appearance` set to `searchfield` in Safari and Chrome.\n// 2. Address `box-sizing` set to `border-box` in Safari and Chrome\n// (include `-moz` to future-proof).\n//\n\ninput[type=\"search\"] {\n -webkit-appearance: textfield; // 1\n -moz-box-sizing: content-box;\n -webkit-box-sizing: content-box; // 2\n box-sizing: content-box;\n}\n\n//\n// Remove inner padding and search cancel button in Safari and Chrome on OS X.\n// Safari (but not Chrome) clips the cancel button when the search input has\n// padding (and `textfield` appearance).\n//\n\ninput[type=\"search\"]::-webkit-search-cancel-button,\ninput[type=\"search\"]::-webkit-search-decoration {\n -webkit-appearance: none;\n}\n\n//\n// Define consistent border, margin, and padding.\n//\n\nfieldset {\n border: 1px solid #c0c0c0;\n margin: 0 2px;\n padding: 0.35em 0.625em 0.75em;\n}\n\n//\n// 1. Correct `color` not being inherited in IE 8/9/10/11.\n// 2. Remove padding so people aren't caught out if they zero out fieldsets.\n//\n\nlegend {\n border: 0; // 1\n padding: 0; // 2\n}\n\n//\n// Remove default vertical scrollbar in IE 8/9/10/11.\n//\n\ntextarea {\n overflow: auto;\n}\n\n//\n// Don't inherit the `font-weight` (applied by a rule above).\n// NOTE: the default cannot safely be changed in Chrome and Safari on OS X.\n//\n\noptgroup {\n font-weight: bold;\n}\n\n// Tables\n// ==========================================================================\n\n//\n// Remove most spacing between table cells.\n//\n\ntable {\n border-collapse: collapse;\n border-spacing: 0;\n}\n\ntd,\nth {\n padding: 0;\n}\n","//\n// Basic print styles\n// --------------------------------------------------\n// Source: https://github.com/h5bp/html5-boilerplate/blob/master/css/main.css\n\n@media print {\n\n * {\n text-shadow: none !important;\n color: #000 !important; // Black prints faster: h5bp.com/s\n background: transparent !important;\n box-shadow: none !important;\n }\n\n a,\n a:visited {\n text-decoration: underline;\n }\n\n a[href]:after {\n content: \" (\" attr(href) \")\";\n }\n\n abbr[title]:after {\n content: \" (\" attr(title) \")\";\n }\n\n // Don't show links for images, or javascript/internal links\n a[href^=\"javascript:\"]:after,\n a[href^=\"#\"]:after {\n content: \"\";\n }\n\n pre,\n blockquote {\n border: 1px solid #999;\n page-break-inside: avoid;\n }\n\n thead {\n display: table-header-group; // h5bp.com/t\n }\n\n tr,\n img {\n page-break-inside: avoid;\n }\n\n img {\n max-width: 100% !important;\n }\n\n p,\n h2,\n h3 {\n orphans: 3;\n widows: 3;\n }\n\n h2,\n h3 {\n page-break-after: avoid;\n }\n\n // Chrome (OSX) fix for https://github.com/twbs/bootstrap/issues/11245\n // Once fixed, we can just straight up remove this.\n select {\n background: #fff !important;\n }\n\n // Bootstrap components\n .navbar {\n display: none;\n }\n .table {\n td,\n th {\n background-color: #fff !important;\n }\n }\n .btn,\n .dropup > .btn {\n > .caret {\n border-top-color: #000 !important;\n }\n }\n .label {\n border: 1px solid #000;\n }\n\n .table {\n border-collapse: collapse !important;\n }\n .table-bordered {\n th,\n td {\n border: 1px solid #ddd !important;\n }\n }\n\n}\n","//\n// Glyphicons for Bootstrap\n//\n// Since icons are fonts, they can be placed anywhere text is placed and are\n// thus automatically sized to match the surrounding child. To use, create an\n// inline element with the appropriate classes, like so:\n//\n// <a href=\"#\"><span class=\"glyphicon glyphicon-star\"></span> Star</a>\n\n// Import the fonts\n@font-face {\n font-family: 'Glyphicons Halflings';\n src: url('@{icon-font-path}@{icon-font-name}.eot');\n src: url('@{icon-font-path}@{icon-font-name}.eot?#iefix') format('embedded-opentype'),\n url('@{icon-font-path}@{icon-font-name}.woff') format('woff'),\n url('@{icon-font-path}@{icon-font-name}.ttf') format('truetype'),\n url('@{icon-font-path}@{icon-font-name}.svg#@{icon-font-svg-id}') format('svg');\n}\n\n// Catchall baseclass\n.glyphicon {\n position: relative;\n top: 1px;\n display: inline-block;\n font-family: 'Glyphicons Halflings';\n font-style: normal;\n font-weight: normal;\n line-height: 1;\n -webkit-font-smoothing: antialiased;\n -moz-osx-font-smoothing: grayscale;\n}\n\n// Individual icons\n.glyphicon-asterisk { &:before { content: \"\\2a\"; } }\n.glyphicon-plus { &:before { content: \"\\2b\"; } }\n.glyphicon-euro { &:before { content: \"\\20ac\"; } }\n.glyphicon-minus { &:before { content: \"\\2212\"; } }\n.glyphicon-cloud { &:before { content: \"\\2601\"; } }\n.glyphicon-envelope { &:before { content: \"\\2709\"; } }\n.glyphicon-pencil { &:before { content: \"\\270f\"; } }\n.glyphicon-glass { &:before { content: \"\\e001\"; } }\n.glyphicon-music { &:before { content: \"\\e002\"; } }\n.glyphicon-search { &:before { content: \"\\e003\"; } }\n.glyphicon-heart { &:before { content: \"\\e005\"; } }\n.glyphicon-star { &:before { content: \"\\e006\"; } }\n.glyphicon-star-empty { &:before { content: \"\\e007\"; } }\n.glyphicon-user { &:before { content: \"\\e008\"; } }\n.glyphicon-film { &:before { content: \"\\e009\"; } }\n.glyphicon-th-large { &:before { content: \"\\e010\"; } }\n.glyphicon-th { &:before { content: \"\\e011\"; } }\n.glyphicon-th-list { &:before { content: \"\\e012\"; } }\n.glyphicon-ok { &:before { content: \"\\e013\"; } }\n.glyphicon-remove { &:before { content: \"\\e014\"; } }\n.glyphicon-zoom-in { &:before { content: \"\\e015\"; } }\n.glyphicon-zoom-out { &:before { content: \"\\e016\"; } }\n.glyphicon-off { &:before { content: \"\\e017\"; } }\n.glyphicon-signal { &:before { content: \"\\e018\"; } }\n.glyphicon-cog { &:before { content: \"\\e019\"; } }\n.glyphicon-trash { &:before { content: \"\\e020\"; } }\n.glyphicon-home { &:before { content: \"\\e021\"; } }\n.glyphicon-file { &:before { content: \"\\e022\"; } }\n.glyphicon-time { &:before { content: \"\\e023\"; } }\n.glyphicon-road { &:before { content: \"\\e024\"; } }\n.glyphicon-download-alt { &:before { content: \"\\e025\"; } }\n.glyphicon-download { &:before { content: \"\\e026\"; } }\n.glyphicon-upload { &:before { content: \"\\e027\"; } }\n.glyphicon-inbox { &:before { content: \"\\e028\"; } }\n.glyphicon-play-circle { &:before { content: \"\\e029\"; } }\n.glyphicon-repeat { &:before { content: \"\\e030\"; } }\n.glyphicon-refresh { &:before { content: \"\\e031\"; } }\n.glyphicon-list-alt { &:before { content: \"\\e032\"; } }\n.glyphicon-lock { &:before { content: \"\\e033\"; } }\n.glyphicon-flag { &:before { content: \"\\e034\"; } }\n.glyphicon-headphones { &:before { content: \"\\e035\"; } }\n.glyphicon-volume-off { &:before { content: \"\\e036\"; } }\n.glyphicon-volume-down { &:before { content: \"\\e037\"; } }\n.glyphicon-volume-up { &:before { content: \"\\e038\"; } }\n.glyphicon-qrcode { &:before { content: \"\\e039\"; } }\n.glyphicon-barcode { &:before { content: \"\\e040\"; } }\n.glyphicon-tag { &:before { content: \"\\e041\"; } }\n.glyphicon-tags { &:before { content: \"\\e042\"; } }\n.glyphicon-book { &:before { content: \"\\e043\"; } }\n.glyphicon-bookmark { &:before { content: \"\\e044\"; } }\n.glyphicon-print { &:before { content: \"\\e045\"; } }\n.glyphicon-camera { &:before { content: \"\\e046\"; } }\n.glyphicon-font { &:before { content: \"\\e047\"; } }\n.glyphicon-bold { &:before { content: \"\\e048\"; } }\n.glyphicon-italic { &:before { content: \"\\e049\"; } }\n.glyphicon-text-height { &:before { content: \"\\e050\"; } }\n.glyphicon-text-width { &:before { content: \"\\e051\"; } }\n.glyphicon-align-left { &:before { content: \"\\e052\"; } }\n.glyphicon-align-center { &:before { content: \"\\e053\"; } }\n.glyphicon-align-right { &:before { content: \"\\e054\"; } }\n.glyphicon-align-justify { &:before { content: \"\\e055\"; } }\n.glyphicon-list { &:before { content: \"\\e056\"; } }\n.glyphicon-indent-left { &:before { content: \"\\e057\"; } }\n.glyphicon-indent-right { &:before { content: \"\\e058\"; } }\n.glyphicon-facetime-video { &:before { content: \"\\e059\"; } }\n.glyphicon-picture { &:before { content: \"\\e060\"; } }\n.glyphicon-map-marker { &:before { content: \"\\e062\"; } }\n.glyphicon-adjust { &:before { content: \"\\e063\"; } }\n.glyphicon-tint { &:before { content: \"\\e064\"; } }\n.glyphicon-edit { &:before { content: \"\\e065\"; } }\n.glyphicon-share { &:before { content: \"\\e066\"; } }\n.glyphicon-check { &:before { content: \"\\e067\"; } }\n.glyphicon-move { &:before { content: \"\\e068\"; } }\n.glyphicon-step-backward { &:before { content: \"\\e069\"; } }\n.glyphicon-fast-backward { &:before { content: \"\\e070\"; } }\n.glyphicon-backward { &:before { content: \"\\e071\"; } }\n.glyphicon-play { &:before { content: \"\\e072\"; } }\n.glyphicon-pause { &:before { content: \"\\e073\"; } }\n.glyphicon-stop { &:before { content: \"\\e074\"; } }\n.glyphicon-forward { &:before { content: \"\\e075\"; } }\n.glyphicon-fast-forward { &:before { content: \"\\e076\"; } }\n.glyphicon-step-forward { &:before { content: \"\\e077\"; } }\n.glyphicon-eject { &:before { content: \"\\e078\"; } }\n.glyphicon-chevron-left { &:before { content: \"\\e079\"; } }\n.glyphicon-chevron-right { &:before { content: \"\\e080\"; } }\n.glyphicon-plus-sign { &:before { content: \"\\e081\"; } }\n.glyphicon-minus-sign { &:before { content: \"\\e082\"; } }\n.glyphicon-remove-sign { &:before { content: \"\\e083\"; } }\n.glyphicon-ok-sign { &:before { content: \"\\e084\"; } }\n.glyphicon-question-sign { &:before { content: \"\\e085\"; } }\n.glyphicon-info-sign { &:before { content: \"\\e086\"; } }\n.glyphicon-screenshot { &:before { content: \"\\e087\"; } }\n.glyphicon-remove-circle { &:before { content: \"\\e088\"; } }\n.glyphicon-ok-circle { &:before { content: \"\\e089\"; } }\n.glyphicon-ban-circle { &:before { content: \"\\e090\"; } }\n.glyphicon-arrow-left { &:before { content: \"\\e091\"; } }\n.glyphicon-arrow-right { &:before { content: \"\\e092\"; } }\n.glyphicon-arrow-up { &:before { content: \"\\e093\"; } }\n.glyphicon-arrow-down { &:before { content: \"\\e094\"; } }\n.glyphicon-share-alt { &:before { content: \"\\e095\"; } }\n.glyphicon-resize-full { &:before { content: \"\\e096\"; } }\n.glyphicon-resize-small { &:before { content: \"\\e097\"; } }\n.glyphicon-exclamation-sign { &:before { content: \"\\e101\"; } }\n.glyphicon-gift { &:before { content: \"\\e102\"; } }\n.glyphicon-leaf { &:before { content: \"\\e103\"; } }\n.glyphicon-fire { &:before { content: \"\\e104\"; } }\n.glyphicon-eye-open { &:before { content: \"\\e105\"; } }\n.glyphicon-eye-close { &:before { content: \"\\e106\"; } }\n.glyphicon-warning-sign { &:before { content: \"\\e107\"; } }\n.glyphicon-plane { &:before { content: \"\\e108\"; } }\n.glyphicon-calendar { &:before { content: \"\\e109\"; } }\n.glyphicon-random { &:before { content: \"\\e110\"; } }\n.glyphicon-comment { &:before { content: \"\\e111\"; } }\n.glyphicon-magnet { &:before { content: \"\\e112\"; } }\n.glyphicon-chevron-up { &:before { content: \"\\e113\"; } }\n.glyphicon-chevron-down { &:before { content: \"\\e114\"; } }\n.glyphicon-retweet { &:before { content: \"\\e115\"; } }\n.glyphicon-shopping-cart { &:before { content: \"\\e116\"; } }\n.glyphicon-folder-close { &:before { content: \"\\e117\"; } }\n.glyphicon-folder-open { &:before { content: \"\\e118\"; } }\n.glyphicon-resize-vertical { &:before { content: \"\\e119\"; } }\n.glyphicon-resize-horizontal { &:before { content: \"\\e120\"; } }\n.glyphicon-hdd { &:before { content: \"\\e121\"; } }\n.glyphicon-bullhorn { &:before { content: \"\\e122\"; } }\n.glyphicon-bell { &:before { content: \"\\e123\"; } }\n.glyphicon-certificate { &:before { content: \"\\e124\"; } }\n.glyphicon-thumbs-up { &:before { content: \"\\e125\"; } }\n.glyphicon-thumbs-down { &:before { content: \"\\e126\"; } }\n.glyphicon-hand-right { &:before { content: \"\\e127\"; } }\n.glyphicon-hand-left { &:before { content: \"\\e128\"; } }\n.glyphicon-hand-up { &:before { content: \"\\e129\"; } }\n.glyphicon-hand-down { &:before { content: \"\\e130\"; } }\n.glyphicon-circle-arrow-right { &:before { content: \"\\e131\"; } }\n.glyphicon-circle-arrow-left { &:before { content: \"\\e132\"; } }\n.glyphicon-circle-arrow-up { &:before { content: \"\\e133\"; } }\n.glyphicon-circle-arrow-down { &:before { content: \"\\e134\"; } }\n.glyphicon-globe { &:before { content: \"\\e135\"; } }\n.glyphicon-wrench { &:before { content: \"\\e136\"; } }\n.glyphicon-tasks { &:before { content: \"\\e137\"; } }\n.glyphicon-filter { &:before { content: \"\\e138\"; } }\n.glyphicon-briefcase { &:before { content: \"\\e139\"; } }\n.glyphicon-fullscreen { &:before { content: \"\\e140\"; } }\n.glyphicon-dashboard { &:before { content: \"\\e141\"; } }\n.glyphicon-paperclip { &:before { content: \"\\e142\"; } }\n.glyphicon-heart-empty { &:before { content: \"\\e143\"; } }\n.glyphicon-link { &:before { content: \"\\e144\"; } }\n.glyphicon-phone { &:before { content: \"\\e145\"; } }\n.glyphicon-pushpin { &:before { content: \"\\e146\"; } }\n.glyphicon-usd { &:before { content: \"\\e148\"; } }\n.glyphicon-gbp { &:before { content: \"\\e149\"; } }\n.glyphicon-sort { &:before { content: \"\\e150\"; } }\n.glyphicon-sort-by-alphabet { &:before { content: \"\\e151\"; } }\n.glyphicon-sort-by-alphabet-alt { &:before { content: \"\\e152\"; } }\n.glyphicon-sort-by-order { &:before { content: \"\\e153\"; } }\n.glyphicon-sort-by-order-alt { &:before { content: \"\\e154\"; } }\n.glyphicon-sort-by-attributes { &:before { content: \"\\e155\"; } }\n.glyphicon-sort-by-attributes-alt { &:before { content: \"\\e156\"; } }\n.glyphicon-unchecked { &:before { content: \"\\e157\"; } }\n.glyphicon-expand { &:before { content: \"\\e158\"; } }\n.glyphicon-collapse-down { &:before { content: \"\\e159\"; } }\n.glyphicon-collapse-up { &:before { content: \"\\e160\"; } }\n.glyphicon-log-in { &:before { content: \"\\e161\"; } }\n.glyphicon-flash { &:before { content: \"\\e162\"; } }\n.glyphicon-log-out { &:before { content: \"\\e163\"; } }\n.glyphicon-new-window { &:before { content: \"\\e164\"; } }\n.glyphicon-record { &:before { content: \"\\e165\"; } }\n.glyphicon-save { &:before { content: \"\\e166\"; } }\n.glyphicon-open { &:before { content: \"\\e167\"; } }\n.glyphicon-saved { &:before { content: \"\\e168\"; } }\n.glyphicon-import { &:before { content: \"\\e169\"; } }\n.glyphicon-export { &:before { content: \"\\e170\"; } }\n.glyphicon-send { &:before { content: \"\\e171\"; } }\n.glyphicon-floppy-disk { &:before { content: \"\\e172\"; } }\n.glyphicon-floppy-saved { &:before { content: \"\\e173\"; } }\n.glyphicon-floppy-remove { &:before { content: \"\\e174\"; } }\n.glyphicon-floppy-save { &:before { content: \"\\e175\"; } }\n.glyphicon-floppy-open { &:before { content: \"\\e176\"; } }\n.glyphicon-credit-card { &:before { content: \"\\e177\"; } }\n.glyphicon-transfer { &:before { content: \"\\e178\"; } }\n.glyphicon-cutlery { &:before { content: \"\\e179\"; } }\n.glyphicon-header { &:before { content: \"\\e180\"; } }\n.glyphicon-compressed { &:before { content: \"\\e181\"; } }\n.glyphicon-earphone { &:before { content: \"\\e182\"; } }\n.glyphicon-phone-alt { &:before { content: \"\\e183\"; } }\n.glyphicon-tower { &:before { content: \"\\e184\"; } }\n.glyphicon-stats { &:before { content: \"\\e185\"; } }\n.glyphicon-sd-video { &:before { content: \"\\e186\"; } }\n.glyphicon-hd-video { &:before { content: \"\\e187\"; } }\n.glyphicon-subtitles { &:before { content: \"\\e188\"; } }\n.glyphicon-sound-stereo { &:before { content: \"\\e189\"; } }\n.glyphicon-sound-dolby { &:before { content: \"\\e190\"; } }\n.glyphicon-sound-5-1 { &:before { content: \"\\e191\"; } }\n.glyphicon-sound-6-1 { &:before { content: \"\\e192\"; } }\n.glyphicon-sound-7-1 { &:before { content: \"\\e193\"; } }\n.glyphicon-copyright-mark { &:before { content: \"\\e194\"; } }\n.glyphicon-registration-mark { &:before { content: \"\\e195\"; } }\n.glyphicon-cloud-download { &:before { content: \"\\e197\"; } }\n.glyphicon-cloud-upload { &:before { content: \"\\e198\"; } }\n.glyphicon-tree-conifer { &:before { content: \"\\e199\"; } }\n.glyphicon-tree-deciduous { &:before { content: \"\\e200\"; } }\n","//\n// Scaffolding\n// --------------------------------------------------\n\n\n// Reset the box-sizing\n//\n// Heads up! This reset may cause conflicts with some third-party widgets.\n// For recommendations on resolving such conflicts, see\n// http://getbootstrap.com/getting-started/#third-box-sizing\n* {\n .box-sizing(border-box);\n}\n*:before,\n*:after {\n .box-sizing(border-box);\n}\n\n\n// Body reset\n\nhtml {\n font-size: 10px;\n -webkit-tap-highlight-color: rgba(0,0,0,0);\n}\n\nbody {\n font-family: @font-family-base;\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @text-color;\n background-color: @body-bg;\n}\n\n// Reset fonts for relevant elements\ninput,\nbutton,\nselect,\ntextarea {\n font-family: inherit;\n font-size: inherit;\n line-height: inherit;\n}\n\n\n// Links\n\na {\n color: @link-color;\n text-decoration: none;\n\n &:hover,\n &:focus {\n color: @link-hover-color;\n text-decoration: underline;\n }\n\n &:focus {\n .tab-focus();\n }\n}\n\n\n// Figures\n//\n// We reset this here because previously Normalize had no `figure` margins. This\n// ensures we don't break anyone's use of the element.\n\nfigure {\n margin: 0;\n}\n\n\n// Images\n\nimg {\n vertical-align: middle;\n}\n\n// Responsive images (ensure images don't scale beyond their parents)\n.img-responsive {\n .img-responsive();\n}\n\n// Rounded corners\n.img-rounded {\n border-radius: @border-radius-large;\n}\n\n// Image thumbnails\n//\n// Heads up! This is mixin-ed into thumbnails.less for `.thumbnail`.\n.img-thumbnail {\n padding: @thumbnail-padding;\n line-height: @line-height-base;\n background-color: @thumbnail-bg;\n border: 1px solid @thumbnail-border;\n border-radius: @thumbnail-border-radius;\n .transition(all .2s ease-in-out);\n\n // Keep them at most 100% wide\n .img-responsive(inline-block);\n}\n\n// Perfect circle\n.img-circle {\n border-radius: 50%; // set radius in percents\n}\n\n\n// Horizontal rules\n\nhr {\n margin-top: @line-height-computed;\n margin-bottom: @line-height-computed;\n border: 0;\n border-top: 1px solid @hr-border;\n}\n\n\n// Only display content to screen readers\n//\n// See: http://a11yproject.com/posts/how-to-hide-content/\n\n.sr-only {\n position: absolute;\n width: 1px;\n height: 1px;\n margin: -1px;\n padding: 0;\n overflow: hidden;\n clip: rect(0,0,0,0);\n border: 0;\n}\n\n// Use in conjunction with .sr-only to only display content when it's focused.\n// Useful for \"Skip to main content\" links; see http://www.w3.org/TR/2013/NOTE-WCAG20-TECHS-20130905/G1\n// Credit: HTML5 Boilerplate\n\n.sr-only-focusable {\n &:active,\n &:focus {\n position: static;\n width: auto;\n height: auto;\n margin: 0;\n overflow: visible;\n clip: auto;\n }\n}\n","// Vendor Prefixes\n//\n// All vendor mixins are deprecated as of v3.2.0 due to the introduction of\n// Autoprefixer in our Gruntfile. They will be removed in v4.\n\n// - Animations\n// - Backface visibility\n// - Box shadow\n// - Box sizing\n// - Content columns\n// - Hyphens\n// - Placeholder text\n// - Transformations\n// - Transitions\n// - User Select\n\n\n// Animations\n.animation(@animation) {\n -webkit-animation: @animation;\n -o-animation: @animation;\n animation: @animation;\n}\n.animation-name(@name) {\n -webkit-animation-name: @name;\n animation-name: @name;\n}\n.animation-duration(@duration) {\n -webkit-animation-duration: @duration;\n animation-duration: @duration;\n}\n.animation-timing-function(@timing-function) {\n -webkit-animation-timing-function: @timing-function;\n animation-timing-function: @timing-function;\n}\n.animation-delay(@delay) {\n -webkit-animation-delay: @delay;\n animation-delay: @delay;\n}\n.animation-iteration-count(@iteration-count) {\n -webkit-animation-iteration-count: @iteration-count;\n animation-iteration-count: @iteration-count;\n}\n.animation-direction(@direction) {\n -webkit-animation-direction: @direction;\n animation-direction: @direction;\n}\n.animation-fill-mode(@fill-mode) {\n -webkit-animation-fill-mode: @fill-mode;\n animation-fill-mode: @fill-mode;\n}\n\n// Backface visibility\n// Prevent browsers from flickering when using CSS 3D transforms.\n// Default value is `visible`, but can be changed to `hidden`\n\n.backface-visibility(@visibility){\n -webkit-backface-visibility: @visibility;\n -moz-backface-visibility: @visibility;\n backface-visibility: @visibility;\n}\n\n// Drop shadows\n//\n// Note: Deprecated `.box-shadow()` as of v3.1.0 since all of Bootstrap's\n// supported browsers that have box shadow capabilities now support it.\n\n.box-shadow(@shadow) {\n -webkit-box-shadow: @shadow; // iOS <4.3 & Android <4.1\n box-shadow: @shadow;\n}\n\n// Box sizing\n.box-sizing(@boxmodel) {\n -webkit-box-sizing: @boxmodel;\n -moz-box-sizing: @boxmodel;\n box-sizing: @boxmodel;\n}\n\n// CSS3 Content Columns\n.content-columns(@column-count; @column-gap: @grid-gutter-width) {\n -webkit-column-count: @column-count;\n -moz-column-count: @column-count;\n column-count: @column-count;\n -webkit-column-gap: @column-gap;\n -moz-column-gap: @column-gap;\n column-gap: @column-gap;\n}\n\n// Optional hyphenation\n.hyphens(@mode: auto) {\n word-wrap: break-word;\n -webkit-hyphens: @mode;\n -moz-hyphens: @mode;\n -ms-hyphens: @mode; // IE10+\n -o-hyphens: @mode;\n hyphens: @mode;\n}\n\n// Placeholder text\n.placeholder(@color: @input-color-placeholder) {\n &::-moz-placeholder { color: @color; // Firefox\n opacity: 1; } // See https://github.com/twbs/bootstrap/pull/11526\n &:-ms-input-placeholder { color: @color; } // Internet Explorer 10+\n &::-webkit-input-placeholder { color: @color; } // Safari and Chrome\n}\n\n// Transformations\n.scale(@ratio) {\n -webkit-transform: scale(@ratio);\n -ms-transform: scale(@ratio); // IE9 only\n -o-transform: scale(@ratio);\n transform: scale(@ratio);\n}\n.scale(@ratioX; @ratioY) {\n -webkit-transform: scale(@ratioX, @ratioY);\n -ms-transform: scale(@ratioX, @ratioY); // IE9 only\n -o-transform: scale(@ratioX, @ratioY);\n transform: scale(@ratioX, @ratioY);\n}\n.scaleX(@ratio) {\n -webkit-transform: scaleX(@ratio);\n -ms-transform: scaleX(@ratio); // IE9 only\n -o-transform: scaleX(@ratio);\n transform: scaleX(@ratio);\n}\n.scaleY(@ratio) {\n -webkit-transform: scaleY(@ratio);\n -ms-transform: scaleY(@ratio); // IE9 only\n -o-transform: scaleY(@ratio);\n transform: scaleY(@ratio);\n}\n.skew(@x; @y) {\n -webkit-transform: skewX(@x) skewY(@y);\n -ms-transform: skewX(@x) skewY(@y); // See https://github.com/twbs/bootstrap/issues/4885; IE9+\n -o-transform: skewX(@x) skewY(@y);\n transform: skewX(@x) skewY(@y);\n}\n.translate(@x; @y) {\n -webkit-transform: translate(@x, @y);\n -ms-transform: translate(@x, @y); // IE9 only\n -o-transform: translate(@x, @y);\n transform: translate(@x, @y);\n}\n.translate3d(@x; @y; @z) {\n -webkit-transform: translate3d(@x, @y, @z);\n transform: translate3d(@x, @y, @z);\n}\n.rotate(@degrees) {\n -webkit-transform: rotate(@degrees);\n -ms-transform: rotate(@degrees); // IE9 only\n -o-transform: rotate(@degrees);\n transform: rotate(@degrees);\n}\n.rotateX(@degrees) {\n -webkit-transform: rotateX(@degrees);\n -ms-transform: rotateX(@degrees); // IE9 only\n -o-transform: rotateX(@degrees);\n transform: rotateX(@degrees);\n}\n.rotateY(@degrees) {\n -webkit-transform: rotateY(@degrees);\n -ms-transform: rotateY(@degrees); // IE9 only\n -o-transform: rotateY(@degrees);\n transform: rotateY(@degrees);\n}\n.perspective(@perspective) {\n -webkit-perspective: @perspective;\n -moz-perspective: @perspective;\n perspective: @perspective;\n}\n.perspective-origin(@perspective) {\n -webkit-perspective-origin: @perspective;\n -moz-perspective-origin: @perspective;\n perspective-origin: @perspective;\n}\n.transform-origin(@origin) {\n -webkit-transform-origin: @origin;\n -moz-transform-origin: @origin;\n -ms-transform-origin: @origin; // IE9 only\n transform-origin: @origin;\n}\n\n\n// Transitions\n\n.transition(@transition) {\n -webkit-transition: @transition;\n -o-transition: @transition;\n transition: @transition;\n}\n.transition-property(@transition-property) {\n -webkit-transition-property: @transition-property;\n transition-property: @transition-property;\n}\n.transition-delay(@transition-delay) {\n -webkit-transition-delay: @transition-delay;\n transition-delay: @transition-delay;\n}\n.transition-duration(@transition-duration) {\n -webkit-transition-duration: @transition-duration;\n transition-duration: @transition-duration;\n}\n.transition-timing-function(@timing-function) {\n -webkit-transition-timing-function: @timing-function;\n transition-timing-function: @timing-function;\n}\n.transition-transform(@transition) {\n -webkit-transition: -webkit-transform @transition;\n -moz-transition: -moz-transform @transition;\n -o-transition: -o-transform @transition;\n transition: transform @transition;\n}\n\n\n// User select\n// For selecting text on the page\n\n.user-select(@select) {\n -webkit-user-select: @select;\n -moz-user-select: @select;\n -ms-user-select: @select; // IE10+\n user-select: @select;\n}\n","// WebKit-style focus\n\n.tab-focus() {\n // Default\n outline: thin dotted;\n // WebKit\n outline: 5px auto -webkit-focus-ring-color;\n outline-offset: -2px;\n}\n","// Image Mixins\n// - Responsive image\n// - Retina image\n\n\n// Responsive image\n//\n// Keep images from scaling beyond the width of their parents.\n.img-responsive(@display: block) {\n display: @display;\n width: 100% \\9; // Force IE10 and below to size SVG images correctly\n max-width: 100%; // Part 1: Set a maximum relative to the parent\n height: auto; // Part 2: Scale the height according to the width, otherwise you get stretching\n}\n\n\n// Retina image\n//\n// Short retina mixin for setting background-image and -size. Note that the\n// spelling of `min--moz-device-pixel-ratio` is intentional.\n.img-retina(@file-1x; @file-2x; @width-1x; @height-1x) {\n background-image: url(\"@{file-1x}\");\n\n @media\n only screen and (-webkit-min-device-pixel-ratio: 2),\n only screen and ( min--moz-device-pixel-ratio: 2),\n only screen and ( -o-min-device-pixel-ratio: 2/1),\n only screen and ( min-device-pixel-ratio: 2),\n only screen and ( min-resolution: 192dpi),\n only screen and ( min-resolution: 2dppx) {\n background-image: url(\"@{file-2x}\");\n background-size: @width-1x @height-1x;\n }\n}\n","//\n// Typography\n// --------------------------------------------------\n\n\n// Headings\n// -------------------------\n\nh1, h2, h3, h4, h5, h6,\n.h1, .h2, .h3, .h4, .h5, .h6 {\n font-family: @headings-font-family;\n font-weight: @headings-font-weight;\n line-height: @headings-line-height;\n color: @headings-color;\n\n small,\n .small {\n font-weight: normal;\n line-height: 1;\n color: @headings-small-color;\n }\n}\n\nh1, .h1,\nh2, .h2,\nh3, .h3 {\n margin-top: @line-height-computed;\n margin-bottom: (@line-height-computed / 2);\n\n small,\n .small {\n font-size: 65%;\n }\n}\nh4, .h4,\nh5, .h5,\nh6, .h6 {\n margin-top: (@line-height-computed / 2);\n margin-bottom: (@line-height-computed / 2);\n\n small,\n .small {\n font-size: 75%;\n }\n}\n\nh1, .h1 { font-size: @font-size-h1; }\nh2, .h2 { font-size: @font-size-h2; }\nh3, .h3 { font-size: @font-size-h3; }\nh4, .h4 { font-size: @font-size-h4; }\nh5, .h5 { font-size: @font-size-h5; }\nh6, .h6 { font-size: @font-size-h6; }\n\n\n// Body text\n// -------------------------\n\np {\n margin: 0 0 (@line-height-computed / 2);\n}\n\n.lead {\n margin-bottom: @line-height-computed;\n font-size: floor((@font-size-base * 1.15));\n font-weight: 300;\n line-height: 1.4;\n\n @media (min-width: @screen-sm-min) {\n font-size: (@font-size-base * 1.5);\n }\n}\n\n\n// Emphasis & misc\n// -------------------------\n\n// Ex: (12px small font / 14px base font) * 100% = about 85%\nsmall,\n.small {\n font-size: floor((100% * @font-size-small / @font-size-base));\n}\n\n// Undo browser default styling\ncite {\n font-style: normal;\n}\n\nmark,\n.mark {\n background-color: @state-warning-bg;\n padding: .2em;\n}\n\n// Alignment\n.text-left { text-align: left; }\n.text-right { text-align: right; }\n.text-center { text-align: center; }\n.text-justify { text-align: justify; }\n.text-nowrap { white-space: nowrap; }\n\n// Transformation\n.text-lowercase { text-transform: lowercase; }\n.text-uppercase { text-transform: uppercase; }\n.text-capitalize { text-transform: capitalize; }\n\n// Contextual colors\n.text-muted {\n color: @text-muted;\n}\n.text-primary {\n .text-emphasis-variant(@brand-primary);\n}\n.text-success {\n .text-emphasis-variant(@state-success-text);\n}\n.text-info {\n .text-emphasis-variant(@state-info-text);\n}\n.text-warning {\n .text-emphasis-variant(@state-warning-text);\n}\n.text-danger {\n .text-emphasis-variant(@state-danger-text);\n}\n\n// Contextual backgrounds\n// For now we'll leave these alongside the text classes until v4 when we can\n// safely shift things around (per SemVer rules).\n.bg-primary {\n // Given the contrast here, this is the only class to have its color inverted\n // automatically.\n color: #fff;\n .bg-variant(@brand-primary);\n}\n.bg-success {\n .bg-variant(@state-success-bg);\n}\n.bg-info {\n .bg-variant(@state-info-bg);\n}\n.bg-warning {\n .bg-variant(@state-warning-bg);\n}\n.bg-danger {\n .bg-variant(@state-danger-bg);\n}\n\n\n// Page header\n// -------------------------\n\n.page-header {\n padding-bottom: ((@line-height-computed / 2) - 1);\n margin: (@line-height-computed * 2) 0 @line-height-computed;\n border-bottom: 1px solid @page-header-border-color;\n}\n\n\n// Lists\n// -------------------------\n\n// Unordered and Ordered lists\nul,\nol {\n margin-top: 0;\n margin-bottom: (@line-height-computed / 2);\n ul,\n ol {\n margin-bottom: 0;\n }\n}\n\n// List options\n\n// Unstyled keeps list items block level, just removes default browser padding and list-style\n.list-unstyled {\n padding-left: 0;\n list-style: none;\n}\n\n// Inline turns list items into inline-block\n.list-inline {\n .list-unstyled();\n margin-left: -5px;\n\n > li {\n display: inline-block;\n padding-left: 5px;\n padding-right: 5px;\n }\n}\n\n// Description Lists\ndl {\n margin-top: 0; // Remove browser default\n margin-bottom: @line-height-computed;\n}\ndt,\ndd {\n line-height: @line-height-base;\n}\ndt {\n font-weight: bold;\n}\ndd {\n margin-left: 0; // Undo browser default\n}\n\n// Horizontal description lists\n//\n// Defaults to being stacked without any of the below styles applied, until the\n// grid breakpoint is reached (default of ~768px).\n\n.dl-horizontal {\n dd {\n &:extend(.clearfix all); // Clear the floated `dt` if an empty `dd` is present\n }\n\n @media (min-width: @grid-float-breakpoint) {\n dt {\n float: left;\n width: (@dl-horizontal-offset - 20);\n clear: left;\n text-align: right;\n .text-overflow();\n }\n dd {\n margin-left: @dl-horizontal-offset;\n }\n }\n}\n\n\n// Misc\n// -------------------------\n\n// Abbreviations and acronyms\nabbr[title],\n// Add data-* attribute to help out our tooltip plugin, per https://github.com/twbs/bootstrap/issues/5257\nabbr[data-original-title] {\n cursor: help;\n border-bottom: 1px dotted @abbr-border-color;\n}\n.initialism {\n font-size: 90%;\n text-transform: uppercase;\n}\n\n// Blockquotes\nblockquote {\n padding: (@line-height-computed / 2) @line-height-computed;\n margin: 0 0 @line-height-computed;\n font-size: @blockquote-font-size;\n border-left: 5px solid @blockquote-border-color;\n\n p,\n ul,\n ol {\n &:last-child {\n margin-bottom: 0;\n }\n }\n\n // Note: Deprecated small and .small as of v3.1.0\n // Context: https://github.com/twbs/bootstrap/issues/11660\n footer,\n small,\n .small {\n display: block;\n font-size: 80%; // back to default font-size\n line-height: @line-height-base;\n color: @blockquote-small-color;\n\n &:before {\n content: '\\2014 \\00A0'; // em dash, nbsp\n }\n }\n}\n\n// Opposite alignment of blockquote\n//\n// Heads up: `blockquote.pull-right` has been deprecated as of v3.1.0.\n.blockquote-reverse,\nblockquote.pull-right {\n padding-right: 15px;\n padding-left: 0;\n border-right: 5px solid @blockquote-border-color;\n border-left: 0;\n text-align: right;\n\n // Account for citation\n footer,\n small,\n .small {\n &:before { content: ''; }\n &:after {\n content: '\\00A0 \\2014'; // nbsp, em dash\n }\n }\n}\n\n// Quotes\nblockquote:before,\nblockquote:after {\n content: \"\";\n}\n\n// Addresses\naddress {\n margin-bottom: @line-height-computed;\n font-style: normal;\n line-height: @line-height-base;\n}\n","// Typography\n\n.text-emphasis-variant(@color) {\n color: @color;\n a&:hover {\n color: darken(@color, 10%);\n }\n}\n","// Contextual backgrounds\n\n.bg-variant(@color) {\n background-color: @color;\n a&:hover {\n background-color: darken(@color, 10%);\n }\n}\n","// Text overflow\n// Requires inline-block or block for proper styling\n\n.text-overflow() {\n overflow: hidden;\n text-overflow: ellipsis;\n white-space: nowrap;\n}\n","//\n// Code (inline and block)\n// --------------------------------------------------\n\n\n// Inline and block code styles\ncode,\nkbd,\npre,\nsamp {\n font-family: @font-family-monospace;\n}\n\n// Inline code\ncode {\n padding: 2px 4px;\n font-size: 90%;\n color: @code-color;\n background-color: @code-bg;\n border-radius: @border-radius-base;\n}\n\n// User input typically entered via keyboard\nkbd {\n padding: 2px 4px;\n font-size: 90%;\n color: @kbd-color;\n background-color: @kbd-bg;\n border-radius: @border-radius-small;\n box-shadow: inset 0 -1px 0 rgba(0,0,0,.25);\n\n kbd {\n padding: 0;\n font-size: 100%;\n box-shadow: none;\n }\n}\n\n// Blocks of code\npre {\n display: block;\n padding: ((@line-height-computed - 1) / 2);\n margin: 0 0 (@line-height-computed / 2);\n font-size: (@font-size-base - 1); // 14px to 13px\n line-height: @line-height-base;\n word-break: break-all;\n word-wrap: break-word;\n color: @pre-color;\n background-color: @pre-bg;\n border: 1px solid @pre-border-color;\n border-radius: @border-radius-base;\n\n // Account for some code outputs that place code tags in pre tags\n code {\n padding: 0;\n font-size: inherit;\n color: inherit;\n white-space: pre-wrap;\n background-color: transparent;\n border-radius: 0;\n }\n}\n\n// Enable scrollable blocks of code\n.pre-scrollable {\n max-height: @pre-scrollable-max-height;\n overflow-y: scroll;\n}\n","//\n// Grid system\n// --------------------------------------------------\n\n\n// Container widths\n//\n// Set the container width, and override it for fixed navbars in media queries.\n\n.container {\n .container-fixed();\n\n @media (min-width: @screen-sm-min) {\n width: @container-sm;\n }\n @media (min-width: @screen-md-min) {\n width: @container-md;\n }\n @media (min-width: @screen-lg-min) {\n width: @container-lg;\n }\n}\n\n\n// Fluid container\n//\n// Utilizes the mixin meant for fixed width containers, but without any defined\n// width for fluid, full width layouts.\n\n.container-fluid {\n .container-fixed();\n}\n\n\n// Row\n//\n// Rows contain and clear the floats of your columns.\n\n.row {\n .make-row();\n}\n\n\n// Columns\n//\n// Common styles for small and large grid columns\n\n.make-grid-columns();\n\n\n// Extra small grid\n//\n// Columns, offsets, pushes, and pulls for extra small devices like\n// smartphones.\n\n.make-grid(xs);\n\n\n// Small grid\n//\n// Columns, offsets, pushes, and pulls for the small device range, from phones\n// to tablets.\n\n@media (min-width: @screen-sm-min) {\n .make-grid(sm);\n}\n\n\n// Medium grid\n//\n// Columns, offsets, pushes, and pulls for the desktop device range.\n\n@media (min-width: @screen-md-min) {\n .make-grid(md);\n}\n\n\n// Large grid\n//\n// Columns, offsets, pushes, and pulls for the large desktop device range.\n\n@media (min-width: @screen-lg-min) {\n .make-grid(lg);\n}\n","// Grid system\n//\n// Generate semantic grid columns with these mixins.\n\n// Centered container element\n.container-fixed(@gutter: @grid-gutter-width) {\n margin-right: auto;\n margin-left: auto;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n &:extend(.clearfix all);\n}\n\n// Creates a wrapper for a series of columns\n.make-row(@gutter: @grid-gutter-width) {\n margin-left: (@gutter / -2);\n margin-right: (@gutter / -2);\n &:extend(.clearfix all);\n}\n\n// Generate the extra small columns\n.make-xs-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n float: left;\n width: percentage((@columns / @grid-columns));\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n}\n.make-xs-column-offset(@columns) {\n margin-left: percentage((@columns / @grid-columns));\n}\n.make-xs-column-push(@columns) {\n left: percentage((@columns / @grid-columns));\n}\n.make-xs-column-pull(@columns) {\n right: percentage((@columns / @grid-columns));\n}\n\n// Generate the small columns\n.make-sm-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-sm-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-offset(@columns) {\n @media (min-width: @screen-sm-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-push(@columns) {\n @media (min-width: @screen-sm-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-sm-column-pull(@columns) {\n @media (min-width: @screen-sm-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n\n// Generate the medium columns\n.make-md-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-md-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-offset(@columns) {\n @media (min-width: @screen-md-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-push(@columns) {\n @media (min-width: @screen-md-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-md-column-pull(@columns) {\n @media (min-width: @screen-md-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n\n// Generate the large columns\n.make-lg-column(@columns; @gutter: @grid-gutter-width) {\n position: relative;\n min-height: 1px;\n padding-left: (@gutter / 2);\n padding-right: (@gutter / 2);\n\n @media (min-width: @screen-lg-min) {\n float: left;\n width: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-offset(@columns) {\n @media (min-width: @screen-lg-min) {\n margin-left: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-push(@columns) {\n @media (min-width: @screen-lg-min) {\n left: percentage((@columns / @grid-columns));\n }\n}\n.make-lg-column-pull(@columns) {\n @media (min-width: @screen-lg-min) {\n right: percentage((@columns / @grid-columns));\n }\n}\n","// Framework grid generation\n//\n// Used only by Bootstrap to generate the correct number of grid classes given\n// any value of `@grid-columns`.\n\n.make-grid-columns() {\n // Common styles for all sizes of grid columns, widths 1-12\n .col(@index) when (@index = 1) { // initial\n @item: ~\".col-xs-@{index}, .col-sm-@{index}, .col-md-@{index}, .col-lg-@{index}\";\n .col((@index + 1), @item);\n }\n .col(@index, @list) when (@index =< @grid-columns) { // general; \"=<\" isn't a typo\n @item: ~\".col-xs-@{index}, .col-sm-@{index}, .col-md-@{index}, .col-lg-@{index}\";\n .col((@index + 1), ~\"@{list}, @{item}\");\n }\n .col(@index, @list) when (@index > @grid-columns) { // terminal\n @{list} {\n position: relative;\n // Prevent columns from collapsing when empty\n min-height: 1px;\n // Inner gutter via padding\n padding-left: (@grid-gutter-width / 2);\n padding-right: (@grid-gutter-width / 2);\n }\n }\n .col(1); // kickstart it\n}\n\n.float-grid-columns(@class) {\n .col(@index) when (@index = 1) { // initial\n @item: ~\".col-@{class}-@{index}\";\n .col((@index + 1), @item);\n }\n .col(@index, @list) when (@index =< @grid-columns) { // general\n @item: ~\".col-@{class}-@{index}\";\n .col((@index + 1), ~\"@{list}, @{item}\");\n }\n .col(@index, @list) when (@index > @grid-columns) { // terminal\n @{list} {\n float: left;\n }\n }\n .col(1); // kickstart it\n}\n\n.calc-grid-column(@index, @class, @type) when (@type = width) and (@index > 0) {\n .col-@{class}-@{index} {\n width: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = push) and (@index > 0) {\n .col-@{class}-push-@{index} {\n left: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = push) and (@index = 0) {\n .col-@{class}-push-0 {\n left: auto;\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = pull) and (@index > 0) {\n .col-@{class}-pull-@{index} {\n right: percentage((@index / @grid-columns));\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = pull) and (@index = 0) {\n .col-@{class}-pull-0 {\n right: auto;\n }\n}\n.calc-grid-column(@index, @class, @type) when (@type = offset) {\n .col-@{class}-offset-@{index} {\n margin-left: percentage((@index / @grid-columns));\n }\n}\n\n// Basic looping in LESS\n.loop-grid-columns(@index, @class, @type) when (@index >= 0) {\n .calc-grid-column(@index, @class, @type);\n // next iteration\n .loop-grid-columns((@index - 1), @class, @type);\n}\n\n// Create grid for specific class\n.make-grid(@class) {\n .float-grid-columns(@class);\n .loop-grid-columns(@grid-columns, @class, width);\n .loop-grid-columns(@grid-columns, @class, pull);\n .loop-grid-columns(@grid-columns, @class, push);\n .loop-grid-columns(@grid-columns, @class, offset);\n}\n","//\n// Tables\n// --------------------------------------------------\n\n\ntable {\n background-color: @table-bg;\n}\nth {\n text-align: left;\n}\n\n\n// Baseline styles\n\n.table {\n width: 100%;\n max-width: 100%;\n margin-bottom: @line-height-computed;\n // Cells\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n padding: @table-cell-padding;\n line-height: @line-height-base;\n vertical-align: top;\n border-top: 1px solid @table-border-color;\n }\n }\n }\n // Bottom align for column headings\n > thead > tr > th {\n vertical-align: bottom;\n border-bottom: 2px solid @table-border-color;\n }\n // Remove top border from thead by default\n > caption + thead,\n > colgroup + thead,\n > thead:first-child {\n > tr:first-child {\n > th,\n > td {\n border-top: 0;\n }\n }\n }\n // Account for multiple tbody instances\n > tbody + tbody {\n border-top: 2px solid @table-border-color;\n }\n\n // Nesting\n .table {\n background-color: @body-bg;\n }\n}\n\n\n// Condensed table w/ half padding\n\n.table-condensed {\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n padding: @table-condensed-cell-padding;\n }\n }\n }\n}\n\n\n// Bordered version\n//\n// Add borders all around the table and between all the columns.\n\n.table-bordered {\n border: 1px solid @table-border-color;\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n border: 1px solid @table-border-color;\n }\n }\n }\n > thead > tr {\n > th,\n > td {\n border-bottom-width: 2px;\n }\n }\n}\n\n\n// Zebra-striping\n//\n// Default zebra-stripe styles (alternating gray and transparent backgrounds)\n\n.table-striped {\n > tbody > tr:nth-child(odd) {\n > td,\n > th {\n background-color: @table-bg-accent;\n }\n }\n}\n\n\n// Hover effect\n//\n// Placed here since it has to come after the potential zebra striping\n\n.table-hover {\n > tbody > tr:hover {\n > td,\n > th {\n background-color: @table-bg-hover;\n }\n }\n}\n\n\n// Table cell sizing\n//\n// Reset default table behavior\n\ntable col[class*=\"col-\"] {\n position: static; // Prevent border hiding in Firefox and IE9/10 (see https://github.com/twbs/bootstrap/issues/11623)\n float: none;\n display: table-column;\n}\ntable {\n td,\n th {\n &[class*=\"col-\"] {\n position: static; // Prevent border hiding in Firefox and IE9/10 (see https://github.com/twbs/bootstrap/issues/11623)\n float: none;\n display: table-cell;\n }\n }\n}\n\n\n// Table backgrounds\n//\n// Exact selectors below required to override `.table-striped` and prevent\n// inheritance to nested tables.\n\n// Generate the contextual variants\n.table-row-variant(active; @table-bg-active);\n.table-row-variant(success; @state-success-bg);\n.table-row-variant(info; @state-info-bg);\n.table-row-variant(warning; @state-warning-bg);\n.table-row-variant(danger; @state-danger-bg);\n\n\n// Responsive tables\n//\n// Wrap your tables in `.table-responsive` and we'll make them mobile friendly\n// by enabling horizontal scrolling. Only applies <768px. Everything above that\n// will display normally.\n\n.table-responsive {\n @media screen and (max-width: @screen-xs-max) {\n width: 100%;\n margin-bottom: (@line-height-computed * 0.75);\n overflow-y: hidden;\n overflow-x: auto;\n -ms-overflow-style: -ms-autohiding-scrollbar;\n border: 1px solid @table-border-color;\n -webkit-overflow-scrolling: touch;\n\n // Tighten up spacing\n > .table {\n margin-bottom: 0;\n\n // Ensure the content doesn't wrap\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th,\n > td {\n white-space: nowrap;\n }\n }\n }\n }\n\n // Special overrides for the bordered tables\n > .table-bordered {\n border: 0;\n\n // Nuke the appropriate borders so that the parent can handle them\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th:first-child,\n > td:first-child {\n border-left: 0;\n }\n > th:last-child,\n > td:last-child {\n border-right: 0;\n }\n }\n }\n\n // Only nuke the last row's bottom-border in `tbody` and `tfoot` since\n // chances are there will be only one `tr` in a `thead` and that would\n // remove the border altogether.\n > tbody,\n > tfoot {\n > tr:last-child {\n > th,\n > td {\n border-bottom: 0;\n }\n }\n }\n\n }\n }\n}\n","// Tables\n\n.table-row-variant(@state; @background) {\n // Exact selectors below required to override `.table-striped` and prevent\n // inheritance to nested tables.\n .table > thead > tr,\n .table > tbody > tr,\n .table > tfoot > tr {\n > td.@{state},\n > th.@{state},\n &.@{state} > td,\n &.@{state} > th {\n background-color: @background;\n }\n }\n\n // Hover states for `.table-hover`\n // Note: this is not available for cells or rows within `thead` or `tfoot`.\n .table-hover > tbody > tr {\n > td.@{state}:hover,\n > th.@{state}:hover,\n &.@{state}:hover > td,\n &:hover > .@{state},\n &.@{state}:hover > th {\n background-color: darken(@background, 5%);\n }\n }\n}\n","//\n// Forms\n// --------------------------------------------------\n\n\n// Normalize non-controls\n//\n// Restyle and baseline non-control form elements.\n\nfieldset {\n padding: 0;\n margin: 0;\n border: 0;\n // Chrome and Firefox set a `min-width: min-content;` on fieldsets,\n // so we reset that to ensure it behaves more like a standard block element.\n // See https://github.com/twbs/bootstrap/issues/12359.\n min-width: 0;\n}\n\nlegend {\n display: block;\n width: 100%;\n padding: 0;\n margin-bottom: @line-height-computed;\n font-size: (@font-size-base * 1.5);\n line-height: inherit;\n color: @legend-color;\n border: 0;\n border-bottom: 1px solid @legend-border-color;\n}\n\nlabel {\n display: inline-block;\n max-width: 100%; // Force IE8 to wrap long content (see https://github.com/twbs/bootstrap/issues/13141)\n margin-bottom: 5px;\n font-weight: bold;\n}\n\n\n// Normalize form controls\n//\n// While most of our form styles require extra classes, some basic normalization\n// is required to ensure optimum display with or without those classes to better\n// address browser inconsistencies.\n\n// Override content-box in Normalize (* isn't specific enough)\ninput[type=\"search\"] {\n .box-sizing(border-box);\n}\n\n// Position radios and checkboxes better\ninput[type=\"radio\"],\ninput[type=\"checkbox\"] {\n margin: 4px 0 0;\n margin-top: 1px \\9; // IE8-9\n line-height: normal;\n}\n\n// Set the height of file controls to match text inputs\ninput[type=\"file\"] {\n display: block;\n}\n\n// Make range inputs behave like textual form controls\ninput[type=\"range\"] {\n display: block;\n width: 100%;\n}\n\n// Make multiple select elements height not fixed\nselect[multiple],\nselect[size] {\n height: auto;\n}\n\n// Focus for file, radio, and checkbox\ninput[type=\"file\"]:focus,\ninput[type=\"radio\"]:focus,\ninput[type=\"checkbox\"]:focus {\n .tab-focus();\n}\n\n// Adjust output element\noutput {\n display: block;\n padding-top: (@padding-base-vertical + 1);\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @input-color;\n}\n\n\n// Common form controls\n//\n// Shared size and type resets for form controls. Apply `.form-control` to any\n// of the following form controls:\n//\n// select\n// textarea\n// input[type=\"text\"]\n// input[type=\"password\"]\n// input[type=\"datetime\"]\n// input[type=\"datetime-local\"]\n// input[type=\"date\"]\n// input[type=\"month\"]\n// input[type=\"time\"]\n// input[type=\"week\"]\n// input[type=\"number\"]\n// input[type=\"email\"]\n// input[type=\"url\"]\n// input[type=\"search\"]\n// input[type=\"tel\"]\n// input[type=\"color\"]\n\n.form-control {\n display: block;\n width: 100%;\n height: @input-height-base; // Make inputs at least the height of their button counterpart (base line-height + padding + border)\n padding: @padding-base-vertical @padding-base-horizontal;\n font-size: @font-size-base;\n line-height: @line-height-base;\n color: @input-color;\n background-color: @input-bg;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid @input-border;\n border-radius: @input-border-radius;\n .box-shadow(inset 0 1px 1px rgba(0,0,0,.075));\n .transition(~\"border-color ease-in-out .15s, box-shadow ease-in-out .15s\");\n\n // Customize the `:focus` state to imitate native WebKit styles.\n .form-control-focus();\n\n // Placeholder\n .placeholder();\n\n // Disabled and read-only inputs\n //\n // HTML5 says that controls under a fieldset > legend:first-child won't be\n // disabled if the fieldset is disabled. Due to implementation difficulty, we\n // don't honor that edge case; we style them as disabled anyway.\n &[disabled],\n &[readonly],\n fieldset[disabled] & {\n cursor: not-allowed;\n background-color: @input-bg-disabled;\n opacity: 1; // iOS fix for unreadable disabled content\n }\n\n // Reset height for `textarea`s\n textarea& {\n height: auto;\n }\n}\n\n\n// Search inputs in iOS\n//\n// This overrides the extra rounded corners on search inputs in iOS so that our\n// `.form-control` class can properly style them. Note that this cannot simply\n// be added to `.form-control` as it's not specific enough. For details, see\n// https://github.com/twbs/bootstrap/issues/11586.\n\ninput[type=\"search\"] {\n -webkit-appearance: none;\n}\n\n\n// Special styles for iOS temporal inputs\n//\n// In Mobile Safari, setting `display: block` on temporal inputs causes the\n// text within the input to become vertically misaligned.\n// As a workaround, we set a pixel line-height that matches the\n// given height of the input. Since this fucks up everything else, we have to\n// appropriately reset it for Internet Explorer and the size variations.\n\ninput[type=\"date\"],\ninput[type=\"time\"],\ninput[type=\"datetime-local\"],\ninput[type=\"month\"] {\n line-height: @input-height-base;\n // IE8+ misaligns the text within date inputs, so we reset\n line-height: @line-height-base ~\"\\0\";\n\n &.input-sm {\n line-height: @input-height-small;\n }\n &.input-lg {\n line-height: @input-height-large;\n }\n}\n\n\n// Form groups\n//\n// Designed to help with the organization and spacing of vertical forms. For\n// horizontal forms, use the predefined grid classes.\n\n.form-group {\n margin-bottom: 15px;\n}\n\n\n// Checkboxes and radios\n//\n// Indent the labels to position radios/checkboxes as hanging controls.\n\n.radio,\n.checkbox {\n position: relative;\n display: block;\n min-height: @line-height-computed; // clear the floating input if there is no label text\n margin-top: 10px;\n margin-bottom: 10px;\n\n label {\n padding-left: 20px;\n margin-bottom: 0;\n font-weight: normal;\n cursor: pointer;\n }\n}\n.radio input[type=\"radio\"],\n.radio-inline input[type=\"radio\"],\n.checkbox input[type=\"checkbox\"],\n.checkbox-inline input[type=\"checkbox\"] {\n position: absolute;\n margin-left: -20px;\n margin-top: 4px \\9;\n}\n\n.radio + .radio,\n.checkbox + .checkbox {\n margin-top: -5px; // Move up sibling radios or checkboxes for tighter spacing\n}\n\n// Radios and checkboxes on same line\n.radio-inline,\n.checkbox-inline {\n display: inline-block;\n padding-left: 20px;\n margin-bottom: 0;\n vertical-align: middle;\n font-weight: normal;\n cursor: pointer;\n}\n.radio-inline + .radio-inline,\n.checkbox-inline + .checkbox-inline {\n margin-top: 0;\n margin-left: 10px; // space out consecutive inline controls\n}\n\n// Apply same disabled cursor tweak as for inputs\n// Some special care is needed because <label>s don't inherit their parent's `cursor`.\n//\n// Note: Neither radios nor checkboxes can be readonly.\ninput[type=\"radio\"],\ninput[type=\"checkbox\"] {\n &[disabled],\n &.disabled,\n fieldset[disabled] & {\n cursor: not-allowed;\n }\n}\n// These classes are used directly on <label>s\n.radio-inline,\n.checkbox-inline {\n &.disabled,\n fieldset[disabled] & {\n cursor: not-allowed;\n }\n}\n// These classes are used on elements with <label> descendants\n.radio,\n.checkbox {\n &.disabled,\n fieldset[disabled] & {\n label {\n cursor: not-allowed;\n }\n }\n}\n\n\n// Static form control text\n//\n// Apply class to a `p` element to make any string of text align with labels in\n// a horizontal form layout.\n\n.form-control-static {\n // Size it appropriately next to real form controls\n padding-top: (@padding-base-vertical + 1);\n padding-bottom: (@padding-base-vertical + 1);\n // Remove default margin from `p`\n margin-bottom: 0;\n\n &.input-lg,\n &.input-sm {\n padding-left: 0;\n padding-right: 0;\n }\n}\n\n\n// Form control sizing\n//\n// Build on `.form-control` with modifier classes to decrease or increase the\n// height and font-size of form controls.\n\n.input-sm {\n .input-size(@input-height-small; @padding-small-vertical; @padding-small-horizontal; @font-size-small; @line-height-small; @border-radius-small);\n}\n\n.input-lg {\n .input-size(@input-height-large; @padding-large-vertical; @padding-large-horizontal; @font-size-large; @line-height-large; @border-radius-large);\n}\n\n\n// Form control feedback states\n//\n// Apply contextual and semantic states to individual form controls.\n\n.has-feedback {\n // Enable absolute positioning\n position: relative;\n\n // Ensure icons don't overlap text\n .form-control {\n padding-right: (@input-height-base * 1.25);\n }\n}\n// Feedback icon (requires .glyphicon classes)\n.form-control-feedback {\n position: absolute;\n top: (@line-height-computed + 5); // Height of the `label` and its margin\n right: 0;\n z-index: 2; // Ensure icon is above input groups\n display: block;\n width: @input-height-base;\n height: @input-height-base;\n line-height: @input-height-base;\n text-align: center;\n}\n.input-lg + .form-control-feedback {\n width: @input-height-large;\n height: @input-height-large;\n line-height: @input-height-large;\n}\n.input-sm + .form-control-feedback {\n width: @input-height-small;\n height: @input-height-small;\n line-height: @input-height-small;\n}\n\n// Feedback states\n.has-success {\n .form-control-validation(@state-success-text; @state-success-text; @state-success-bg);\n}\n.has-warning {\n .form-control-validation(@state-warning-text; @state-warning-text; @state-warning-bg);\n}\n.has-error {\n .form-control-validation(@state-danger-text; @state-danger-text; @state-danger-bg);\n}\n\n\n// Reposition feedback icon if label is hidden with \"screenreader only\" state\n.has-feedback label.sr-only ~ .form-control-feedback {\n top: 0;\n}\n\n\n// Help text\n//\n// Apply to any element you wish to create light text for placement immediately\n// below a form control. Use for general help, formatting, or instructional text.\n\n.help-block {\n display: block; // account for any element using help-block\n margin-top: 5px;\n margin-bottom: 10px;\n color: lighten(@text-color, 25%); // lighten the text some for contrast\n}\n\n\n\n// Inline forms\n//\n// Make forms appear inline(-block) by adding the `.form-inline` class. Inline\n// forms begin stacked on extra small (mobile) devices and then go inline when\n// viewports reach <768px.\n//\n// Requires wrapping inputs and labels with `.form-group` for proper display of\n// default HTML form controls and our custom form controls (e.g., input groups).\n//\n// Heads up! This is mixin-ed into `.navbar-form` in navbars.less.\n\n.form-inline {\n\n // Kick in the inline\n @media (min-width: @screen-sm-min) {\n // Inline-block all the things for \"inline\"\n .form-group {\n display: inline-block;\n margin-bottom: 0;\n vertical-align: middle;\n }\n\n // In navbar-form, allow folks to *not* use `.form-group`\n .form-control {\n display: inline-block;\n width: auto; // Prevent labels from stacking above inputs in `.form-group`\n vertical-align: middle;\n }\n\n .input-group {\n display: inline-table;\n vertical-align: middle;\n\n .input-group-addon,\n .input-group-btn,\n .form-control {\n width: auto;\n }\n }\n\n // Input groups need that 100% width though\n .input-group > .form-control {\n width: 100%;\n }\n\n .control-label {\n margin-bottom: 0;\n vertical-align: middle;\n }\n\n // Remove default margin on radios/checkboxes that were used for stacking, and\n // then undo the floating of radios and checkboxes to match (which also avoids\n // a bug in WebKit: https://github.com/twbs/bootstrap/issues/1969).\n .radio,\n .checkbox {\n display: inline-block;\n margin-top: 0;\n margin-bottom: 0;\n vertical-align: middle;\n\n label {\n padding-left: 0;\n }\n }\n .radio input[type=\"radio\"],\n .checkbox input[type=\"checkbox\"] {\n position: relative;\n margin-left: 0;\n }\n\n // Validation states\n //\n // Reposition the icon because it's now within a grid column and columns have\n // `position: relative;` on them. Also accounts for the grid gutter padding.\n .has-feedback .form-control-feedback {\n top: 0;\n }\n }\n}\n\n\n// Horizontal forms\n//\n// Horizontal forms are built on grid classes and allow you to create forms with\n// labels on the left and inputs on the right.\n\n.form-horizontal {\n\n // Consistent vertical alignment of radios and checkboxes\n //\n // Labels also get some reset styles, but that is scoped to a media query below.\n .radio,\n .checkbox,\n .radio-inline,\n .checkbox-inline {\n margin-top: 0;\n margin-bottom: 0;\n padding-top: (@padding-base-vertical + 1); // Default padding plus a border\n }\n // Account for padding we're adding to ensure the alignment and of help text\n // and other content below items\n .radio,\n .checkbox {\n min-height: (@line-height-computed + (@padding-base-vertical + 1));\n }\n\n // Make form groups behave like rows\n .form-group {\n .make-row();\n }\n\n // Reset spacing and right align labels, but scope to media queries so that\n // labels on narrow viewports stack the same as a default form example.\n @media (min-width: @screen-sm-min) {\n .control-label {\n text-align: right;\n margin-bottom: 0;\n padding-top: (@padding-base-vertical + 1); // Default padding plus a border\n }\n }\n\n // Validation states\n //\n // Reposition the icon because it's now within a grid column and columns have\n // `position: relative;` on them. Also accounts for the grid gutter padding.\n .has-feedback .form-control-feedback {\n top: 0;\n right: (@grid-gutter-width / 2);\n }\n\n // Form group sizes\n //\n // Quick utility class for applying `.input-lg` and `.input-sm` styles to the\n // inputs and labels within a `.form-group`.\n .form-group-lg {\n @media (min-width: @screen-sm-min) {\n .control-label {\n padding-top: ((@padding-large-vertical * @line-height-large) + 1);\n }\n }\n .form-control {\n &:extend(.input-lg);\n }\n }\n .form-group-sm {\n @media (min-width: @screen-sm-min) {\n .control-label {\n padding-top: (@padding-small-vertical + 1);\n }\n }\n .form-control {\n &:extend(.input-sm);\n }\n }\n}\n","// Form validation states\n//\n// Used in forms.less to generate the form validation CSS for warnings, errors,\n// and successes.\n\n.form-control-validation(@text-color: #555; @border-color: #ccc; @background-color: #f5f5f5) {\n // Color the label and help text\n .help-block,\n .control-label,\n .radio,\n .checkbox,\n .radio-inline,\n .checkbox-inline {\n color: @text-color;\n }\n // Set the border and box shadow on specific inputs to match\n .form-control {\n border-color: @border-color;\n .box-shadow(inset 0 1px 1px rgba(0,0,0,.075)); // Redeclare so transitions work\n &:focus {\n border-color: darken(@border-color, 10%);\n @shadow: inset 0 1px 1px rgba(0,0,0,.075), 0 0 6px lighten(@border-color, 20%);\n .box-shadow(@shadow);\n }\n }\n // Set validation states also for addons\n .input-group-addon {\n color: @text-color;\n border-color: @border-color;\n background-color: @background-color;\n }\n // Optional feedback icon\n .form-control-feedback {\n color: @text-color;\n }\n}\n\n\n// Form control focus state\n//\n// Generate a customized focus state and for any input with the specified color,\n// which defaults to the `@input-border-focus` variable.\n//\n// We highly encourage you to not customize the default value, but instead use\n// this to tweak colors on an as-needed basis. This aesthetic change is based on\n// WebKit's default styles, but applicable to a wider range of browsers. Its\n// usability and accessibility should be taken into account with any change.\n//\n// Example usage: change the default blue border and shadow to white for better\n// contrast against a dark gray background.\n.form-control-focus(@color: @input-border-focus) {\n @color-rgba: rgba(red(@color), green(@color), blue(@color), .6);\n &:focus {\n border-color: @color;\n outline: 0;\n .box-shadow(~\"inset 0 1px 1px rgba(0,0,0,.075), 0 0 8px @{color-rgba}\");\n }\n}\n\n// Form control sizing\n//\n// Relative text size, padding, and border-radii changes for form controls. For\n// horizontal sizing, wrap controls in the predefined grid classes. `<select>`\n// element gets special love because it's special, and that's a fact!\n.input-size(@input-height; @padding-vertical; @padding-horizontal; @font-size; @line-height; @border-radius) {\n height: @input-height;\n padding: @padding-vertical @padding-horizontal;\n font-size: @font-size;\n line-height: @line-height;\n border-radius: @border-radius;\n\n select& {\n height: @input-height;\n line-height: @input-height;\n }\n\n textarea&,\n select[multiple]& {\n height: auto;\n }\n}\n","//\n// Buttons\n// --------------------------------------------------\n\n\n// Base styles\n// --------------------------------------------------\n\n.btn {\n display: inline-block;\n margin-bottom: 0; // For input.btn\n font-weight: @btn-font-weight;\n text-align: center;\n vertical-align: middle;\n cursor: pointer;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid transparent;\n white-space: nowrap;\n .button-size(@padding-base-vertical; @padding-base-horizontal; @font-size-base; @line-height-base; @border-radius-base);\n .user-select(none);\n\n &,\n &:active,\n &.active {\n &:focus {\n .tab-focus();\n }\n }\n\n &:hover,\n &:focus {\n color: @btn-default-color;\n text-decoration: none;\n }\n\n &:active,\n &.active {\n outline: 0;\n background-image: none;\n .box-shadow(inset 0 3px 5px rgba(0,0,0,.125));\n }\n\n &.disabled,\n &[disabled],\n fieldset[disabled] & {\n cursor: not-allowed;\n pointer-events: none; // Future-proof disabling of clicks\n .opacity(.65);\n .box-shadow(none);\n }\n}\n\n\n// Alternate buttons\n// --------------------------------------------------\n\n.btn-default {\n .button-variant(@btn-default-color; @btn-default-bg; @btn-default-border);\n}\n.btn-primary {\n .button-variant(@btn-primary-color; @btn-primary-bg; @btn-primary-border);\n}\n// Success appears as green\n.btn-success {\n .button-variant(@btn-success-color; @btn-success-bg; @btn-success-border);\n}\n// Info appears as blue-green\n.btn-info {\n .button-variant(@btn-info-color; @btn-info-bg; @btn-info-border);\n}\n// Warning appears as orange\n.btn-warning {\n .button-variant(@btn-warning-color; @btn-warning-bg; @btn-warning-border);\n}\n// Danger and error appear as red\n.btn-danger {\n .button-variant(@btn-danger-color; @btn-danger-bg; @btn-danger-border);\n}\n\n\n// Link buttons\n// -------------------------\n\n// Make a button look and behave like a link\n.btn-link {\n color: @link-color;\n font-weight: normal;\n cursor: pointer;\n border-radius: 0;\n\n &,\n &:active,\n &[disabled],\n fieldset[disabled] & {\n background-color: transparent;\n .box-shadow(none);\n }\n &,\n &:hover,\n &:focus,\n &:active {\n border-color: transparent;\n }\n &:hover,\n &:focus {\n color: @link-hover-color;\n text-decoration: underline;\n background-color: transparent;\n }\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus {\n color: @btn-link-disabled-color;\n text-decoration: none;\n }\n }\n}\n\n\n// Button Sizes\n// --------------------------------------------------\n\n.btn-lg {\n // line-height: ensure even-numbered height of button next to large input\n .button-size(@padding-large-vertical; @padding-large-horizontal; @font-size-large; @line-height-large; @border-radius-large);\n}\n.btn-sm {\n // line-height: ensure proper height of button next to small input\n .button-size(@padding-small-vertical; @padding-small-horizontal; @font-size-small; @line-height-small; @border-radius-small);\n}\n.btn-xs {\n .button-size(@padding-xs-vertical; @padding-xs-horizontal; @font-size-small; @line-height-small; @border-radius-small);\n}\n\n\n// Block button\n// --------------------------------------------------\n\n.btn-block {\n display: block;\n width: 100%;\n}\n\n// Vertically space out multiple block buttons\n.btn-block + .btn-block {\n margin-top: 5px;\n}\n\n// Specificity overrides\ninput[type=\"submit\"],\ninput[type=\"reset\"],\ninput[type=\"button\"] {\n &.btn-block {\n width: 100%;\n }\n}\n","// Button variants\n//\n// Easily pump out default styles, as well as :hover, :focus, :active,\n// and disabled options for all buttons\n\n.button-variant(@color; @background; @border) {\n color: @color;\n background-color: @background;\n border-color: @border;\n\n &:hover,\n &:focus,\n &:active,\n &.active,\n .open > .dropdown-toggle& {\n color: @color;\n background-color: darken(@background, 10%);\n border-color: darken(@border, 12%);\n }\n &:active,\n &.active,\n .open > .dropdown-toggle& {\n background-image: none;\n }\n &.disabled,\n &[disabled],\n fieldset[disabled] & {\n &,\n &:hover,\n &:focus,\n &:active,\n &.active {\n background-color: @background;\n border-color: @border;\n }\n }\n\n .badge {\n color: @background;\n background-color: @color;\n }\n}\n\n// Button sizes\n.button-size(@padding-vertical; @padding-horizontal; @font-size; @line-height; @border-radius) {\n padding: @padding-vertical @padding-horizontal;\n font-size: @font-size;\n line-height: @line-height;\n border-radius: @border-radius;\n}\n","// Opacity\n\n.opacity(@opacity) {\n opacity: @opacity;\n // IE8 filter\n @opacity-ie: (@opacity * 100);\n filter: ~\"alpha(opacity=@{opacity-ie})\";\n}\n","//\n// Component animations\n// --------------------------------------------------\n\n// Heads up!\n//\n// We don't use the `.opacity()` mixin here since it causes a bug with text\n// fields in IE7-8. Source: https://github.com/twbs/bootstrap/pull/3552.\n\n.fade {\n opacity: 0;\n .transition(opacity .15s linear);\n &.in {\n opacity: 1;\n }\n}\n\n.collapse {\n display: none;\n\n &.in { display: block; }\n tr&.in { display: table-row; }\n tbody&.in { display: table-row-group; }\n}\n\n.collapsing {\n position: relative;\n height: 0;\n overflow: hidden;\n .transition(height .35s ease);\n}\n","//\n// Dropdown menus\n// --------------------------------------------------\n\n\n// Dropdown arrow/caret\n.caret {\n display: inline-block;\n width: 0;\n height: 0;\n margin-left: 2px;\n vertical-align: middle;\n border-top: @caret-width-base solid;\n border-right: @caret-width-base solid transparent;\n border-left: @caret-width-base solid transparent;\n}\n\n// The dropdown wrapper (div)\n.dropdown {\n position: relative;\n}\n\n// Prevent the focus on the dropdown toggle when closing dropdowns\n.dropdown-toggle:focus {\n outline: 0;\n}\n\n// The dropdown menu (ul)\n.dropdown-menu {\n position: absolute;\n top: 100%;\n left: 0;\n z-index: @zindex-dropdown;\n display: none; // none by default, but block on \"open\" of the menu\n float: left;\n min-width: 160px;\n padding: 5px 0;\n margin: 2px 0 0; // override default ul\n list-style: none;\n font-size: @font-size-base;\n text-align: left; // Ensures proper alignment if parent has it changed (e.g., modal footer)\n background-color: @dropdown-bg;\n border: 1px solid @dropdown-fallback-border; // IE8 fallback\n border: 1px solid @dropdown-border;\n border-radius: @border-radius-base;\n .box-shadow(0 6px 12px rgba(0,0,0,.175));\n background-clip: padding-box;\n\n // Aligns the dropdown menu to right\n //\n // Deprecated as of 3.1.0 in favor of `.dropdown-menu-[dir]`\n &.pull-right {\n right: 0;\n left: auto;\n }\n\n // Dividers (basically an hr) within the dropdown\n .divider {\n .nav-divider(@dropdown-divider-bg);\n }\n\n // Links within the dropdown menu\n > li > a {\n display: block;\n padding: 3px 20px;\n clear: both;\n font-weight: normal;\n line-height: @line-height-base;\n color: @dropdown-link-color;\n white-space: nowrap; // prevent links from randomly breaking onto new lines\n }\n}\n\n// Hover/Focus state\n.dropdown-menu > li > a {\n &:hover,\n &:focus {\n text-decoration: none;\n color: @dropdown-link-hover-color;\n background-color: @dropdown-link-hover-bg;\n }\n}\n\n// Active state\n.dropdown-menu > .active > a {\n &,\n &:hover,\n &:focus {\n color: @dropdown-link-active-color;\n text-decoration: none;\n outline: 0;\n background-color: @dropdown-link-active-bg;\n }\n}\n\n// Disabled state\n//\n// Gray out text and ensure the hover/focus state remains gray\n\n.dropdown-menu > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @dropdown-link-disabled-color;\n }\n}\n// Nuke hover/focus effects\n.dropdown-menu > .disabled > a {\n &:hover,\n &:focus {\n text-decoration: none;\n background-color: transparent;\n background-image: none; // Remove CSS gradient\n .reset-filter();\n cursor: not-allowed;\n }\n}\n\n// Open state for the dropdown\n.open {\n // Show the menu\n > .dropdown-menu {\n display: block;\n }\n\n // Remove the outline when :focus is triggered\n > a {\n outline: 0;\n }\n}\n\n// Menu positioning\n//\n// Add extra class to `.dropdown-menu` to flip the alignment of the dropdown\n// menu with the parent.\n.dropdown-menu-right {\n left: auto; // Reset the default from `.dropdown-menu`\n right: 0;\n}\n// With v3, we enabled auto-flipping if you have a dropdown within a right\n// aligned nav component. To enable the undoing of that, we provide an override\n// to restore the default dropdown menu alignment.\n//\n// This is only for left-aligning a dropdown menu within a `.navbar-right` or\n// `.pull-right` nav component.\n.dropdown-menu-left {\n left: 0;\n right: auto;\n}\n\n// Dropdown section headers\n.dropdown-header {\n display: block;\n padding: 3px 20px;\n font-size: @font-size-small;\n line-height: @line-height-base;\n color: @dropdown-header-color;\n white-space: nowrap; // as with > li > a\n}\n\n// Backdrop to catch body clicks on mobile, etc.\n.dropdown-backdrop {\n position: fixed;\n left: 0;\n right: 0;\n bottom: 0;\n top: 0;\n z-index: (@zindex-dropdown - 10);\n}\n\n// Right aligned dropdowns\n.pull-right > .dropdown-menu {\n right: 0;\n left: auto;\n}\n\n// Allow for dropdowns to go bottom up (aka, dropup-menu)\n//\n// Just add .dropup after the standard .dropdown class and you're set, bro.\n// TODO: abstract this so that the navbar fixed styles are not placed here?\n\n.dropup,\n.navbar-fixed-bottom .dropdown {\n // Reverse the caret\n .caret {\n border-top: 0;\n border-bottom: @caret-width-base solid;\n content: \"\";\n }\n // Different positioning for bottom up menu\n .dropdown-menu {\n top: auto;\n bottom: 100%;\n margin-bottom: 1px;\n }\n}\n\n\n// Component alignment\n//\n// Reiterate per navbar.less and the modified component alignment there.\n\n@media (min-width: @grid-float-breakpoint) {\n .navbar-right {\n .dropdown-menu {\n .dropdown-menu-right();\n }\n // Necessary for overrides of the default right aligned menu.\n // Will remove come v4 in all likelihood.\n .dropdown-menu-left {\n .dropdown-menu-left();\n }\n }\n}\n\n","// Horizontal dividers\n//\n// Dividers (basically an hr) within dropdowns and nav lists\n\n.nav-divider(@color: #e5e5e5) {\n height: 1px;\n margin: ((@line-height-computed / 2) - 1) 0;\n overflow: hidden;\n background-color: @color;\n}\n","// Reset filters for IE\n//\n// When you need to remove a gradient background, do not forget to use this to reset\n// the IE filter for IE9 and below.\n\n.reset-filter() {\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(enabled = false)\"));\n}\n","//\n// Button groups\n// --------------------------------------------------\n\n// Make the div behave like a button\n.btn-group,\n.btn-group-vertical {\n position: relative;\n display: inline-block;\n vertical-align: middle; // match .btn alignment given font-size hack above\n > .btn {\n position: relative;\n float: left;\n // Bring the \"active\" button to the front\n &:hover,\n &:focus,\n &:active,\n &.active {\n z-index: 2;\n }\n &:focus {\n // Remove focus outline when dropdown JS adds it after closing the menu\n outline: 0;\n }\n }\n}\n\n// Prevent double borders when buttons are next to each other\n.btn-group {\n .btn + .btn,\n .btn + .btn-group,\n .btn-group + .btn,\n .btn-group + .btn-group {\n margin-left: -1px;\n }\n}\n\n// Optional: Group multiple button groups together for a toolbar\n.btn-toolbar {\n margin-left: -5px; // Offset the first child's margin\n &:extend(.clearfix all);\n\n .btn-group,\n .input-group {\n float: left;\n }\n > .btn,\n > .btn-group,\n > .input-group {\n margin-left: 5px;\n }\n}\n\n.btn-group > .btn:not(:first-child):not(:last-child):not(.dropdown-toggle) {\n border-radius: 0;\n}\n\n// Set corners individual because sometimes a single button can be in a .btn-group and we need :first-child and :last-child to both match\n.btn-group > .btn:first-child {\n margin-left: 0;\n &:not(:last-child):not(.dropdown-toggle) {\n .border-right-radius(0);\n }\n}\n// Need .dropdown-toggle since :last-child doesn't apply given a .dropdown-menu immediately after it\n.btn-group > .btn:last-child:not(:first-child),\n.btn-group > .dropdown-toggle:not(:first-child) {\n .border-left-radius(0);\n}\n\n// Custom edits for including btn-groups within btn-groups (useful for including dropdown buttons within a btn-group)\n.btn-group > .btn-group {\n float: left;\n}\n.btn-group > .btn-group:not(:first-child):not(:last-child) > .btn {\n border-radius: 0;\n}\n.btn-group > .btn-group:first-child {\n > .btn:last-child,\n > .dropdown-toggle {\n .border-right-radius(0);\n }\n}\n.btn-group > .btn-group:last-child > .btn:first-child {\n .border-left-radius(0);\n}\n\n// On active and open, don't show outline\n.btn-group .dropdown-toggle:active,\n.btn-group.open .dropdown-toggle {\n outline: 0;\n}\n\n\n// Sizing\n//\n// Remix the default button sizing classes into new ones for easier manipulation.\n\n.btn-group-xs > .btn { &:extend(.btn-xs); }\n.btn-group-sm > .btn { &:extend(.btn-sm); }\n.btn-group-lg > .btn { &:extend(.btn-lg); }\n\n\n// Split button dropdowns\n// ----------------------\n\n// Give the line between buttons some depth\n.btn-group > .btn + .dropdown-toggle {\n padding-left: 8px;\n padding-right: 8px;\n}\n.btn-group > .btn-lg + .dropdown-toggle {\n padding-left: 12px;\n padding-right: 12px;\n}\n\n// The clickable button for toggling the menu\n// Remove the gradient and set the same inset shadow as the :active state\n.btn-group.open .dropdown-toggle {\n .box-shadow(inset 0 3px 5px rgba(0,0,0,.125));\n\n // Show no shadow for `.btn-link` since it has no other button styles.\n &.btn-link {\n .box-shadow(none);\n }\n}\n\n\n// Reposition the caret\n.btn .caret {\n margin-left: 0;\n}\n// Carets in other button sizes\n.btn-lg .caret {\n border-width: @caret-width-large @caret-width-large 0;\n border-bottom-width: 0;\n}\n// Upside down carets for .dropup\n.dropup .btn-lg .caret {\n border-width: 0 @caret-width-large @caret-width-large;\n}\n\n\n// Vertical button groups\n// ----------------------\n\n.btn-group-vertical {\n > .btn,\n > .btn-group,\n > .btn-group > .btn {\n display: block;\n float: none;\n width: 100%;\n max-width: 100%;\n }\n\n // Clear floats so dropdown menus can be properly placed\n > .btn-group {\n &:extend(.clearfix all);\n > .btn {\n float: none;\n }\n }\n\n > .btn + .btn,\n > .btn + .btn-group,\n > .btn-group + .btn,\n > .btn-group + .btn-group {\n margin-top: -1px;\n margin-left: 0;\n }\n}\n\n.btn-group-vertical > .btn {\n &:not(:first-child):not(:last-child) {\n border-radius: 0;\n }\n &:first-child:not(:last-child) {\n border-top-right-radius: @border-radius-base;\n .border-bottom-radius(0);\n }\n &:last-child:not(:first-child) {\n border-bottom-left-radius: @border-radius-base;\n .border-top-radius(0);\n }\n}\n.btn-group-vertical > .btn-group:not(:first-child):not(:last-child) > .btn {\n border-radius: 0;\n}\n.btn-group-vertical > .btn-group:first-child:not(:last-child) {\n > .btn:last-child,\n > .dropdown-toggle {\n .border-bottom-radius(0);\n }\n}\n.btn-group-vertical > .btn-group:last-child:not(:first-child) > .btn:first-child {\n .border-top-radius(0);\n}\n\n\n\n// Justified button groups\n// ----------------------\n\n.btn-group-justified {\n display: table;\n width: 100%;\n table-layout: fixed;\n border-collapse: separate;\n > .btn,\n > .btn-group {\n float: none;\n display: table-cell;\n width: 1%;\n }\n > .btn-group .btn {\n width: 100%;\n }\n\n > .btn-group .dropdown-menu {\n left: auto;\n }\n}\n\n\n// Checkbox and radio options\n//\n// In order to support the browser's form validation feedback, powered by the\n// `required` attribute, we have to \"hide\" the inputs via `opacity`. We cannot\n// use `display: none;` or `visibility: hidden;` as that also hides the popover.\n// This way, we ensure a DOM element is visible to position the popover from.\n//\n// See https://github.com/twbs/bootstrap/pull/12794 for more.\n\n[data-toggle=\"buttons\"] > .btn > input[type=\"radio\"],\n[data-toggle=\"buttons\"] > .btn > input[type=\"checkbox\"] {\n position: absolute;\n z-index: -1;\n .opacity(0);\n}\n","// Single side border-radius\n\n.border-top-radius(@radius) {\n border-top-right-radius: @radius;\n border-top-left-radius: @radius;\n}\n.border-right-radius(@radius) {\n border-bottom-right-radius: @radius;\n border-top-right-radius: @radius;\n}\n.border-bottom-radius(@radius) {\n border-bottom-right-radius: @radius;\n border-bottom-left-radius: @radius;\n}\n.border-left-radius(@radius) {\n border-bottom-left-radius: @radius;\n border-top-left-radius: @radius;\n}\n","//\n// Input groups\n// --------------------------------------------------\n\n// Base styles\n// -------------------------\n.input-group {\n position: relative; // For dropdowns\n display: table;\n border-collapse: separate; // prevent input groups from inheriting border styles from table cells when placed within a table\n\n // Undo padding and float of grid classes\n &[class*=\"col-\"] {\n float: none;\n padding-left: 0;\n padding-right: 0;\n }\n\n .form-control {\n // Ensure that the input is always above the *appended* addon button for\n // proper border colors.\n position: relative;\n z-index: 2;\n\n // IE9 fubars the placeholder attribute in text inputs and the arrows on\n // select elements in input groups. To fix it, we float the input. Details:\n // https://github.com/twbs/bootstrap/issues/11561#issuecomment-28936855\n float: left;\n\n width: 100%;\n margin-bottom: 0;\n }\n}\n\n// Sizing options\n//\n// Remix the default form control sizing classes into new ones for easier\n// manipulation.\n\n.input-group-lg > .form-control,\n.input-group-lg > .input-group-addon,\n.input-group-lg > .input-group-btn > .btn {\n .input-lg();\n}\n.input-group-sm > .form-control,\n.input-group-sm > .input-group-addon,\n.input-group-sm > .input-group-btn > .btn {\n .input-sm();\n}\n\n\n// Display as table-cell\n// -------------------------\n.input-group-addon,\n.input-group-btn,\n.input-group .form-control {\n display: table-cell;\n\n &:not(:first-child):not(:last-child) {\n border-radius: 0;\n }\n}\n// Addon and addon wrapper for buttons\n.input-group-addon,\n.input-group-btn {\n width: 1%;\n white-space: nowrap;\n vertical-align: middle; // Match the inputs\n}\n\n// Text input groups\n// -------------------------\n.input-group-addon {\n padding: @padding-base-vertical @padding-base-horizontal;\n font-size: @font-size-base;\n font-weight: normal;\n line-height: 1;\n color: @input-color;\n text-align: center;\n background-color: @input-group-addon-bg;\n border: 1px solid @input-group-addon-border-color;\n border-radius: @border-radius-base;\n\n // Sizing\n &.input-sm {\n padding: @padding-small-vertical @padding-small-horizontal;\n font-size: @font-size-small;\n border-radius: @border-radius-small;\n }\n &.input-lg {\n padding: @padding-large-vertical @padding-large-horizontal;\n font-size: @font-size-large;\n border-radius: @border-radius-large;\n }\n\n // Nuke default margins from checkboxes and radios to vertically center within.\n input[type=\"radio\"],\n input[type=\"checkbox\"] {\n margin-top: 0;\n }\n}\n\n// Reset rounded corners\n.input-group .form-control:first-child,\n.input-group-addon:first-child,\n.input-group-btn:first-child > .btn,\n.input-group-btn:first-child > .btn-group > .btn,\n.input-group-btn:first-child > .dropdown-toggle,\n.input-group-btn:last-child > .btn:not(:last-child):not(.dropdown-toggle),\n.input-group-btn:last-child > .btn-group:not(:last-child) > .btn {\n .border-right-radius(0);\n}\n.input-group-addon:first-child {\n border-right: 0;\n}\n.input-group .form-control:last-child,\n.input-group-addon:last-child,\n.input-group-btn:last-child > .btn,\n.input-group-btn:last-child > .btn-group > .btn,\n.input-group-btn:last-child > .dropdown-toggle,\n.input-group-btn:first-child > .btn:not(:first-child),\n.input-group-btn:first-child > .btn-group:not(:first-child) > .btn {\n .border-left-radius(0);\n}\n.input-group-addon:last-child {\n border-left: 0;\n}\n\n// Button input groups\n// -------------------------\n.input-group-btn {\n position: relative;\n // Jankily prevent input button groups from wrapping with `white-space` and\n // `font-size` in combination with `inline-block` on buttons.\n font-size: 0;\n white-space: nowrap;\n\n // Negative margin for spacing, position for bringing hovered/focused/actived\n // element above the siblings.\n > .btn {\n position: relative;\n + .btn {\n margin-left: -1px;\n }\n // Bring the \"active\" button to the front\n &:hover,\n &:focus,\n &:active {\n z-index: 2;\n }\n }\n\n // Negative margin to only have a 1px border between the two\n &:first-child {\n > .btn,\n > .btn-group {\n margin-right: -1px;\n }\n }\n &:last-child {\n > .btn,\n > .btn-group {\n margin-left: -1px;\n }\n }\n}\n","//\n// Navs\n// --------------------------------------------------\n\n\n// Base class\n// --------------------------------------------------\n\n.nav {\n margin-bottom: 0;\n padding-left: 0; // Override default ul/ol\n list-style: none;\n &:extend(.clearfix all);\n\n > li {\n position: relative;\n display: block;\n\n > a {\n position: relative;\n display: block;\n padding: @nav-link-padding;\n &:hover,\n &:focus {\n text-decoration: none;\n background-color: @nav-link-hover-bg;\n }\n }\n\n // Disabled state sets text to gray and nukes hover/tab effects\n &.disabled > a {\n color: @nav-disabled-link-color;\n\n &:hover,\n &:focus {\n color: @nav-disabled-link-hover-color;\n text-decoration: none;\n background-color: transparent;\n cursor: not-allowed;\n }\n }\n }\n\n // Open dropdowns\n .open > a {\n &,\n &:hover,\n &:focus {\n background-color: @nav-link-hover-bg;\n border-color: @link-color;\n }\n }\n\n // Nav dividers (deprecated with v3.0.1)\n //\n // This should have been removed in v3 with the dropping of `.nav-list`, but\n // we missed it. We don't currently support this anywhere, but in the interest\n // of maintaining backward compatibility in case you use it, it's deprecated.\n .nav-divider {\n .nav-divider();\n }\n\n // Prevent IE8 from misplacing imgs\n //\n // See https://github.com/h5bp/html5-boilerplate/issues/984#issuecomment-3985989\n > li > a > img {\n max-width: none;\n }\n}\n\n\n// Tabs\n// -------------------------\n\n// Give the tabs something to sit on\n.nav-tabs {\n border-bottom: 1px solid @nav-tabs-border-color;\n > li {\n float: left;\n // Make the list-items overlay the bottom border\n margin-bottom: -1px;\n\n // Actual tabs (as links)\n > a {\n margin-right: 2px;\n line-height: @line-height-base;\n border: 1px solid transparent;\n border-radius: @border-radius-base @border-radius-base 0 0;\n &:hover {\n border-color: @nav-tabs-link-hover-border-color @nav-tabs-link-hover-border-color @nav-tabs-border-color;\n }\n }\n\n // Active state, and its :hover to override normal :hover\n &.active > a {\n &,\n &:hover,\n &:focus {\n color: @nav-tabs-active-link-hover-color;\n background-color: @nav-tabs-active-link-hover-bg;\n border: 1px solid @nav-tabs-active-link-hover-border-color;\n border-bottom-color: transparent;\n cursor: default;\n }\n }\n }\n // pulling this in mainly for less shorthand\n &.nav-justified {\n .nav-justified();\n .nav-tabs-justified();\n }\n}\n\n\n// Pills\n// -------------------------\n.nav-pills {\n > li {\n float: left;\n\n // Links rendered as pills\n > a {\n border-radius: @nav-pills-border-radius;\n }\n + li {\n margin-left: 2px;\n }\n\n // Active state\n &.active > a {\n &,\n &:hover,\n &:focus {\n color: @nav-pills-active-link-hover-color;\n background-color: @nav-pills-active-link-hover-bg;\n }\n }\n }\n}\n\n\n// Stacked pills\n.nav-stacked {\n > li {\n float: none;\n + li {\n margin-top: 2px;\n margin-left: 0; // no need for this gap between nav items\n }\n }\n}\n\n\n// Nav variations\n// --------------------------------------------------\n\n// Justified nav links\n// -------------------------\n\n.nav-justified {\n width: 100%;\n\n > li {\n float: none;\n > a {\n text-align: center;\n margin-bottom: 5px;\n }\n }\n\n > .dropdown .dropdown-menu {\n top: auto;\n left: auto;\n }\n\n @media (min-width: @screen-sm-min) {\n > li {\n display: table-cell;\n width: 1%;\n > a {\n margin-bottom: 0;\n }\n }\n }\n}\n\n// Move borders to anchors instead of bottom of list\n//\n// Mixin for adding on top the shared `.nav-justified` styles for our tabs\n.nav-tabs-justified {\n border-bottom: 0;\n\n > li > a {\n // Override margin from .nav-tabs\n margin-right: 0;\n border-radius: @border-radius-base;\n }\n\n > .active > a,\n > .active > a:hover,\n > .active > a:focus {\n border: 1px solid @nav-tabs-justified-link-border-color;\n }\n\n @media (min-width: @screen-sm-min) {\n > li > a {\n border-bottom: 1px solid @nav-tabs-justified-link-border-color;\n border-radius: @border-radius-base @border-radius-base 0 0;\n }\n > .active > a,\n > .active > a:hover,\n > .active > a:focus {\n border-bottom-color: @nav-tabs-justified-active-link-border-color;\n }\n }\n}\n\n\n// Tabbable tabs\n// -------------------------\n\n// Hide tabbable panes to start, show them when `.active`\n.tab-content {\n > .tab-pane {\n display: none;\n }\n > .active {\n display: block;\n }\n}\n\n\n// Dropdowns\n// -------------------------\n\n// Specific dropdowns\n.nav-tabs .dropdown-menu {\n // make dropdown border overlap tab border\n margin-top: -1px;\n // Remove the top rounded corners here since there is a hard edge above the menu\n .border-top-radius(0);\n}\n","//\n// Navbars\n// --------------------------------------------------\n\n\n// Wrapper and base class\n//\n// Provide a static navbar from which we expand to create full-width, fixed, and\n// other navbar variations.\n\n.navbar {\n position: relative;\n min-height: @navbar-height; // Ensure a navbar always shows (e.g., without a .navbar-brand in collapsed mode)\n margin-bottom: @navbar-margin-bottom;\n border: 1px solid transparent;\n\n // Prevent floats from breaking the navbar\n &:extend(.clearfix all);\n\n @media (min-width: @grid-float-breakpoint) {\n border-radius: @navbar-border-radius;\n }\n}\n\n\n// Navbar heading\n//\n// Groups `.navbar-brand` and `.navbar-toggle` into a single component for easy\n// styling of responsive aspects.\n\n.navbar-header {\n &:extend(.clearfix all);\n\n @media (min-width: @grid-float-breakpoint) {\n float: left;\n }\n}\n\n\n// Navbar collapse (body)\n//\n// Group your navbar content into this for easy collapsing and expanding across\n// various device sizes. By default, this content is collapsed when <768px, but\n// will expand past that for a horizontal display.\n//\n// To start (on mobile devices) the navbar links, forms, and buttons are stacked\n// vertically and include a `max-height` to overflow in case you have too much\n// content for the user's viewport.\n\n.navbar-collapse {\n overflow-x: visible;\n padding-right: @navbar-padding-horizontal;\n padding-left: @navbar-padding-horizontal;\n border-top: 1px solid transparent;\n box-shadow: inset 0 1px 0 rgba(255,255,255,.1);\n &:extend(.clearfix all);\n -webkit-overflow-scrolling: touch;\n\n &.in {\n overflow-y: auto;\n }\n\n @media (min-width: @grid-float-breakpoint) {\n width: auto;\n border-top: 0;\n box-shadow: none;\n\n &.collapse {\n display: block !important;\n height: auto !important;\n padding-bottom: 0; // Override default setting\n overflow: visible !important;\n }\n\n &.in {\n overflow-y: visible;\n }\n\n // Undo the collapse side padding for navbars with containers to ensure\n // alignment of right-aligned contents.\n .navbar-fixed-top &,\n .navbar-static-top &,\n .navbar-fixed-bottom & {\n padding-left: 0;\n padding-right: 0;\n }\n }\n}\n\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n .navbar-collapse {\n max-height: @navbar-collapse-max-height;\n\n @media (max-width: @screen-xs-min) and (orientation: landscape) {\n max-height: 200px;\n }\n }\n}\n\n\n// Both navbar header and collapse\n//\n// When a container is present, change the behavior of the header and collapse.\n\n.container,\n.container-fluid {\n > .navbar-header,\n > .navbar-collapse {\n margin-right: -@navbar-padding-horizontal;\n margin-left: -@navbar-padding-horizontal;\n\n @media (min-width: @grid-float-breakpoint) {\n margin-right: 0;\n margin-left: 0;\n }\n }\n}\n\n\n//\n// Navbar alignment options\n//\n// Display the navbar across the entirety of the page or fixed it to the top or\n// bottom of the page.\n\n// Static top (unfixed, but 100% wide) navbar\n.navbar-static-top {\n z-index: @zindex-navbar;\n border-width: 0 0 1px;\n\n @media (min-width: @grid-float-breakpoint) {\n border-radius: 0;\n }\n}\n\n// Fix the top/bottom navbars when screen real estate supports it\n.navbar-fixed-top,\n.navbar-fixed-bottom {\n position: fixed;\n right: 0;\n left: 0;\n z-index: @zindex-navbar-fixed;\n .translate3d(0, 0, 0);\n\n // Undo the rounded corners\n @media (min-width: @grid-float-breakpoint) {\n border-radius: 0;\n }\n}\n.navbar-fixed-top {\n top: 0;\n border-width: 0 0 1px;\n}\n.navbar-fixed-bottom {\n bottom: 0;\n margin-bottom: 0; // override .navbar defaults\n border-width: 1px 0 0;\n}\n\n\n// Brand/project name\n\n.navbar-brand {\n float: left;\n padding: @navbar-padding-vertical @navbar-padding-horizontal;\n font-size: @font-size-large;\n line-height: @line-height-computed;\n height: @navbar-height;\n\n &:hover,\n &:focus {\n text-decoration: none;\n }\n\n @media (min-width: @grid-float-breakpoint) {\n .navbar > .container &,\n .navbar > .container-fluid & {\n margin-left: -@navbar-padding-horizontal;\n }\n }\n}\n\n\n// Navbar toggle\n//\n// Custom button for toggling the `.navbar-collapse`, powered by the collapse\n// JavaScript plugin.\n\n.navbar-toggle {\n position: relative;\n float: right;\n margin-right: @navbar-padding-horizontal;\n padding: 9px 10px;\n .navbar-vertical-align(34px);\n background-color: transparent;\n background-image: none; // Reset unusual Firefox-on-Android default style; see https://github.com/necolas/normalize.css/issues/214\n border: 1px solid transparent;\n border-radius: @border-radius-base;\n\n // We remove the `outline` here, but later compensate by attaching `:hover`\n // styles to `:focus`.\n &:focus {\n outline: 0;\n }\n\n // Bars\n .icon-bar {\n display: block;\n width: 22px;\n height: 2px;\n border-radius: 1px;\n }\n .icon-bar + .icon-bar {\n margin-top: 4px;\n }\n\n @media (min-width: @grid-float-breakpoint) {\n display: none;\n }\n}\n\n\n// Navbar nav links\n//\n// Builds on top of the `.nav` components with its own modifier class to make\n// the nav the full height of the horizontal nav (above 768px).\n\n.navbar-nav {\n margin: (@navbar-padding-vertical / 2) -@navbar-padding-horizontal;\n\n > li > a {\n padding-top: 10px;\n padding-bottom: 10px;\n line-height: @line-height-computed;\n }\n\n @media (max-width: @grid-float-breakpoint-max) {\n // Dropdowns get custom display when collapsed\n .open .dropdown-menu {\n position: static;\n float: none;\n width: auto;\n margin-top: 0;\n background-color: transparent;\n border: 0;\n box-shadow: none;\n > li > a,\n .dropdown-header {\n padding: 5px 15px 5px 25px;\n }\n > li > a {\n line-height: @line-height-computed;\n &:hover,\n &:focus {\n background-image: none;\n }\n }\n }\n }\n\n // Uncollapse the nav\n @media (min-width: @grid-float-breakpoint) {\n float: left;\n margin: 0;\n\n > li {\n float: left;\n > a {\n padding-top: @navbar-padding-vertical;\n padding-bottom: @navbar-padding-vertical;\n }\n }\n\n &.navbar-right:last-child {\n margin-right: -@navbar-padding-horizontal;\n }\n }\n}\n\n\n// Component alignment\n//\n// Repurpose the pull utilities as their own navbar utilities to avoid specificity\n// issues with parents and chaining. Only do this when the navbar is uncollapsed\n// though so that navbar contents properly stack and align in mobile.\n\n@media (min-width: @grid-float-breakpoint) {\n .navbar-left { .pull-left(); }\n .navbar-right { .pull-right(); }\n}\n\n\n// Navbar form\n//\n// Extension of the `.form-inline` with some extra flavor for optimum display in\n// our navbars.\n\n.navbar-form {\n margin-left: -@navbar-padding-horizontal;\n margin-right: -@navbar-padding-horizontal;\n padding: 10px @navbar-padding-horizontal;\n border-top: 1px solid transparent;\n border-bottom: 1px solid transparent;\n @shadow: inset 0 1px 0 rgba(255,255,255,.1), 0 1px 0 rgba(255,255,255,.1);\n .box-shadow(@shadow);\n\n // Mixin behavior for optimum display\n .form-inline();\n\n .form-group {\n @media (max-width: @grid-float-breakpoint-max) {\n margin-bottom: 5px;\n }\n }\n\n // Vertically center in expanded, horizontal navbar\n .navbar-vertical-align(@input-height-base);\n\n // Undo 100% width for pull classes\n @media (min-width: @grid-float-breakpoint) {\n width: auto;\n border: 0;\n margin-left: 0;\n margin-right: 0;\n padding-top: 0;\n padding-bottom: 0;\n .box-shadow(none);\n\n // Outdent the form if last child to line up with content down the page\n &.navbar-right:last-child {\n margin-right: -@navbar-padding-horizontal;\n }\n }\n}\n\n\n// Dropdown menus\n\n// Menu position and menu carets\n.navbar-nav > li > .dropdown-menu {\n margin-top: 0;\n .border-top-radius(0);\n}\n// Menu position and menu caret support for dropups via extra dropup class\n.navbar-fixed-bottom .navbar-nav > li > .dropdown-menu {\n .border-bottom-radius(0);\n}\n\n\n// Buttons in navbars\n//\n// Vertically center a button within a navbar (when *not* in a form).\n\n.navbar-btn {\n .navbar-vertical-align(@input-height-base);\n\n &.btn-sm {\n .navbar-vertical-align(@input-height-small);\n }\n &.btn-xs {\n .navbar-vertical-align(22);\n }\n}\n\n\n// Text in navbars\n//\n// Add a class to make any element properly align itself vertically within the navbars.\n\n.navbar-text {\n .navbar-vertical-align(@line-height-computed);\n\n @media (min-width: @grid-float-breakpoint) {\n float: left;\n margin-left: @navbar-padding-horizontal;\n margin-right: @navbar-padding-horizontal;\n\n // Outdent the form if last child to line up with content down the page\n &.navbar-right:last-child {\n margin-right: 0;\n }\n }\n}\n\n// Alternate navbars\n// --------------------------------------------------\n\n// Default navbar\n.navbar-default {\n background-color: @navbar-default-bg;\n border-color: @navbar-default-border;\n\n .navbar-brand {\n color: @navbar-default-brand-color;\n &:hover,\n &:focus {\n color: @navbar-default-brand-hover-color;\n background-color: @navbar-default-brand-hover-bg;\n }\n }\n\n .navbar-text {\n color: @navbar-default-color;\n }\n\n .navbar-nav {\n > li > a {\n color: @navbar-default-link-color;\n\n &:hover,\n &:focus {\n color: @navbar-default-link-hover-color;\n background-color: @navbar-default-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-active-color;\n background-color: @navbar-default-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-disabled-color;\n background-color: @navbar-default-link-disabled-bg;\n }\n }\n }\n\n .navbar-toggle {\n border-color: @navbar-default-toggle-border-color;\n &:hover,\n &:focus {\n background-color: @navbar-default-toggle-hover-bg;\n }\n .icon-bar {\n background-color: @navbar-default-toggle-icon-bar-bg;\n }\n }\n\n .navbar-collapse,\n .navbar-form {\n border-color: @navbar-default-border;\n }\n\n // Dropdown menu items\n .navbar-nav {\n // Remove background color from open dropdown\n > .open > a {\n &,\n &:hover,\n &:focus {\n background-color: @navbar-default-link-active-bg;\n color: @navbar-default-link-active-color;\n }\n }\n\n @media (max-width: @grid-float-breakpoint-max) {\n // Dropdowns get custom display when collapsed\n .open .dropdown-menu {\n > li > a {\n color: @navbar-default-link-color;\n &:hover,\n &:focus {\n color: @navbar-default-link-hover-color;\n background-color: @navbar-default-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-active-color;\n background-color: @navbar-default-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-default-link-disabled-color;\n background-color: @navbar-default-link-disabled-bg;\n }\n }\n }\n }\n }\n\n\n // Links in navbars\n //\n // Add a class to ensure links outside the navbar nav are colored correctly.\n\n .navbar-link {\n color: @navbar-default-link-color;\n &:hover {\n color: @navbar-default-link-hover-color;\n }\n }\n\n .btn-link {\n color: @navbar-default-link-color;\n &:hover,\n &:focus {\n color: @navbar-default-link-hover-color;\n }\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus {\n color: @navbar-default-link-disabled-color;\n }\n }\n }\n}\n\n// Inverse navbar\n\n.navbar-inverse {\n background-color: @navbar-inverse-bg;\n border-color: @navbar-inverse-border;\n\n .navbar-brand {\n color: @navbar-inverse-brand-color;\n &:hover,\n &:focus {\n color: @navbar-inverse-brand-hover-color;\n background-color: @navbar-inverse-brand-hover-bg;\n }\n }\n\n .navbar-text {\n color: @navbar-inverse-color;\n }\n\n .navbar-nav {\n > li > a {\n color: @navbar-inverse-link-color;\n\n &:hover,\n &:focus {\n color: @navbar-inverse-link-hover-color;\n background-color: @navbar-inverse-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-active-color;\n background-color: @navbar-inverse-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-disabled-color;\n background-color: @navbar-inverse-link-disabled-bg;\n }\n }\n }\n\n // Darken the responsive nav toggle\n .navbar-toggle {\n border-color: @navbar-inverse-toggle-border-color;\n &:hover,\n &:focus {\n background-color: @navbar-inverse-toggle-hover-bg;\n }\n .icon-bar {\n background-color: @navbar-inverse-toggle-icon-bar-bg;\n }\n }\n\n .navbar-collapse,\n .navbar-form {\n border-color: darken(@navbar-inverse-bg, 7%);\n }\n\n // Dropdowns\n .navbar-nav {\n > .open > a {\n &,\n &:hover,\n &:focus {\n background-color: @navbar-inverse-link-active-bg;\n color: @navbar-inverse-link-active-color;\n }\n }\n\n @media (max-width: @grid-float-breakpoint-max) {\n // Dropdowns get custom display\n .open .dropdown-menu {\n > .dropdown-header {\n border-color: @navbar-inverse-border;\n }\n .divider {\n background-color: @navbar-inverse-border;\n }\n > li > a {\n color: @navbar-inverse-link-color;\n &:hover,\n &:focus {\n color: @navbar-inverse-link-hover-color;\n background-color: @navbar-inverse-link-hover-bg;\n }\n }\n > .active > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-active-color;\n background-color: @navbar-inverse-link-active-bg;\n }\n }\n > .disabled > a {\n &,\n &:hover,\n &:focus {\n color: @navbar-inverse-link-disabled-color;\n background-color: @navbar-inverse-link-disabled-bg;\n }\n }\n }\n }\n }\n\n .navbar-link {\n color: @navbar-inverse-link-color;\n &:hover {\n color: @navbar-inverse-link-hover-color;\n }\n }\n\n .btn-link {\n color: @navbar-inverse-link-color;\n &:hover,\n &:focus {\n color: @navbar-inverse-link-hover-color;\n }\n &[disabled],\n fieldset[disabled] & {\n &:hover,\n &:focus {\n color: @navbar-inverse-link-disabled-color;\n }\n }\n }\n}\n","// Navbar vertical align\n//\n// Vertically center elements in the navbar.\n// Example: an element has a height of 30px, so write out `.navbar-vertical-align(30px);` to calculate the appropriate top margin.\n\n.navbar-vertical-align(@element-height) {\n margin-top: ((@navbar-height - @element-height) / 2);\n margin-bottom: ((@navbar-height - @element-height) / 2);\n}\n","//\n// Utility classes\n// --------------------------------------------------\n\n\n// Floats\n// -------------------------\n\n.clearfix {\n .clearfix();\n}\n.center-block {\n .center-block();\n}\n.pull-right {\n float: right !important;\n}\n.pull-left {\n float: left !important;\n}\n\n\n// Toggling content\n// -------------------------\n\n// Note: Deprecated .hide in favor of .hidden or .sr-only (as appropriate) in v3.0.1\n.hide {\n display: none !important;\n}\n.show {\n display: block !important;\n}\n.invisible {\n visibility: hidden;\n}\n.text-hide {\n .text-hide();\n}\n\n\n// Hide from screenreaders and browsers\n//\n// Credit: HTML5 Boilerplate\n\n.hidden {\n display: none !important;\n visibility: hidden !important;\n}\n\n\n// For Affix plugin\n// -------------------------\n\n.affix {\n position: fixed;\n .translate3d(0, 0, 0);\n}\n","//\n// Breadcrumbs\n// --------------------------------------------------\n\n\n.breadcrumb {\n padding: @breadcrumb-padding-vertical @breadcrumb-padding-horizontal;\n margin-bottom: @line-height-computed;\n list-style: none;\n background-color: @breadcrumb-bg;\n border-radius: @border-radius-base;\n\n > li {\n display: inline-block;\n\n + li:before {\n content: \"@{breadcrumb-separator}\\00a0\"; // Unicode space added since inline-block means non-collapsing white-space\n padding: 0 5px;\n color: @breadcrumb-color;\n }\n }\n\n > .active {\n color: @breadcrumb-active-color;\n }\n}\n","//\n// Pagination (multiple pages)\n// --------------------------------------------------\n.pagination {\n display: inline-block;\n padding-left: 0;\n margin: @line-height-computed 0;\n border-radius: @border-radius-base;\n\n > li {\n display: inline; // Remove list-style and block-level defaults\n > a,\n > span {\n position: relative;\n float: left; // Collapse white-space\n padding: @padding-base-vertical @padding-base-horizontal;\n line-height: @line-height-base;\n text-decoration: none;\n color: @pagination-color;\n background-color: @pagination-bg;\n border: 1px solid @pagination-border;\n margin-left: -1px;\n }\n &:first-child {\n > a,\n > span {\n margin-left: 0;\n .border-left-radius(@border-radius-base);\n }\n }\n &:last-child {\n > a,\n > span {\n .border-right-radius(@border-radius-base);\n }\n }\n }\n\n > li > a,\n > li > span {\n &:hover,\n &:focus {\n color: @pagination-hover-color;\n background-color: @pagination-hover-bg;\n border-color: @pagination-hover-border;\n }\n }\n\n > .active > a,\n > .active > span {\n &,\n &:hover,\n &:focus {\n z-index: 2;\n color: @pagination-active-color;\n background-color: @pagination-active-bg;\n border-color: @pagination-active-border;\n cursor: default;\n }\n }\n\n > .disabled {\n > span,\n > span:hover,\n > span:focus,\n > a,\n > a:hover,\n > a:focus {\n color: @pagination-disabled-color;\n background-color: @pagination-disabled-bg;\n border-color: @pagination-disabled-border;\n cursor: not-allowed;\n }\n }\n}\n\n// Sizing\n// --------------------------------------------------\n\n// Large\n.pagination-lg {\n .pagination-size(@padding-large-vertical; @padding-large-horizontal; @font-size-large; @border-radius-large);\n}\n\n// Small\n.pagination-sm {\n .pagination-size(@padding-small-vertical; @padding-small-horizontal; @font-size-small; @border-radius-small);\n}\n","// Pagination\n\n.pagination-size(@padding-vertical; @padding-horizontal; @font-size; @border-radius) {\n > li {\n > a,\n > span {\n padding: @padding-vertical @padding-horizontal;\n font-size: @font-size;\n }\n &:first-child {\n > a,\n > span {\n .border-left-radius(@border-radius);\n }\n }\n &:last-child {\n > a,\n > span {\n .border-right-radius(@border-radius);\n }\n }\n }\n}\n","//\n// Pager pagination\n// --------------------------------------------------\n\n\n.pager {\n padding-left: 0;\n margin: @line-height-computed 0;\n list-style: none;\n text-align: center;\n &:extend(.clearfix all);\n li {\n display: inline;\n > a,\n > span {\n display: inline-block;\n padding: 5px 14px;\n background-color: @pager-bg;\n border: 1px solid @pager-border;\n border-radius: @pager-border-radius;\n }\n\n > a:hover,\n > a:focus {\n text-decoration: none;\n background-color: @pager-hover-bg;\n }\n }\n\n .next {\n > a,\n > span {\n float: right;\n }\n }\n\n .previous {\n > a,\n > span {\n float: left;\n }\n }\n\n .disabled {\n > a,\n > a:hover,\n > a:focus,\n > span {\n color: @pager-disabled-color;\n background-color: @pager-bg;\n cursor: not-allowed;\n }\n }\n\n}\n","//\n// Labels\n// --------------------------------------------------\n\n.label {\n display: inline;\n padding: .2em .6em .3em;\n font-size: 75%;\n font-weight: bold;\n line-height: 1;\n color: @label-color;\n text-align: center;\n white-space: nowrap;\n vertical-align: baseline;\n border-radius: .25em;\n\n // Add hover effects, but only for links\n a& {\n &:hover,\n &:focus {\n color: @label-link-hover-color;\n text-decoration: none;\n cursor: pointer;\n }\n }\n\n // Empty labels collapse automatically (not available in IE8)\n &:empty {\n display: none;\n }\n\n // Quick fix for labels in buttons\n .btn & {\n position: relative;\n top: -1px;\n }\n}\n\n// Colors\n// Contextual variations (linked labels get darker on :hover)\n\n.label-default {\n .label-variant(@label-default-bg);\n}\n\n.label-primary {\n .label-variant(@label-primary-bg);\n}\n\n.label-success {\n .label-variant(@label-success-bg);\n}\n\n.label-info {\n .label-variant(@label-info-bg);\n}\n\n.label-warning {\n .label-variant(@label-warning-bg);\n}\n\n.label-danger {\n .label-variant(@label-danger-bg);\n}\n","// Labels\n\n.label-variant(@color) {\n background-color: @color;\n \n &[href] {\n &:hover,\n &:focus {\n background-color: darken(@color, 10%);\n }\n }\n}\n","//\n// Badges\n// --------------------------------------------------\n\n\n// Base class\n.badge {\n display: inline-block;\n min-width: 10px;\n padding: 3px 7px;\n font-size: @font-size-small;\n font-weight: @badge-font-weight;\n color: @badge-color;\n line-height: @badge-line-height;\n vertical-align: baseline;\n white-space: nowrap;\n text-align: center;\n background-color: @badge-bg;\n border-radius: @badge-border-radius;\n\n // Empty badges collapse automatically (not available in IE8)\n &:empty {\n display: none;\n }\n\n // Quick fix for badges in buttons\n .btn & {\n position: relative;\n top: -1px;\n }\n .btn-xs & {\n top: 0;\n padding: 1px 5px;\n }\n\n // Hover state, but only for links\n a& {\n &:hover,\n &:focus {\n color: @badge-link-hover-color;\n text-decoration: none;\n cursor: pointer;\n }\n }\n\n // Account for badges in navs\n a.list-group-item.active > &,\n .nav-pills > .active > a > & {\n color: @badge-active-color;\n background-color: @badge-active-bg;\n }\n .nav-pills > li > a > & {\n margin-left: 3px;\n }\n}\n","//\n// Jumbotron\n// --------------------------------------------------\n\n\n.jumbotron {\n padding: @jumbotron-padding;\n margin-bottom: @jumbotron-padding;\n color: @jumbotron-color;\n background-color: @jumbotron-bg;\n\n h1,\n .h1 {\n color: @jumbotron-heading-color;\n }\n p {\n margin-bottom: (@jumbotron-padding / 2);\n font-size: @jumbotron-font-size;\n font-weight: 200;\n }\n\n > hr {\n border-top-color: darken(@jumbotron-bg, 10%);\n }\n\n .container & {\n border-radius: @border-radius-large; // Only round corners at higher resolutions if contained in a container\n }\n\n .container {\n max-width: 100%;\n }\n\n @media screen and (min-width: @screen-sm-min) {\n padding-top: (@jumbotron-padding * 1.6);\n padding-bottom: (@jumbotron-padding * 1.6);\n\n .container & {\n padding-left: (@jumbotron-padding * 2);\n padding-right: (@jumbotron-padding * 2);\n }\n\n h1,\n .h1 {\n font-size: (@font-size-base * 4.5);\n }\n }\n}\n","//\n// Thumbnails\n// --------------------------------------------------\n\n\n// Mixin and adjust the regular image class\n.thumbnail {\n display: block;\n padding: @thumbnail-padding;\n margin-bottom: @line-height-computed;\n line-height: @line-height-base;\n background-color: @thumbnail-bg;\n border: 1px solid @thumbnail-border;\n border-radius: @thumbnail-border-radius;\n .transition(all .2s ease-in-out);\n\n > img,\n a > img {\n &:extend(.img-responsive);\n margin-left: auto;\n margin-right: auto;\n }\n\n // Add a hover state for linked versions only\n a&:hover,\n a&:focus,\n a&.active {\n border-color: @link-color;\n }\n\n // Image captions\n .caption {\n padding: @thumbnail-caption-padding;\n color: @thumbnail-caption-color;\n }\n}\n","//\n// Alerts\n// --------------------------------------------------\n\n\n// Base styles\n// -------------------------\n\n.alert {\n padding: @alert-padding;\n margin-bottom: @line-height-computed;\n border: 1px solid transparent;\n border-radius: @alert-border-radius;\n\n // Headings for larger alerts\n h4 {\n margin-top: 0;\n // Specified for the h4 to prevent conflicts of changing @headings-color\n color: inherit;\n }\n // Provide class for links that match alerts\n .alert-link {\n font-weight: @alert-link-font-weight;\n }\n\n // Improve alignment and spacing of inner content\n > p,\n > ul {\n margin-bottom: 0;\n }\n > p + p {\n margin-top: 5px;\n }\n}\n\n// Dismissible alerts\n//\n// Expand the right padding and account for the close button's positioning.\n\n.alert-dismissable, // The misspelled .alert-dismissable was deprecated in 3.2.0.\n.alert-dismissible {\n padding-right: (@alert-padding + 20);\n\n // Adjust close link position\n .close {\n position: relative;\n top: -2px;\n right: -21px;\n color: inherit;\n }\n}\n\n// Alternate styles\n//\n// Generate contextual modifier classes for colorizing the alert.\n\n.alert-success {\n .alert-variant(@alert-success-bg; @alert-success-border; @alert-success-text);\n}\n.alert-info {\n .alert-variant(@alert-info-bg; @alert-info-border; @alert-info-text);\n}\n.alert-warning {\n .alert-variant(@alert-warning-bg; @alert-warning-border; @alert-warning-text);\n}\n.alert-danger {\n .alert-variant(@alert-danger-bg; @alert-danger-border; @alert-danger-text);\n}\n","// Alerts\n\n.alert-variant(@background; @border; @text-color) {\n background-color: @background;\n border-color: @border;\n color: @text-color;\n\n hr {\n border-top-color: darken(@border, 5%);\n }\n .alert-link {\n color: darken(@text-color, 10%);\n }\n}\n","//\n// Progress bars\n// --------------------------------------------------\n\n\n// Bar animations\n// -------------------------\n\n// WebKit\n@-webkit-keyframes progress-bar-stripes {\n from { background-position: 40px 0; }\n to { background-position: 0 0; }\n}\n\n// Spec and IE10+\n@keyframes progress-bar-stripes {\n from { background-position: 40px 0; }\n to { background-position: 0 0; }\n}\n\n\n\n// Bar itself\n// -------------------------\n\n// Outer container\n.progress {\n overflow: hidden;\n height: @line-height-computed;\n margin-bottom: @line-height-computed;\n background-color: @progress-bg;\n border-radius: @border-radius-base;\n .box-shadow(inset 0 1px 2px rgba(0,0,0,.1));\n}\n\n// Bar of progress\n.progress-bar {\n float: left;\n width: 0%;\n height: 100%;\n font-size: @font-size-small;\n line-height: @line-height-computed;\n color: @progress-bar-color;\n text-align: center;\n background-color: @progress-bar-bg;\n .box-shadow(inset 0 -1px 0 rgba(0,0,0,.15));\n .transition(width .6s ease);\n}\n\n// Striped bars\n//\n// `.progress-striped .progress-bar` is deprecated as of v3.2.0 in favor of the\n// `.progress-bar-striped` class, which you just add to an existing\n// `.progress-bar`.\n.progress-striped .progress-bar,\n.progress-bar-striped {\n #gradient > .striped();\n background-size: 40px 40px;\n}\n\n// Call animation for the active one\n//\n// `.progress.active .progress-bar` is deprecated as of v3.2.0 in favor of the\n// `.progress-bar.active` approach.\n.progress.active .progress-bar,\n.progress-bar.active {\n .animation(progress-bar-stripes 2s linear infinite);\n}\n\n// Account for lower percentages\n.progress-bar {\n &[aria-valuenow=\"1\"],\n &[aria-valuenow=\"2\"] {\n min-width: 30px;\n }\n\n &[aria-valuenow=\"0\"] {\n color: @gray-light;\n min-width: 30px;\n background-color: transparent;\n background-image: none;\n box-shadow: none;\n }\n}\n\n\n\n// Variations\n// -------------------------\n\n.progress-bar-success {\n .progress-bar-variant(@progress-bar-success-bg);\n}\n\n.progress-bar-info {\n .progress-bar-variant(@progress-bar-info-bg);\n}\n\n.progress-bar-warning {\n .progress-bar-variant(@progress-bar-warning-bg);\n}\n\n.progress-bar-danger {\n .progress-bar-variant(@progress-bar-danger-bg);\n}\n","// Gradients\n\n#gradient {\n\n // Horizontal gradient, from left to right\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .horizontal(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(left, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to right, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n // Vertical gradient, from top to bottom\n //\n // Creates two color stops, start and end, by specifying a color and position for each color stop.\n // Color stops are not available in IE9 and below.\n .vertical(@start-color: #555; @end-color: #333; @start-percent: 0%; @end-percent: 100%) {\n background-image: -webkit-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(top, @start-color @start-percent, @end-color @end-percent); // Opera 12\n background-image: linear-gradient(to bottom, @start-color @start-percent, @end-color @end-percent); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n background-repeat: repeat-x;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down\n }\n\n .directional(@start-color: #555; @end-color: #333; @deg: 45deg) {\n background-repeat: repeat-x;\n background-image: -webkit-linear-gradient(@deg, @start-color, @end-color); // Safari 5.1-6, Chrome 10+\n background-image: -o-linear-gradient(@deg, @start-color, @end-color); // Opera 12\n background-image: linear-gradient(@deg, @start-color, @end-color); // Standard, IE10, Firefox 16+, Opera 12.10+, Safari 7+, Chrome 26+\n }\n .horizontal-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(left, @start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(to right, @start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=1)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .vertical-three-colors(@start-color: #00b3ee; @mid-color: #7a43b6; @color-stop: 50%; @end-color: #c3325f) {\n background-image: -webkit-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: -o-linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-image: linear-gradient(@start-color, @mid-color @color-stop, @end-color);\n background-repeat: no-repeat;\n filter: e(%(\"progid:DXImageTransform.Microsoft.gradient(startColorstr='%d', endColorstr='%d', GradientType=0)\",argb(@start-color),argb(@end-color))); // IE9 and down, gets no color-stop at all for proper fallback\n }\n .radial(@inner-color: #555; @outer-color: #333) {\n background-image: -webkit-radial-gradient(circle, @inner-color, @outer-color);\n background-image: radial-gradient(circle, @inner-color, @outer-color);\n background-repeat: no-repeat;\n }\n .striped(@color: rgba(255,255,255,.15); @angle: 45deg) {\n background-image: -webkit-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: -o-linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n background-image: linear-gradient(@angle, @color 25%, transparent 25%, transparent 50%, @color 50%, @color 75%, transparent 75%, transparent);\n }\n}\n","// Progress bars\n\n.progress-bar-variant(@color) {\n background-color: @color;\n\n // Deprecated parent class requirement as of v3.2.0\n .progress-striped & {\n #gradient > .striped();\n }\n}\n","// Media objects\n// Source: http://stubbornella.org/content/?p=497\n// --------------------------------------------------\n\n\n// Common styles\n// -------------------------\n\n// Clear the floats\n.media,\n.media-body {\n overflow: hidden;\n zoom: 1;\n}\n\n// Proper spacing between instances of .media\n.media,\n.media .media {\n margin-top: 15px;\n}\n.media:first-child {\n margin-top: 0;\n}\n\n// For images and videos, set to block\n.media-object {\n display: block;\n}\n\n// Reset margins on headings for tighter default spacing\n.media-heading {\n margin: 0 0 5px;\n}\n\n\n// Media image alignment\n// -------------------------\n\n.media {\n > .pull-left {\n margin-right: 10px;\n }\n > .pull-right {\n margin-left: 10px;\n }\n}\n\n\n// Media list variation\n// -------------------------\n\n// Undo default ul/ol styles\n.media-list {\n padding-left: 0;\n list-style: none;\n}\n","//\n// List groups\n// --------------------------------------------------\n\n\n// Base class\n//\n// Easily usable on <ul>, <ol>, or <div>.\n\n.list-group {\n // No need to set list-style: none; since .list-group-item is block level\n margin-bottom: 20px;\n padding-left: 0; // reset padding because ul and ol\n}\n\n\n// Individual list items\n//\n// Use on `li`s or `div`s within the `.list-group` parent.\n\n.list-group-item {\n position: relative;\n display: block;\n padding: 10px 15px;\n // Place the border on the list items and negative margin up for better styling\n margin-bottom: -1px;\n background-color: @list-group-bg;\n border: 1px solid @list-group-border;\n\n // Round the first and last items\n &:first-child {\n .border-top-radius(@list-group-border-radius);\n }\n &:last-child {\n margin-bottom: 0;\n .border-bottom-radius(@list-group-border-radius);\n }\n\n // Align badges within list items\n > .badge {\n float: right;\n }\n > .badge + .badge {\n margin-right: 5px;\n }\n}\n\n\n// Linked list items\n//\n// Use anchor elements instead of `li`s or `div`s to create linked list items.\n// Includes an extra `.active` modifier class for showing selected items.\n\na.list-group-item {\n color: @list-group-link-color;\n\n .list-group-item-heading {\n color: @list-group-link-heading-color;\n }\n\n // Hover state\n &:hover,\n &:focus {\n text-decoration: none;\n color: @list-group-link-hover-color;\n background-color: @list-group-hover-bg;\n }\n}\n\n.list-group-item {\n // Disabled state\n &.disabled,\n &.disabled:hover,\n &.disabled:focus {\n background-color: @list-group-disabled-bg;\n color: @list-group-disabled-color;\n\n // Force color to inherit for custom content\n .list-group-item-heading {\n color: inherit;\n }\n .list-group-item-text {\n color: @list-group-disabled-text-color;\n }\n }\n\n // Active class on item itself, not parent\n &.active,\n &.active:hover,\n &.active:focus {\n z-index: 2; // Place active items above their siblings for proper border styling\n color: @list-group-active-color;\n background-color: @list-group-active-bg;\n border-color: @list-group-active-border;\n\n // Force color to inherit for custom content\n .list-group-item-heading,\n .list-group-item-heading > small,\n .list-group-item-heading > .small {\n color: inherit;\n }\n .list-group-item-text {\n color: @list-group-active-text-color;\n }\n }\n}\n\n\n// Contextual variants\n//\n// Add modifier classes to change text and background color on individual items.\n// Organizationally, this must come after the `:hover` states.\n\n.list-group-item-variant(success; @state-success-bg; @state-success-text);\n.list-group-item-variant(info; @state-info-bg; @state-info-text);\n.list-group-item-variant(warning; @state-warning-bg; @state-warning-text);\n.list-group-item-variant(danger; @state-danger-bg; @state-danger-text);\n\n\n// Custom content options\n//\n// Extra classes for creating well-formatted content within `.list-group-item`s.\n\n.list-group-item-heading {\n margin-top: 0;\n margin-bottom: 5px;\n}\n.list-group-item-text {\n margin-bottom: 0;\n line-height: 1.3;\n}\n","// List Groups\n\n.list-group-item-variant(@state; @background; @color) {\n .list-group-item-@{state} {\n color: @color;\n background-color: @background;\n\n a& {\n color: @color;\n\n .list-group-item-heading {\n color: inherit;\n }\n\n &:hover,\n &:focus {\n color: @color;\n background-color: darken(@background, 5%);\n }\n &.active,\n &.active:hover,\n &.active:focus {\n color: #fff;\n background-color: @color;\n border-color: @color;\n }\n }\n }\n}\n","//\n// Panels\n// --------------------------------------------------\n\n\n// Base class\n.panel {\n margin-bottom: @line-height-computed;\n background-color: @panel-bg;\n border: 1px solid transparent;\n border-radius: @panel-border-radius;\n .box-shadow(0 1px 1px rgba(0,0,0,.05));\n}\n\n// Panel contents\n.panel-body {\n padding: @panel-body-padding;\n &:extend(.clearfix all);\n}\n\n// Optional heading\n.panel-heading {\n padding: @panel-heading-padding;\n border-bottom: 1px solid transparent;\n .border-top-radius((@panel-border-radius - 1));\n\n > .dropdown .dropdown-toggle {\n color: inherit;\n }\n}\n\n// Within heading, strip any `h*` tag of its default margins for spacing.\n.panel-title {\n margin-top: 0;\n margin-bottom: 0;\n font-size: ceil((@font-size-base * 1.125));\n color: inherit;\n\n > a {\n color: inherit;\n }\n}\n\n// Optional footer (stays gray in every modifier class)\n.panel-footer {\n padding: @panel-footer-padding;\n background-color: @panel-footer-bg;\n border-top: 1px solid @panel-inner-border;\n .border-bottom-radius((@panel-border-radius - 1));\n}\n\n\n// List groups in panels\n//\n// By default, space out list group content from panel headings to account for\n// any kind of custom content between the two.\n\n.panel {\n > .list-group {\n margin-bottom: 0;\n\n .list-group-item {\n border-width: 1px 0;\n border-radius: 0;\n }\n\n // Add border top radius for first one\n &:first-child {\n .list-group-item:first-child {\n border-top: 0;\n .border-top-radius((@panel-border-radius - 1));\n }\n }\n // Add border bottom radius for last one\n &:last-child {\n .list-group-item:last-child {\n border-bottom: 0;\n .border-bottom-radius((@panel-border-radius - 1));\n }\n }\n }\n}\n// Collapse space between when there's no additional content.\n.panel-heading + .list-group {\n .list-group-item:first-child {\n border-top-width: 0;\n }\n}\n.list-group + .panel-footer {\n border-top-width: 0;\n}\n\n// Tables in panels\n//\n// Place a non-bordered `.table` within a panel (not within a `.panel-body`) and\n// watch it go full width.\n\n.panel {\n > .table,\n > .table-responsive > .table,\n > .panel-collapse > .table {\n margin-bottom: 0;\n }\n // Add border top radius for first one\n > .table:first-child,\n > .table-responsive:first-child > .table:first-child {\n .border-top-radius((@panel-border-radius - 1));\n\n > thead:first-child,\n > tbody:first-child {\n > tr:first-child {\n td:first-child,\n th:first-child {\n border-top-left-radius: (@panel-border-radius - 1);\n }\n td:last-child,\n th:last-child {\n border-top-right-radius: (@panel-border-radius - 1);\n }\n }\n }\n }\n // Add border bottom radius for last one\n > .table:last-child,\n > .table-responsive:last-child > .table:last-child {\n .border-bottom-radius((@panel-border-radius - 1));\n\n > tbody:last-child,\n > tfoot:last-child {\n > tr:last-child {\n td:first-child,\n th:first-child {\n border-bottom-left-radius: (@panel-border-radius - 1);\n }\n td:last-child,\n th:last-child {\n border-bottom-right-radius: (@panel-border-radius - 1);\n }\n }\n }\n }\n > .panel-body + .table,\n > .panel-body + .table-responsive {\n border-top: 1px solid @table-border-color;\n }\n > .table > tbody:first-child > tr:first-child th,\n > .table > tbody:first-child > tr:first-child td {\n border-top: 0;\n }\n > .table-bordered,\n > .table-responsive > .table-bordered {\n border: 0;\n > thead,\n > tbody,\n > tfoot {\n > tr {\n > th:first-child,\n > td:first-child {\n border-left: 0;\n }\n > th:last-child,\n > td:last-child {\n border-right: 0;\n }\n }\n }\n > thead,\n > tbody {\n > tr:first-child {\n > td,\n > th {\n border-bottom: 0;\n }\n }\n }\n > tbody,\n > tfoot {\n > tr:last-child {\n > td,\n > th {\n border-bottom: 0;\n }\n }\n }\n }\n > .table-responsive {\n border: 0;\n margin-bottom: 0;\n }\n}\n\n\n// Collapsable panels (aka, accordion)\n//\n// Wrap a series of panels in `.panel-group` to turn them into an accordion with\n// the help of our collapse JavaScript plugin.\n\n.panel-group {\n margin-bottom: @line-height-computed;\n\n // Tighten up margin so it's only between panels\n .panel {\n margin-bottom: 0;\n border-radius: @panel-border-radius;\n + .panel {\n margin-top: 5px;\n }\n }\n\n .panel-heading {\n border-bottom: 0;\n + .panel-collapse > .panel-body {\n border-top: 1px solid @panel-inner-border;\n }\n }\n .panel-footer {\n border-top: 0;\n + .panel-collapse .panel-body {\n border-bottom: 1px solid @panel-inner-border;\n }\n }\n}\n\n\n// Contextual variations\n.panel-default {\n .panel-variant(@panel-default-border; @panel-default-text; @panel-default-heading-bg; @panel-default-border);\n}\n.panel-primary {\n .panel-variant(@panel-primary-border; @panel-primary-text; @panel-primary-heading-bg; @panel-primary-border);\n}\n.panel-success {\n .panel-variant(@panel-success-border; @panel-success-text; @panel-success-heading-bg; @panel-success-border);\n}\n.panel-info {\n .panel-variant(@panel-info-border; @panel-info-text; @panel-info-heading-bg; @panel-info-border);\n}\n.panel-warning {\n .panel-variant(@panel-warning-border; @panel-warning-text; @panel-warning-heading-bg; @panel-warning-border);\n}\n.panel-danger {\n .panel-variant(@panel-danger-border; @panel-danger-text; @panel-danger-heading-bg; @panel-danger-border);\n}\n","// Panels\n\n.panel-variant(@border; @heading-text-color; @heading-bg-color; @heading-border) {\n border-color: @border;\n\n & > .panel-heading {\n color: @heading-text-color;\n background-color: @heading-bg-color;\n border-color: @heading-border;\n\n + .panel-collapse > .panel-body {\n border-top-color: @border;\n }\n .badge {\n color: @heading-bg-color;\n background-color: @heading-text-color;\n }\n }\n & > .panel-footer {\n + .panel-collapse > .panel-body {\n border-bottom-color: @border;\n }\n }\n}\n","// Embeds responsive\n//\n// Credit: Nicolas Gallagher and SUIT CSS.\n\n.embed-responsive {\n position: relative;\n display: block;\n height: 0;\n padding: 0;\n overflow: hidden;\n\n .embed-responsive-item,\n iframe,\n embed,\n object {\n position: absolute;\n top: 0;\n left: 0;\n bottom: 0;\n height: 100%;\n width: 100%;\n border: 0;\n }\n\n // Modifier class for 16:9 aspect ratio\n &.embed-responsive-16by9 {\n padding-bottom: 56.25%;\n }\n\n // Modifier class for 4:3 aspect ratio\n &.embed-responsive-4by3 {\n padding-bottom: 75%;\n }\n}\n","//\n// Wells\n// --------------------------------------------------\n\n\n// Base class\n.well {\n min-height: 20px;\n padding: 19px;\n margin-bottom: 20px;\n background-color: @well-bg;\n border: 1px solid @well-border;\n border-radius: @border-radius-base;\n .box-shadow(inset 0 1px 1px rgba(0,0,0,.05));\n blockquote {\n border-color: #ddd;\n border-color: rgba(0,0,0,.15);\n }\n}\n\n// Sizes\n.well-lg {\n padding: 24px;\n border-radius: @border-radius-large;\n}\n.well-sm {\n padding: 9px;\n border-radius: @border-radius-small;\n}\n","//\n// Close icons\n// --------------------------------------------------\n\n\n.close {\n float: right;\n font-size: (@font-size-base * 1.5);\n font-weight: @close-font-weight;\n line-height: 1;\n color: @close-color;\n text-shadow: @close-text-shadow;\n .opacity(.2);\n\n &:hover,\n &:focus {\n color: @close-color;\n text-decoration: none;\n cursor: pointer;\n .opacity(.5);\n }\n\n // Additional properties for button version\n // iOS requires the button element instead of an anchor tag.\n // If you want the anchor version, it requires `href=\"#\"`.\n button& {\n padding: 0;\n cursor: pointer;\n background: transparent;\n border: 0;\n -webkit-appearance: none;\n }\n}\n","//\n// Modals\n// --------------------------------------------------\n\n// .modal-open - body class for killing the scroll\n// .modal - container to scroll within\n// .modal-dialog - positioning shell for the actual modal\n// .modal-content - actual modal w/ bg and corners and shit\n\n// Kill the scroll on the body\n.modal-open {\n overflow: hidden;\n}\n\n// Container that the modal scrolls within\n.modal {\n display: none;\n overflow: hidden;\n position: fixed;\n top: 0;\n right: 0;\n bottom: 0;\n left: 0;\n z-index: @zindex-modal;\n -webkit-overflow-scrolling: touch;\n\n // Prevent Chrome on Windows from adding a focus outline. For details, see\n // https://github.com/twbs/bootstrap/pull/10951.\n outline: 0;\n\n // When fading in the modal, animate it to slide down\n &.fade .modal-dialog {\n .translate3d(0, -25%, 0);\n .transition-transform(~\"0.3s ease-out\");\n }\n &.in .modal-dialog { .translate3d(0, 0, 0) }\n}\n.modal-open .modal {\n overflow-x: hidden;\n overflow-y: auto;\n}\n\n// Shell div to position the modal with bottom padding\n.modal-dialog {\n position: relative;\n width: auto;\n margin: 10px;\n}\n\n// Actual modal\n.modal-content {\n position: relative;\n background-color: @modal-content-bg;\n border: 1px solid @modal-content-fallback-border-color; //old browsers fallback (ie8 etc)\n border: 1px solid @modal-content-border-color;\n border-radius: @border-radius-large;\n .box-shadow(0 3px 9px rgba(0,0,0,.5));\n background-clip: padding-box;\n // Remove focus outline from opened modal\n outline: 0;\n}\n\n// Modal background\n.modal-backdrop {\n position: fixed;\n top: 0;\n right: 0;\n bottom: 0;\n left: 0;\n z-index: @zindex-modal-background;\n background-color: @modal-backdrop-bg;\n // Fade for backdrop\n &.fade { .opacity(0); }\n &.in { .opacity(@modal-backdrop-opacity); }\n}\n\n// Modal header\n// Top section of the modal w/ title and dismiss\n.modal-header {\n padding: @modal-title-padding;\n border-bottom: 1px solid @modal-header-border-color;\n min-height: (@modal-title-padding + @modal-title-line-height);\n}\n// Close icon\n.modal-header .close {\n margin-top: -2px;\n}\n\n// Title text within header\n.modal-title {\n margin: 0;\n line-height: @modal-title-line-height;\n}\n\n// Modal body\n// Where all modal content resides (sibling of .modal-header and .modal-footer)\n.modal-body {\n position: relative;\n padding: @modal-inner-padding;\n}\n\n// Footer (for actions)\n.modal-footer {\n padding: @modal-inner-padding;\n text-align: right; // right align buttons\n border-top: 1px solid @modal-footer-border-color;\n &:extend(.clearfix all); // clear it in case folks use .pull-* classes on buttons\n\n // Properly space out buttons\n .btn + .btn {\n margin-left: 5px;\n margin-bottom: 0; // account for input[type=\"submit\"] which gets the bottom margin like all other inputs\n }\n // but override that for button groups\n .btn-group .btn + .btn {\n margin-left: -1px;\n }\n // and override it for block buttons as well\n .btn-block + .btn-block {\n margin-left: 0;\n }\n}\n\n// Measure scrollbar width for padding body during modal show/hide\n.modal-scrollbar-measure {\n position: absolute;\n top: -9999px;\n width: 50px;\n height: 50px;\n overflow: scroll;\n}\n\n// Scale up the modal\n@media (min-width: @screen-sm-min) {\n // Automatically set modal's width for larger viewports\n .modal-dialog {\n width: @modal-md;\n margin: 30px auto;\n }\n .modal-content {\n .box-shadow(0 5px 15px rgba(0,0,0,.5));\n }\n\n // Modal sizes\n .modal-sm { width: @modal-sm; }\n}\n\n@media (min-width: @screen-md-min) {\n .modal-lg { width: @modal-lg; }\n}\n","//\n// Tooltips\n// --------------------------------------------------\n\n\n// Base class\n.tooltip {\n position: absolute;\n z-index: @zindex-tooltip;\n display: block;\n visibility: visible;\n font-size: @font-size-small;\n line-height: 1.4;\n .opacity(0);\n\n &.in { .opacity(@tooltip-opacity); }\n &.top { margin-top: -3px; padding: @tooltip-arrow-width 0; }\n &.right { margin-left: 3px; padding: 0 @tooltip-arrow-width; }\n &.bottom { margin-top: 3px; padding: @tooltip-arrow-width 0; }\n &.left { margin-left: -3px; padding: 0 @tooltip-arrow-width; }\n}\n\n// Wrapper for the tooltip content\n.tooltip-inner {\n max-width: @tooltip-max-width;\n padding: 3px 8px;\n color: @tooltip-color;\n text-align: center;\n text-decoration: none;\n background-color: @tooltip-bg;\n border-radius: @border-radius-base;\n}\n\n// Arrows\n.tooltip-arrow {\n position: absolute;\n width: 0;\n height: 0;\n border-color: transparent;\n border-style: solid;\n}\n.tooltip {\n &.top .tooltip-arrow {\n bottom: 0;\n left: 50%;\n margin-left: -@tooltip-arrow-width;\n border-width: @tooltip-arrow-width @tooltip-arrow-width 0;\n border-top-color: @tooltip-arrow-color;\n }\n &.top-left .tooltip-arrow {\n bottom: 0;\n left: @tooltip-arrow-width;\n border-width: @tooltip-arrow-width @tooltip-arrow-width 0;\n border-top-color: @tooltip-arrow-color;\n }\n &.top-right .tooltip-arrow {\n bottom: 0;\n right: @tooltip-arrow-width;\n border-width: @tooltip-arrow-width @tooltip-arrow-width 0;\n border-top-color: @tooltip-arrow-color;\n }\n &.right .tooltip-arrow {\n top: 50%;\n left: 0;\n margin-top: -@tooltip-arrow-width;\n border-width: @tooltip-arrow-width @tooltip-arrow-width @tooltip-arrow-width 0;\n border-right-color: @tooltip-arrow-color;\n }\n &.left .tooltip-arrow {\n top: 50%;\n right: 0;\n margin-top: -@tooltip-arrow-width;\n border-width: @tooltip-arrow-width 0 @tooltip-arrow-width @tooltip-arrow-width;\n border-left-color: @tooltip-arrow-color;\n }\n &.bottom .tooltip-arrow {\n top: 0;\n left: 50%;\n margin-left: -@tooltip-arrow-width;\n border-width: 0 @tooltip-arrow-width @tooltip-arrow-width;\n border-bottom-color: @tooltip-arrow-color;\n }\n &.bottom-left .tooltip-arrow {\n top: 0;\n left: @tooltip-arrow-width;\n border-width: 0 @tooltip-arrow-width @tooltip-arrow-width;\n border-bottom-color: @tooltip-arrow-color;\n }\n &.bottom-right .tooltip-arrow {\n top: 0;\n right: @tooltip-arrow-width;\n border-width: 0 @tooltip-arrow-width @tooltip-arrow-width;\n border-bottom-color: @tooltip-arrow-color;\n }\n}\n","//\n// Popovers\n// --------------------------------------------------\n\n\n.popover {\n position: absolute;\n top: 0;\n left: 0;\n z-index: @zindex-popover;\n display: none;\n max-width: @popover-max-width;\n padding: 1px;\n text-align: left; // Reset given new insertion method\n background-color: @popover-bg;\n background-clip: padding-box;\n border: 1px solid @popover-fallback-border-color;\n border: 1px solid @popover-border-color;\n border-radius: @border-radius-large;\n .box-shadow(0 5px 10px rgba(0,0,0,.2));\n\n // Overrides for proper insertion\n white-space: normal;\n\n // Offset the popover to account for the popover arrow\n &.top { margin-top: -@popover-arrow-width; }\n &.right { margin-left: @popover-arrow-width; }\n &.bottom { margin-top: @popover-arrow-width; }\n &.left { margin-left: -@popover-arrow-width; }\n}\n\n.popover-title {\n margin: 0; // reset heading margin\n padding: 8px 14px;\n font-size: @font-size-base;\n font-weight: normal;\n line-height: 18px;\n background-color: @popover-title-bg;\n border-bottom: 1px solid darken(@popover-title-bg, 5%);\n border-radius: (@border-radius-large - 1) (@border-radius-large - 1) 0 0;\n}\n\n.popover-content {\n padding: 9px 14px;\n}\n\n// Arrows\n//\n// .arrow is outer, .arrow:after is inner\n\n.popover > .arrow {\n &,\n &:after {\n position: absolute;\n display: block;\n width: 0;\n height: 0;\n border-color: transparent;\n border-style: solid;\n }\n}\n.popover > .arrow {\n border-width: @popover-arrow-outer-width;\n}\n.popover > .arrow:after {\n border-width: @popover-arrow-width;\n content: \"\";\n}\n\n.popover {\n &.top > .arrow {\n left: 50%;\n margin-left: -@popover-arrow-outer-width;\n border-bottom-width: 0;\n border-top-color: @popover-arrow-outer-fallback-color; // IE8 fallback\n border-top-color: @popover-arrow-outer-color;\n bottom: -@popover-arrow-outer-width;\n &:after {\n content: \" \";\n bottom: 1px;\n margin-left: -@popover-arrow-width;\n border-bottom-width: 0;\n border-top-color: @popover-arrow-color;\n }\n }\n &.right > .arrow {\n top: 50%;\n left: -@popover-arrow-outer-width;\n margin-top: -@popover-arrow-outer-width;\n border-left-width: 0;\n border-right-color: @popover-arrow-outer-fallback-color; // IE8 fallback\n border-right-color: @popover-arrow-outer-color;\n &:after {\n content: \" \";\n left: 1px;\n bottom: -@popover-arrow-width;\n border-left-width: 0;\n border-right-color: @popover-arrow-color;\n }\n }\n &.bottom > .arrow {\n left: 50%;\n margin-left: -@popover-arrow-outer-width;\n border-top-width: 0;\n border-bottom-color: @popover-arrow-outer-fallback-color; // IE8 fallback\n border-bottom-color: @popover-arrow-outer-color;\n top: -@popover-arrow-outer-width;\n &:after {\n content: \" \";\n top: 1px;\n margin-left: -@popover-arrow-width;\n border-top-width: 0;\n border-bottom-color: @popover-arrow-color;\n }\n }\n\n &.left > .arrow {\n top: 50%;\n right: -@popover-arrow-outer-width;\n margin-top: -@popover-arrow-outer-width;\n border-right-width: 0;\n border-left-color: @popover-arrow-outer-fallback-color; // IE8 fallback\n border-left-color: @popover-arrow-outer-color;\n &:after {\n content: \" \";\n right: 1px;\n border-right-width: 0;\n border-left-color: @popover-arrow-color;\n bottom: -@popover-arrow-width;\n }\n }\n\n}\n","//\n// Carousel\n// --------------------------------------------------\n\n\n// Wrapper for the slide container and indicators\n.carousel {\n position: relative;\n}\n\n.carousel-inner {\n position: relative;\n overflow: hidden;\n width: 100%;\n\n > .item {\n display: none;\n position: relative;\n .transition(.6s ease-in-out left);\n\n // Account for jankitude on images\n > img,\n > a > img {\n &:extend(.img-responsive);\n line-height: 1;\n }\n }\n\n > .active,\n > .next,\n > .prev {\n display: block;\n }\n\n > .active {\n left: 0;\n }\n\n > .next,\n > .prev {\n position: absolute;\n top: 0;\n width: 100%;\n }\n\n > .next {\n left: 100%;\n }\n > .prev {\n left: -100%;\n }\n > .next.left,\n > .prev.right {\n left: 0;\n }\n\n > .active.left {\n left: -100%;\n }\n > .active.right {\n left: 100%;\n }\n\n}\n\n// Left/right controls for nav\n// ---------------------------\n\n.carousel-control {\n position: absolute;\n top: 0;\n left: 0;\n bottom: 0;\n width: @carousel-control-width;\n .opacity(@carousel-control-opacity);\n font-size: @carousel-control-font-size;\n color: @carousel-control-color;\n text-align: center;\n text-shadow: @carousel-text-shadow;\n // We can't have this transition here because WebKit cancels the carousel\n // animation if you trip this while in the middle of another animation.\n\n // Set gradients for backgrounds\n &.left {\n #gradient > .horizontal(@start-color: rgba(0,0,0,.5); @end-color: rgba(0,0,0,.0001));\n }\n &.right {\n left: auto;\n right: 0;\n #gradient > .horizontal(@start-color: rgba(0,0,0,.0001); @end-color: rgba(0,0,0,.5));\n }\n\n // Hover/focus state\n &:hover,\n &:focus {\n outline: 0;\n color: @carousel-control-color;\n text-decoration: none;\n .opacity(.9);\n }\n\n // Toggles\n .icon-prev,\n .icon-next,\n .glyphicon-chevron-left,\n .glyphicon-chevron-right {\n position: absolute;\n top: 50%;\n z-index: 5;\n display: inline-block;\n }\n .icon-prev,\n .glyphicon-chevron-left {\n left: 50%;\n margin-left: -10px;\n }\n .icon-next,\n .glyphicon-chevron-right {\n right: 50%;\n margin-right: -10px;\n }\n .icon-prev,\n .icon-next {\n width: 20px;\n height: 20px;\n margin-top: -10px;\n font-family: serif;\n }\n\n\n .icon-prev {\n &:before {\n content: '\\2039';// SINGLE LEFT-POINTING ANGLE QUOTATION MARK (U+2039)\n }\n }\n .icon-next {\n &:before {\n content: '\\203a';// SINGLE RIGHT-POINTING ANGLE QUOTATION MARK (U+203A)\n }\n }\n}\n\n// Optional indicator pips\n//\n// Add an unordered list with the following class and add a list item for each\n// slide your carousel holds.\n\n.carousel-indicators {\n position: absolute;\n bottom: 10px;\n left: 50%;\n z-index: 15;\n width: 60%;\n margin-left: -30%;\n padding-left: 0;\n list-style: none;\n text-align: center;\n\n li {\n display: inline-block;\n width: 10px;\n height: 10px;\n margin: 1px;\n text-indent: -999px;\n border: 1px solid @carousel-indicator-border-color;\n border-radius: 10px;\n cursor: pointer;\n\n // IE8-9 hack for event handling\n //\n // Internet Explorer 8-9 does not support clicks on elements without a set\n // `background-color`. We cannot use `filter` since that's not viewed as a\n // background color by the browser. Thus, a hack is needed.\n //\n // For IE8, we set solid black as it doesn't support `rgba()`. For IE9, we\n // set alpha transparency for the best results possible.\n background-color: #000 \\9; // IE8\n background-color: rgba(0,0,0,0); // IE9\n }\n .active {\n margin: 0;\n width: 12px;\n height: 12px;\n background-color: @carousel-indicator-active-bg;\n }\n}\n\n// Optional captions\n// -----------------------------\n// Hidden by default for smaller viewports\n.carousel-caption {\n position: absolute;\n left: 15%;\n right: 15%;\n bottom: 20px;\n z-index: 10;\n padding-top: 20px;\n padding-bottom: 20px;\n color: @carousel-caption-color;\n text-align: center;\n text-shadow: @carousel-text-shadow;\n & .btn {\n text-shadow: none; // No shadow for button elements in carousel-caption\n }\n}\n\n\n// Scale up controls for tablets and up\n@media screen and (min-width: @screen-sm-min) {\n\n // Scale up the controls a smidge\n .carousel-control {\n .glyphicon-chevron-left,\n .glyphicon-chevron-right,\n .icon-prev,\n .icon-next {\n width: 30px;\n height: 30px;\n margin-top: -15px;\n font-size: 30px;\n }\n .glyphicon-chevron-left,\n .icon-prev {\n margin-left: -15px;\n }\n .glyphicon-chevron-right,\n .icon-next {\n margin-right: -15px;\n }\n }\n\n // Show and left align the captions\n .carousel-caption {\n left: 20%;\n right: 20%;\n padding-bottom: 30px;\n }\n\n // Move up the indicators\n .carousel-indicators {\n bottom: 20px;\n }\n}\n","// Clearfix\n//\n// For modern browsers\n// 1. The space content is one way to avoid an Opera bug when the\n// contenteditable attribute is included anywhere else in the document.\n// Otherwise it causes space to appear at the top and bottom of elements\n// that are clearfixed.\n// 2. The use of `table` rather than `block` is only necessary if using\n// `:before` to contain the top-margins of child elements.\n//\n// Source: http://nicolasgallagher.com/micro-clearfix-hack/\n\n.clearfix() {\n &:before,\n &:after {\n content: \" \"; // 1\n display: table; // 2\n }\n &:after {\n clear: both;\n }\n}\n","// Center-align a block level element\n\n.center-block() {\n display: block;\n margin-left: auto;\n margin-right: auto;\n}\n","// CSS image replacement\n//\n// Heads up! v3 launched with with only `.hide-text()`, but per our pattern for\n// mixins being reused as classes with the same name, this doesn't hold up. As\n// of v3.0.1 we have added `.text-hide()` and deprecated `.hide-text()`.\n//\n// Source: https://github.com/h5bp/html5-boilerplate/commit/aa0396eae757\n\n// Deprecated as of v3.0.1 (will be removed in v4)\n.hide-text() {\n font: ~\"0/0\" a;\n color: transparent;\n text-shadow: none;\n background-color: transparent;\n border: 0;\n}\n\n// New mixin to use as of v3.0.1\n.text-hide() {\n .hide-text();\n}\n","//\n// Responsive: Utility classes\n// --------------------------------------------------\n\n\n// IE10 in Windows (Phone) 8\n//\n// Support for responsive views via media queries is kind of borked in IE10, for\n// Surface/desktop in split view and for Windows Phone 8. This particular fix\n// must be accompanied by a snippet of JavaScript to sniff the user agent and\n// apply some conditional CSS to *only* the Surface/desktop Windows 8. Look at\n// our Getting Started page for more information on this bug.\n//\n// For more information, see the following:\n//\n// Issue: https://github.com/twbs/bootstrap/issues/10497\n// Docs: http://getbootstrap.com/getting-started/#support-ie10-width\n// Source: http://timkadlec.com/2013/01/windows-phone-8-and-device-width/\n// Source: http://timkadlec.com/2012/10/ie10-snap-mode-and-responsive-design/\n\n@-ms-viewport {\n width: device-width;\n}\n\n\n// Visibility utilities\n// Note: Deprecated .visible-xs, .visible-sm, .visible-md, and .visible-lg as of v3.2.0\n.visible-xs,\n.visible-sm,\n.visible-md,\n.visible-lg {\n .responsive-invisibility();\n}\n\n.visible-xs-block,\n.visible-xs-inline,\n.visible-xs-inline-block,\n.visible-sm-block,\n.visible-sm-inline,\n.visible-sm-inline-block,\n.visible-md-block,\n.visible-md-inline,\n.visible-md-inline-block,\n.visible-lg-block,\n.visible-lg-inline,\n.visible-lg-inline-block {\n display: none !important;\n}\n\n.visible-xs {\n @media (max-width: @screen-xs-max) {\n .responsive-visibility();\n }\n}\n.visible-xs-block {\n @media (max-width: @screen-xs-max) {\n display: block !important;\n }\n}\n.visible-xs-inline {\n @media (max-width: @screen-xs-max) {\n display: inline !important;\n }\n}\n.visible-xs-inline-block {\n @media (max-width: @screen-xs-max) {\n display: inline-block !important;\n }\n}\n\n.visible-sm {\n @media (min-width: @screen-sm-min) and (max-width: @screen-sm-max) {\n .responsive-visibility();\n }\n}\n.visible-sm-block {\n @media (min-width: @screen-sm-min) and (max-width: @screen-sm-max) {\n display: block !important;\n }\n}\n.visible-sm-inline {\n @media (min-width: @screen-sm-min) and (max-width: @screen-sm-max) {\n display: inline !important;\n }\n}\n.visible-sm-inline-block {\n @media (min-width: @screen-sm-min) and (max-width: @screen-sm-max) {\n display: inline-block !important;\n }\n}\n\n.visible-md {\n @media (min-width: @screen-md-min) and (max-width: @screen-md-max) {\n .responsive-visibility();\n }\n}\n.visible-md-block {\n @media (min-width: @screen-md-min) and (max-width: @screen-md-max) {\n display: block !important;\n }\n}\n.visible-md-inline {\n @media (min-width: @screen-md-min) and (max-width: @screen-md-max) {\n display: inline !important;\n }\n}\n.visible-md-inline-block {\n @media (min-width: @screen-md-min) and (max-width: @screen-md-max) {\n display: inline-block !important;\n }\n}\n\n.visible-lg {\n @media (min-width: @screen-lg-min) {\n .responsive-visibility();\n }\n}\n.visible-lg-block {\n @media (min-width: @screen-lg-min) {\n display: block !important;\n }\n}\n.visible-lg-inline {\n @media (min-width: @screen-lg-min) {\n display: inline !important;\n }\n}\n.visible-lg-inline-block {\n @media (min-width: @screen-lg-min) {\n display: inline-block !important;\n }\n}\n\n.hidden-xs {\n @media (max-width: @screen-xs-max) {\n .responsive-invisibility();\n }\n}\n.hidden-sm {\n @media (min-width: @screen-sm-min) and (max-width: @screen-sm-max) {\n .responsive-invisibility();\n }\n}\n.hidden-md {\n @media (min-width: @screen-md-min) and (max-width: @screen-md-max) {\n .responsive-invisibility();\n }\n}\n.hidden-lg {\n @media (min-width: @screen-lg-min) {\n .responsive-invisibility();\n }\n}\n\n\n// Print utilities\n//\n// Media queries are placed on the inside to be mixin-friendly.\n\n// Note: Deprecated .visible-print as of v3.2.0\n.visible-print {\n .responsive-invisibility();\n\n @media print {\n .responsive-visibility();\n }\n}\n.visible-print-block {\n display: none !important;\n\n @media print {\n display: block !important;\n }\n}\n.visible-print-inline {\n display: none !important;\n\n @media print {\n display: inline !important;\n }\n}\n.visible-print-inline-block {\n display: none !important;\n\n @media print {\n display: inline-block !important;\n }\n}\n\n.hidden-print {\n @media print {\n .responsive-invisibility();\n }\n}\n","// Responsive utilities\n\n//\n// More easily include all the states for responsive-utilities.less.\n.responsive-visibility() {\n display: block !important;\n table& { display: table; }\n tr& { display: table-row !important; }\n th&,\n td& { display: table-cell !important; }\n}\n\n.responsive-invisibility() {\n display: none !important;\n}\n"]}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.min.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.min.css
new file mode 100644
index 00000000000..a9f35ceedfa
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/css/bootstrap.min.css
@@ -0,0 +1,5 @@
+/*!
+ * Bootstrap v3.2.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.js
new file mode 100644
index 00000000000..53da1c77c08
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.js
@@ -0,0 +1,2114 @@
+/*!
+ * Bootstrap v3.2.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+
+if (typeof jQuery === 'undefined') { throw new Error('Bootstrap\'s JavaScript requires jQuery') }
+
+/* ========================================================================
+ * Bootstrap: transition.js v3.2.0
+ * http://getbootstrap.com/javascript/#transitions
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // CSS TRANSITION SUPPORT (Shoutout: http://www.modernizr.com/)
+ // ============================================================
+
+ function transitionEnd() {
+ var el = document.createElement('bootstrap')
+
+ var transEndEventNames = {
+ WebkitTransition : 'webkitTransitionEnd',
+ MozTransition : 'transitionend',
+ OTransition : 'oTransitionEnd otransitionend',
+ transition : 'transitionend'
+ }
+
+ for (var name in transEndEventNames) {
+ if (el.style[name] !== undefined) {
+ return { end: transEndEventNames[name] }
+ }
+ }
+
+ return false // explicit for ie8 ( ._.)
+ }
+
+ // http://blog.alexmaccaw.com/css-transitions
+ $.fn.emulateTransitionEnd = function (duration) {
+ var called = false
+ var $el = this
+ $(this).one('bsTransitionEnd', function () { called = true })
+ var callback = function () { if (!called) $($el).trigger($.support.transition.end) }
+ setTimeout(callback, duration)
+ return this
+ }
+
+ $(function () {
+ $.support.transition = transitionEnd()
+
+ if (!$.support.transition) return
+
+ $.event.special.bsTransitionEnd = {
+ bindType: $.support.transition.end,
+ delegateType: $.support.transition.end,
+ handle: function (e) {
+ if ($(e.target).is(this)) return e.handleObj.handler.apply(this, arguments)
+ }
+ }
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: alert.js v3.2.0
+ * http://getbootstrap.com/javascript/#alerts
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // ALERT CLASS DEFINITION
+ // ======================
+
+ var dismiss = '[data-dismiss="alert"]'
+ var Alert = function (el) {
+ $(el).on('click', dismiss, this.close)
+ }
+
+ Alert.VERSION = '3.2.0'
+
+ Alert.prototype.close = function (e) {
+ var $this = $(this)
+ var selector = $this.attr('data-target')
+
+ if (!selector) {
+ selector = $this.attr('href')
+ selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') // strip for ie7
+ }
+
+ var $parent = $(selector)
+
+ if (e) e.preventDefault()
+
+ if (!$parent.length) {
+ $parent = $this.hasClass('alert') ? $this : $this.parent()
+ }
+
+ $parent.trigger(e = $.Event('close.bs.alert'))
+
+ if (e.isDefaultPrevented()) return
+
+ $parent.removeClass('in')
+
+ function removeElement() {
+ // detach from parent, fire event then clean up data
+ $parent.detach().trigger('closed.bs.alert').remove()
+ }
+
+ $.support.transition && $parent.hasClass('fade') ?
+ $parent
+ .one('bsTransitionEnd', removeElement)
+ .emulateTransitionEnd(150) :
+ removeElement()
+ }
+
+
+ // ALERT PLUGIN DEFINITION
+ // =======================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.alert')
+
+ if (!data) $this.data('bs.alert', (data = new Alert(this)))
+ if (typeof option == 'string') data[option].call($this)
+ })
+ }
+
+ var old = $.fn.alert
+
+ $.fn.alert = Plugin
+ $.fn.alert.Constructor = Alert
+
+
+ // ALERT NO CONFLICT
+ // =================
+
+ $.fn.alert.noConflict = function () {
+ $.fn.alert = old
+ return this
+ }
+
+
+ // ALERT DATA-API
+ // ==============
+
+ $(document).on('click.bs.alert.data-api', dismiss, Alert.prototype.close)
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: button.js v3.2.0
+ * http://getbootstrap.com/javascript/#buttons
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // BUTTON PUBLIC CLASS DEFINITION
+ // ==============================
+
+ var Button = function (element, options) {
+ this.$element = $(element)
+ this.options = $.extend({}, Button.DEFAULTS, options)
+ this.isLoading = false
+ }
+
+ Button.VERSION = '3.2.0'
+
+ Button.DEFAULTS = {
+ loadingText: 'loading...'
+ }
+
+ Button.prototype.setState = function (state) {
+ var d = 'disabled'
+ var $el = this.$element
+ var val = $el.is('input') ? 'val' : 'html'
+ var data = $el.data()
+
+ state = state + 'Text'
+
+ if (data.resetText == null) $el.data('resetText', $el[val]())
+
+ $el[val](data[state] == null ? this.options[state] : data[state])
+
+ // push to event loop to allow forms to submit
+ setTimeout($.proxy(function () {
+ if (state == 'loadingText') {
+ this.isLoading = true
+ $el.addClass(d).attr(d, d)
+ } else if (this.isLoading) {
+ this.isLoading = false
+ $el.removeClass(d).removeAttr(d)
+ }
+ }, this), 0)
+ }
+
+ Button.prototype.toggle = function () {
+ var changed = true
+ var $parent = this.$element.closest('[data-toggle="buttons"]')
+
+ if ($parent.length) {
+ var $input = this.$element.find('input')
+ if ($input.prop('type') == 'radio') {
+ if ($input.prop('checked') && this.$element.hasClass('active')) changed = false
+ else $parent.find('.active').removeClass('active')
+ }
+ if (changed) $input.prop('checked', !this.$element.hasClass('active')).trigger('change')
+ }
+
+ if (changed) this.$element.toggleClass('active')
+ }
+
+
+ // BUTTON PLUGIN DEFINITION
+ // ========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.button')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.button', (data = new Button(this, options)))
+
+ if (option == 'toggle') data.toggle()
+ else if (option) data.setState(option)
+ })
+ }
+
+ var old = $.fn.button
+
+ $.fn.button = Plugin
+ $.fn.button.Constructor = Button
+
+
+ // BUTTON NO CONFLICT
+ // ==================
+
+ $.fn.button.noConflict = function () {
+ $.fn.button = old
+ return this
+ }
+
+
+ // BUTTON DATA-API
+ // ===============
+
+ $(document).on('click.bs.button.data-api', '[data-toggle^="button"]', function (e) {
+ var $btn = $(e.target)
+ if (!$btn.hasClass('btn')) $btn = $btn.closest('.btn')
+ Plugin.call($btn, 'toggle')
+ e.preventDefault()
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: carousel.js v3.2.0
+ * http://getbootstrap.com/javascript/#carousel
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // CAROUSEL CLASS DEFINITION
+ // =========================
+
+ var Carousel = function (element, options) {
+ this.$element = $(element).on('keydown.bs.carousel', $.proxy(this.keydown, this))
+ this.$indicators = this.$element.find('.carousel-indicators')
+ this.options = options
+ this.paused =
+ this.sliding =
+ this.interval =
+ this.$active =
+ this.$items = null
+
+ this.options.pause == 'hover' && this.$element
+ .on('mouseenter.bs.carousel', $.proxy(this.pause, this))
+ .on('mouseleave.bs.carousel', $.proxy(this.cycle, this))
+ }
+
+ Carousel.VERSION = '3.2.0'
+
+ Carousel.DEFAULTS = {
+ interval: 5000,
+ pause: 'hover',
+ wrap: true
+ }
+
+ Carousel.prototype.keydown = function (e) {
+ switch (e.which) {
+ case 37: this.prev(); break
+ case 39: this.next(); break
+ default: return
+ }
+
+ e.preventDefault()
+ }
+
+ Carousel.prototype.cycle = function (e) {
+ e || (this.paused = false)
+
+ this.interval && clearInterval(this.interval)
+
+ this.options.interval
+ && !this.paused
+ && (this.interval = setInterval($.proxy(this.next, this), this.options.interval))
+
+ return this
+ }
+
+ Carousel.prototype.getItemIndex = function (item) {
+ this.$items = item.parent().children('.item')
+ return this.$items.index(item || this.$active)
+ }
+
+ Carousel.prototype.to = function (pos) {
+ var that = this
+ var activeIndex = this.getItemIndex(this.$active = this.$element.find('.item.active'))
+
+ if (pos > (this.$items.length - 1) || pos < 0) return
+
+ if (this.sliding) return this.$element.one('slid.bs.carousel', function () { that.to(pos) }) // yes, "slid"
+ if (activeIndex == pos) return this.pause().cycle()
+
+ return this.slide(pos > activeIndex ? 'next' : 'prev', $(this.$items[pos]))
+ }
+
+ Carousel.prototype.pause = function (e) {
+ e || (this.paused = true)
+
+ if (this.$element.find('.next, .prev').length && $.support.transition) {
+ this.$element.trigger($.support.transition.end)
+ this.cycle(true)
+ }
+
+ this.interval = clearInterval(this.interval)
+
+ return this
+ }
+
+ Carousel.prototype.next = function () {
+ if (this.sliding) return
+ return this.slide('next')
+ }
+
+ Carousel.prototype.prev = function () {
+ if (this.sliding) return
+ return this.slide('prev')
+ }
+
+ Carousel.prototype.slide = function (type, next) {
+ var $active = this.$element.find('.item.active')
+ var $next = next || $active[type]()
+ var isCycling = this.interval
+ var direction = type == 'next' ? 'left' : 'right'
+ var fallback = type == 'next' ? 'first' : 'last'
+ var that = this
+
+ if (!$next.length) {
+ if (!this.options.wrap) return
+ $next = this.$element.find('.item')[fallback]()
+ }
+
+ if ($next.hasClass('active')) return (this.sliding = false)
+
+ var relatedTarget = $next[0]
+ var slideEvent = $.Event('slide.bs.carousel', {
+ relatedTarget: relatedTarget,
+ direction: direction
+ })
+ this.$element.trigger(slideEvent)
+ if (slideEvent.isDefaultPrevented()) return
+
+ this.sliding = true
+
+ isCycling && this.pause()
+
+ if (this.$indicators.length) {
+ this.$indicators.find('.active').removeClass('active')
+ var $nextIndicator = $(this.$indicators.children()[this.getItemIndex($next)])
+ $nextIndicator && $nextIndicator.addClass('active')
+ }
+
+ var slidEvent = $.Event('slid.bs.carousel', { relatedTarget: relatedTarget, direction: direction }) // yes, "slid"
+ if ($.support.transition && this.$element.hasClass('slide')) {
+ $next.addClass(type)
+ $next[0].offsetWidth // force reflow
+ $active.addClass(direction)
+ $next.addClass(direction)
+ $active
+ .one('bsTransitionEnd', function () {
+ $next.removeClass([type, direction].join(' ')).addClass('active')
+ $active.removeClass(['active', direction].join(' '))
+ that.sliding = false
+ setTimeout(function () {
+ that.$element.trigger(slidEvent)
+ }, 0)
+ })
+ .emulateTransitionEnd($active.css('transition-duration').slice(0, -1) * 1000)
+ } else {
+ $active.removeClass('active')
+ $next.addClass('active')
+ this.sliding = false
+ this.$element.trigger(slidEvent)
+ }
+
+ isCycling && this.cycle()
+
+ return this
+ }
+
+
+ // CAROUSEL PLUGIN DEFINITION
+ // ==========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.carousel')
+ var options = $.extend({}, Carousel.DEFAULTS, $this.data(), typeof option == 'object' && option)
+ var action = typeof option == 'string' ? option : options.slide
+
+ if (!data) $this.data('bs.carousel', (data = new Carousel(this, options)))
+ if (typeof option == 'number') data.to(option)
+ else if (action) data[action]()
+ else if (options.interval) data.pause().cycle()
+ })
+ }
+
+ var old = $.fn.carousel
+
+ $.fn.carousel = Plugin
+ $.fn.carousel.Constructor = Carousel
+
+
+ // CAROUSEL NO CONFLICT
+ // ====================
+
+ $.fn.carousel.noConflict = function () {
+ $.fn.carousel = old
+ return this
+ }
+
+
+ // CAROUSEL DATA-API
+ // =================
+
+ $(document).on('click.bs.carousel.data-api', '[data-slide], [data-slide-to]', function (e) {
+ var href
+ var $this = $(this)
+ var $target = $($this.attr('data-target') || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '')) // strip for ie7
+ if (!$target.hasClass('carousel')) return
+ var options = $.extend({}, $target.data(), $this.data())
+ var slideIndex = $this.attr('data-slide-to')
+ if (slideIndex) options.interval = false
+
+ Plugin.call($target, options)
+
+ if (slideIndex) {
+ $target.data('bs.carousel').to(slideIndex)
+ }
+
+ e.preventDefault()
+ })
+
+ $(window).on('load', function () {
+ $('[data-ride="carousel"]').each(function () {
+ var $carousel = $(this)
+ Plugin.call($carousel, $carousel.data())
+ })
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: collapse.js v3.2.0
+ * http://getbootstrap.com/javascript/#collapse
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // COLLAPSE PUBLIC CLASS DEFINITION
+ // ================================
+
+ var Collapse = function (element, options) {
+ this.$element = $(element)
+ this.options = $.extend({}, Collapse.DEFAULTS, options)
+ this.transitioning = null
+
+ if (this.options.parent) this.$parent = $(this.options.parent)
+ if (this.options.toggle) this.toggle()
+ }
+
+ Collapse.VERSION = '3.2.0'
+
+ Collapse.DEFAULTS = {
+ toggle: true
+ }
+
+ Collapse.prototype.dimension = function () {
+ var hasWidth = this.$element.hasClass('width')
+ return hasWidth ? 'width' : 'height'
+ }
+
+ Collapse.prototype.show = function () {
+ if (this.transitioning || this.$element.hasClass('in')) return
+
+ var startEvent = $.Event('show.bs.collapse')
+ this.$element.trigger(startEvent)
+ if (startEvent.isDefaultPrevented()) return
+
+ var actives = this.$parent && this.$parent.find('> .panel > .in')
+
+ if (actives && actives.length) {
+ var hasData = actives.data('bs.collapse')
+ if (hasData && hasData.transitioning) return
+ Plugin.call(actives, 'hide')
+ hasData || actives.data('bs.collapse', null)
+ }
+
+ var dimension = this.dimension()
+
+ this.$element
+ .removeClass('collapse')
+ .addClass('collapsing')[dimension](0)
+
+ this.transitioning = 1
+
+ var complete = function () {
+ this.$element
+ .removeClass('collapsing')
+ .addClass('collapse in')[dimension]('')
+ this.transitioning = 0
+ this.$element
+ .trigger('shown.bs.collapse')
+ }
+
+ if (!$.support.transition) return complete.call(this)
+
+ var scrollSize = $.camelCase(['scroll', dimension].join('-'))
+
+ this.$element
+ .one('bsTransitionEnd', $.proxy(complete, this))
+ .emulateTransitionEnd(350)[dimension](this.$element[0][scrollSize])
+ }
+
+ Collapse.prototype.hide = function () {
+ if (this.transitioning || !this.$element.hasClass('in')) return
+
+ var startEvent = $.Event('hide.bs.collapse')
+ this.$element.trigger(startEvent)
+ if (startEvent.isDefaultPrevented()) return
+
+ var dimension = this.dimension()
+
+ this.$element[dimension](this.$element[dimension]())[0].offsetHeight
+
+ this.$element
+ .addClass('collapsing')
+ .removeClass('collapse')
+ .removeClass('in')
+
+ this.transitioning = 1
+
+ var complete = function () {
+ this.transitioning = 0
+ this.$element
+ .trigger('hidden.bs.collapse')
+ .removeClass('collapsing')
+ .addClass('collapse')
+ }
+
+ if (!$.support.transition) return complete.call(this)
+
+ this.$element
+ [dimension](0)
+ .one('bsTransitionEnd', $.proxy(complete, this))
+ .emulateTransitionEnd(350)
+ }
+
+ Collapse.prototype.toggle = function () {
+ this[this.$element.hasClass('in') ? 'hide' : 'show']()
+ }
+
+
+ // COLLAPSE PLUGIN DEFINITION
+ // ==========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.collapse')
+ var options = $.extend({}, Collapse.DEFAULTS, $this.data(), typeof option == 'object' && option)
+
+ if (!data && options.toggle && option == 'show') option = !option
+ if (!data) $this.data('bs.collapse', (data = new Collapse(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ var old = $.fn.collapse
+
+ $.fn.collapse = Plugin
+ $.fn.collapse.Constructor = Collapse
+
+
+ // COLLAPSE NO CONFLICT
+ // ====================
+
+ $.fn.collapse.noConflict = function () {
+ $.fn.collapse = old
+ return this
+ }
+
+
+ // COLLAPSE DATA-API
+ // =================
+
+ $(document).on('click.bs.collapse.data-api', '[data-toggle="collapse"]', function (e) {
+ var href
+ var $this = $(this)
+ var target = $this.attr('data-target')
+ || e.preventDefault()
+ || (href = $this.attr('href')) && href.replace(/.*(?=#[^\s]+$)/, '') // strip for ie7
+ var $target = $(target)
+ var data = $target.data('bs.collapse')
+ var option = data ? 'toggle' : $this.data()
+ var parent = $this.attr('data-parent')
+ var $parent = parent && $(parent)
+
+ if (!data || !data.transitioning) {
+ if ($parent) $parent.find('[data-toggle="collapse"][data-parent="' + parent + '"]').not($this).addClass('collapsed')
+ $this[$target.hasClass('in') ? 'addClass' : 'removeClass']('collapsed')
+ }
+
+ Plugin.call($target, option)
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: dropdown.js v3.2.0
+ * http://getbootstrap.com/javascript/#dropdowns
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // DROPDOWN CLASS DEFINITION
+ // =========================
+
+ var backdrop = '.dropdown-backdrop'
+ var toggle = '[data-toggle="dropdown"]'
+ var Dropdown = function (element) {
+ $(element).on('click.bs.dropdown', this.toggle)
+ }
+
+ Dropdown.VERSION = '3.2.0'
+
+ Dropdown.prototype.toggle = function (e) {
+ var $this = $(this)
+
+ if ($this.is('.disabled, :disabled')) return
+
+ var $parent = getParent($this)
+ var isActive = $parent.hasClass('open')
+
+ clearMenus()
+
+ if (!isActive) {
+ if ('ontouchstart' in document.documentElement && !$parent.closest('.navbar-nav').length) {
+ // if mobile we use a backdrop because click events don't delegate
+ $('<div class="dropdown-backdrop"/>').insertAfter($(this)).on('click', clearMenus)
+ }
+
+ var relatedTarget = { relatedTarget: this }
+ $parent.trigger(e = $.Event('show.bs.dropdown', relatedTarget))
+
+ if (e.isDefaultPrevented()) return
+
+ $this.trigger('focus')
+
+ $parent
+ .toggleClass('open')
+ .trigger('shown.bs.dropdown', relatedTarget)
+ }
+
+ return false
+ }
+
+ Dropdown.prototype.keydown = function (e) {
+ if (!/(38|40|27)/.test(e.keyCode)) return
+
+ var $this = $(this)
+
+ e.preventDefault()
+ e.stopPropagation()
+
+ if ($this.is('.disabled, :disabled')) return
+
+ var $parent = getParent($this)
+ var isActive = $parent.hasClass('open')
+
+ if (!isActive || (isActive && e.keyCode == 27)) {
+ if (e.which == 27) $parent.find(toggle).trigger('focus')
+ return $this.trigger('click')
+ }
+
+ var desc = ' li:not(.divider):visible a'
+ var $items = $parent.find('[role="menu"]' + desc + ', [role="listbox"]' + desc)
+
+ if (!$items.length) return
+
+ var index = $items.index($items.filter(':focus'))
+
+ if (e.keyCode == 38 && index > 0) index-- // up
+ if (e.keyCode == 40 && index < $items.length - 1) index++ // down
+ if (!~index) index = 0
+
+ $items.eq(index).trigger('focus')
+ }
+
+ function clearMenus(e) {
+ if (e && e.which === 3) return
+ $(backdrop).remove()
+ $(toggle).each(function () {
+ var $parent = getParent($(this))
+ var relatedTarget = { relatedTarget: this }
+ if (!$parent.hasClass('open')) return
+ $parent.trigger(e = $.Event('hide.bs.dropdown', relatedTarget))
+ if (e.isDefaultPrevented()) return
+ $parent.removeClass('open').trigger('hidden.bs.dropdown', relatedTarget)
+ })
+ }
+
+ function getParent($this) {
+ var selector = $this.attr('data-target')
+
+ if (!selector) {
+ selector = $this.attr('href')
+ selector = selector && /#[A-Za-z]/.test(selector) && selector.replace(/.*(?=#[^\s]*$)/, '') // strip for ie7
+ }
+
+ var $parent = selector && $(selector)
+
+ return $parent && $parent.length ? $parent : $this.parent()
+ }
+
+
+ // DROPDOWN PLUGIN DEFINITION
+ // ==========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.dropdown')
+
+ if (!data) $this.data('bs.dropdown', (data = new Dropdown(this)))
+ if (typeof option == 'string') data[option].call($this)
+ })
+ }
+
+ var old = $.fn.dropdown
+
+ $.fn.dropdown = Plugin
+ $.fn.dropdown.Constructor = Dropdown
+
+
+ // DROPDOWN NO CONFLICT
+ // ====================
+
+ $.fn.dropdown.noConflict = function () {
+ $.fn.dropdown = old
+ return this
+ }
+
+
+ // APPLY TO STANDARD DROPDOWN ELEMENTS
+ // ===================================
+
+ $(document)
+ .on('click.bs.dropdown.data-api', clearMenus)
+ .on('click.bs.dropdown.data-api', '.dropdown form', function (e) { e.stopPropagation() })
+ .on('click.bs.dropdown.data-api', toggle, Dropdown.prototype.toggle)
+ .on('keydown.bs.dropdown.data-api', toggle + ', [role="menu"], [role="listbox"]', Dropdown.prototype.keydown)
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: modal.js v3.2.0
+ * http://getbootstrap.com/javascript/#modals
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // MODAL CLASS DEFINITION
+ // ======================
+
+ var Modal = function (element, options) {
+ this.options = options
+ this.$body = $(document.body)
+ this.$element = $(element)
+ this.$backdrop =
+ this.isShown = null
+ this.scrollbarWidth = 0
+
+ if (this.options.remote) {
+ this.$element
+ .find('.modal-content')
+ .load(this.options.remote, $.proxy(function () {
+ this.$element.trigger('loaded.bs.modal')
+ }, this))
+ }
+ }
+
+ Modal.VERSION = '3.2.0'
+
+ Modal.DEFAULTS = {
+ backdrop: true,
+ keyboard: true,
+ show: true
+ }
+
+ Modal.prototype.toggle = function (_relatedTarget) {
+ return this.isShown ? this.hide() : this.show(_relatedTarget)
+ }
+
+ Modal.prototype.show = function (_relatedTarget) {
+ var that = this
+ var e = $.Event('show.bs.modal', { relatedTarget: _relatedTarget })
+
+ this.$element.trigger(e)
+
+ if (this.isShown || e.isDefaultPrevented()) return
+
+ this.isShown = true
+
+ this.checkScrollbar()
+ this.$body.addClass('modal-open')
+
+ this.setScrollbar()
+ this.escape()
+
+ this.$element.on('click.dismiss.bs.modal', '[data-dismiss="modal"]', $.proxy(this.hide, this))
+
+ this.backdrop(function () {
+ var transition = $.support.transition && that.$element.hasClass('fade')
+
+ if (!that.$element.parent().length) {
+ that.$element.appendTo(that.$body) // don't move modals dom position
+ }
+
+ that.$element
+ .show()
+ .scrollTop(0)
+
+ if (transition) {
+ that.$element[0].offsetWidth // force reflow
+ }
+
+ that.$element
+ .addClass('in')
+ .attr('aria-hidden', false)
+
+ that.enforceFocus()
+
+ var e = $.Event('shown.bs.modal', { relatedTarget: _relatedTarget })
+
+ transition ?
+ that.$element.find('.modal-dialog') // wait for modal to slide in
+ .one('bsTransitionEnd', function () {
+ that.$element.trigger('focus').trigger(e)
+ })
+ .emulateTransitionEnd(300) :
+ that.$element.trigger('focus').trigger(e)
+ })
+ }
+
+ Modal.prototype.hide = function (e) {
+ if (e) e.preventDefault()
+
+ e = $.Event('hide.bs.modal')
+
+ this.$element.trigger(e)
+
+ if (!this.isShown || e.isDefaultPrevented()) return
+
+ this.isShown = false
+
+ this.$body.removeClass('modal-open')
+
+ this.resetScrollbar()
+ this.escape()
+
+ $(document).off('focusin.bs.modal')
+
+ this.$element
+ .removeClass('in')
+ .attr('aria-hidden', true)
+ .off('click.dismiss.bs.modal')
+
+ $.support.transition && this.$element.hasClass('fade') ?
+ this.$element
+ .one('bsTransitionEnd', $.proxy(this.hideModal, this))
+ .emulateTransitionEnd(300) :
+ this.hideModal()
+ }
+
+ Modal.prototype.enforceFocus = function () {
+ $(document)
+ .off('focusin.bs.modal') // guard against infinite focus loop
+ .on('focusin.bs.modal', $.proxy(function (e) {
+ if (this.$element[0] !== e.target && !this.$element.has(e.target).length) {
+ this.$element.trigger('focus')
+ }
+ }, this))
+ }
+
+ Modal.prototype.escape = function () {
+ if (this.isShown && this.options.keyboard) {
+ this.$element.on('keyup.dismiss.bs.modal', $.proxy(function (e) {
+ e.which == 27 && this.hide()
+ }, this))
+ } else if (!this.isShown) {
+ this.$element.off('keyup.dismiss.bs.modal')
+ }
+ }
+
+ Modal.prototype.hideModal = function () {
+ var that = this
+ this.$element.hide()
+ this.backdrop(function () {
+ that.$element.trigger('hidden.bs.modal')
+ })
+ }
+
+ Modal.prototype.removeBackdrop = function () {
+ this.$backdrop && this.$backdrop.remove()
+ this.$backdrop = null
+ }
+
+ Modal.prototype.backdrop = function (callback) {
+ var that = this
+ var animate = this.$element.hasClass('fade') ? 'fade' : ''
+
+ if (this.isShown && this.options.backdrop) {
+ var doAnimate = $.support.transition && animate
+
+ this.$backdrop = $('<div class="modal-backdrop ' + animate + '" />')
+ .appendTo(this.$body)
+
+ this.$element.on('click.dismiss.bs.modal', $.proxy(function (e) {
+ if (e.target !== e.currentTarget) return
+ this.options.backdrop == 'static'
+ ? this.$element[0].focus.call(this.$element[0])
+ : this.hide.call(this)
+ }, this))
+
+ if (doAnimate) this.$backdrop[0].offsetWidth // force reflow
+
+ this.$backdrop.addClass('in')
+
+ if (!callback) return
+
+ doAnimate ?
+ this.$backdrop
+ .one('bsTransitionEnd', callback)
+ .emulateTransitionEnd(150) :
+ callback()
+
+ } else if (!this.isShown && this.$backdrop) {
+ this.$backdrop.removeClass('in')
+
+ var callbackRemove = function () {
+ that.removeBackdrop()
+ callback && callback()
+ }
+ $.support.transition && this.$element.hasClass('fade') ?
+ this.$backdrop
+ .one('bsTransitionEnd', callbackRemove)
+ .emulateTransitionEnd(150) :
+ callbackRemove()
+
+ } else if (callback) {
+ callback()
+ }
+ }
+
+ Modal.prototype.checkScrollbar = function () {
+ if (document.body.clientWidth >= window.innerWidth) return
+ this.scrollbarWidth = this.scrollbarWidth || this.measureScrollbar()
+ }
+
+ Modal.prototype.setScrollbar = function () {
+ var bodyPad = parseInt((this.$body.css('padding-right') || 0), 10)
+ if (this.scrollbarWidth) this.$body.css('padding-right', bodyPad + this.scrollbarWidth)
+ }
+
+ Modal.prototype.resetScrollbar = function () {
+ this.$body.css('padding-right', '')
+ }
+
+ Modal.prototype.measureScrollbar = function () { // thx walsh
+ var scrollDiv = document.createElement('div')
+ scrollDiv.className = 'modal-scrollbar-measure'
+ this.$body.append(scrollDiv)
+ var scrollbarWidth = scrollDiv.offsetWidth - scrollDiv.clientWidth
+ this.$body[0].removeChild(scrollDiv)
+ return scrollbarWidth
+ }
+
+
+ // MODAL PLUGIN DEFINITION
+ // =======================
+
+ function Plugin(option, _relatedTarget) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.modal')
+ var options = $.extend({}, Modal.DEFAULTS, $this.data(), typeof option == 'object' && option)
+
+ if (!data) $this.data('bs.modal', (data = new Modal(this, options)))
+ if (typeof option == 'string') data[option](_relatedTarget)
+ else if (options.show) data.show(_relatedTarget)
+ })
+ }
+
+ var old = $.fn.modal
+
+ $.fn.modal = Plugin
+ $.fn.modal.Constructor = Modal
+
+
+ // MODAL NO CONFLICT
+ // =================
+
+ $.fn.modal.noConflict = function () {
+ $.fn.modal = old
+ return this
+ }
+
+
+ // MODAL DATA-API
+ // ==============
+
+ $(document).on('click.bs.modal.data-api', '[data-toggle="modal"]', function (e) {
+ var $this = $(this)
+ var href = $this.attr('href')
+ var $target = $($this.attr('data-target') || (href && href.replace(/.*(?=#[^\s]+$)/, ''))) // strip for ie7
+ var option = $target.data('bs.modal') ? 'toggle' : $.extend({ remote: !/#/.test(href) && href }, $target.data(), $this.data())
+
+ if ($this.is('a')) e.preventDefault()
+
+ $target.one('show.bs.modal', function (showEvent) {
+ if (showEvent.isDefaultPrevented()) return // only register focus restorer if modal will actually get shown
+ $target.one('hidden.bs.modal', function () {
+ $this.is(':visible') && $this.trigger('focus')
+ })
+ })
+ Plugin.call($target, option, this)
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: tooltip.js v3.2.0
+ * http://getbootstrap.com/javascript/#tooltip
+ * Inspired by the original jQuery.tipsy by Jason Frame
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // TOOLTIP PUBLIC CLASS DEFINITION
+ // ===============================
+
+ var Tooltip = function (element, options) {
+ this.type =
+ this.options =
+ this.enabled =
+ this.timeout =
+ this.hoverState =
+ this.$element = null
+
+ this.init('tooltip', element, options)
+ }
+
+ Tooltip.VERSION = '3.2.0'
+
+ Tooltip.DEFAULTS = {
+ animation: true,
+ placement: 'top',
+ selector: false,
+ template: '<div class="tooltip" role="tooltip"><div class="tooltip-arrow"></div><div class="tooltip-inner"></div></div>',
+ trigger: 'hover focus',
+ title: '',
+ delay: 0,
+ html: false,
+ container: false,
+ viewport: {
+ selector: 'body',
+ padding: 0
+ }
+ }
+
+ Tooltip.prototype.init = function (type, element, options) {
+ this.enabled = true
+ this.type = type
+ this.$element = $(element)
+ this.options = this.getOptions(options)
+ this.$viewport = this.options.viewport && $(this.options.viewport.selector || this.options.viewport)
+
+ var triggers = this.options.trigger.split(' ')
+
+ for (var i = triggers.length; i--;) {
+ var trigger = triggers[i]
+
+ if (trigger == 'click') {
+ this.$element.on('click.' + this.type, this.options.selector, $.proxy(this.toggle, this))
+ } else if (trigger != 'manual') {
+ var eventIn = trigger == 'hover' ? 'mouseenter' : 'focusin'
+ var eventOut = trigger == 'hover' ? 'mouseleave' : 'focusout'
+
+ this.$element.on(eventIn + '.' + this.type, this.options.selector, $.proxy(this.enter, this))
+ this.$element.on(eventOut + '.' + this.type, this.options.selector, $.proxy(this.leave, this))
+ }
+ }
+
+ this.options.selector ?
+ (this._options = $.extend({}, this.options, { trigger: 'manual', selector: '' })) :
+ this.fixTitle()
+ }
+
+ Tooltip.prototype.getDefaults = function () {
+ return Tooltip.DEFAULTS
+ }
+
+ Tooltip.prototype.getOptions = function (options) {
+ options = $.extend({}, this.getDefaults(), this.$element.data(), options)
+
+ if (options.delay && typeof options.delay == 'number') {
+ options.delay = {
+ show: options.delay,
+ hide: options.delay
+ }
+ }
+
+ return options
+ }
+
+ Tooltip.prototype.getDelegateOptions = function () {
+ var options = {}
+ var defaults = this.getDefaults()
+
+ this._options && $.each(this._options, function (key, value) {
+ if (defaults[key] != value) options[key] = value
+ })
+
+ return options
+ }
+
+ Tooltip.prototype.enter = function (obj) {
+ var self = obj instanceof this.constructor ?
+ obj : $(obj.currentTarget).data('bs.' + this.type)
+
+ if (!self) {
+ self = new this.constructor(obj.currentTarget, this.getDelegateOptions())
+ $(obj.currentTarget).data('bs.' + this.type, self)
+ }
+
+ clearTimeout(self.timeout)
+
+ self.hoverState = 'in'
+
+ if (!self.options.delay || !self.options.delay.show) return self.show()
+
+ self.timeout = setTimeout(function () {
+ if (self.hoverState == 'in') self.show()
+ }, self.options.delay.show)
+ }
+
+ Tooltip.prototype.leave = function (obj) {
+ var self = obj instanceof this.constructor ?
+ obj : $(obj.currentTarget).data('bs.' + this.type)
+
+ if (!self) {
+ self = new this.constructor(obj.currentTarget, this.getDelegateOptions())
+ $(obj.currentTarget).data('bs.' + this.type, self)
+ }
+
+ clearTimeout(self.timeout)
+
+ self.hoverState = 'out'
+
+ if (!self.options.delay || !self.options.delay.hide) return self.hide()
+
+ self.timeout = setTimeout(function () {
+ if (self.hoverState == 'out') self.hide()
+ }, self.options.delay.hide)
+ }
+
+ Tooltip.prototype.show = function () {
+ var e = $.Event('show.bs.' + this.type)
+
+ if (this.hasContent() && this.enabled) {
+ this.$element.trigger(e)
+
+ var inDom = $.contains(document.documentElement, this.$element[0])
+ if (e.isDefaultPrevented() || !inDom) return
+ var that = this
+
+ var $tip = this.tip()
+
+ var tipId = this.getUID(this.type)
+
+ this.setContent()
+ $tip.attr('id', tipId)
+ this.$element.attr('aria-describedby', tipId)
+
+ if (this.options.animation) $tip.addClass('fade')
+
+ var placement = typeof this.options.placement == 'function' ?
+ this.options.placement.call(this, $tip[0], this.$element[0]) :
+ this.options.placement
+
+ var autoToken = /\s?auto?\s?/i
+ var autoPlace = autoToken.test(placement)
+ if (autoPlace) placement = placement.replace(autoToken, '') || 'top'
+
+ $tip
+ .detach()
+ .css({ top: 0, left: 0, display: 'block' })
+ .addClass(placement)
+ .data('bs.' + this.type, this)
+
+ this.options.container ? $tip.appendTo(this.options.container) : $tip.insertAfter(this.$element)
+
+ var pos = this.getPosition()
+ var actualWidth = $tip[0].offsetWidth
+ var actualHeight = $tip[0].offsetHeight
+
+ if (autoPlace) {
+ var orgPlacement = placement
+ var $parent = this.$element.parent()
+ var parentDim = this.getPosition($parent)
+
+ placement = placement == 'bottom' && pos.top + pos.height + actualHeight - parentDim.scroll > parentDim.height ? 'top' :
+ placement == 'top' && pos.top - parentDim.scroll - actualHeight < 0 ? 'bottom' :
+ placement == 'right' && pos.right + actualWidth > parentDim.width ? 'left' :
+ placement == 'left' && pos.left - actualWidth < parentDim.left ? 'right' :
+ placement
+
+ $tip
+ .removeClass(orgPlacement)
+ .addClass(placement)
+ }
+
+ var calculatedOffset = this.getCalculatedOffset(placement, pos, actualWidth, actualHeight)
+
+ this.applyPlacement(calculatedOffset, placement)
+
+ var complete = function () {
+ that.$element.trigger('shown.bs.' + that.type)
+ that.hoverState = null
+ }
+
+ $.support.transition && this.$tip.hasClass('fade') ?
+ $tip
+ .one('bsTransitionEnd', complete)
+ .emulateTransitionEnd(150) :
+ complete()
+ }
+ }
+
+ Tooltip.prototype.applyPlacement = function (offset, placement) {
+ var $tip = this.tip()
+ var width = $tip[0].offsetWidth
+ var height = $tip[0].offsetHeight
+
+ // manually read margins because getBoundingClientRect includes difference
+ var marginTop = parseInt($tip.css('margin-top'), 10)
+ var marginLeft = parseInt($tip.css('margin-left'), 10)
+
+ // we must check for NaN for ie 8/9
+ if (isNaN(marginTop)) marginTop = 0
+ if (isNaN(marginLeft)) marginLeft = 0
+
+ offset.top = offset.top + marginTop
+ offset.left = offset.left + marginLeft
+
+ // $.fn.offset doesn't round pixel values
+ // so we use setOffset directly with our own function B-0
+ $.offset.setOffset($tip[0], $.extend({
+ using: function (props) {
+ $tip.css({
+ top: Math.round(props.top),
+ left: Math.round(props.left)
+ })
+ }
+ }, offset), 0)
+
+ $tip.addClass('in')
+
+ // check to see if placing tip in new offset caused the tip to resize itself
+ var actualWidth = $tip[0].offsetWidth
+ var actualHeight = $tip[0].offsetHeight
+
+ if (placement == 'top' && actualHeight != height) {
+ offset.top = offset.top + height - actualHeight
+ }
+
+ var delta = this.getViewportAdjustedDelta(placement, offset, actualWidth, actualHeight)
+
+ if (delta.left) offset.left += delta.left
+ else offset.top += delta.top
+
+ var arrowDelta = delta.left ? delta.left * 2 - width + actualWidth : delta.top * 2 - height + actualHeight
+ var arrowPosition = delta.left ? 'left' : 'top'
+ var arrowOffsetPosition = delta.left ? 'offsetWidth' : 'offsetHeight'
+
+ $tip.offset(offset)
+ this.replaceArrow(arrowDelta, $tip[0][arrowOffsetPosition], arrowPosition)
+ }
+
+ Tooltip.prototype.replaceArrow = function (delta, dimension, position) {
+ this.arrow().css(position, delta ? (50 * (1 - delta / dimension) + '%') : '')
+ }
+
+ Tooltip.prototype.setContent = function () {
+ var $tip = this.tip()
+ var title = this.getTitle()
+
+ $tip.find('.tooltip-inner')[this.options.html ? 'html' : 'text'](title)
+ $tip.removeClass('fade in top bottom left right')
+ }
+
+ Tooltip.prototype.hide = function () {
+ var that = this
+ var $tip = this.tip()
+ var e = $.Event('hide.bs.' + this.type)
+
+ this.$element.removeAttr('aria-describedby')
+
+ function complete() {
+ if (that.hoverState != 'in') $tip.detach()
+ that.$element.trigger('hidden.bs.' + that.type)
+ }
+
+ this.$element.trigger(e)
+
+ if (e.isDefaultPrevented()) return
+
+ $tip.removeClass('in')
+
+ $.support.transition && this.$tip.hasClass('fade') ?
+ $tip
+ .one('bsTransitionEnd', complete)
+ .emulateTransitionEnd(150) :
+ complete()
+
+ this.hoverState = null
+
+ return this
+ }
+
+ Tooltip.prototype.fixTitle = function () {
+ var $e = this.$element
+ if ($e.attr('title') || typeof ($e.attr('data-original-title')) != 'string') {
+ $e.attr('data-original-title', $e.attr('title') || '').attr('title', '')
+ }
+ }
+
+ Tooltip.prototype.hasContent = function () {
+ return this.getTitle()
+ }
+
+ Tooltip.prototype.getPosition = function ($element) {
+ $element = $element || this.$element
+ var el = $element[0]
+ var isBody = el.tagName == 'BODY'
+ return $.extend({}, (typeof el.getBoundingClientRect == 'function') ? el.getBoundingClientRect() : null, {
+ scroll: isBody ? document.documentElement.scrollTop || document.body.scrollTop : $element.scrollTop(),
+ width: isBody ? $(window).width() : $element.outerWidth(),
+ height: isBody ? $(window).height() : $element.outerHeight()
+ }, isBody ? { top: 0, left: 0 } : $element.offset())
+ }
+
+ Tooltip.prototype.getCalculatedOffset = function (placement, pos, actualWidth, actualHeight) {
+ return placement == 'bottom' ? { top: pos.top + pos.height, left: pos.left + pos.width / 2 - actualWidth / 2 } :
+ placement == 'top' ? { top: pos.top - actualHeight, left: pos.left + pos.width / 2 - actualWidth / 2 } :
+ placement == 'left' ? { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left - actualWidth } :
+ /* placement == 'right' */ { top: pos.top + pos.height / 2 - actualHeight / 2, left: pos.left + pos.width }
+
+ }
+
+ Tooltip.prototype.getViewportAdjustedDelta = function (placement, pos, actualWidth, actualHeight) {
+ var delta = { top: 0, left: 0 }
+ if (!this.$viewport) return delta
+
+ var viewportPadding = this.options.viewport && this.options.viewport.padding || 0
+ var viewportDimensions = this.getPosition(this.$viewport)
+
+ if (/right|left/.test(placement)) {
+ var topEdgeOffset = pos.top - viewportPadding - viewportDimensions.scroll
+ var bottomEdgeOffset = pos.top + viewportPadding - viewportDimensions.scroll + actualHeight
+ if (topEdgeOffset < viewportDimensions.top) { // top overflow
+ delta.top = viewportDimensions.top - topEdgeOffset
+ } else if (bottomEdgeOffset > viewportDimensions.top + viewportDimensions.height) { // bottom overflow
+ delta.top = viewportDimensions.top + viewportDimensions.height - bottomEdgeOffset
+ }
+ } else {
+ var leftEdgeOffset = pos.left - viewportPadding
+ var rightEdgeOffset = pos.left + viewportPadding + actualWidth
+ if (leftEdgeOffset < viewportDimensions.left) { // left overflow
+ delta.left = viewportDimensions.left - leftEdgeOffset
+ } else if (rightEdgeOffset > viewportDimensions.width) { // right overflow
+ delta.left = viewportDimensions.left + viewportDimensions.width - rightEdgeOffset
+ }
+ }
+
+ return delta
+ }
+
+ Tooltip.prototype.getTitle = function () {
+ var title
+ var $e = this.$element
+ var o = this.options
+
+ title = $e.attr('data-original-title')
+ || (typeof o.title == 'function' ? o.title.call($e[0]) : o.title)
+
+ return title
+ }
+
+ Tooltip.prototype.getUID = function (prefix) {
+ do prefix += ~~(Math.random() * 1000000)
+ while (document.getElementById(prefix))
+ return prefix
+ }
+
+ Tooltip.prototype.tip = function () {
+ return (this.$tip = this.$tip || $(this.options.template))
+ }
+
+ Tooltip.prototype.arrow = function () {
+ return (this.$arrow = this.$arrow || this.tip().find('.tooltip-arrow'))
+ }
+
+ Tooltip.prototype.validate = function () {
+ if (!this.$element[0].parentNode) {
+ this.hide()
+ this.$element = null
+ this.options = null
+ }
+ }
+
+ Tooltip.prototype.enable = function () {
+ this.enabled = true
+ }
+
+ Tooltip.prototype.disable = function () {
+ this.enabled = false
+ }
+
+ Tooltip.prototype.toggleEnabled = function () {
+ this.enabled = !this.enabled
+ }
+
+ Tooltip.prototype.toggle = function (e) {
+ var self = this
+ if (e) {
+ self = $(e.currentTarget).data('bs.' + this.type)
+ if (!self) {
+ self = new this.constructor(e.currentTarget, this.getDelegateOptions())
+ $(e.currentTarget).data('bs.' + this.type, self)
+ }
+ }
+
+ self.tip().hasClass('in') ? self.leave(self) : self.enter(self)
+ }
+
+ Tooltip.prototype.destroy = function () {
+ clearTimeout(this.timeout)
+ this.hide().$element.off('.' + this.type).removeData('bs.' + this.type)
+ }
+
+
+ // TOOLTIP PLUGIN DEFINITION
+ // =========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.tooltip')
+ var options = typeof option == 'object' && option
+
+ if (!data && option == 'destroy') return
+ if (!data) $this.data('bs.tooltip', (data = new Tooltip(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ var old = $.fn.tooltip
+
+ $.fn.tooltip = Plugin
+ $.fn.tooltip.Constructor = Tooltip
+
+
+ // TOOLTIP NO CONFLICT
+ // ===================
+
+ $.fn.tooltip.noConflict = function () {
+ $.fn.tooltip = old
+ return this
+ }
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: popover.js v3.2.0
+ * http://getbootstrap.com/javascript/#popovers
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // POPOVER PUBLIC CLASS DEFINITION
+ // ===============================
+
+ var Popover = function (element, options) {
+ this.init('popover', element, options)
+ }
+
+ if (!$.fn.tooltip) throw new Error('Popover requires tooltip.js')
+
+ Popover.VERSION = '3.2.0'
+
+ Popover.DEFAULTS = $.extend({}, $.fn.tooltip.Constructor.DEFAULTS, {
+ placement: 'right',
+ trigger: 'click',
+ content: '',
+ template: '<div class="popover" role="tooltip"><div class="arrow"></div><h3 class="popover-title"></h3><div class="popover-content"></div></div>'
+ })
+
+
+ // NOTE: POPOVER EXTENDS tooltip.js
+ // ================================
+
+ Popover.prototype = $.extend({}, $.fn.tooltip.Constructor.prototype)
+
+ Popover.prototype.constructor = Popover
+
+ Popover.prototype.getDefaults = function () {
+ return Popover.DEFAULTS
+ }
+
+ Popover.prototype.setContent = function () {
+ var $tip = this.tip()
+ var title = this.getTitle()
+ var content = this.getContent()
+
+ $tip.find('.popover-title')[this.options.html ? 'html' : 'text'](title)
+ $tip.find('.popover-content').empty()[ // we use append for html objects to maintain js events
+ this.options.html ? (typeof content == 'string' ? 'html' : 'append') : 'text'
+ ](content)
+
+ $tip.removeClass('fade top bottom left right in')
+
+ // IE8 doesn't accept hiding via the `:empty` pseudo selector, we have to do
+ // this manually by checking the contents.
+ if (!$tip.find('.popover-title').html()) $tip.find('.popover-title').hide()
+ }
+
+ Popover.prototype.hasContent = function () {
+ return this.getTitle() || this.getContent()
+ }
+
+ Popover.prototype.getContent = function () {
+ var $e = this.$element
+ var o = this.options
+
+ return $e.attr('data-content')
+ || (typeof o.content == 'function' ?
+ o.content.call($e[0]) :
+ o.content)
+ }
+
+ Popover.prototype.arrow = function () {
+ return (this.$arrow = this.$arrow || this.tip().find('.arrow'))
+ }
+
+ Popover.prototype.tip = function () {
+ if (!this.$tip) this.$tip = $(this.options.template)
+ return this.$tip
+ }
+
+
+ // POPOVER PLUGIN DEFINITION
+ // =========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.popover')
+ var options = typeof option == 'object' && option
+
+ if (!data && option == 'destroy') return
+ if (!data) $this.data('bs.popover', (data = new Popover(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ var old = $.fn.popover
+
+ $.fn.popover = Plugin
+ $.fn.popover.Constructor = Popover
+
+
+ // POPOVER NO CONFLICT
+ // ===================
+
+ $.fn.popover.noConflict = function () {
+ $.fn.popover = old
+ return this
+ }
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: scrollspy.js v3.2.0
+ * http://getbootstrap.com/javascript/#scrollspy
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // SCROLLSPY CLASS DEFINITION
+ // ==========================
+
+ function ScrollSpy(element, options) {
+ var process = $.proxy(this.process, this)
+
+ this.$body = $('body')
+ this.$scrollElement = $(element).is('body') ? $(window) : $(element)
+ this.options = $.extend({}, ScrollSpy.DEFAULTS, options)
+ this.selector = (this.options.target || '') + ' .nav li > a'
+ this.offsets = []
+ this.targets = []
+ this.activeTarget = null
+ this.scrollHeight = 0
+
+ this.$scrollElement.on('scroll.bs.scrollspy', process)
+ this.refresh()
+ this.process()
+ }
+
+ ScrollSpy.VERSION = '3.2.0'
+
+ ScrollSpy.DEFAULTS = {
+ offset: 10
+ }
+
+ ScrollSpy.prototype.getScrollHeight = function () {
+ return this.$scrollElement[0].scrollHeight || Math.max(this.$body[0].scrollHeight, document.documentElement.scrollHeight)
+ }
+
+ ScrollSpy.prototype.refresh = function () {
+ var offsetMethod = 'offset'
+ var offsetBase = 0
+
+ if (!$.isWindow(this.$scrollElement[0])) {
+ offsetMethod = 'position'
+ offsetBase = this.$scrollElement.scrollTop()
+ }
+
+ this.offsets = []
+ this.targets = []
+ this.scrollHeight = this.getScrollHeight()
+
+ var self = this
+
+ this.$body
+ .find(this.selector)
+ .map(function () {
+ var $el = $(this)
+ var href = $el.data('target') || $el.attr('href')
+ var $href = /^#./.test(href) && $(href)
+
+ return ($href
+ && $href.length
+ && $href.is(':visible')
+ && [[$href[offsetMethod]().top + offsetBase, href]]) || null
+ })
+ .sort(function (a, b) { return a[0] - b[0] })
+ .each(function () {
+ self.offsets.push(this[0])
+ self.targets.push(this[1])
+ })
+ }
+
+ ScrollSpy.prototype.process = function () {
+ var scrollTop = this.$scrollElement.scrollTop() + this.options.offset
+ var scrollHeight = this.getScrollHeight()
+ var maxScroll = this.options.offset + scrollHeight - this.$scrollElement.height()
+ var offsets = this.offsets
+ var targets = this.targets
+ var activeTarget = this.activeTarget
+ var i
+
+ if (this.scrollHeight != scrollHeight) {
+ this.refresh()
+ }
+
+ if (scrollTop >= maxScroll) {
+ return activeTarget != (i = targets[targets.length - 1]) && this.activate(i)
+ }
+
+ if (activeTarget && scrollTop <= offsets[0]) {
+ return activeTarget != (i = targets[0]) && this.activate(i)
+ }
+
+ for (i = offsets.length; i--;) {
+ activeTarget != targets[i]
+ && scrollTop >= offsets[i]
+ && (!offsets[i + 1] || scrollTop <= offsets[i + 1])
+ && this.activate(targets[i])
+ }
+ }
+
+ ScrollSpy.prototype.activate = function (target) {
+ this.activeTarget = target
+
+ $(this.selector)
+ .parentsUntil(this.options.target, '.active')
+ .removeClass('active')
+
+ var selector = this.selector +
+ '[data-target="' + target + '"],' +
+ this.selector + '[href="' + target + '"]'
+
+ var active = $(selector)
+ .parents('li')
+ .addClass('active')
+
+ if (active.parent('.dropdown-menu').length) {
+ active = active
+ .closest('li.dropdown')
+ .addClass('active')
+ }
+
+ active.trigger('activate.bs.scrollspy')
+ }
+
+
+ // SCROLLSPY PLUGIN DEFINITION
+ // ===========================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.scrollspy')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.scrollspy', (data = new ScrollSpy(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ var old = $.fn.scrollspy
+
+ $.fn.scrollspy = Plugin
+ $.fn.scrollspy.Constructor = ScrollSpy
+
+
+ // SCROLLSPY NO CONFLICT
+ // =====================
+
+ $.fn.scrollspy.noConflict = function () {
+ $.fn.scrollspy = old
+ return this
+ }
+
+
+ // SCROLLSPY DATA-API
+ // ==================
+
+ $(window).on('load.bs.scrollspy.data-api', function () {
+ $('[data-spy="scroll"]').each(function () {
+ var $spy = $(this)
+ Plugin.call($spy, $spy.data())
+ })
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: tab.js v3.2.0
+ * http://getbootstrap.com/javascript/#tabs
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // TAB CLASS DEFINITION
+ // ====================
+
+ var Tab = function (element) {
+ this.element = $(element)
+ }
+
+ Tab.VERSION = '3.2.0'
+
+ Tab.prototype.show = function () {
+ var $this = this.element
+ var $ul = $this.closest('ul:not(.dropdown-menu)')
+ var selector = $this.data('target')
+
+ if (!selector) {
+ selector = $this.attr('href')
+ selector = selector && selector.replace(/.*(?=#[^\s]*$)/, '') // strip for ie7
+ }
+
+ if ($this.parent('li').hasClass('active')) return
+
+ var previous = $ul.find('.active:last a')[0]
+ var e = $.Event('show.bs.tab', {
+ relatedTarget: previous
+ })
+
+ $this.trigger(e)
+
+ if (e.isDefaultPrevented()) return
+
+ var $target = $(selector)
+
+ this.activate($this.closest('li'), $ul)
+ this.activate($target, $target.parent(), function () {
+ $this.trigger({
+ type: 'shown.bs.tab',
+ relatedTarget: previous
+ })
+ })
+ }
+
+ Tab.prototype.activate = function (element, container, callback) {
+ var $active = container.find('> .active')
+ var transition = callback
+ && $.support.transition
+ && $active.hasClass('fade')
+
+ function next() {
+ $active
+ .removeClass('active')
+ .find('> .dropdown-menu > .active')
+ .removeClass('active')
+
+ element.addClass('active')
+
+ if (transition) {
+ element[0].offsetWidth // reflow for transition
+ element.addClass('in')
+ } else {
+ element.removeClass('fade')
+ }
+
+ if (element.parent('.dropdown-menu')) {
+ element.closest('li.dropdown').addClass('active')
+ }
+
+ callback && callback()
+ }
+
+ transition ?
+ $active
+ .one('bsTransitionEnd', next)
+ .emulateTransitionEnd(150) :
+ next()
+
+ $active.removeClass('in')
+ }
+
+
+ // TAB PLUGIN DEFINITION
+ // =====================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.tab')
+
+ if (!data) $this.data('bs.tab', (data = new Tab(this)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ var old = $.fn.tab
+
+ $.fn.tab = Plugin
+ $.fn.tab.Constructor = Tab
+
+
+ // TAB NO CONFLICT
+ // ===============
+
+ $.fn.tab.noConflict = function () {
+ $.fn.tab = old
+ return this
+ }
+
+
+ // TAB DATA-API
+ // ============
+
+ $(document).on('click.bs.tab.data-api', '[data-toggle="tab"], [data-toggle="pill"]', function (e) {
+ e.preventDefault()
+ Plugin.call($(this), 'show')
+ })
+
+}(jQuery);
+
+/* ========================================================================
+ * Bootstrap: affix.js v3.2.0
+ * http://getbootstrap.com/javascript/#affix
+ * ========================================================================
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ * ======================================================================== */
+
+
++function ($) {
+ 'use strict';
+
+ // AFFIX CLASS DEFINITION
+ // ======================
+
+ var Affix = function (element, options) {
+ this.options = $.extend({}, Affix.DEFAULTS, options)
+
+ this.$target = $(this.options.target)
+ .on('scroll.bs.affix.data-api', $.proxy(this.checkPosition, this))
+ .on('click.bs.affix.data-api', $.proxy(this.checkPositionWithEventLoop, this))
+
+ this.$element = $(element)
+ this.affixed =
+ this.unpin =
+ this.pinnedOffset = null
+
+ this.checkPosition()
+ }
+
+ Affix.VERSION = '3.2.0'
+
+ Affix.RESET = 'affix affix-top affix-bottom'
+
+ Affix.DEFAULTS = {
+ offset: 0,
+ target: window
+ }
+
+ Affix.prototype.getPinnedOffset = function () {
+ if (this.pinnedOffset) return this.pinnedOffset
+ this.$element.removeClass(Affix.RESET).addClass('affix')
+ var scrollTop = this.$target.scrollTop()
+ var position = this.$element.offset()
+ return (this.pinnedOffset = position.top - scrollTop)
+ }
+
+ Affix.prototype.checkPositionWithEventLoop = function () {
+ setTimeout($.proxy(this.checkPosition, this), 1)
+ }
+
+ Affix.prototype.checkPosition = function () {
+ if (!this.$element.is(':visible')) return
+
+ var scrollHeight = $(document).height()
+ var scrollTop = this.$target.scrollTop()
+ var position = this.$element.offset()
+ var offset = this.options.offset
+ var offsetTop = offset.top
+ var offsetBottom = offset.bottom
+
+ if (typeof offset != 'object') offsetBottom = offsetTop = offset
+ if (typeof offsetTop == 'function') offsetTop = offset.top(this.$element)
+ if (typeof offsetBottom == 'function') offsetBottom = offset.bottom(this.$element)
+
+ var affix = this.unpin != null && (scrollTop + this.unpin <= position.top) ? false :
+ offsetBottom != null && (position.top + this.$element.height() >= scrollHeight - offsetBottom) ? 'bottom' :
+ offsetTop != null && (scrollTop <= offsetTop) ? 'top' : false
+
+ if (this.affixed === affix) return
+ if (this.unpin != null) this.$element.css('top', '')
+
+ var affixType = 'affix' + (affix ? '-' + affix : '')
+ var e = $.Event(affixType + '.bs.affix')
+
+ this.$element.trigger(e)
+
+ if (e.isDefaultPrevented()) return
+
+ this.affixed = affix
+ this.unpin = affix == 'bottom' ? this.getPinnedOffset() : null
+
+ this.$element
+ .removeClass(Affix.RESET)
+ .addClass(affixType)
+ .trigger($.Event(affixType.replace('affix', 'affixed')))
+
+ if (affix == 'bottom') {
+ this.$element.offset({
+ top: scrollHeight - this.$element.height() - offsetBottom
+ })
+ }
+ }
+
+
+ // AFFIX PLUGIN DEFINITION
+ // =======================
+
+ function Plugin(option) {
+ return this.each(function () {
+ var $this = $(this)
+ var data = $this.data('bs.affix')
+ var options = typeof option == 'object' && option
+
+ if (!data) $this.data('bs.affix', (data = new Affix(this, options)))
+ if (typeof option == 'string') data[option]()
+ })
+ }
+
+ var old = $.fn.affix
+
+ $.fn.affix = Plugin
+ $.fn.affix.Constructor = Affix
+
+
+ // AFFIX NO CONFLICT
+ // =================
+
+ $.fn.affix.noConflict = function () {
+ $.fn.affix = old
+ return this
+ }
+
+
+ // AFFIX DATA-API
+ // ==============
+
+ $(window).on('load', function () {
+ $('[data-spy="affix"]').each(function () {
+ var $spy = $(this)
+ var data = $spy.data()
+
+ data.offset = data.offset || {}
+
+ if (data.offsetBottom) data.offset.bottom = data.offsetBottom
+ if (data.offsetTop) data.offset.top = data.offsetTop
+
+ Plugin.call($spy, data)
+ })
+ })
+
+}(jQuery);
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.min.js
new file mode 100644
index 00000000000..7c1561a8b96
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrap3/js/bootstrap.min.js
@@ -0,0 +1,6 @@
+/*!
+ * Bootstrap v3.2.0 (http://getbootstrap.com)
+ * Copyright 2011-2014 Twitter, Inc.
+ * Licensed under MIT (https://github.com/twbs/bootstrap/blob/master/LICENSE)
+ */
+if("undefined"==typeof jQuery)throw new Error("Bootstrap's JavaScript requires jQuery");+function(a){"use strict";function b(){var a=document.createElement("bootstrap"),b={WebkitTransition:"webkitTransitionEnd",MozTransition:"transitionend",OTransition:"oTransitionEnd otransitionend",transition:"transitionend"};for(var c in b)if(void 0!==a.style[c])return{end:b[c]};return!1}a.fn.emulateTransitionEnd=function(b){var c=!1,d=this;a(this).one("bsTransitionEnd",function(){c=!0});var e=function(){c||a(d).trigger(a.support.transition.end)};return setTimeout(e,b),this},a(function(){a.support.transition=b(),a.support.transition&&(a.event.special.bsTransitionEnd={bindType:a.support.transition.end,delegateType:a.support.transition.end,handle:function(b){return a(b.target).is(this)?b.handleObj.handler.apply(this,arguments):void 0}})})}(jQuery),+function(a){"use strict";function b(b){return this.each(function(){var c=a(this),e=c.data("bs.alert");e||c.data("bs.alert",e=new d(this)),"string"==typeof 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\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/css/bootstrapValidator.min.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/css/bootstrapValidator.min.css
new file mode 100644
index 00000000000..70c1136cf5f
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/css/bootstrapValidator.min.css
@@ -0,0 +1,13 @@
+/**
+ * BootstrapValidator (http://bootstrapvalidator.com)
+ *
+ * A jQuery plugin to validate form fields. Use with Bootstrap 3
+ *
+ * @version v0.4.4
+ * @author https://twitter.com/nghuuphuoc
+ * @copyright (c) 2013 - 2014 Nguyen Huu Phuoc
+ * @license MIT
+ */
+
+
+.bv-form .help-block{margin-bottom:0}.nav-tabs li.bv-tab-success>a{color:#3c763d}.nav-tabs li.bv-tab-error>a{color:#a94442}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/js/bootstrapValidator.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/js/bootstrapValidator.min.js
new file mode 100644
index 00000000000..08e2906447c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/bootstrapvalidator/js/bootstrapValidator.min.js
@@ -0,0 +1,13 @@
+/**
+ * BootstrapValidator (http://bootstrapvalidator.com)
+ *
+ * A jQuery plugin to validate form fields. Use with Bootstrap 3
+ *
+ * @version v0.4.4
+ * @author https://twitter.com/nghuuphuoc
+ * @copyright (c) 2013 - 2014 Nguyen Huu Phuoc
+ * @license MIT
+ */
+
+!function(a){var b=function(c,d){this.$form=a(c),this.options=a.extend({},b.DEFAULT_OPTIONS,d),this.$invalidField=null,this.$submitButton=null,this.STATUS_NOT_VALIDATED="NOT_VALIDATED",this.STATUS_VALIDATING="VALIDATING",this.STATUS_INVALID="INVALID",this.STATUS_VALID="VALID";var e=function(){for(var a=3,b=document.createElement("div"),c=b.all||[];b.innerHTML="<!--[if gt IE "+ ++a+"]><br><![endif]-->",c[0];);return a>4?a:!a}(),f=document.createElement("div");this._changeEvent=9!==e&&"oninput"in f?"input":"keyup",this._submitIfValid=null,this._init()};b.DEFAULT_OPTIONS={elementClass:"bv-form",message:"This value is not valid",excluded:[":disabled",":hidden",":not(:visible)"],feedbackIcons:{valid:null,invalid:null,validating:null},submitButtons:'button[type="submit"]',submitHandler:null,live:"enabled",fields:null},b.prototype={constructor:b,_init:function(){var 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k=i.attr("name")||i.attr("data-bv-field");i.attr("data-bv-field",k),j.fields[k]=a.extend({},{trigger:i.attr("data-bv-trigger"),message:i.attr("data-bv-message"),container:i.attr("data-bv-container"),selector:i.attr("data-bv-selector"),validators:{}},j.fields[k]);for(c in a.fn.bootstrapValidator.validators)if(b=a.fn.bootstrapValidator.validators[c],d=i.attr("data-bv-"+c.toLowerCase())+"",h="function"==typeof b.enableByHtml5?b.enableByHtml5(a(this)):null,h&&"false"!=d||h!==!0&&(""==d||"true"==d)){b.html5Attributes=b.html5Attributes||{message:"message"},j.fields[k].validators[c]=a.extend({},1==h?{}:h,j.fields[k].validators[c]);for(g in b.html5Attributes)e=b.html5Attributes[g],f=i.attr("data-bv-"+c.toLowerCase()+"-"+g),f&&("true"==f?f=!0:"false"==f&&(f=!1),j.fields[k].validators[c][e]=f)}}}),this.options=a.extend(!0,this.options,j),"string"==typeof this.options.excluded&&(this.options.excluded=a.map(this.options.excluded.split(","),function(b){return a.trim(b)}));for(var k in this.options.fields)this._initField(k);this.setLiveMode(this.options.live)},_initField:function(b){if(null!=this.options.fields[b]&&null!=this.options.fields[b].validators){var c=this.getFieldElements(b);if(null==c)return void delete this.options.fields[b];for(var d in this.options.fields[b].validators)a.fn.bootstrapValidator.validators[d]||delete this.options.fields[b].validators[d];for(var e=this,f=c.attr("type"),g="radio"==f||"checkbox"==f||"file"==f||"SELECT"==c[0].tagName?"change":e._changeEvent,h=c.length,i=1==h||"radio"==f||"checkbox"==f,j=0;h>j;j++){var k=a(c[j]),l=k.parents(".form-group"),m=this.options.fields[b].container?l.find(this.options.fields[b].container):this._getMessageContainer(k);this.options.fields[b].selector&&k.attr("data-bv-field",b),k.on(g+".update.bv",function(){e._submitIfValid=!1,i?e.updateStatus(b,e.STATUS_NOT_VALIDATED,null):e.updateElementStatus(a(this),e.STATUS_NOT_VALIDATED,null)}),k.data("bv.messages",m);for(d in this.options.fields[b].validators)k.data("bv.result."+d,this.STATUS_NOT_VALIDATED),i&&j!=h-1||a("<small/>").css("display","none").attr("data-bv-validator",d).attr("data-bv-validator-for",b).html(this.options.fields[b].validators[d].message||this.options.fields[b].message||this.options.message).addClass("help-block").appendTo(m);if(this.options.feedbackIcons&&this.options.feedbackIcons.validating&&this.options.feedbackIcons.invalid&&this.options.feedbackIcons.valid&&(!i||j==h-1)){l.addClass("has-feedback");var n=a("<i/>").css("display","none").addClass("form-control-feedback").attr("data-bv-field",b).insertAfter(k);0==l.find("label").length&&n.css("top",0)}}null==this.options.fields[b].enabled&&(this.options.fields[b].enabled=!0)}},_getMessageContainer:function(a){var b=a.parent();if(b.hasClass("form-group"))return b;var c=b.attr("class");if(!c)return this._getMessageContainer(b);c=c.split(" ");for(var 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this.STATUS_VALID:d?i.filter('[data-bv-validator="'+d+'"]').hide():i.hide();var o=0==i.filter(function(){var c=a(this).css("display"),d=a(this).attr("data-bv-validator");return"block"==c||b.data("bv.result."+d)!=e.STATUS_VALID}).length;this.disableSubmitButtons(o?!1:!0),j&&j.removeClass(this.options.feedbackIcons.invalid).removeClass(this.options.feedbackIcons.validating).removeClass(this.options.feedbackIcons.valid).addClass(o?this.options.feedbackIcons.valid:this.options.feedbackIcons.invalid).show();var p=function(c){return 0==c.find(".help-block[data-bv-validator]").filter(function(){var c=a(this).css("display"),d=a(this).attr("data-bv-validator");return"block"==c||b.data("bv.result."+d)&&b.data("bv.result."+d)!=e.STATUS_VALID}).length};g.removeClass("has-error has-success").addClass(p(g)?"has-success":"has-error"),m&&m.removeClass("bv-tab-success").removeClass("bv-tab-error").addClass(p(n)?"bv-tab-success":"bv-tab-error");break;case 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f,g,h={AMERICAN_EXPRESS:{length:[15],prefix:["34","37"]},DINERS_CLUB:{length:[14],prefix:["300","301","302","303","304","305","36"]},DINERS_CLUB_US:{length:[16],prefix:["54","55"]},DISCOVER:{length:[16],prefix:["6011","622126","622127","622128","622129","62213","62214","62215","62216","62217","62218","62219","6222","6223","6224","6225","6226","6227","6228","62290","62291","622920","622921","622922","622923","622924","622925","644","645","646","647","648","649","65"]},JCB:{length:[16],prefix:["3528","3529","353","354","355","356","357","358"]},LASER:{length:[16,17,18,19],prefix:["6304","6706","6771","6709"]},MAESTRO:{length:[12,13,14,15,16,17,18,19],prefix:["5018","5020","5038","6304","6759","6761","6762","6763","6764","6765","6766"]},MASTERCARD:{length:[16],prefix:["51","52","53","54","55"]},SOLO:{length:[16,18,19],prefix:["6334","6767"]},UNIONPAY:{length:[16,17,18,19],prefix:["622126","622127","622128","622129","62213","62214","62215","62216","62217","62218","62219","6222","6223","6224","6225","6226","6227","6228","62290","62291","622920","622921","622922","622923","622924","622925"]},VISA:{length:[16],prefix:["4"]}},i=null;for(f 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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/index.html
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index 00000000000..fc6ef3a33fe
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/index.html
@@ -0,0 +1,175 @@
+<head>
+<title></title>
+<link rel="stylesheet" href="bootstrap3/css/bootstrap.min.css">
+<link rel="stylesheet"
+ href="bootstrapvalidator/css/bootstrapValidator.min.css">
+<link rel="stylesheet"
+ href="css/main.css">
+<script type="text/javascript" src="js/d3.v2.min.js"></script>
+<script type="text/javascript" src="js/jquery-1.8.2.min.js"></script>
+<script type="text/javascript" src="bootstrap3/js/bootstrap.min.js"></script>
+<script type="text/javascript" src="bootstrapvalidator/js/bootstrapValidator.min.js"></script>
+<script type="text/javascript" src="js/spin.min.js"></script>
+<script type="text/javascript" src="js/openbis.js"></script>
+<script type="text/javascript" src="js/openbis-dsu.js"></script>
+<script type="text/javascript" src="js/main.js"></script>
+
+<!-- To speed development, cache the requests -->
+<!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
+<script>
+
+ dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+ var vis;
+ var didCreateVis = false;
+ var context = new openbisWebAppContext();
+
+ $(document).ready(function () {
+ setValidators();
+ refresh();
+ setInterval(refresh, 600000);
+ });
+ </script>
+</head>
+<body>
+ <div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+
+ <h2>
+ Demultiplexing <small>QGF</small>
+ </h2>
+ </div>
+ </div>
+ </div>
+ <br>
+ <div class="container">
+ <div class="panel panel-default" id="lanePanel">
+ <div class="panel-heading">
+ <h3 class="panel-title">Choose Lane</h3>
+ </div>
+ <div class="panel-body">
+ <div class="container">
+ <div class="row">
+ <div class="col-sm-10">
+ <div class="checkbox">
+ <label> <input type="checkbox" id="allLanes"> Analyze all Lanes</label>
+ </div>
+ </div>
+ </div>
+ </div>
+ <script type="text/javascript">
+ $("#allLanes").change(function() {
+ if(this.checked) {
+ $('#laneRange').prop('disabled', true);
+ }else {
+ $('#laneRange').prop('disabled', false);
+ }
+ });
+ </script>
+ <form class="form-inline validatedField"" role="form" id="laneRangeForm">
+ <div class="form-group">
+ <div class="input-group">
+ <span class="input-group-addon">Lane Range</span>
+ <input type="text" class="form-control" id="laneRange" name="laneRange"
+ placeholder="1-3, 5, 7-8">
+ </div>
+ </div>
+ </form>
+ </div>
+ </div>
+ <script type="text/javascript"> $('#allLanes').prop('checked', true); $('#laneRange').prop('disabled', true);</script>
+
+ <div class="panel panel-default">
+ <div class="panel-heading">
+ <h3 class="panel-title">Options</h3>
+ </div>
+ <div class="panel-body">
+ <form class="form-horizontal" role="form">
+ <div class="form-group">
+ <div class="col-sm-10">
+ <div class="checkbox">
+ <label>
+ <input type="checkbox" id="sampleSheet">Recreate Sample Sheet
+ <span class="help-block">uses latest meta data from openBIS</span>
+ </label>
+ </div>
+ </div>
+ </div>
+ </form>
+ <script type="text/javascript"> $('#sampleSheet').prop('checked', true);</script>
+ <form class="form-horizontal" role="form">
+ <div class="form-group">
+ <div class="col-sm-10">
+ <div class="checkbox">
+ <label>
+ <input type="checkbox" id="failedReads">Include reads which do not pass the Illumina filter
+ <span class="help-block">Non PF reads are also in the FASTQ file</span>
+ </label>
+ </div>
+ </div>
+ </div>
+ </form>
+ <script type="text/javascript"> $('#failedReads').prop('checked', true);</script>
+
+ <form class="form-inline validatedField"" role="form" id="MismatchesInIndexForm">
+ <div class="form-group">
+ <div class="input-group">
+ <span class="input-group-addon">Allowed Index Mismatch</span>
+ <input type="text" class="form-control" id="indexMismatch" name="indexMismatch"
+ placeholder="0" value="0" >
+ </div>
+ </div>
+ </form>
+
+
+ <form class="form-horizontal" role="form">
+ <div class="form-group">
+ <div class="col-sm-10">
+ <div class="checkbox">
+ <label>
+ <input type="checkbox" id="email">Send Email when finished
+ <span class="help-block"> </span>
+ </label>
+ </div>
+ </div>
+ </div>
+ </form>
+
+ </div>
+ </div>
+ <br>
+ <p>
+ <div class="container">
+ <div class="row">
+ <div class="col-md-3">
+ <button class="btn btn-default" type="submit" id="submitBtn"
+ onclick="callIngestionService('startJob');">Start</button>
+ <button type="button" class="btn btn-default" onclick="refresh();">
+ <span class="glyphicon glyphicon-refresh"></span> Refresh
+ </button>
+ </div>
+ </div>
+ </div>
+ </p>
+ <br>
+ <!-- Placeholder for the output coming back from the server -->
+ <div class="container">
+ <div class="row">
+ <div class="col-lg-12">
+ <div id="main"></div>
+ </div>
+ </div>
+ </div>
+
+ <!-- Footer ================================================== -->
+
+ <footer class="bs-footer" role="contentinfo">
+ <h6 div class="container">
+ <a href="" target="_blank">Powered by ...</a>
+ </div>
+ </h6>
+ </footer>
+
+
+</body>
+</html>
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/main.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/main.js
new file mode 100644
index 00000000000..328ecd528a9
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/main.js
@@ -0,0 +1,180 @@
+
+function setValidators() {
+ $('#MismatchesInIndexForm').bootstrapValidator({
+ fields: {
+ indexMismatch: {
+ validators: {
+ regexp: {
+ regexp: /^(([0-1]))$/i,
+ message: 'The value is not 0 or 1'
+ }
+ }
+ }
+ }
+ });
+ $('#laneRangeForm').bootstrapValidator({
+ fields: {
+ laneRange: {
+ validators: {
+ regexp: {
+ regexp: /^(([1-8]+)|([1-8]+-[1-8]+))((,(\s*)(([1-8]+)|([1-8]+-[1-8]+)))*)$/i,
+ message: 'The value is not list of valid lanes or intervals.'
+ }
+ }
+ }
+ }
+ });
+}
+
+function createVis() {
+ if (didCreateVis) return;
+ vis = d3.select("#main").append("div").attr("id", "vis");
+ didCreateVis = true;
+}
+
+function enableSubmission() {
+ $('#submitBtn').prop('disabled', false);
+}
+
+function disableSubmission() {
+ $('#submitBtn').prop('disabled', true);
+}
+
+function displayReturnedTable(data) {
+ if (data.error) {
+ console.log(data.error);
+ vis.append("p").text("Could not retrieve data.");
+ return;
+ }
+
+ var dataToShow = data.result;
+ console.log(dataToShow.rows[0][0].value);
+
+ d3.select("#progress").remove()
+ d3.select("#button-group").remove()
+
+ vis.append("p").text("");
+ // Pick all div elements of the visualization
+ vis.selectAll("div").attr("class", "alert")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .attr("class", function (row) {
+ if (row[0].value == 0 || row[0].value > 99) {
+ if(row[0].value == 100)
+ enableSubmission();
+ if(row[0].value == 101)
+ disableSubmission();
+ return "alert alert-success";
+ }
+ return "alert alert-danger";
+ })
+ .html(function (row) {
+ return row[1].value;
+ })
+
+ var button = d3.select("#container")
+ .append("div")
+
+ button.selectAll("button")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .append("button")
+ .attr("id", function (row) {
+ return row[0].value;
+ })
+ .attr("class", function (row) {
+ if (row[0].value == 100) {
+ return "btn btn-success";
+ }
+ return "btn btn-danger";
+ })
+ //.attr("onclick", function(row) { return "callIngestionSetInvoice('" + row + "');" })
+ .text(function (row) {
+ if (row[0].value == 0) {
+ return "OK" ;
+ }
+ return "Fail";
+ });
+
+}
+
+function hideButtons(data) {
+ var buttonId = data.result.rows[0][0].value;
+ d3.select("#setInvoice").remove()
+ d3.select("#main").append("div").attr("id", "Done").append("p").text("Done " + buttonId);
+ d3.select("button#" + String(buttonId)).remove();
+}
+
+function spinner(target) {
+ var opts = {
+ lines: 13, // The number of lines to draw
+ length: 7, // The length of each line
+ width: 4, // The line thickness
+ radius: 10, // The radius of the inner circle
+ corners: 1, // Corner roundness (0..1)
+ rotate: 0, // The rotation offset
+ color: '#000', // #rgb or #rrggbb
+ speed: 1, // Rounds per second
+ trail: 60, // Afterglow percentage
+ shadow: false, // Whether to render a shadow
+ hwaccel: false, // Whether to use hardware acceleration
+ className: 'spinner', // The CSS class to assign to the spinner
+ zIndex: 2e9, // The z-index (defaults to 2000000000)
+ top: 250, // Top position relative to parent in px
+ left: 'auto' // Left position relative to parent in px
+ };
+ var spinner = new Spinner(opts).spin(target);
+}
+
+function callIngestionService(method) {
+ d3.select("#main").select("#progress").remove()
+ d3.select("#main").select("#vis").remove()
+
+ if(method == 'startJob') {
+ $('#laneRangeForm').data('bootstrapValidator').validate()
+ if(!$('#laneRangeForm').data('bootstrapValidator').isValid()) {
+ $('#laneRangeForm').focus();
+ return;
+ }
+ }
+
+ didCreateVis = false;
+ dsu.server.useSession(context.getSessionId());
+ createVis()
+
+
+ var permIdentifier = context.getEntityIdentifier()
+ myUserId = context.getSessionId().split("-")[0];
+
+ var submissionParameters =
+ {
+ sampleId: permIdentifier,
+ userId : myUserId,
+ method: method,
+ type : context.getEntityKind()
+ };
+ addProcessingParameters(submissionParameters);
+
+ console.log(submissionParameters)
+
+ var target = document.getElementById('progress');
+ spinner(target)
+// dsu.server.createReportFromAggregationService("DSS1", "triggerbee", submissionParameters, displayReturnedTable);
+}
+
+function addProcessingParameters(parameters) {
+ if($('#allLanes').is(':checked'))
+ parameters.laneRange = 'all';
+ else
+ parameters.laneRange = $('#laneRange').val();
+ parameters.sampleSheet = $('#sampleSheet').is(':checked');
+ parameters.failedReads = $('#failedReads').is(':checked');
+ parameters.mismatch = $('#indexMismatch').val();
+ parameters.email =$('#email').is(':checked');
+}
+
+function refresh() {
+ callIngestionService("pollJob")
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-action-deferrer.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-action-deferrer.js
new file mode 100644
index 00000000000..ee2e8171738
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-action-deferrer.js
@@ -0,0 +1,31 @@
+/**
+ * A utility class for deferring an action until all of some kind of action has completed
+ *
+ * @argument dependencies An array of the keys for the dependencies.
+ */
+
+function openbisActionDeferrer(pendingAction, dependencies) {
+ this.pendingAction = pendingAction;
+ this.dependencies = {};
+ var newme = this;
+ dependencies.forEach(function(key) {
+ newme.dependencies[key] = false;
+ });
+}
+
+/**
+ * Note that a dependency completed. Execute the pending action if appropriate.
+ */
+openbisActionDeferrer.prototype.dependencyCompleted = function(key) {
+ this.dependencies[key] = true;
+ var shouldExecute = true;
+ for (prop in this.dependencies) {
+ if (false == this.dependencies[prop]) {
+ shouldExecute = false;
+ break;
+ }
+ }
+ if (shouldExecute) {
+ this.pendingAction();
+ }
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-dsu.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-dsu.js
new file mode 100644
index 00000000000..52e7336254a
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-dsu.js
@@ -0,0 +1,103 @@
+/**
+ * openbis-dsu.js
+ * OpenBIS-DSU API
+ *
+ * A DSU-specific API for accessing openBIS. Depends on openbis.js.
+ * @author Chandrasekhar Ramakrishnan
+ */
+
+/**
+ * The openbis_dsu object provides a dsu-specific interface to openbis.
+ *
+ * It creates objects for projects, experiments, samples, and datasets. These objects
+ * are designed to be passed on to GUI libraries (like d3). The openbis version of each
+ * object is stored in the bis variable.
+ * @constructor
+ */
+function openbis_dsu(url, dssUrl) {
+ this.server = new openbis(url, dssUrl);
+}
+
+/**
+ * Request the sequencing samples for a project
+ */
+openbis_dsu.prototype.retrieveSequencingSamples = function(action)
+{
+ var sampleCriteria =
+ {
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ attribute : "TYPE",
+ fieldType : "ATTRIBUTE",
+ desiredValue : "ILLUMINA_SEQUENCING"
+ } ],
+ operator : "MATCH_ALL_CLAUSES"
+ };
+
+ this.server.searchForSamples(sampleCriteria, action);
+}
+
+/**
+ * Get the flow lanes for a sequencing sample.
+ */
+openbis_dsu.prototype.retrieveFlowLanesForSequencingSample = function(sample, action)
+{
+ var projectCode = null;
+
+ if(sample.bis.experimentIdentifierOrNull){
+ var experimentIdentifierRegexp = /\/(.*)\/(.*)\/(.*)/g;
+ var experimentIdentifierMatch = experimentIdentifierRegexp.exec(sample.bis.experimentIdentifierOrNull);
+ projectCode = experimentIdentifierMatch[2];
+ }else{
+ action(null);
+ return;
+ }
+
+ var experimentCriteria =
+ {
+ targetEntityKind : "EXPERIMENT",
+ criteria : {
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ "attribute":"PROJECT",
+ "fieldType":"ATTRIBUTE",
+ "desiredValue": projectCode
+ } ]
+ }
+ };
+
+ var parentCriteria =
+ {
+ targetEntityKind : "SAMPLE_PARENT",
+ criteria : {
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ "attribute":"CODE",
+ "fieldType":"ATTRIBUTE",
+ "desiredValue": sample.bis.code
+ } ]
+ }
+ };
+
+ var sampleCriteria =
+ {
+ subCriterias : [ experimentCriteria, parentCriteria ],
+ matchClauses :
+ [ {"@type":"AttributeMatchClause",
+ attribute : "TYPE",
+ fieldType : "ATTRIBUTE",
+ desiredValue : "ILLUMINA_FLOW_LANE"
+ } ],
+ operator : "MATCH_ALL_CLAUSES"
+ };
+
+ this.server.searchForSamples(sampleCriteria, action)
+}
+
+/**
+ * Get all data sets connected to a sequencing sample
+ */
+openbis_dsu.prototype.retrieveDataSetsForSequencingSample = function(sequencing, action)
+{
+ this.server.listDataSetsForSample(sequencing.bis, false, action);
+}
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-login.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-login.js
new file mode 100644
index 00000000000..7d1ece5965c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-login.js
@@ -0,0 +1,77 @@
+/**
+ * A module for configuring the login page to openBIS. It hides and shows
+ * the login form and main content as necessary. It invokes a specified
+ * function on successful login.
+ *
+ * This module assumes that the page follows the structure of our standard
+ * login page. This means that the Following elements are defined :
+ *
+ * div#login-form-div
+ * form#login-form
+ * input#username
+ * input#password
+ * button#login-button
+ * div#main
+ * button#logout-button
+ *
+ * Assuming these elements are defined, this module configures their appeareance
+ * and behavior.The div#main element is initially hidden until the user logs in.
+ * Once logged in, the div#login-form-div element is hidden and the div#main
+ * element is made visible.
+ *
+ * @module openbis-login
+ * @requires jquery
+ */
+
+
+/**
+ * Configure the login page to hide and show the login form and main content
+ * as appropriate
+ *
+ * @param openbis The openbis facade object
+ * @param onLogin The function to be called when login succeeds.
+ * @function
+ */
+
+function openbisLoginPage(openbis, onLogin)
+{
+ this.openbis = openbis;
+ this.onLogin = onLogin;
+}
+
+openbisLoginPage.prototype.configure = function(){
+ var loginPage = this;
+
+ $('#main').hide();
+
+ var username = $("#username").value;
+ if(username == null || username.length==0) {
+ $("#username").focus();
+ } else {
+ $("#login-button").focus();
+ }
+
+ $('#logout-button').click(function() {
+ loginPage.openbis.logout(function(data) {
+ $("#login-form-div").show();
+ $("#main").hide();
+ $("#username").focus();
+ });
+ });
+
+ $('#login-form').submit(function() {
+ loginPage.openbis.login( $.trim($('#username').val()), $.trim($('#password').val()), function(data) { loginPage.onLogin(data) })
+ });
+
+ loginPage.openbis.ifRestoredSessionActive(function(data) { loginPage.onLogin(data) });
+
+ // Make the ENTER key the default button
+ $("login-form input").keypress(function (e) {
+ if ((e.which && e.which == 13) || (e.keyCode && e.keyCode == 13)) {
+ $('button[type=submit].default').click();
+ return false;
+ } else {
+ return true;
+ }
+ });
+}
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-request-cache.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-request-cache.js
new file mode 100644
index 00000000000..29c57a8145e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-request-cache.js
@@ -0,0 +1,51 @@
+/**
+ * Caches openBIS JSON responses into the local browser storage.
+ *
+ * Once the local storage is populated with data from real
+ * server interactions, the UI development can be done offline
+ * based on the cached server responses.
+ *
+ * USAGE : include this script in your app *after* the openbis facade.
+ * Be careful not to distribute it to your customers.
+ *
+ * <script type="text/javascript" src="openbis-request-cache.js"></script>
+ *
+ * To clear the cache, you can call "localStorage.clear()" in a browser console.
+ */
+
+var original_ajax_request_func = _openbisInternal.prototype.ajaxRequest;
+
+_openbisInternal.prototype.ajaxRequest = function(settings) {
+
+ function getCacheId(settings) {
+ var methodName = settings.data['method']
+ if (methodName.toLowerCase().indexOf('authenticate') != -1) {
+ // do not store sensitive parameters information
+ // for login methods (e.g. username/password)
+ return methodName
+ } else {
+ var params = settings.data['params']
+ return methodName + '-' + JSON.stringify(params)
+ }
+ }
+
+ var cacheId = getCacheId(settings)
+ var cachedResponse = localStorage.getItem(cacheId)
+
+ if (cachedResponse == null) {
+ var originalCallback = settings.success
+ settings.success = function(response) {
+ localStorage.setItem(cacheId, JSON.stringify(response))
+ originalCallback(response)
+ }
+ original_ajax_request_func(settings);
+ } else {
+ // async execution after a delay of 100ms
+ setTimeout(function() {
+ settings.success(JSON.parse(cachedResponse))
+ }, 100)
+
+ }
+}
+
+alert("This app includes development code. For production, do not forget to remove the reference to openbis-request-cache.js")
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-screening.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-screening.js
new file mode 100644
index 00000000000..a39730902bb
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis-screening.js
@@ -0,0 +1,655 @@
+/**
+ * =======================================================
+ * OpenBIS screening facade internal code (DO NOT USE!!!)
+ * =======================================================
+ */
+
+if(typeof openbis == 'undefined' || typeof _openbisInternal == 'undefined'){
+ alert('Loading of openbis-screening.js failed - openbis.js is missing');
+}
+
+var _openbisInternalGeneric = _openbisInternal;
+
+var _openbisInternal = function(openbisUrlOrNull){
+ this.init(openbisUrlOrNull);
+}
+
+$.extend(_openbisInternal.prototype, _openbisInternalGeneric.prototype);
+
+_openbisInternal.prototype.init = function(openbisUrlOrNull){
+ _openbisInternalGeneric.prototype.init.call(this, openbisUrlOrNull);
+ this.screeningUrl = this.openbisUrl + "/rmi-screening-api-v1.json"
+}
+
+_openbisInternal.prototype.getScreeningDataStoreApiUrlForDataStoreUrl = function(dataStoreUrl){
+ return dataStoreUrl + "/rmi-datastore-server-screening-api-v1.json"
+}
+
+var _openbisGeneric = openbis;
+
+/**
+ * =========================
+ * OpenBIS screening facade
+ * =========================
+ *
+ * The facade provides access to the following services:
+ *
+ * - all services that the generic OpenBIS facade provides (see openbis.js file)
+ * - ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer
+ * - ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening
+ *
+ */
+
+var openbis = function(openbisUrlOrNull){
+ this._internal = new _openbisInternal(openbisUrlOrNull);
+}
+
+$.extend(openbis.prototype, _openbisGeneric.prototype);
+
+/**
+ * ====================================================================================
+ * ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.IScreeningApiServer methods
+ * ====================================================================================
+ */
+
+/**
+ * @see IScreeningApiServer.listPlates(String)
+ * @method
+ */
+openbis.prototype.listPlates = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlates",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlates(String, ExperimentIdentifier)
+ * @method
+ */
+openbis.prototype.listPlatesForExperiment = function(experimentIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlates",
+ "params" : [ this.getSession(), experimentIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getPlateMetadataList(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.getPlateMetadataList = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getPlateMetadataList",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listExperiments(String)
+ * @method
+ */
+openbis.prototype.listAllExperiments = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listExperiments(String, String)
+ * @method
+ */
+openbis.prototype.listExperimentsVisibleToUser = function(userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession(), userId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listFeatureVectorDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listFeatureVectorDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listFeatureVectorDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listImageDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listImageDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listImageDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listRawImageDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listRawImageDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listRawImageDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listSegmentationImageDatasets(String, List<? extends PlateIdentifier>)
+ * @method
+ */
+openbis.prototype.listSegmentationImageDatasets = function(plateIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listSegmentationImageDatasets",
+ "params" : [ this.getSession(), plateIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getDatasetIdentifiers(String, List<String>)
+ * @method
+ */
+openbis.prototype.getDatasetIdentifiers = function(datasetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getDatasetIdentifiers",
+ "params" : [ this.getSession(), datasetCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateWells(String, ExperimentIdentifier, MaterialIdentifier, boolean)
+ * @method
+ */
+openbis.prototype.listPlateWellsForExperimentAndMaterial = function(experimentIdentifer, materialIdentifier, findDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateWells",
+ "params" : [ this.getSession(), experimentIdentifer, materialIdentifier, findDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateWells(String, MaterialIdentifier, boolean)
+ * @method
+ */
+openbis.prototype.listPlateWellsForMaterial = function(materialIdentifier, findDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateWells",
+ "params" : [ this.getSession(), materialIdentifier, findDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateWells(String, PlateIdentifier)
+ * @method
+ */
+openbis.prototype.listPlateWells = function(plateIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateWells",
+ "params" : [ this.getSession(), plateIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getWellSample(String, WellIdentifier)
+ * @method
+ */
+openbis.prototype.getWellSample = function(wellIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getWellSample",
+ "params" : [ this.getSession(), wellIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getPlateSample(String, PlateIdentifier)
+ * @method
+ */
+openbis.prototype.getPlateSample = function(plateIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getPlateSample",
+ "params" : [ this.getSession(), plateIdentifier ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listPlateMaterialMapping(String, List<PlateIdentifier>, MaterialTypeIdentifier)
+ * @method
+ */
+openbis.prototype.listPlateMaterialMapping = function(plateIdentifiers, materialTypeIdentifierOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listPlateMaterialMapping",
+ "params" : [ this.getSession(), plateIdentifiers, materialTypeIdentifierOrNull ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.getExperimentImageMetadata(String, ExperimentIdentifier)
+ * @method
+ */
+openbis.prototype.getExperimentImageMetadata = function(experimentIdentifer, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "getExperimentImageMetadata",
+ "params" : [ this.getSession(), experimentIdentifer ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listAvailableFeatureCodes(String, List<? extends IFeatureVectorDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listAvailableFeatureCodes = function(featureDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listAvailableFeatureCodes",
+ "params" : [ this.getSession(), featureDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listAvailableFeatures(String, List<? extends IFeatureVectorDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listAvailableFeatures = function(featureDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listAvailableFeatures",
+ "params" : [ this.getSession(), featureDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadFeatures(String, List<FeatureVectorDatasetReference>, List<String>)
+ * @method
+ */
+openbis.prototype.loadFeatures = function(featureDatasets, featureCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadFeatures",
+ "params" : [ this.getSession(), featureDatasets, featureCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadFeaturesForDatasetWellReferences(String, List<FeatureVectorDatasetWellReference>, List<String>)
+ * @method
+ */
+openbis.prototype.loadFeaturesForDatasetWellReferences = function(datasetWellReferences, featureCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadFeaturesForDatasetWellReferences",
+ "params" : [ this.getSession(), datasetWellReferences, featureCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, boolean)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageConversion = function(imageReferences, convertToPng, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "convertToPng" : convertToPng
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadThumbnailImagesBase64(String, List<PlateImageReference>)
+ * @method
+ */
+openbis.prototype.loadThumbnailImagesBase64ForImageReferences = function(imageReferences, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadThumbnailImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, ImageSize)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageSize = function(imageReferences, size, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "size" : size
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferences = function(imageReferences, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, LoadImageConfiguration)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageConfiguration = function(imageReferences, configuration, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "configuration" : configuration
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, ImageRepresentationFormat)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageRepresentationFormat = function(imageReferences, format, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "format" : format
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadImagesBase64(String, List<PlateImageReference>, IImageRepresentationFormatSelectionCriterion...)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForImageReferencesAndImageRepresentationFormatCriteria = function(imageReferences, criteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "imageReferences" : imageReferences,
+ "criteria" : criteria
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listImageMetadata(String, List<? extends IImageDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listImageMetadata = function(imageDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listImageMetadata",
+ "params" : [ this.getSession(), imageDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.listAvailableImageRepresentationFormats(String, List<? extends IDatasetIdentifier>)
+ * @method
+ */
+openbis.prototype.listAvailableImageRepresentationFormats = function(imageDatasets, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "listAvailableImageRepresentationFormats",
+ "params" : [ this.getSession(), imageDatasets ] },
+ success: action
+ });
+}
+
+/**
+ * @see IScreeningApiServer.loadPhysicalThumbnailsBase64(String, List<PlateImageReference>, ImageRepresentationFormat)
+ * @method
+ */
+openbis.prototype.loadPhysicalThumbnailsBase64ForImageReferencesAndImageRepresentationFormat = function(imageReferences, format, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.screeningUrl,
+ data: { "method" : "loadPhysicalThumbnailsBase64",
+ "params" : [ this.getSession(), imageReferences, format ] },
+ success: action
+ });
+}
+
+/**
+ * =====================================================================================
+ * ch.systemsx.cisd.openbis.dss.screening.shared.api.v1.IDssServiceRpcScreening methods
+ * =====================================================================================
+ */
+
+/**
+ * @see IDssServiceRpcScreening.loadImagesBase64(String, IDatasetIdentifier, List<WellPosition>, String, ImageSize)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForDataSetIdentifierAndWellPositionsAndChannelAndImageSize = function(dataSetIdentifier, wellPositions, channel, thumbnailSizeOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "wellPositions" : wellPositions,
+ "channel" : channel,
+ "thumbnailSizeOrNull" : thumbnailSizeOrNull
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.loadImagesBase64(String, IDatasetIdentifier, String, ImageSize)
+ * @method
+ */
+openbis.prototype.loadImagesBase64ForDataSetIdentifierAndChannelAndImageSize = function(dataSetIdentifier, channel, thumbnailSizeOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "loadImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channel" : channel,
+ "thumbnailSizeOrNull" : thumbnailSizeOrNull
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.loadThumbnailImagesBase64(String, IDatasetIdentifier, List<String>)
+ * @method
+ */
+openbis.prototype.loadThumbnailImagesBase64ForDataSetIdentifierAndChannels = function(dataSetIdentifier, channels, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "loadThumbnailImagesBase64",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channels" : channels
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listPlateImageReferences(String, IDatasetIdentifier, List<WellPosition>, String)
+ * @method
+ */
+openbis.prototype.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannel = function(dataSetIdentifier, wellPositions, channel, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listPlateImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "wellPositions" : wellPositions,
+ "channel" : channel
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listPlateImageReferences(String, IDatasetIdentifier, List<WellPosition>, List<String>)
+ * @method
+ */
+openbis.prototype.listPlateImageReferencesForDataSetIdentifierAndWellPositionsAndChannels = function(dataSetIdentifier, wellPositions, channels, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listPlateImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "wellPositions" : wellPositions,
+ "channels" : channels
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listImageReferences(String, IDatasetIdentifier, String)
+ * @method
+ */
+openbis.prototype.listImageReferencesForDataSetIdentifierAndChannel = function(dataSetIdentifier, channel, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channel" : channel
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listImageReferences(String, IDatasetIdentifier, List<String>)
+ * @method
+ */
+openbis.prototype.listImageReferencesForDataSetIdentifierAndChannels = function(dataSetIdentifier, channels, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(dataSetIdentifier.datastoreServerUrl),
+ data: { "method" : "listImageReferences",
+ "params" : {
+ "sessionToken" : this.getSession(),
+ "dataSetIdentifier" : dataSetIdentifier,
+ "channels" : channels
+ }
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IDssServiceRpcScreening.listAvailableFeatureLists(String, IFeatureVectorDatasetIdentifier)
+ * @method
+ */
+openbis.prototype.listAvailableFeatureLists = function(featureVectorDataSet, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(featureVectorDataSet.datastoreServerUrl),
+ data: { "method" : "listAvailableFeatureLists",
+ params : [this.getSession(), featureVectorDataSet]
+ },
+ success: action
+ });
+};
+
+/**
+ * @see IDssServiceRpcScreening.getFeatureList(String, IFeatureVectorDatasetIdentifier, String)
+ * @method
+ */
+openbis.prototype.getFeatureList = function(featureVectorDataSet, featureListCode, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.getScreeningDataStoreApiUrlForDataStoreUrl(featureVectorDataSet.datastoreServerUrl),
+ data: { "method" : "getFeatureList",
+ params : [this.getSession(), featureVectorDataSet, featureListCode]
+ },
+ success: action
+ });
+};
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis.js
new file mode 100644
index 00000000000..f5476a74d56
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/openbis.js
@@ -0,0 +1,1987 @@
+/**
+ * =============================================
+ * OpenBIS facade internal code (DO NOT USE!!!)
+ * =============================================
+ */
+
+if(typeof $ == 'undefined'){
+ alert('Loading of openbis.js failed - jquery.js is missing');
+}
+
+function _openbisInternal(openbisUrlOrNull){
+ this.init(openbisUrlOrNull);
+}
+
+_openbisInternal.prototype.init = function(openbisUrlOrNull){
+ this.openbisUrl = this.normalizeOpenbisUrl(openbisUrlOrNull);
+ this.generalInfoServiceUrl = this.openbisUrl + "/rmi-general-information-v1.json";
+ this.generalInfoChangingServiceUrl = this.openbisUrl + "/rmi-general-information-changing-v1.json";
+ this.queryServiceUrl = this.openbisUrl + "/rmi-query-v1.json";
+ this.webInfoServiceUrl = this.openbisUrl + "/rmi-web-information-v1.json"
+}
+
+_openbisInternal.prototype.log = function(msg){
+ if(console){
+ console.log(msg);
+ }
+}
+
+_openbisInternal.prototype.normalizeOpenbisUrl = function(openbisUrlOrNull){
+ var parts = this.parseUri(window.location);
+
+ if(openbisUrlOrNull){
+ var openbisParts = this.parseUri(openbisUrlOrNull);
+
+ for(openbisPartName in openbisParts){
+ var openbisPartValue = openbisParts[openbisPartName];
+
+ if(openbisPartValue){
+ parts[openbisPartName] = openbisPartValue;
+ }
+ }
+ }
+
+ return parts.protocol + "://" + parts.authority + "/openbis/openbis";
+}
+
+_openbisInternal.prototype.jsonRequestData = function(params) {
+ params["id"] = "1";
+ params["jsonrpc"] = "2.0";
+ return JSON.stringify(params)
+}
+
+_openbisInternal.prototype.ajaxRequest = function(settings) {
+ settings.type = "POST";
+ settings.processData = false;
+ settings.dataType = "json";
+ settings.data = this.jsonRequestData(settings.data);
+ settings.success = this.ajaxRequestSuccess(settings.success);
+ // we call the same settings.success function for backward compatibility
+ settings.error = this.ajaxRequestError(settings.success);
+ $.ajax(settings)
+}
+
+_openbisInternal.prototype.ajaxRequestSuccess = function(action){
+ var openbisObj = this;
+ return function(response){
+ if(response.error){
+ openbisObj.log("Request failed: " + JSON.stringify(response.error));
+ }
+ if(action){
+ action(response);
+ }
+ };
+}
+
+_openbisInternal.prototype.ajaxRequestError = function(action){
+ var openbisObj = this;
+ return function(xhr, status, error){
+ openbisObj.log("Request failed: " + error);
+ if(action){
+ action({
+ "error" : "Request failed: " + error
+ });
+ }
+ };
+}
+
+// Functions for working with cookies (see http://www.quirksmode.org/js/cookies.html)
+
+_openbisInternal.prototype.createCookie = function(name,value,days) {
+ if (days) {
+ var date = new Date();
+ date.setTime(date.getTime()+(days*24*60*60*1000));
+ var expires = "; expires="+date.toGMTString();
+ }
+ else var expires = "";
+ document.cookie = name+"="+value+expires+"; path=/";
+}
+
+_openbisInternal.prototype.readCookie = function(name) {
+ var nameEQ = name + "=";
+ var ca = document.cookie.split(';');
+ for(var i=0;i < ca.length;i++) {
+ var c = ca[i];
+ while (c.charAt(0)==' ') c = c.substring(1,c.length);
+ if (c.indexOf(nameEQ) == 0) return c.substring(nameEQ.length,c.length);
+ }
+ return null;
+}
+
+_openbisInternal.prototype.eraseCookie = function(name) {
+ this.createCookie(name,"",-1);
+}
+
+// parseUri 1.2.2 (c) Steven Levithan <stevenlevithan.com> MIT License (see http://blog.stevenlevithan.com/archives/parseuri)
+
+_openbisInternal.prototype.parseUri = function(str) {
+ var options = {
+ strictMode: false,
+ key: ["source","protocol","authority","userInfo","user","password","host","port","relative","path","directory","file","query","anchor"],
+ q: {
+ name: "queryKey",
+ parser: /(?:^|&)([^&=]*)=?([^&]*)/g
+ },
+ parser: {
+ strict: /^(?:([^:\/?#]+):)?(?:\/\/((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?))?((((?:[^?#\/]*\/)*)([^?#]*))(?:\?([^#]*))?(?:#(.*))?)/,
+ loose: /^(?:(?![^:@]+:[^:@\/]*@)([^:\/?#.]+):)?(?:\/\/)?((?:(([^:@]*)(?::([^:@]*))?)?@)?([^:\/?#]*)(?::(\d*))?)(((\/(?:[^?#](?![^?#\/]*\.[^?#\/.]+(?:[?#]|$)))*\/?)?([^?#\/]*))(?:\?([^#]*))?(?:#(.*))?)/
+ }
+ };
+
+ var o = options,
+ m = o.parser[o.strictMode ? "strict" : "loose"].exec(str),
+ uri = {},
+ i = 14;
+
+ while (i--) uri[o.key[i]] = m[i] || "";
+
+ uri[o.q.name] = {};
+ uri[o.key[12]].replace(o.q.parser, function ($0, $1, $2) {
+ if ($1) uri[o.q.name][$1] = $2;
+ });
+
+ return uri;
+}
+
+_openbisInternal.prototype.listDataStores = function(action){
+ this.ajaxRequest({
+ url: this.generalInfoServiceUrl,
+ data: { "method" : "listDataStores",
+ "params" : [ this.sessionToken ]
+ },
+ success: action
+ });
+}
+
+_openbisInternal.prototype.initDataStores = function(action){
+ var openbisInternal = this;
+
+ if(typeof this.dataStores === "undefined"){
+ this.listDataStores(function(response){
+ if(response.result){
+ openbisInternal.dataStores = response.result;
+ }else{
+ openbisInternal.dataStores = [];
+ }
+ action();
+ });
+ }else{
+ action();
+ }
+}
+
+_openbisInternal.prototype.getDataStoreUrlForDataStoreCode = function(dataStoreCodeOrNull, action) {
+ var openbisInternal = this;
+
+ this.initDataStores(function(){
+ if(openbisInternal.dataStores.length == 0){
+ throw "Couldn't get a data store url as there are no data stores configured.";
+ }else{
+ if(dataStoreCodeOrNull){
+ var dataStoreUrl = null;
+ $.each(openbisInternal.dataStores, function(index, dataStore){
+ if(dataStore.code == dataStoreCodeOrNull){
+ dataStoreUrl = dataStore.downloadUrl;
+ }
+ });
+ if(dataStoreUrl){
+ action(dataStoreUrl);
+ }else{
+ throw "Couldn't get a data store url because data store with " + dataStoreCodeOrNull + " code does not exist.";
+ }
+ }else{
+ if(openbisInternal.dataStores.length == 1){
+ action(openbisInternal.dataStores[0].downloadUrl);
+ }else{
+ throw "There is more than one data store configured. Please specify a data store code to get a data store url.";
+ }
+ }
+ }
+ });
+}
+
+_openbisInternal.prototype.getDataStoreUrlForDataSetCode = function(dataSetCode, action) {
+ var openbisInternal = this;
+
+ this.initDataStores(function(){
+ if(openbisInternal.dataStores.length == 0){
+ throw "Couldn't get a data store url as there are no data stores configured.";
+ }else if(openbisInternal.dataStores.length == 1){
+ action(openbisInternal.dataStores[0].downloadUrl);
+ }else{
+ openbisInternal.ajaxRequest({
+ url: openbisInternal.generalInfoServiceUrl,
+ data: { "method" : "tryGetDataStoreBaseURL",
+ "params" : [ openbisInternal.sessionToken, dataSetCode ]
+ },
+ success: function(response){
+ var hostUrl = response.result;
+
+ if(hostUrl){
+ action(hostUrl + "/datastore_server");
+ }else{
+ throw "Couldn't get a data store url for a data set with " + dataSetCode + " code because the data set does not exist.";
+ }
+ }
+ });
+ }
+ });
+}
+
+_openbisInternal.prototype.getDataStoreApiUrlForDataStoreCode = function(dataStoreCodeOrNull, action) {
+ this.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ action(dataStoreUrl + "/rmi-dss-api-v1.json");
+ });
+}
+
+_openbisInternal.prototype.getDataStoreApiUrlForDataSetCode = function(dataSetCode, action) {
+ this.getDataStoreUrlForDataSetCode(dataSetCode, function(dataStoreUrl){
+ action(dataStoreUrl + "/rmi-dss-api-v1.json");
+ });
+}
+
+_openbisInternal.prototype.getDataStoreHostForDataStoreCode = function(dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ var parts = openbisObj.parseUri(dataStoreUrl);
+ action(parts.protocol + "://" + parts.authority);
+ });
+}
+
+/**
+ * ===============
+ * OpenBIS facade
+ * ===============
+ *
+ * The facade provides access to the following services:
+ *
+ * - ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService
+ * - ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService
+ * - ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer
+ * - ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService
+ * - ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric
+ *
+ * @class
+ *
+ */
+
+function openbis(openbisUrlOrNull) {
+ this._internal = new _openbisInternal(openbisUrlOrNull);
+}
+
+/**
+ * ==================================================================================
+ * ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService methods
+ * ==================================================================================
+ */
+
+/**
+ * Log into openBIS.
+ *
+ * @see IGeneralInformationService.tryToAuthenticateForAllServices(String, String)
+ * @method
+ */
+openbis.prototype.login = function(userId, userPassword, action) {
+ var openbisObj = this
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "tryToAuthenticateForAllServices",
+ "params" : [ userId, userPassword ]
+ },
+ success:
+ function(loginResponse) {
+ if(loginResponse.error){
+ alert("Login failed");
+ }else{
+ openbisObj._internal.sessionToken = loginResponse.result;
+ openbisObj.rememberSession();
+ }
+ openbisObj._internal.initDataStores(function(){
+ action(loginResponse);
+ });
+ }
+ });
+}
+
+/**
+ * Stores the current session in a cookie.
+ *
+ * @method
+ */
+openbis.prototype.rememberSession = function() {
+ this._internal.createCookie('openbis', this.getSession(), 1);
+}
+
+/**
+ * Removes the current session from a cookie.
+ *
+ * @method
+ */
+openbis.prototype.forgetSession = function() {
+ this._internal.eraseCookie('openbis');
+}
+
+/**
+ * Restores the current session from a cookie.
+ *
+ * @method
+ */
+openbis.prototype.restoreSession = function() {
+ this._internal.sessionToken = this._internal.readCookie('openbis');
+}
+
+/**
+ * Sets the current session.
+ *
+ * @method
+ */
+openbis.prototype.useSession = function(sessionToken){
+ this._internal.sessionToken = sessionToken;
+}
+
+/**
+ * Returns the current session.
+ *
+ * @method
+ */
+openbis.prototype.getSession = function(){
+ return this._internal.sessionToken;
+}
+
+/**
+ * Checks whether the current session is still active.
+ *
+ * @see IGeneralInformationService.isSessionActive(String)
+ * @method
+ */
+openbis.prototype.isSessionActive = function(action) {
+ if(this.getSession()){
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "isSessionActive",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+ }else{
+ action({ result : false })
+ }
+}
+
+/**
+ * Restores the current session from a cookie and executes
+ * the specified action if the session is still active.
+ *
+ * @see restoreSession()
+ * @see isSessionActive()
+ * @method
+ */
+openbis.prototype.ifRestoredSessionActive = function(action) {
+ this.restoreSession();
+ this.isSessionActive(function(data) { if (data.result) action(data) });
+}
+
+/**
+ * Log out of openBIS.
+ *
+ * @see IGeneralInformationService.logout(String)
+ * @method
+ */
+openbis.prototype.logout = function(action) {
+ this.forgetSession();
+
+ if(this.getSession()){
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "logout",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+ }else if(action){
+ action({ result : null });
+ }
+}
+
+/**
+ * @see IGeneralInformationService.listNamedRoleSets(String)
+ * @method
+ */
+openbis.prototype.listNamedRoleSets = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listNamedRoleSets",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSpacesWithProjectsAndRoleAssignments(String, String)
+ * @method
+ */
+openbis.prototype.listSpacesWithProjectsAndRoleAssignments = function(databaseInstanceCodeOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSpacesWithProjectsAndRoleAssignments",
+ "params" : [ this.getSession(), databaseInstanceCodeOrNull ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForSamples(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForSamples = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForSamples",
+ "params" : [ this.getSession(),
+ searchCriteria ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForSamples(String, SearchCriteria, EnumSet<SampleFetchOption>)
+ * @method
+ */
+openbis.prototype.searchForSamplesWithFetchOptions = function(searchCriteria, fetchOptions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: {
+ "method" : "searchForSamples",
+ "params" : [
+ this.getSession(),
+ searchCriteria,
+ fetchOptions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForSamplesOnBehalfOfUser(String, SearchCriteria, EnumSet<SampleFetchOption>, String)
+ * @method
+ */
+openbis.prototype.searchForSamplesOnBehalfOfUser = function(searchCriteria, fetchOptions, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: {
+ "method" : "searchForSamplesOnBehalfOfUser",
+ "params" : [
+ this.getSession(),
+ searchCriteria,
+ fetchOptions,
+ userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.filterSamplesVisibleToUser(String, List<Sample>, String)
+ * @method
+ */
+openbis.prototype.filterSamplesVisibleToUser = function(allSamples, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: {
+ "method" : "filterSamplesVisibleToUser",
+ "params" : [
+ this.getSession(),
+ allSamples,
+ userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSamplesForExperiment(String, String)
+ * @method
+ */
+openbis.prototype.listSamplesForExperiment = function(experimentIdentifier, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSamplesForExperiment",
+ "params" : [ this.getSession(), experimentIdentifier ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSamplesForExperimentOnBehalfOfUser(String, String, String)
+ * @method
+ */
+openbis.prototype.listSamplesForExperimentOnBehalfOfUser = function(experimentIdentifier, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSamplesForExperimentOnBehalfOfUser",
+ "params" : [ this.getSession(), experimentIdentifier, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSets(String, List<Sample>)
+ * @method
+ */
+openbis.prototype.listDataSetsForSamples = function(samples, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSets",
+ "params" : [ this.getSession(), samples ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperiments(String, List<Project>, String)
+ * @method
+ */
+openbis.prototype.listExperiments = function(projects, experimentType, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession(), projects, experimentType ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperimentsHavingSamples(String, List<Project>, String)
+ * @method
+ */
+openbis.prototype.listExperimentsHavingSamples = function(projects, experimentType, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperimentsHavingSamples",
+ "params" : [ this.getSession(), projects, experimentType ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperimentsHavingDataSets(String, List<Project>, String)
+ * @method
+ */
+openbis.prototype.listExperimentsHavingDataSets = function(projects, experimentType, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperimentsHavingDataSets",
+ "params" : [ this.getSession(), projects, experimentType ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.filterExperimentsVisibleToUser(String, List<Experiment>, String)
+ * @method
+ */
+openbis.prototype.filterExperimentsVisibleToUser = function(allExperiments, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "filterExperimentsVisibleToUser",
+ "params" : [ this.getSession(), allExperiments, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsForSample(String, Sample, boolean)
+ * @method
+ */
+openbis.prototype.listDataSetsForSample = function(sample, restrictToDirectlyConnected, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsForSample",
+ "params" : [ this.getSession(), sample, restrictToDirectlyConnected ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataStores(String)
+ * @method
+ */
+openbis.prototype.listDataStores = function(action) {
+ this._internal.listDataStores(action);
+}
+
+/**
+ * @see IGeneralInformationService.getDefaultPutDataStoreBaseURL(String)
+ * @method
+ */
+openbis.prototype.getDefaultPutDataStoreBaseURL = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDefaultPutDataStoreBaseURL",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.tryGetDataStoreBaseURL(String)
+ * @method
+ */
+openbis.prototype.tryGetDataStoreBaseURL = function(dataSetCode, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "tryGetDataStoreBaseURL",
+ "params" : [ this.getSession(), dataSetCode ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getDataStoreBaseURLs(String, List<String>)
+ * @method
+ */
+openbis.prototype.getDataStoreBaseURLs = function(dataSetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDataStoreBaseURLs",
+ "params" : [ this.getSession(), dataSetCodes ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetTypes(String)
+ * @method
+ */
+openbis.prototype.listDataSetTypes = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetTypes",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listSampleTypes(String)
+ * @method
+ */
+openbis.prototype.listSampleTypes = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listSampleTypes",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperimentTypes(String)
+ * @method
+ */
+openbis.prototype.listExperimentTypes = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperimentTypes",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listVocabularies(String)
+ * @method
+ */
+openbis.prototype.listVocabularies = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listVocabularies",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSets(String, List<Sample>, EnumSet<Connections>)
+ * @method
+ */
+openbis.prototype.listDataSetsForSamplesWithConnections = function(samples, connectionsToGet, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSets",
+ "params" : [ this.getSession(), samples, connectionsToGet ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsOnBehalfOfUser(String, List<Sample>, EnumSet<Connections>, String)
+ * @method
+ */
+openbis.prototype.listDataSetsForSamplesOnBehalfOfUser = function(samples, connectionsToGet, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsOnBehalfOfUser",
+ "params" : [ this.getSession(), samples, connectionsToGet, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsForExperiments(String, List<Experiment>, EnumSet<Connections>)
+ * @method
+ */
+openbis.prototype.listDataSetsForExperiments = function(experiments, connectionsToGet, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsForExperiments",
+ "params" : [ this.getSession(), experiments, connectionsToGet ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listDataSetsForExperimentsOnBehalfOfUser(String, List<Experiment>, EnumSet<Connections>, String)
+ * @method
+ */
+openbis.prototype.listDataSetsForExperimentsOnBehalfOfUser = function(experiments, connectionsToGet, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listDataSetsForExperimentsOnBehalfOfUser",
+ "params" : [ this.getSession(), experiments, connectionsToGet, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getDataSetMetaData(String, List<String>)
+ * @method
+ */
+openbis.prototype.getDataSetMetaData = function(dataSetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDataSetMetaData",
+ "params" : [ this.getSession(), dataSetCodes ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getDataSetMetaData(String, List<String>, EnumSet<DataSetFetchOption>)
+ * @method
+ */
+openbis.prototype.getDataSetMetaDataWithFetchOptions = function(dataSetCodes, fetchOptions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getDataSetMetaData",
+ "params" : [ this.getSession(), dataSetCodes, fetchOptions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForDataSets(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForDataSets = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForDataSets",
+ "params" : [ this.getSession(),
+ searchCriteria ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForDataSetsOnBehalfOfUser(String, SearchCriteria, String)
+ * @method
+ */
+openbis.prototype.searchForDataSetsOnBehalfOfUser = function(searchCriteria, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForDataSetsOnBehalfOfUser",
+ "params" : [ this.getSession(),
+ searchCriteria,
+ userId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.filterDataSetsVisibleToUser(String, List<DataSet>, String)
+ * @method
+ */
+openbis.prototype.filterDataSetsVisibleToUser = function(allDataSets, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "filterDataSetsVisibleToUser",
+ "params" : [ this.getSession(),
+ allDataSets,
+ userId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listExperiments(String, List<String>)
+ * @method
+ */
+openbis.prototype.listExperimentsForIdentifiers = function(experimentIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listExperiments",
+ "params" : [ this.getSession(),
+ experimentIdentifiers ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForExperiments(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForExperiments = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForExperiments",
+ "params" : [ this.getSession(),
+ searchCriteria ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listProjects(String)
+ * @method
+ */
+openbis.prototype.listProjects = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listProjects",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listProjectsOnBehalfOfUser(String, String)
+ * @method
+ */
+openbis.prototype.listProjectsOnBehalfOfUser = function(userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listProjectsOnBehalfOfUser",
+ "params" : [ this.getSession(), userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getMaterialByCodes(String, List<MaterialIdentifier>)
+ * @method
+ */
+openbis.prototype.getMaterialByCodes = function(materialIdentifiers, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getMaterialByCodes",
+ "params" : [ this.getSession(), materialIdentifiers ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.searchForMaterials(String, SearchCriteria)
+ * @method
+ */
+openbis.prototype.searchForMaterials = function(searchCriteria, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "searchForMaterials",
+ "params" : [ this.getSession(), searchCriteria ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listMetaprojects(String)
+ * @method
+ */
+openbis.prototype.listMetaprojects = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listMetaprojects",
+ "params" : [ this.getSession() ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listMetaprojectsOnBehalfOfUser(String, String)
+ * @method
+ */
+openbis.prototype.listMetaprojectsOnBehalfOfUser = function(userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listMetaprojectsOnBehalfOfUser",
+ "params" : [ this.getSession(), userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getMetaproject(String, IMetaprojectId)
+ * @method
+ */
+openbis.prototype.getMetaproject = function(metaprojectId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getMetaproject",
+ "params" : [ this.getSession(), metaprojectId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.getMetaprojectOnBehalfOfUser(String, IMetaprojectId, String)
+ * @method
+ */
+openbis.prototype.getMetaprojectOnBehalfOfUser = function(metaprojectId, userId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "getMetaprojectOnBehalfOfUser",
+ "params" : [ this.getSession(), metaprojectId, userId ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listAttachmentsForProject(String, IProjectId, boolean)
+ * @method
+ */
+openbis.prototype.listAttachmentsForProject = function(projectId, allVersions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listAttachmentsForProject",
+ "params" : [ this.getSession(), projectId, allVersions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listAttachmentsForExperiment(String, IExperimentId, boolean)
+ * @method
+ */
+openbis.prototype.listAttachmentsForExperiment = function(experimentId, allVersions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listAttachmentsForExperiment",
+ "params" : [ this.getSession(), experimentId, allVersions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationService.listAttachmentsForSample(String, ISampleId, boolean)
+ * @method
+ */
+openbis.prototype.listAttachmentsForSample = function(sampleId, allVersions, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoServiceUrl,
+ data: { "method" : "listAttachmentsForSample",
+ "params" : [ this.getSession(), sampleId, allVersions ]
+ },
+ success: action
+ });
+}
+
+/**
+ * ==========================================================================================
+ * ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationChangingService methods
+ * ==========================================================================================
+ */
+
+/**
+ * @see IGeneralInformationChangingService.updateSampleProperties(String, long, Map<String,String>)
+ * @method
+ */
+openbis.prototype.updateSampleProperties = function(sampleId, properties, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "updateSampleProperties",
+ "params" : [ this.getSession(), sampleId, properties ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.addUnofficialVocabularyTerm(String, Long, NewVocabularyTerm)
+ * @method
+ */
+openbis.prototype.addUnofficialVocabularyTerm = function(vocabularyId, term, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "addUnofficialVocabularyTerm",
+ "params" : [ this.getSession(), vocabularyId, term ]
+ },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.getWebAppSettings(String, String)
+ * @method
+ */
+openbis.prototype.getWebAppSettings = function(webappId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "getWebAppSettings",
+ params : [ this.getSession(), webappId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.setWebAppSettings(String, WebAppSettings)
+ * @method
+ */
+openbis.prototype.setWebAppSettings = function(webappSettings, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "setWebAppSettings",
+ params : [ this.getSession(), webappSettings ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.createMetaproject(String, String, String)
+ * @method
+ */
+openbis.prototype.createMetaproject = function(name, descriptionOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "createMetaproject",
+ params : [ this.getSession(), name, descriptionOrNull ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.updateMetaproject(String, IMetaprojectId, String, String)
+ * @method
+ */
+openbis.prototype.updateMetaproject = function(metaprojectId, name, descriptionOrNull, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "updateMetaproject",
+ params : [ this.getSession(), metaprojectId, name, descriptionOrNull ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.deleteMetaproject(String, IMetaprojectId)
+ * @method
+ */
+openbis.prototype.deleteMetaproject = function(metaprojectId, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "deleteMetaproject",
+ params : [ this.getSession(), metaprojectId ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.addToMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds)
+ * @method
+ */
+openbis.prototype.addToMetaproject = function(metaprojectId, assignmentsToAdd, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "addToMetaproject",
+ params : [ this.getSession(), metaprojectId, assignmentsToAdd ] },
+ success: action
+ });
+}
+
+/**
+ * @see IGeneralInformationChangingService.removeFromMetaproject(String, IMetaprojectId, MetaprojectAssignmentsIds)
+ * @method
+ */
+openbis.prototype.removeFromMetaproject = function(metaprojectId, assignmentsToRemove, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.generalInfoChangingServiceUrl,
+ data: { "method" : "removeFromMetaproject",
+ params : [ this.getSession(), metaprojectId, assignmentsToRemove ] },
+ success: action
+ });
+}
+
+/**
+ * ============================================================================
+ * ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer methods
+ * ============================================================================
+ */
+
+/**
+ * @see IQueryApiServer.listQueries(String)
+ * @method
+ */
+openbis.prototype.listQueries = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "listQueries",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.executeQuery(String, long, Map<String, String>)
+ * @method
+ */
+openbis.prototype.executeQuery = function(queryId, parameterBindings, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "executeQuery",
+ "params" : [ this.getSession(), queryId, parameterBindings ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.listTableReportDescriptions(String)
+ * @method
+ */
+openbis.prototype.listTableReportDescriptions = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "listTableReportDescriptions",
+ "params" : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.createReportFromDataSets(String, String, String, List<String>)
+ * @method
+ */
+openbis.prototype.createReportFromDataSets = function(dataStoreCode, serviceKey, dataSetCodes, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "createReportFromDataSets",
+ params : [ this.getSession(), dataStoreCode, serviceKey, dataSetCodes ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.listAggregationServices(String)
+ * @method
+ */
+openbis.prototype.listAggregationServices = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "listAggregationServices",
+ params : [ this.getSession() ] },
+ success: action
+ });
+}
+
+/**
+ * @see IQueryApiServer.createReportFromAggregationService(String, String, String, Map<String, Object>)
+ * @method
+ */
+openbis.prototype.createReportFromAggregationService = function(dataStoreCode, serviceKey, parameters, action) {
+ this._internal.ajaxRequest({
+ url: this._internal.queryServiceUrl,
+ data: { "method" : "createReportFromAggregationService",
+ params : [ this.getSession(), dataStoreCode, serviceKey, parameters ] },
+ success: action
+ });
+}
+
+
+/**
+ * ==============================================================================
+ * ch.systemsx.cisd.openbis.generic.shared.api.v1.IWebInformationService methods
+ * ==============================================================================
+ */
+
+/**
+ * Returns the current server side session.
+ *
+ * @see IWebInformationService.getSessionToken()
+ * @method
+ */
+openbis.prototype.getSessionTokenFromServer = function(action) {
+ this._internal.ajaxRequest({
+ url: this._internal.webInfoServiceUrl,
+ data: { "method" : "getSessionToken" },
+ success: action
+ });
+}
+
+/**
+ * =================================================================================
+ * ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric methods
+ * =================================================================================
+ */
+
+/**
+ * @see IDssServiceRpcGeneric.listFilesForDataSet(String, DataSetFileDTO)
+ * @method
+ */
+openbis.prototype.listFilesForDataSetFile = function(fileOrFolder, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(fileOrFolder.dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "listFilesForDataSet",
+ "params" : [ openbisObj.getSession(), fileOrFolder ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSet(String, DataSetFileDTO)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetFile = function(fileOrFolder, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(fileOrFolder.dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSet",
+ "params" : [ openbisObj.getSession(), fileOrFolder ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Returns a download url that is valid as long as the user session is valid.
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetFileInSession = function(fileOrFolder, action) {
+ this.getDownloadUrlForFileForDataSetInSession(fileOrFolder.dataSetCode, fileOrFolder.path, action);
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSetWithTimeout(String, DataSetFileDTO, long)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetFileWithTimeout = function(fileOrFolder, validityDurationInSeconds, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(fileOrFolder.dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSetWithTimeout",
+ "params" : [ openbisObj.getSession(), fileOrFolder, validityDurationInSeconds ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.listFilesForDataSet(String, String, String, boolean)
+ * @method
+ */
+openbis.prototype.listFilesForDataSet = function(dataSetCode, path, recursive, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "listFilesForDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, path, recursive ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSet = function(dataSetCode, path, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, path ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Returns a download url that is valid as long as the user session is valid.
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetInSession = function(dataSetCode, path, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreUrlForDataSetCode(dataSetCode, function(dataStoreUrl){
+ var pathWithoutSlash = path.charAt(0) == "/" ? path.substr(1) : path;
+ var url = dataStoreUrl + "/" + dataSetCode + "/" + pathWithoutSlash + "?sessionID=" + openbisObj.getSession();
+ action(url);
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getDownloadUrlForFileForDataSetWithTimeout(String, String, String, long)
+ * @method
+ */
+openbis.prototype.getDownloadUrlForFileForDataSetWithTimeout = function(dataSetCode, path, validityDurationInSeconds, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getDownloadUrlForFileForDataSetWithTimeout",
+ "params" : [ openbisObj.getSession(), dataSetCode, path, validityDurationInSeconds ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Creates a session workspace file uploader inside the specified uploaderContainer element and for the default data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceUploader = function(uploaderContainer, oncomplete){
+ this.createSessionWorkspaceUploaderForDataStore(uploaderContainer, null, oncomplete);
+}
+
+/**
+ * Creates a session workspace file uploader inside the specified uploaderContainer element and for the specified data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceUploaderForDataStore = function(uploaderContainer, dataStoreCodeOrNull, oncomplete){
+ var uploaderSupported = window.File && window.FileReader && window.XMLHttpRequest;
+
+ if(!uploaderSupported){
+ alert("Uploader is not supported by your browser.");
+ return;
+ }
+
+ var $this = this;
+ this._internal.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ // figure out what is the location of the openbis.js script and assume that uploader resources are served by the same server
+ var openbisScriptLocation = $('script[src*=openbis\\.js]').attr('src');
+ var uploaderDirectoryLocation = jsFileLocation = openbisScriptLocation.replace(/js\/openbis\.js/g, 'uploader');
+
+ $('head').append('<link rel="stylesheet" media="screen" type="text/css" href="' + uploaderDirectoryLocation + '/css/src/upload.css" />');
+ $('head').append('<script charset="utf-8" type="text/javascript" src="' + uploaderDirectoryLocation + '/js/src/upload.js" />');
+
+ $(uploaderContainer).load(uploaderDirectoryLocation + "/index.html", function(){
+ Uploader.init({
+ smart_mode: true,
+ chunk_size: 1000*1024,
+ file_upload_url: dataStoreUrl + "/session_workspace_file_upload",
+ form_upload_url: dataStoreUrl + "/session_workspace_form_upload",
+ file_download_url: dataStoreUrl + "/session_workspace_file_download",
+ oncomplete: oncomplete,
+ sessionID: $this.getSession()
+ });
+ });
+ });
+}
+
+/**
+ * Creates a session workspace download url for a file with the specified filePath and for the default data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadUrl = function(filePath, action){
+ return this.createSessionWorkspaceDownloadUrlForDataStore(filePath, null, action);
+}
+
+/**
+ * Creates a session workspace download url for a file with the specified filePath and for the specified data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadUrlForDataStore = function(filePath, dataStoreCodeOrNull, action){
+ var openbisObj = this;
+
+ this._internal.getDataStoreUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreUrl){
+ var downloadUrl = dataStoreUrl + "/session_workspace_file_download?sessionID=" + openbisObj.getSession() + "&filePath=" + filePath;
+ action(downloadUrl);
+ });
+}
+
+/**
+ * Create a session workspace download link for a file with the specified filePath at the default data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadLink = function(filePath, linkText, action){
+ return this.createSessionWorkspaceDownloadLinkForDataStore(filePath, linkText, null, action);
+}
+
+/**
+ * Create a session workspace download link for a file with the specified filePath at the specified data store.
+ * @method
+ */
+openbis.prototype.createSessionWorkspaceDownloadLinkForDataStore = function(filePath, linkText, dataStoreCodeOrNull, action){
+ this.createSessionWorkspaceDownloadUrlForDataStore(filePath, dataStoreCodeOrNull, function(downloadUrl){
+ var link = $("<a href='" + downloadUrl + "'>" + (linkText ? linkText : filePath) + "</a>");
+ action(link);
+ });
+}
+
+/**
+ * Downloads a session workspace file with the specified filePath from the default data store.
+ * @method
+ */
+openbis.prototype.downloadSessionWorkspaceFile = function(filePath, action) {
+ this.downloadSessionWorkspaceFileForDataStore(filePath, null, action);
+}
+
+/**
+ * Downloads a session workspace file with the specified filePath from the specified data store.
+ * @method
+ */
+openbis.prototype.downloadSessionWorkspaceFileForDataStore = function(filePath, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this.createSessionWorkspaceDownloadUrlForDataStore(filePath, dataStoreCodeOrNull, function(downloadUrl){
+ $.ajax({
+ type: "GET",
+ dataType: "text",
+ url: downloadUrl,
+ success: openbisObj._internal.ajaxRequestSuccess(action),
+ error: openbisObj._internal.ajaxRequestError(action)
+ });
+ });
+}
+
+/**
+ * Deletes a session workspace file with the specified filePath from the default data store.
+ * @method
+ */
+openbis.prototype.deleteSessionWorkspaceFile = function(filePath, action) {
+ this.deleteSessionWorkspaceFileForDataStore(filePath, null, action)
+}
+
+/**
+ * Deletes a session workspace file with the specified filePath from the specified data store.
+ * @method
+ */
+openbis.prototype.deleteSessionWorkspaceFileForDataStore = function(filePath, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreApiUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: {
+ "method" : "deleteSessionWorkspaceFile",
+ "params" : [ openbisObj.getSession(), filePath ]
+ },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.getPathToDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.getPathToDataSet = function(dataSetCode, overrideStoreRootPathOrNull, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "getPathToDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, overrideStoreRootPathOrNull ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.tryGetPathToDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.tryGetPathToDataSet = function(dataSetCode, overrideStoreRootPathOrNull, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "tryGetPathToDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, overrideStoreRootPathOrNull ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * List shares from the default data store.
+ *
+ * @see IDssServiceRpcGeneric.listAllShares(String)
+ * @method
+ */
+openbis.prototype.listAllShares = function(action) {
+ this.listAllSharesForDataStore(null, action);
+}
+
+/**
+ * List shares from the specified data store.
+ *
+ * @see IDssServiceRpcGeneric.listAllShares(String)
+ * @method
+ */
+openbis.prototype.listAllSharesForDataStore = function(dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreApiUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: {
+ "method" : "listAllShares",
+ "params" : [ openbisObj.getSession() ]
+ },
+ success: action
+ });
+ });
+}
+
+/**
+ * @see IDssServiceRpcGeneric.shuffleDataSet(String, String, String)
+ * @method
+ */
+openbis.prototype.shuffleDataSet = function(dataSetCode, shareId, action) {
+ var openbisObj = this;
+ this._internal.getDataStoreApiUrlForDataSetCode(dataSetCode, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: { "method" : "shuffleDataSet",
+ "params" : [ openbisObj.getSession(), dataSetCode, shareId ] },
+ success: action
+ });
+ });
+}
+
+/**
+ * Get a validation script from the default data store.
+ *
+ * @see IDssServiceRpcGeneric.getValidationScript(String, String)
+ * @method
+ */
+openbis.prototype.getValidationScript = function(dataSetTypeOrNull, action) {
+ this.getValidationScriptForDataStore(dataSetTypeOrNull, null, action);
+}
+
+/**
+ * Get a validation script from the specified data store.
+ *
+ * @see IDssServiceRpcGeneric.getValidationScript(String, String)
+ * @method
+ */
+openbis.prototype.getValidationScriptForDataStore = function(dataSetTypeOrNull, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreApiUrlForDataStoreCode(dataStoreCodeOrNull, function(dataStoreApiUrl){
+ openbisObj._internal.ajaxRequest({
+ url: dataStoreApiUrl,
+ data: {
+ "method" : "getValidationScript",
+ "params" : [ openbisObj.getSession(), dataSetTypeOrNull ]
+ },
+ success: action
+ });
+ });
+}
+
+/**
+ * Get a url that will produce a graph with the given configuration at the default data store.
+ *
+ * @method
+ */
+openbis.prototype.getGraphUrl = function(graphConfig, action) {
+ this.getGraphUrlForDataStore(graphConfig, null, action);
+}
+
+/**
+ * Get a url that will produce a graph with the given configuration at the specified data store.
+ *
+ * @method
+ */
+openbis.prototype.getGraphUrlForDataStore = function(graphConfig, dataStoreCodeOrNull, action) {
+ var openbisObj = this;
+
+ this._internal.getDataStoreHostForDataStoreCode(dataStoreCodeOrNull, function(dataStoreHost) {
+ var graphUrl = dataStoreHost + "/graphservice/?sessionID=" + openbisObj.getSession();
+ for (prop in graphConfig) {
+ graphUrl += "&" + prop + "=" + encodeURIComponent(graphConfig[prop]);
+ }
+ action(graphUrl);
+ });
+}
+
+/**
+ * =====================
+ * OpenBIS graph config
+ * =====================
+ *
+ * Defines the configuration for a graph generated by the server's graphservice.
+ *
+ * To use, set properties on the object with keys that match the name of the servlet
+ * parameters of the graphservice and then call the method getGraphUrl on the openbis
+ * object. Do *not* set the sessionID paramter -- this will be filled in by the openbis
+ * object.
+ *
+ * The graphservice is documented here: https://wiki-bsse.ethz.ch/display/openBISDoc/Configuring+Graphs+and+Plots
+ *
+ * @class
+ *
+ */
+function openbisGraphConfig(filename, graphtype, title) {
+ this.file = filename;
+ this["graph-type"] = graphtype;
+ this.title = title;
+}
+
+
+/**
+ * =====================================================
+ * OpenBIS webapp context internal code (DO NOT USE!!!)
+ * =====================================================
+ */
+
+function _openbisWebAppContextInternal(){
+ this.webappCode = this.getParameter("webapp-code");
+ this.sessionId = this.getParameter("session-id");
+ this.entityKind = this.getParameter("entity-kind");
+ this.entityType = this.getParameter("entity-type");
+ this.entityIdentifier = this.getParameter("entity-identifier");
+ this.entityPermId = this.getParameter("entity-perm-id");
+}
+
+_openbisWebAppContextInternal.prototype.getParameter = function(parameterName){
+ var match = location.search.match(RegExp("[?|&]"+parameterName+'=(.+?)(&|$)'));
+ if(match && match[1]){
+ return decodeURIComponent(match[1].replace(/\+/g,' '));
+ }else{
+ return null;
+ }
+}
+
+/**
+ * =======================
+ * OpenBIS webapp context
+ * =======================
+ *
+ * Provides a context information for webapps that are embedded inside the OpenBIS UI.
+ *
+ * @class
+ *
+ */
+function openbisWebAppContext(){
+ this._internal = new _openbisWebAppContextInternal();
+}
+
+openbisWebAppContext.prototype.getWebappCode = function(){
+ return this._internal.webappCode;
+}
+
+openbisWebAppContext.prototype.getSessionId = function(){
+ return this._internal.sessionId;
+}
+
+openbisWebAppContext.prototype.getEntityKind = function(){
+ return this._internal.entityKind;
+}
+
+openbisWebAppContext.prototype.getEntityType = function(){
+ return this._internal.entityType;
+}
+
+openbisWebAppContext.prototype.getEntityIdentifier = function(){
+ return this._internal.entityIdentifier;
+}
+
+openbisWebAppContext.prototype.getEntityPermId = function(){
+ return this._internal.entityPermId;
+}
+
+openbisWebAppContext.prototype.getParameter = function(parameterName){
+ return this._internal.getParameter(parameterName);
+}
+
+/**
+ * =======================
+ * OpenBIS Search Criteria
+ * =======================
+ *
+ * Methods and classes for constructing search criteria objects for use in searches.
+ */
+
+/**
+ * It is easier to construct instances of match clauses using one of the factory methods:
+ *
+ * createPropertyMatch
+ * createAttributeMatch
+ * createTimeAttributeMatch
+ * createAnyPropertyMatch
+ * createAnyFieldMatch
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause
+ * @class
+ */
+function SearchCriteriaMatchClause(type, fieldType, fieldCode, desiredValue) {
+ this["@type"] = type;
+ this["fieldType"] = fieldType;
+ this["fieldCode"] = fieldCode;
+ this["desiredValue"] = desiredValue;
+ // compareMode should be one of "LESS_THAN_OR_EQUAL", "EQUALS", "GREATER_THAN_OR_EQUAL"
+ this["compareMode"] = "EQUALS";
+}
+
+/**
+ * Factory method to create a match for a property.
+ *
+ * @param propertyCode The code of the property to compare against
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createPropertyMatch(String, String)
+ * @method
+ */
+SearchCriteriaMatchClause.createPropertyMatch = function(propertyCode, desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("PropertyMatchClause", "PROPERTY", propertyCode, desiredValue);
+ matchClause["propertyCode"] = propertyCode;
+ return matchClause;
+}
+
+/**
+ * Factory method to create a match for an attribute.
+ *
+ * @param attribute Should be a valid ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute.
+ * It should come from this list:
+ * // common
+ * "CODE", "TYPE", "PERM_ID",
+ * // for sample or experiment
+ * "SPACE",
+ * // for experiment
+ * "PROJECT",
+ * // for all types of entities
+ * "METAPROJECT"
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAttributeMatch(MatchClauseAttribute, String)
+ * @method
+ */
+SearchCriteriaMatchClause.createAttributeMatch = function(attribute, desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("AttributeMatchClause", "ATTRIBUTE", attribute, desiredValue);
+ matchClause["attribute"] = attribute;
+ return matchClause;
+}
+
+/**
+ * Factory method to create a MatchClause matching against registration or modification
+ * date.
+ *
+ * @param attribute Should be a valid ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseTimeAttribute
+ * It should come from this list: REGISTRATION_DATE, MODIFICATION_DATE
+ *
+ * @param mode One of "LESS_THAN_OR_EQUAL", "EQUALS", "GREATER_THAN_OR_EQUAL"
+ * @param date The date to compare against, format YYYY-MM-DD
+ * @timezone The time zone of the date ("+1", "-5", "0", etc.)
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAttributeMatch(MatchClauseTimeAttribute, CompareMode, String, String)
+ * @method
+ */
+SearchCriteriaMatchClause.createTimeAttributeMatch = function(attribute, mode, date, timezone)
+{
+ var matchClause = new SearchCriteriaMatchClause("TimeAttributeMatchClause", "ATTRIBUTE", attribute, date);
+ matchClause["attribute"] = attribute;
+ matchClause["compareMode"] = mode;
+ matchClause["timeZone"] = timezone;
+ return matchClause;
+}
+
+/**
+ * Factory method to create a match for against any property.
+ *
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAnyPropertyMatch(String)
+ * @method
+ */
+SearchCriteriaMatchClause.createAnyPropertyMatch = function(desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("AnyPropertyMatchClause", "ANY_PROPERTY", null, desiredValue);
+ return matchClause;
+}
+
+/**
+ * Factory method to create a match for against any field (property or attribute).
+ *
+ * @param desiredValue The value used in the comparison
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause.createAnyFieldMatch(String)
+ * @method
+ */
+SearchCriteriaMatchClause.createAnyFieldMatch = function(desiredValue) {
+ var matchClause = new SearchCriteriaMatchClause("AnyFieldMatchClause", "ANY_FIELD", null, desiredValue);
+ return matchClause;
+}
+
+/**
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria
+ * @class
+ */
+function SearchCriteria() {
+ this["@type"] = "SearchCriteria";
+ // operator should be either of "MATCH_ALL_CLAUSES" or "MATCH_ANY_CLAUSES"
+ this["operator"] = "MATCH_ALL_CLAUSES";
+ this["matchClauses"] = [];
+ this["subCriterias"] = [];
+}
+
+/**
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.addMatchClause(MatchClause)
+ * @method
+ */
+SearchCriteria.prototype.addMatchClause = function(matchClause) {
+ this["matchClauses"].push(matchClause);
+};
+
+/**
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.addSubCriteria(SearchSubCriteria)
+ * @method
+ */
+SearchCriteria.prototype.addSubCriteria = function(subCriteria) {
+ this["subCriterias"].push(subCriteria);
+};
+
+
+/**
+ * It is easier to construct instances of sub criteria using one of the factory methods:
+ *
+ * createSampleParentCriteria
+ * createSampleChildCriteria
+ * createSampleContainerCriteria
+ * createSampleCriteria
+ * createExperimentCriteria
+ * createDataSetContainerCriteria
+ * createDataSetParentCriteria
+ * createDataSetChildCriteria
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria
+ * @class
+ */
+function SearchSubCriteria(targetEntityKind, searchCriteria) {
+ this["@type"] = "SearchSubCriteria";
+ this["targetEntityKind"] = targetEntityKind;
+ this["criteria"] = searchCriteria;
+}
+
+/**
+ * Factory method to create a match for a sample parent.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleParentCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleParentCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE_PARENT", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a sample child.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleChildCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleChildCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE_CHILD", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a sample container.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleContainerCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleContainerCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE_CONTAINER", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a sample.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createSampleCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createSampleCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("SAMPLE", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for an experiment.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createExperimentCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createExperimentCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("EXPERIMENT", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a data set container.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createDataSetContainerCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createDataSetContainerCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("DATA_SET_CONTAINER", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a data set parent.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createDataSetParentCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createDataSetParentCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("DATA_SET_PARENT", searchCriteria)
+}
+
+/**
+ * Factory method to create a match for a data set child.
+ *
+ * @see ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchSubCriteria.createDataSetChildCriteria(SearchCriteria)
+ * @method
+ */
+SearchSubCriteria.createDataSetChildCriteria = function(searchCriteria) {
+ return new SearchSubCriteria("DATA_SET_CHILD", searchCriteria)
+}
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/spin.min.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/spin.min.js
new file mode 100644
index 00000000000..942980c82a0
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/html/js/spin.min.js
@@ -0,0 +1,2 @@
+//fgnass.github.com/spin.js#v1.2.7
+!function(e,t,n){function o(e,n){var r=t.createElement(e||"div"),i;for(i in n)r[i]=n[i];return r}function u(e){for(var t=1,n=arguments.length;t<n;t++)e.appendChild(arguments[t]);return e}function f(e,t,n,r){var o=["opacity",t,~~(e*100),n,r].join("-"),u=.01+n/r*100,f=Math.max(1-(1-e)/t*(100-u),e),l=s.substring(0,s.indexOf("Animation")).toLowerCase(),c=l&&"-"+l+"-"||"";return i[o]||(a.insertRule("@"+c+"keyframes "+o+"{"+"0%{opacity:"+f+"}"+u+"%{opacity:"+e+"}"+(u+.01)+"%{opacity:1}"+(u+t)%100+"%{opacity:"+e+"}"+"100%{opacity:"+f+"}"+"}",a.cssRules.length),i[o]=1),o}function l(e,t){var i=e.style,s,o;if(i[t]!==n)return t;t=t.charAt(0).toUpperCase()+t.slice(1);for(o=0;o<r.length;o++){s=r[o]+t;if(i[s]!==n)return s}}function c(e,t){for(var n in t)e.style[l(e,n)||n]=t[n];return e}function h(e){for(var t=1;t<arguments.length;t++){var r=arguments[t];for(var i in r)e[i]===n&&(e[i]=r[i])}return e}function p(e){var t={x:e.offsetLeft,y:e.offsetTop};while(e=e.offsetParent)t.x+=e.offsetLeft,t.y+=e.offsetTop;return t}var r=["webkit","Moz","ms","O"],i={},s,a=function(){var e=o("style",{type:"text/css"});return u(t.getElementsByTagName("head")[0],e),e.sheet||e.styleSheet}(),d={lines:12,length:7,width:5,radius:10,rotate:0,corners:1,color:"#000",speed:1,trail:100,opacity:.25,fps:20,zIndex:2e9,className:"spinner",top:"auto",left:"auto",position:"relative"},v=function m(e){if(!this.spin)return new m(e);this.opts=h(e||{},m.defaults,d)};v.defaults={},h(v.prototype,{spin:function(e){this.stop();var t=this,n=t.opts,r=t.el=c(o(0,{className:n.className}),{position:n.position,width:0,zIndex:n.zIndex}),i=n.radius+n.length+n.width,u,a;e&&(e.insertBefore(r,e.firstChild||null),a=p(e),u=p(r),c(r,{left:(n.left=="auto"?a.x-u.x+(e.offsetWidth>>1):parseInt(n.left,10)+i)+"px",top:(n.top=="auto"?a.y-u.y+(e.offsetHeight>>1):parseInt(n.top,10)+i)+"px"})),r.setAttribute("aria-role","progressbar"),t.lines(r,t.opts);if(!s){var f=0,l=n.fps,h=l/n.speed,d=(1-n.opacity)/(h*n.trail/100),v=h/n.lines;(function m(){f++;for(var e=n.lines;e;e--){var i=Math.max(1-(f+e*v)%h*d,n.opacity);t.opacity(r,n.lines-e,i,n)}t.timeout=t.el&&setTimeout(m,~~(1e3/l))})()}return t},stop:function(){var e=this.el;return e&&(clearTimeout(this.timeout),e.parentNode&&e.parentNode.removeChild(e),this.el=n),this},lines:function(e,t){function i(e,r){return c(o(),{position:"absolute",width:t.length+t.width+"px",height:t.width+"px",background:e,boxShadow:r,transformOrigin:"left",transform:"rotate("+~~(360/t.lines*n+t.rotate)+"deg) translate("+t.radius+"px"+",0)",borderRadius:(t.corners*t.width>>1)+"px"})}var n=0,r;for(;n<t.lines;n++)r=c(o(),{position:"absolute",top:1+~(t.width/2)+"px",transform:t.hwaccel?"translate3d(0,0,0)":"",opacity:t.opacity,animation:s&&f(t.opacity,t.trail,n,t.lines)+" "+1/t.speed+"s linear infinite"}),t.shadow&&u(r,c(i("#000","0 0 4px #000"),{top:"2px"})),u(e,u(r,i(t.color,"0 0 1px rgba(0,0,0,.1)")));return e},opacity:function(e,t,n){t<e.childNodes.length&&(e.childNodes[t].style.opacity=n)}}),function(){function e(e,t){return o("<"+e+' xmlns="urn:schemas-microsoft.com:vml" class="spin-vml">',t)}var t=c(o("group"),{behavior:"url(#default#VML)"});!l(t,"transform")&&t.adj?(a.addRule(".spin-vml","behavior:url(#default#VML)"),v.prototype.lines=function(t,n){function s(){return c(e("group",{coordsize:i+" "+i,coordorigin:-r+" "+ -r}),{width:i,height:i})}function l(t,i,o){u(a,u(c(s(),{rotation:360/n.lines*t+"deg",left:~~i}),u(c(e("roundrect",{arcsize:n.corners}),{width:r,height:n.width,left:n.radius,top:-n.width>>1,filter:o}),e("fill",{color:n.color,opacity:n.opacity}),e("stroke",{opacity:0}))))}var r=n.length+n.width,i=2*r,o=-(n.width+n.length)*2+"px",a=c(s(),{position:"absolute",top:o,left:o}),f;if(n.shadow)for(f=1;f<=n.lines;f++)l(f,-2,"progid:DXImageTransform.Microsoft.Blur(pixelradius=2,makeshadow=1,shadowopacity=.3)");for(f=1;f<=n.lines;f++)l(f);return u(t,a)},v.prototype.opacity=function(e,t,n,r){var i=e.firstChild;r=r.shadow&&r.lines||0,i&&t+r<i.childNodes.length&&(i=i.childNodes[t+r],i=i&&i.firstChild,i=i&&i.firstChild,i&&(i.opacity=n))}):s=l(t,"animation")}(),typeof define=="function"&&define.amd?define(function(){return v}):e.Spinner=v}(window,document);
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/plugin.properties
new file mode 100644
index 00000000000..26b2c9b16e7
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/demultiplexing/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = sample-details-view
+sample-entity-types = ILLUMINA_FLOW_CELL
+label = Demultiplex
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/body-style.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/body-style.css
new file mode 100644
index 00000000000..31d71932834
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/body-style.css
@@ -0,0 +1,60 @@
+
+input {
+border: 0px solid;
+height: 25px;
+border-color:#000000;
+outline: none;
+font: 18px "Trebuchet MS";
+}
+
+body { font: 14px "Trebuchet MS", sans-serif; }
+
+h1 {
+font: 10px;
+color:#999999;
+ }
+h3 { font: 12px; }
+
+.greytext {font: 18px "Trebuchet MS";}
+.greytext:link {color:#BDBDBD; text-decoration:none}
+.greytext:visited {color:#BDBDBD; text-decoration:none}
+.greytext:active {color:#BDBDBD; text-decoration:none}
+.greytext:hover {color:#000000; text-decoration:none}
+.greytext input {color:#999999; text-decoration:none}
+
+
+.box {
+background-color: white;
+text-rendering: optimizeLegibility;
+-webkit-border-radius: 6px;
+height: 50px;
+width: 480px;
+margin-top: 30px;
+padding: 8px 8px 8px 50px;
+border: 3px solid #999999;
+box-sizing: border-box;
+-webkit-box-sizing: border-box;
+-moz-box-sizing: border-box;
+border-radius: 6px 6px 6px 6px;
+}
+
+.loginname {
+background-image: url(images/sprite.png);
+background-repeat: no-repeat;
+background-position: 5px 10px;
+}
+
+.password {
+background-image: url(images/sprite.png);
+background-repeat: no-repeat;
+background-position: 5px -30px;
+}
+
+.loginbutton {
+margin-top: 30px;
+}
+
+div
+{
+}
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/button.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/button.css
new file mode 100644
index 00000000000..37c8cbc7bef
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/button.css
@@ -0,0 +1,39 @@
+button {
+ font: 18px "Trebuchet MS";
+ background-color: #222;
+ background-image: -moz-linear-gradient(top, rgba(255,255,255,.25), rgba(255,255,255,.11));
+ background-image: -webkit-gradient(linear,left top,left bottom,color-stop(0, rgba(255,255,255,.25)),color-stop(1, rgba(255,255,255,.11)));
+ background-image: -webkit-linear-gradient(rgba(255,255,255,.25), rgba(255,255,255,.11));
+ color: #fff;
+ text-rendering: optimizeLegibility;
+ text-shadow: 0 -1px 1px #222;
+ padding: 3px 5px 3px 5px;
+ border: 0;
+ border-radius: 6px;
+ border-bottom: 1px solid #222;
+ margin: 0;
+ -moz-box-shadow: 0 1px 3px #999;
+ -webkit-box-shadow: 0 1px 3px #999;
+ box-shadow: 0 1px 3px #999;
+ width: 150px;
+}
+
+button.first {
+ border-top-left-radius: 6px;
+ border-bottom-left-radius: 6px;
+}
+
+button.last {
+ border-top-right-radius: 6px;
+ border-bottom-right-radius: 6px;
+}
+
+button.active {
+ background-color:red;
+}
+
+button:hover {
+ background-color: grey;
+ cursor: pointer;
+}
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/d3.time.js b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/d3.time.js
new file mode 100644
index 00000000000..e1c0831c88e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/d3.time.js
@@ -0,0 +1,692 @@
+(function(){d3.time = {};
+
+var d3_time = Date;
+d3.time.format = function(template) {
+ var n = template.length;
+
+ function format(date) {
+ var string = [],
+ i = -1,
+ j = 0,
+ c,
+ f;
+ while (++i < n) {
+ if (template.charCodeAt(i) == 37) {
+ string.push(
+ template.substring(j, i),
+ (f = d3_time_formats[c = template.charAt(++i)])
+ ? f(date) : c);
+ j = i + 1;
+ }
+ }
+ string.push(template.substring(j, i));
+ return string.join("");
+ }
+
+ format.parse = function(string) {
+ var date = new d3_time(1900, 0, 1),
+ i = d3_time_parse(date, template, string, 0);
+ if (i != string.length) return null;
+ if (date.hour12) {
+ var hours = date.getHours() % 12;
+ date.setHours(date.hour12pm ? hours + 12 : hours);
+ }
+ delete date.hour12;
+ delete date.hour12pm;
+ return date;
+ };
+
+ format.toString = function() {
+ return template;
+ };
+
+ return format;
+};
+
+function d3_time_parse(date, template, string, j) {
+ var c,
+ p,
+ i = 0,
+ n = template.length,
+ m = string.length;
+ while (i < n) {
+ if (j >= m) return -1;
+ c = template.charCodeAt(i++);
+ if (c == 37) {
+ p = d3_time_parsers[template.charAt(i++)];
+ if (!p || ((j = p(date, string, j)) < 0)) return -1;
+ } else if (c != string.charCodeAt(j++)) {
+ return -1;
+ }
+ }
+ return j;
+}
+
+var d3_time_zfill2 = d3.format("02d"),
+ d3_time_zfill3 = d3.format("03d"),
+ d3_time_zfill4 = d3.format("04d"),
+ d3_time_sfill2 = d3.format("2d");
+
+var d3_time_formats = {
+ a: function(d) { return d3_time_weekdays[d.getDay()].substring(0, 3); },
+ A: function(d) { return d3_time_weekdays[d.getDay()]; },
+ b: function(d) { return d3_time_months[d.getMonth()].substring(0, 3); },
+ B: function(d) { return d3_time_months[d.getMonth()]; },
+ c: d3.time.format("%a %b %e %H:%M:%S %Y"),
+ d: function(d) { return d3_time_zfill2(d.getDate()); },
+ e: function(d) { return d3_time_sfill2(d.getDate()); },
+ H: function(d) { return d3_time_zfill2(d.getHours()); },
+ I: function(d) { return d3_time_zfill2(d.getHours() % 12 || 12); },
+ j: d3_time_dayOfYear,
+ L: function(d) { return d3_time_zfill3(d.getMilliseconds()); },
+ m: function(d) { return d3_time_zfill2(d.getMonth() + 1); },
+ M: function(d) { return d3_time_zfill2(d.getMinutes()); },
+ p: function(d) { return d.getHours() >= 12 ? "PM" : "AM"; },
+ S: function(d) { return d3_time_zfill2(d.getSeconds()); },
+ U: d3_time_weekNumberSunday,
+ w: function(d) { return d.getDay(); },
+ W: d3_time_weekNumberMonday,
+ x: d3.time.format("%m/%d/%y"),
+ X: d3.time.format("%H:%M:%S"),
+ y: function(d) { return d3_time_zfill2(d.getFullYear() % 100); },
+ Y: function(d) { return d3_time_zfill4(d.getFullYear() % 10000); },
+ Z: d3_time_zone,
+ "%": function(d) { return "%"; }
+};
+
+var d3_time_parsers = {
+ a: d3_time_parseWeekdayAbbrev,
+ A: d3_time_parseWeekday,
+ b: d3_time_parseMonthAbbrev,
+ B: d3_time_parseMonth,
+ c: d3_time_parseLocaleFull,
+ d: d3_time_parseDay,
+ e: d3_time_parseDay,
+ H: d3_time_parseHour24,
+ I: d3_time_parseHour12,
+ // j: function(d, s, i) { /*TODO day of year [001,366] */ return i; },
+ L: d3_time_parseMilliseconds,
+ m: d3_time_parseMonthNumber,
+ M: d3_time_parseMinutes,
+ p: d3_time_parseAmPm,
+ S: d3_time_parseSeconds,
+ // U: function(d, s, i) { /*TODO week number (sunday) [00,53] */ return i; },
+ // w: function(d, s, i) { /*TODO weekday [0,6] */ return i; },
+ // W: function(d, s, i) { /*TODO week number (monday) [00,53] */ return i; },
+ x: d3_time_parseLocaleDate,
+ X: d3_time_parseLocaleTime,
+ y: d3_time_parseYear,
+ Y: d3_time_parseFullYear
+ // ,
+ // Z: function(d, s, i) { /*TODO time zone */ return i; },
+ // "%": function(d, s, i) { /*TODO literal % */ return i; }
+};
+
+// Note: weekday is validated, but does not set the date.
+function d3_time_parseWeekdayAbbrev(date, string, i) {
+ return string.substring(i, i += 3).toLowerCase() in d3_time_weekdayAbbrevLookup ? i : -1;
+}
+
+var d3_time_weekdayAbbrevLookup = {
+ sun: 3,
+ mon: 3,
+ tue: 3,
+ wed: 3,
+ thu: 3,
+ fri: 3,
+ sat: 3
+};
+
+// Note: weekday is validated, but does not set the date.
+function d3_time_parseWeekday(date, string, i) {
+ d3_time_weekdayRe.lastIndex = 0;
+ var n = d3_time_weekdayRe.exec(string.substring(i, i + 10));
+ return n ? i += n[0].length : -1;
+}
+
+var d3_time_weekdayRe = /^(?:Sunday|Monday|Tuesday|Wednesday|Thursday|Friday|Saturday)/ig;
+
+var d3_time_weekdays = [
+ "Sunday",
+ "Monday",
+ "Tuesday",
+ "Wednesday",
+ "Thursday",
+ "Friday",
+ "Saturday"
+];
+
+function d3_time_parseMonthAbbrev(date, string, i) {
+ var n = d3_time_monthAbbrevLookup[string.substring(i, i += 3).toLowerCase()];
+ return n == null ? -1 : (date.setMonth(n), i);
+}
+
+var d3_time_monthAbbrevLookup = {
+ jan: 0,
+ feb: 1,
+ mar: 2,
+ apr: 3,
+ may: 4,
+ jun: 5,
+ jul: 6,
+ aug: 7,
+ sep: 8,
+ oct: 9,
+ nov: 10,
+ dec: 11
+};
+
+function d3_time_parseMonth(date, string, i) {
+ d3_time_monthRe.lastIndex = 0;
+ var n = d3_time_monthRe.exec(string.substring(i, i + 12));
+ return n ? (date.setMonth(d3_time_monthLookup[n[0].toLowerCase()]), i += n[0].length) : -1;
+}
+
+var d3_time_monthRe = /^(?:January|February|March|April|May|June|July|August|September|October|November|December)/ig;
+
+var d3_time_monthLookup = {
+ january: 0,
+ february: 1,
+ march: 2,
+ april: 3,
+ may: 4,
+ june: 5,
+ july: 6,
+ august: 7,
+ september: 8,
+ october: 9,
+ november: 10,
+ december: 11
+};
+
+var d3_time_months = [
+ "January",
+ "February",
+ "March",
+ "April",
+ "May",
+ "June",
+ "July",
+ "August",
+ "September",
+ "October",
+ "November",
+ "December"
+];
+
+function d3_time_parseLocaleFull(date, string, i) {
+ return d3_time_parse(date, d3_time_formats.c.toString(), string, i);
+}
+
+function d3_time_parseLocaleDate(date, string, i) {
+ return d3_time_parse(date, d3_time_formats.x.toString(), string, i);
+}
+
+function d3_time_parseLocaleTime(date, string, i) {
+ return d3_time_parse(date, d3_time_formats.X.toString(), string, i);
+}
+
+function d3_time_parseFullYear(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 4));
+ return n ? (date.setFullYear(n[0]), i += n[0].length) : -1;
+}
+
+function d3_time_parseYear(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 2));
+ return n ? (date.setFullYear(d3_time_century() + +n[0]), i += n[0].length) : -1;
+}
+
+function d3_time_century() {
+ return ~~(new Date().getFullYear() / 1000) * 1000;
+}
+
+function d3_time_parseMonthNumber(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 2));
+ return n ? (date.setMonth(n[0] - 1), i += n[0].length) : -1;
+}
+
+function d3_time_parseDay(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 2));
+ return n ? (date.setDate(+n[0]), i += n[0].length) : -1;
+}
+
+// Note: we don't validate that the hour is in the range [0,23].
+function d3_time_parseHour24(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 2));
+ return n ? (date.setHours(+n[0]), i += n[0].length) : -1;
+}
+
+// Note: we don't validate that the hour is in the range [1,12].
+function d3_time_parseHour12(date, string, i) {
+ date.hour12 = true;
+ return d3_time_parseHour24(date, string, i);
+}
+
+function d3_time_parseMinutes(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 2));
+ return n ? (date.setMinutes(+n[0]), i += n[0].length) : -1;
+}
+
+function d3_time_parseSeconds(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 2));
+ return n ? (date.setSeconds(+n[0]), i += n[0].length) : -1;
+}
+
+function d3_time_parseMilliseconds(date, string, i) {
+ d3_time_numberRe.lastIndex = 0;
+ var n = d3_time_numberRe.exec(string.substring(i, i + 3));
+ return n ? (date.setMilliseconds(+n[0]), i += n[0].length) : -1;
+}
+
+// Note: we don't look at the next directive.
+var d3_time_numberRe = /\s*\d+/;
+
+function d3_time_parseAmPm(date, string, i) {
+ var n = d3_time_amPmLookup[string.substring(i, i += 2).toLowerCase()];
+ return n == null ? -1 : (date.hour12pm = n, i);
+}
+
+var d3_time_amPmLookup = {
+ am: 0,
+ pm: 1
+};
+
+function d3_time_year(d) {
+ return new d3_time(d.getFullYear(), 0, 1);
+}
+
+function d3_time_daysElapsed(d0, d1) {
+ return ~~((d1 - d0) / 864e5 - (d1.getTimezoneOffset() - d0.getTimezoneOffset()) / 1440);
+}
+
+function d3_time_dayOfYear(d) {
+ return d3_time_zfill3(1 + d3_time_daysElapsed(d3_time_year(d), d));
+}
+
+function d3_time_weekNumberSunday(d) {
+ var d0 = d3_time_year(d);
+ return d3_time_zfill2(~~((d3_time_daysElapsed(d0, d) + d0.getDay()) / 7));
+}
+
+function d3_time_weekNumberMonday(d) {
+ var d0 = d3_time_year(d);
+ return d3_time_zfill2(~~((d3_time_daysElapsed(d0, d) + (d0.getDay() + 6) % 7) / 7));
+}
+
+// TODO table of time zone offset names?
+function d3_time_zone(d) {
+ var z = d.getTimezoneOffset(),
+ zs = z > 0 ? "-" : "+",
+ zh = ~~(Math.abs(z) / 60),
+ zm = Math.abs(z) % 60;
+ return zs + d3_time_zfill2(zh) + d3_time_zfill2(zm);
+}
+d3.time.format.utc = function(template) {
+ var local = d3.time.format(template);
+
+ function format(date) {
+ try {
+ d3_time = d3_time_format_utc;
+ var utc = new d3_time();
+ utc._ = date;
+ return local(utc);
+ } finally {
+ d3_time = Date;
+ }
+ }
+
+ format.parse = function(string) {
+ try {
+ d3_time = d3_time_format_utc;
+ var date = local.parse(string);
+ return date && date._;
+ } finally {
+ d3_time = Date;
+ }
+ };
+
+ format.toString = local.toString;
+
+ return format;
+};
+
+function d3_time_format_utc() {
+ this._ = new Date(Date.UTC.apply(this, arguments));
+}
+
+d3_time_format_utc.prototype = {
+ getDate: function() { return this._.getUTCDate(); },
+ getDay: function() { return this._.getUTCDay(); },
+ getFullYear: function() { return this._.getUTCFullYear(); },
+ getHours: function() { return this._.getUTCHours(); },
+ getMilliseconds: function() { return this._.getUTCMilliseconds(); },
+ getMinutes: function() { return this._.getUTCMinutes(); },
+ getMonth: function() { return this._.getUTCMonth(); },
+ getSeconds: function() { return this._.getUTCSeconds(); },
+ getTimezoneOffset: function() { return 0; },
+ valueOf: function() { return this._.getTime(); },
+ setDate: function(x) { this._.setUTCDate(x); },
+ setDay: function(x) { this._.setUTCDay(x); },
+ setFullYear: function(x) { this._.setUTCFullYear(x); },
+ setHours: function(x) { this._.setUTCHours(x); },
+ setMilliseconds: function(x) { this._.setUTCMilliseconds(x); },
+ setMinutes: function(x) { this._.setUTCMinutes(x); },
+ setMonth: function(x) { this._.setUTCMonth(x); },
+ setSeconds: function(x) { this._.setUTCSeconds(x); }
+};
+var d3_time_formatIso = d3.time.format.utc("%Y-%m-%dT%H:%M:%S.%LZ");
+
+d3.time.format.iso = Date.prototype.toISOString ? d3_time_formatIsoNative : d3_time_formatIso;
+
+function d3_time_formatIsoNative(date) {
+ return date.toISOString();
+}
+
+d3_time_formatIsoNative.parse = function(string) {
+ return new Date(string);
+};
+
+d3_time_formatIsoNative.toString = d3_time_formatIso.toString;
+function d3_time_range(floor, step, number) {
+ return function(t0, t1, dt) {
+ var time = floor(t0), times = [];
+ if (time < t0) step(time);
+ if (dt > 1) {
+ while (time < t1) {
+ var date = new Date(+time);
+ if (!(number(date) % dt)) times.push(date);
+ step(time);
+ }
+ } else {
+ while (time < t1) times.push(new Date(+time)), step(time);
+ }
+ return times;
+ };
+}
+d3.time.second = function(date) {
+ return new Date(~~(date / 1e3) * 1e3);
+};
+
+d3.time.second.utc = d3.time.second;
+d3.time.seconds = d3_time_range(d3.time.second, function(date) {
+ date.setTime(date.getTime() + 1e3);
+}, function(date) {
+ return date.getSeconds();
+});
+
+d3.time.seconds.utc = d3.time.seconds;
+d3.time.minute = function(date) {
+ return new Date(~~(date / 6e4) * 6e4);
+};
+
+d3.time.minute.utc = d3.time.minute;d3.time.minutes = d3_time_range(d3.time.minute, d3_time_minutesStep, function(date) {
+ return date.getMinutes();
+});
+
+d3.time.minutes.utc = d3_time_range(d3.time.minute, d3_time_minutesStep, function(date) {
+ return date.getUTCMinutes();
+});
+
+function d3_time_minutesStep(date) {
+ date.setTime(date.getTime() + 6e4); // assumes no leap seconds
+}
+d3.time.hour = function(date) {
+ var offset = date.getTimezoneOffset() / 60;
+ return new Date((~~(date / 36e5 - offset) + offset) * 36e5);
+};
+
+d3.time.hour.utc = function(date) {
+ return new Date(~~(date / 36e5) * 36e5);
+};
+d3.time.hours = d3_time_range(d3.time.hour, d3_time_hoursStep, function(date) {
+ return date.getHours();
+});
+
+d3.time.hours.utc = d3_time_range(d3.time.hour.utc, d3_time_hoursStep, function(date) {
+ return date.getUTCHours();
+});
+
+function d3_time_hoursStep(date) {
+ date.setTime(date.getTime() + 36e5);
+}
+d3.time.day = function(date) {
+ return new Date(date.getFullYear(), date.getMonth(), date.getDate());
+};
+
+d3.time.day.utc = function(date) {
+ return new Date(~~(date / 864e5) * 864e5);
+};
+d3.time.days = d3_time_range(d3.time.day, function(date) {
+ date.setDate(date.getDate() + 1);
+}, function(date) {
+ return date.getDate() - 1;
+});
+
+d3.time.days.utc = d3_time_range(d3.time.day.utc, function(date) {
+ date.setUTCDate(date.getUTCDate() + 1);
+}, function(date) {
+ return date.getUTCDate() - 1;
+});
+d3.time.week = function(date) {
+ (date = d3.time.day(date)).setDate(date.getDate() - date.getDay());
+ return date;
+};
+
+d3.time.week.utc = function(date) {
+ (date = d3.time.day.utc(date)).setUTCDate(date.getUTCDate() - date.getUTCDay());
+ return date;
+};
+d3.time.weeks = d3_time_range(d3.time.week, function(date) {
+ date.setDate(date.getDate() + 7);
+}, function(date) {
+ return ~~((date - new Date(date.getFullYear(), 0, 1)) / 6048e5);
+});
+
+d3.time.weeks.utc = d3_time_range(d3.time.week.utc, function(date) {
+ date.setUTCDate(date.getUTCDate() + 7);
+}, function(date) {
+ return ~~((date - Date.UTC(date.getUTCFullYear(), 0, 1)) / 6048e5);
+});
+d3.time.month = function(date) {
+ return new Date(date.getFullYear(), date.getMonth(), 1);
+};
+
+d3.time.month.utc = function(date) {
+ return new Date(Date.UTC(date.getUTCFullYear(), date.getUTCMonth(), 1));
+};
+d3.time.months = d3_time_range(d3.time.month, function(date) {
+ date.setMonth(date.getMonth() + 1);
+}, function(date) {
+ return date.getMonth();
+});
+
+d3.time.months.utc = d3_time_range(d3.time.month.utc, function(date) {
+ date.setUTCMonth(date.getUTCMonth() + 1);
+}, function(date) {
+ return date.getUTCMonth();
+});
+d3.time.year = function(date) {
+ return new Date(date.getFullYear(), 0, 1);
+};
+
+d3.time.year.utc = function(date) {
+ return new Date(Date.UTC(date.getUTCFullYear(), 0, 1));
+};
+d3.time.years = d3_time_range(d3.time.year, function(date) {
+ date.setFullYear(date.getFullYear() + 1);
+}, function(date) {
+ return date.getFullYear();
+});
+
+d3.time.years.utc = d3_time_range(d3.time.year.utc, function(date) {
+ date.setUTCFullYear(date.getUTCFullYear() + 1);
+}, function(date) {
+ return date.getUTCFullYear();
+});
+// TODO nice
+function d3_time_scale(linear, methods, format) {
+
+ function scale(x) {
+ return linear(x);
+ }
+
+ scale.invert = function(x) {
+ return d3_time_scaleDate(linear.invert(x));
+ };
+
+ scale.domain = function(x) {
+ if (!arguments.length) return linear.domain().map(d3_time_scaleDate);
+ linear.domain(x);
+ return scale;
+ };
+
+ scale.ticks = function(m, k) {
+ var extent = d3_time_scaleExtent(scale.domain());
+ if (typeof m !== "function") {
+ var span = extent[1] - extent[0],
+ target = span / m,
+ i = d3.bisect(d3_time_scaleSteps, target, 1, d3_time_scaleSteps.length - 1);
+ if (Math.log(target / d3_time_scaleSteps[i - 1]) < Math.log(d3_time_scaleSteps[i] / target)) --i;
+ m = methods[i];
+ k = m[1];
+ m = m[0];
+ }
+ return m(extent[0], extent[1], k);
+ };
+
+ scale.tickFormat = function() {
+ return format;
+ };
+
+ scale.copy = function() {
+ return d3_time_scale(linear.copy(), methods, format);
+ };
+
+ // TOOD expose d3_scale_linear_rebind?
+ scale.range = d3.rebind(scale, linear.range);
+ scale.rangeRound = d3.rebind(scale, linear.rangeRound);
+ scale.interpolate = d3.rebind(scale, linear.interpolate);
+ scale.clamp = d3.rebind(scale, linear.clamp);
+
+ return scale;
+}
+
+// TODO expose d3_scaleExtent?
+function d3_time_scaleExtent(domain) {
+ var start = domain[0], stop = domain[domain.length - 1];
+ return start < stop ? [start, stop] : [stop, start];
+}
+
+function d3_time_scaleDate(t) {
+ return new Date(t);
+}
+
+function d3_time_scaleFormat(formats) {
+ return function(date) {
+ var i = formats.length - 1, f = formats[i];
+ while (!f[1](date)) f = formats[--i];
+ return f[0](date);
+ };
+}
+
+var d3_time_scaleSteps = [
+ 1e3, // 1-second
+ 5e3, // 5-second
+ 15e3, // 15-second
+ 3e4, // 30-second
+ 6e4, // 1-minute
+ 3e5, // 5-minute
+ 9e5, // 15-minute
+ 18e5, // 30-minute
+ 36e5, // 1-hour
+ 108e5, // 3-hour
+ 216e5, // 6-hour
+ 432e5, // 12-hour
+ 864e5, // 1-day
+ 1728e5, // 2-day
+ 6048e5, // 1-week
+ 1728e6, // 1-month
+ 7776e6, // 3-month
+ 31536e6 // 1-year
+];
+
+var d3_time_scaleLocalMethods = [
+ [d3.time.seconds, 1],
+ [d3.time.seconds, 5],
+ [d3.time.seconds, 15],
+ [d3.time.seconds, 30],
+ [d3.time.minutes, 1],
+ [d3.time.minutes, 5],
+ [d3.time.minutes, 15],
+ [d3.time.minutes, 30],
+ [d3.time.hours, 1],
+ [d3.time.hours, 3],
+ [d3.time.hours, 6],
+ [d3.time.hours, 12],
+ [d3.time.days, 1],
+ [d3.time.days, 2],
+ [d3.time.weeks, 1],
+ [d3.time.months, 1],
+ [d3.time.months, 3],
+ [d3.time.years, 1]
+];
+
+var d3_time_scaleLocalFormats = [
+ [d3.time.format("%Y"), function(d) { return true; }],
+ [d3.time.format("%B"), function(d) { return d.getMonth(); }],
+ [d3.time.format("%b %d"), function(d) { return d.getDate() != 1; }],
+ [d3.time.format("%a %d"), function(d) { return d.getDay() && d.getDate() != 1; }],
+ [d3.time.format("%I %p"), function(d) { return d.getHours(); }],
+ [d3.time.format("%I:%M"), function(d) { return d.getMinutes(); }],
+ [d3.time.format(":%S"), function(d) { return d.getSeconds() || d.getMilliseconds(); }]
+];
+
+var d3_time_scaleLocalFormat = d3_time_scaleFormat(d3_time_scaleLocalFormats);
+
+d3.time.scale = function() {
+ return d3_time_scale(d3.scale.linear(), d3_time_scaleLocalMethods, d3_time_scaleLocalFormat);
+};
+var d3_time_scaleUTCMethods = [
+ [d3.time.seconds.utc, 1],
+ [d3.time.seconds.utc, 5],
+ [d3.time.seconds.utc, 15],
+ [d3.time.seconds.utc, 30],
+ [d3.time.minutes.utc, 1],
+ [d3.time.minutes.utc, 5],
+ [d3.time.minutes.utc, 15],
+ [d3.time.minutes.utc, 30],
+ [d3.time.hours.utc, 1],
+ [d3.time.hours.utc, 3],
+ [d3.time.hours.utc, 6],
+ [d3.time.hours.utc, 12],
+ [d3.time.days.utc, 1],
+ [d3.time.days.utc, 2],
+ [d3.time.weeks.utc, 1],
+ [d3.time.months.utc, 1],
+ [d3.time.months.utc, 3],
+ [d3.time.years.utc, 1]
+];
+
+var d3_time_scaleUTCFormats = [
+ [d3.time.format.utc("%Y"), function(d) { return true; }],
+ [d3.time.format.utc("%B"), function(d) { return d.getUTCMonth(); }],
+ [d3.time.format.utc("%b %d"), function(d) { return d.getUTCDate() != 1; }],
+ [d3.time.format.utc("%a %d"), function(d) { return d.getUTCDay() && d.getUTCDate() != 1; }],
+ [d3.time.format.utc("%I %p"), function(d) { return d.getUTCHours(); }],
+ [d3.time.format.utc("%I:%M"), function(d) { return d.getUTCMinutes(); }],
+ [d3.time.format.utc(":%S"), function(d) { return d.getUTCSeconds() || d.getUTCMilliseconds(); }]
+];
+
+var d3_time_scaleUTCFormat = d3_time_scaleFormat(d3_time_scaleUTCFormats);
+
+d3.time.scale.utc = function() {
+ return d3_time_scale(d3.scale.linear(), d3_time_scaleUTCMethods, d3_time_scaleUTCFormat);
+};
+})();
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/images/openBIS_Logo.svg b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/images/openBIS_Logo.svg
new file mode 100755
index 00000000000..811623c73d2
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/images/openBIS_Logo.svg
@@ -0,0 +1,68 @@
+<?xml version="1.0" encoding="utf-8"?>
+<!-- Generator: Adobe Illustrator 15.0.2, SVG Export Plug-In . SVG Version: 6.00 Build 0) -->
+<!DOCTYPE svg PUBLIC "-//W3C//DTD SVG 1.1//EN" "http://www.w3.org/Graphics/SVG/1.1/DTD/svg11.dtd">
+<svg version="1.1" xmlns="http://www.w3.org/2000/svg" xmlns:xlink="http://www.w3.org/1999/xlink" x="0px" y="0px"
+ width="400.023px" height="174.566px" viewBox="0 0 400.023 174.566" enable-background="new 0 0 400.023 174.566"
+ xml:space="preserve">
+<g id="Layer_1">
+ <g>
+ <text transform="matrix(1 0 0 1 46.4854 154.2764)"><tspan x="0" y="0" fill="#010101" font-family="'HelveticaNeue-Bold'" font-size="93.505" letter-spacing="-4">open</tspan><tspan x="204.679" y="0" fill="#231F20" font-family="'HelveticaNeue'" font-size="93.505">BIS</tspan></text>
+ <rect x="204.234" y="158.748" fill="none" width="192.64" height="14.936"/>
+ <text transform="matrix(1 0 0 1 204.2329 169.876)" fill="#010101" font-family="'HelveticaNeue'" font-size="15.5842">Biology Information System</text>
+ <g>
+ <g>
+ <g>
+ <g>
+ <polygon fill="#068172" points="125.213,81.967 141.416,98.167 147.252,92.333 131.053,76.132 125.213,76.132 "/>
+ </g>
+ <g>
+ <g>
+ <polygon fill="#068172" points="120.206,81.967 104.005,98.167 98.168,92.333 114.368,76.132 120.206,76.132 "/>
+ </g>
+ <g>
+ <polygon fill="#068172" points="120.206,65.286 104.005,49.084 98.168,54.92 114.368,71.12 120.206,71.12 "/>
+ </g>
+ </g>
+ </g>
+ <g>
+ <polygon fill="#068172" points="125.213,65.286 141.416,49.084 147.252,54.92 131.053,71.12 125.213,71.12 "/>
+ </g>
+ </g>
+ <g>
+ <g>
+ <polygon fill="#A4A4A4" points="76.131,16.201 92.331,0 98.168,5.836 81.969,22.036 76.13,22.036 "/>
+ </g>
+ <g>
+ <g>
+ <polygon fill="#ADACAF" points="76.131,32.882 92.331,49.084 98.168,43.247 81.969,27.048 76.13,27.048 "/>
+ </g>
+ <g>
+ <g>
+ <polygon fill="#ADACAF" points="71.122,32.882 54.921,49.084 49.084,43.247 65.283,27.048 71.123,27.048 "/>
+ </g>
+ <g>
+ <polygon fill="#ADACAF" points="71.122,16.201 54.921,0 49.084,5.836 65.283,22.036 71.123,22.036 "/>
+ </g>
+ </g>
+ </g>
+ </g>
+ <g>
+ <g>
+ <polygon fill="#ADACAF" points="27.046,65.286 43.247,49.084 49.083,54.92 32.884,71.12 27.045,71.12 "/>
+ </g>
+ <g>
+ <polygon fill="#ADACAF" points="27.046,81.967 43.247,98.167 49.083,92.333 32.884,76.132 27.045,76.132 "/>
+ </g>
+ <g>
+ <polygon fill="#ADACAF" points="22.038,81.967 5.837,98.167 0,92.333 16.199,76.132 22.038,76.132 "/>
+ </g>
+ <g>
+ <polygon fill="#ADACAF" points="22.038,65.286 5.837,49.084 0,54.92 16.199,71.12 22.038,71.12 "/>
+ </g>
+ </g>
+ </g>
+ </g>
+</g>
+<g id="Layer_2">
+</g>
+</svg>
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/index.html
new file mode 120000
index 00000000000..3391e4bfcde
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/index.html
@@ -0,0 +1 @@
+openbis-dsu-downloader.html
\ No newline at end of file
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/openbis-dsu-downloader.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/openbis-dsu-downloader.html
new file mode 100644
index 00000000000..6ab8f261497
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/openbis-dsu-downloader.html
@@ -0,0 +1,836 @@
+<!DOCTYPE html PUBLIC "-//W3C//DTD XHTML 1.0 Transitional//EN" "http://www.w3.org/TR/xhtml1/DTD/xhtml1-transitional.dtd">
+<html xmlns="http://www.w3.org/1999/xhtml">
+<head>
+ <title>Quantitative Genomics Facility</title>
+
+ <meta http-equiv="X-UA-Compatible" content="IE=Edge" />
+ <meta http-equiv="Content-Type" content="text/html; charset=UTF-8" />
+ <meta name="google" value="notranslate">
+
+ <link type="text/css" rel="stylesheet" href="body-style.css" />
+ <link type="text/css" rel="stylesheet" href="button.css" />
+ <link type="text/css" rel="stylesheet" href="tree.css" />
+ <script type="text/javascript" src="/openbis/resources/js/d3.v3.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/d3.layout.js"></script>
+ <script type="text/javascript" src="d3.time.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-dsu.js"></script>
+ <!-- To speed development, cache the requests -->
+ <!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
+ <script>
+
+dsu = new openbis_dsu('https://openbis-dsu.ethz.ch/openbis/openbis', 'https://openbis-dsu.ethz.ch/datastore_server');
+
+//After logout the URL redirected to, just go to current URL in this case
+var logouturl = $(location).attr('href');
+
+// A helper function for drawing the lines between nodes
+var diagonal = d3.svg.diagonal().projection(function(d) { return [d.y, d.x] });
+
+// The tree visualization
+var vis;
+
+// The node inspectors
+var inspectors;
+
+var inspectorsWidth = 600;
+
+// The root of the tree
+var root = { code : "QGF", label: "QGF", children : [], type: 'ROOT' };
+
+// The inspected elements
+var inspected = [];
+
+// A date formatter for grouping samples by registration year / month
+var yearmonthformat = d3.time.format("%Y-%m");
+
+///
+/// FUNCTIONS FOR PUTTING DATA INTO THE TREE
+///
+
+function initTree(){
+ dsu.retrieveSequencingSamples(function(data){
+ addSamplesToTree(data.result);
+ showSpaces();
+ updateDiagram(500);
+ });
+}
+
+function addSamplesToTree(samples)
+{
+ if (samples == null){
+ return;
+ }
+
+ // Create sample nodes
+ samples = samples.map(function(sample) {
+ return {
+ code : sample.permId,
+ label: sample.properties["EXTERNAL_SAMPLE_NAME"] + " [" + sample.code + "]",
+ bis: sample,
+ type: 'SAMPLE'
+ }
+ });
+
+ sortArray(samples, 'code', false);
+
+ // Create sample group nodes (group by registration date)
+ var sampleGroupsMap = [];
+ var sampleGroups = [];
+
+ samples.forEach(function(sample) {
+ var date = yearmonthformat(new Date(sample.bis.registrationDetails.registrationDate));
+ var sampleGroup = sampleGroupsMap[date];
+
+ if (undefined === sampleGroup) {
+ sampleGroup = {
+ code: date,
+ label: date,
+ samples: [],
+ type: 'SAMPLE_GROUP'
+ };
+ sampleGroupsMap[date] = sampleGroup;
+ sampleGroups.push(sampleGroup);
+ }
+ sampleGroup.samples.push(sample);
+ });
+
+ // Sort sample groups from newest to oldest
+ sortArray(sampleGroups, 'code', false);
+
+ // Create space nodes
+ var isFirstSampleGroup = true;
+ sampleGroups.forEach(function(sampleGroup){
+ var spacesMap = [];
+ var spaces = [];
+
+ sampleGroup.samples.forEach(function(sample){
+ var spaceCode = sample.bis.spaceCode;
+ var space = spacesMap[spaceCode];
+
+ if(undefined == space){
+ space = {
+ code: sampleGroup.code + "#" + spaceCode,
+ label: spaceCode,
+ _children: [],
+ type: 'SPACE'
+ }
+ spacesMap[spaceCode] = space;
+ spaces.push(space);
+ }
+ space._children.push(sample);
+ });
+
+ // Sort spacees
+ spaces.sort(function(space1, space2) {
+ if (space1.label == space2.label) return 0;
+ return (space1.label < space2.label) ? -1 : 1;
+ });
+
+ if(spaces.length > 1){
+ sortArray(spaces, 'label', true);
+ sampleGroup._children = spaces;
+ }else{
+ sampleGroup._children = sampleGroup.samples;
+ }
+
+ if(isFirstSampleGroup){
+ openAllForNode(sampleGroup);
+ isFirstSampleGroup = false;
+ }
+ });
+
+ if (samples.length > 0){
+ root.children = sampleGroups;
+ }
+
+}
+
+function getAppHeight(){
+ return Math.max($(window).height() - 50, getVisibleLeafsCountForNode(root) * 20);
+}
+
+function getAppWidth(){
+ return $(window).width();
+}
+
+function closeAll(){
+ root.children.forEach(function(sampleGroup){
+ closeAllForNode(sampleGroup);
+ });
+
+ if(inspected.length > 0){
+ var inspectedCopy = inspected.slice(0);
+ inspectedCopy.forEach(function(elem){
+ if(elem.inspected){
+ toggle_inspected(elem);
+ }
+ });
+ }else{
+ updateDiagram(500);
+ }
+}
+
+function closeAllForNode(node){
+ closeChildren(node);
+ getChildren(node).forEach(function(child){
+ closeAllForNode(child);
+ });
+}
+
+function openAllForNode(node){
+ openChildren(node);
+ getChildren(node).forEach(function(child){
+ openAllForNode(child);
+ });
+}
+
+function getVisibleLeafsCountForNode(node){
+ if(node.children){
+ var count = 0;
+ node.children.forEach(function(child){
+ count += getVisibleLeafsCountForNode(child);
+ });
+ return count;
+ }else{
+ return 1;
+ }
+}
+
+function getVisibleLabelsMaxLength(node){
+ if(node.children){
+ var length = 0;
+ node.children.forEach(function(child){
+ var childLength = getVisibleLabelsMaxLength(child);
+ if(childLength > length){
+ length = childLength;
+ }
+ });
+ return length;
+ }else{
+ return node.label.length * 13;
+ }
+}
+
+function showSpaces()
+{
+ // Don't show anything yet, just initialize the visualization
+ createVis();
+}
+
+
+var didCreateVis = false;
+
+/**
+ * Create the DOM elements to store the visualization (tree + inspectors)
+ */
+function createVis()
+{
+ if (didCreateVis) return;
+
+ // Create a div to house the tree visualization and the inspectors
+ visgroup = d3.select("#main").append("div");
+
+ // An svg element for the tree visualization
+ vis = visgroup.append("svg:svg")
+ .attr("id","mainVis")
+ .append("svg:g")
+ .attr("transform", "translate(40, 0)");
+
+ var legend = vis.append("svg:g")
+ .attr("class","legend")
+ .attr("transform", "translate(-30, 0)");
+
+ var legendSeq = legend.append("svg:g").attr("class","sequenced").attr("transform","translate(0, 20)");
+ legendSeq.append("svg:circle").attr("r", 5.5);
+ legendSeq.append("svg:text").text("Sequenced").attr("dx", 10).attr("dy",4);
+
+ var legendNotSeq = legend.append("svg:g").attr("class","notsequenced").attr("transform","translate(0, 40)");
+ legendNotSeq.append("svg:circle").attr("r", 5.5);
+ legendNotSeq.append("svg:text").text("Not Sequenced").attr("dx", 10).attr("dy",4);
+
+ // An element for the inspectors.
+ inspectors = visgroup.append("span")
+ .attr("id","inspectorsContainer")
+ .style("width", + inspectorsWidth + "px")
+ .style("position", "relative")
+ .style("overflow", "auto")
+ .style("float", "right")
+ .style("top", "20px")
+ .style("display", "none");
+
+ didCreateVis = true;
+}
+
+
+/**
+ * Draw / update the tree
+ */
+function updateDiagram(duration)
+{
+ log('Updating diagram');
+
+ var inspectorsSize = inspected.length > 0 ? inspectorsWidth : 0;
+ var labelsSize = getVisibleLabelsMaxLength(root);
+
+ var treeWidth = Math.max(300, getAppWidth() - inspectorsSize - labelsSize);
+ var treeHeight = Math.max(100, getAppHeight());
+
+ var visWidth = treeWidth + labelsSize - 20;
+ var visHeight = treeHeight;
+
+ var mainWidth = visWidth + inspectorsSize;
+ var mainHeight = visHeight;
+
+ // Adjust a size of the vis
+ d3.select("#mainVis")
+ .attr("width", visWidth)
+ .attr("height", visHeight);
+
+ d3.select("#main")
+ .style("width", mainWidth)
+ .style("height", mainHeight);
+
+ // Adjust a size of the tree
+ tree = d3.layout.tree().size([treeHeight, treeWidth])
+
+ // Update the root and compute the new layout
+ var nodes = tree.nodes(root);
+
+ // Draw / update the links
+ var link = vis.selectAll("path.link").data(tree.links(nodes), function(d) { return d.code });
+
+ link.enter().append("svg:path")
+ .attr("class", "link")
+ .attr("d", function(d) {
+ var y0 = (null != d.source.y0) ? d.source.y0 : d.source.y;
+ var x0 = (null != d.source.x0) ? d.source.x0 : d.source.x;
+ var o = {x: x0, y: y0};
+ return diagonal({source: o, target: o});
+ })
+ .transition()
+ .duration(duration)
+ .attr("d", diagonal);
+
+ link.transition()
+ .duration(duration)
+ .attr("d", diagonal);
+
+ link.exit().transition()
+ .duration(duration)
+ .attr("d", function(d) {
+ var y0 = (null != d.source.y0) ? d.source.y0 : d.source.y;
+ var x0 = (null != d.source.x0) ? d.source.x0 : d.source.x;
+ var o = {x: x0, y: y0};
+ return diagonal({source: o, target: o});
+ })
+ .remove();
+
+ // Draw / update the nodes
+ var node = vis.selectAll("g.node").data(nodes, function(d) { return d.code });
+
+ var nodeEnter =
+ node.enter().append("svg:g")
+ .attr("class", classForNode)
+ .attr("transform", translateSrc)
+ .on("click", toggle_open);
+
+ nodeEnter.append("svg:circle")
+ .attr("r", 5.5);
+
+ nodeEnter.append("svg:text")
+ .attr("dx", function(d) { return hasChildren(d) ? -8 : 8 })
+ .attr("dy", 3)
+ .attr("text-anchor", function(d) { return getTextAnchorType(d) })
+ .text(function(d) { return d.label });
+
+ nodeEnter
+ .transition()
+ .duration(duration)
+ .attr("transform", translateDst);
+
+
+ // Transition nodes to their new position.
+ node.transition()
+ .duration(duration)
+ .attr("class", classForNode)
+ .attr("transform", translateDst);
+
+ // Move the text elements to the appropriate position
+ node.selectAll("text").transition()
+ .duration(duration)
+ .attr("dx", function(d) { return hasChildren(d) ? -8 : 8 })
+ .attr("text-anchor", function(d) { return getTextAnchorType(d) });
+
+ node.exit().transition()
+ .duration(duration)
+ .attr("transform", translateSrc)
+ .remove();
+}
+
+function classForNode(d) {
+ // Use whether the node has open children or not to compute the class
+ var cssClass = "node " + d.type;
+ if (d.inspected) cssClass = cssClass + " inspected";
+ if(d.hasFilesLoaded){
+ if (d.hasFiles) {
+ cssClass = cssClass + " sequenced";
+ } else {
+ cssClass = cssClass + " notsequenced";
+ }
+ }
+ return cssClass;
+}
+
+function translateSrc(d)
+{
+ var translate;
+ if (d.parent != undefined) {
+ var y0 = (null != d.parent.y0) ? d.parent.y0 : d.parent.y;
+ var x0 = (null != d.parent.x0) ? d.parent.x0 : d.parent.x;
+ translate = "translate(" + y0 + "," + x0 + ")";
+ } else {
+ translate = "translate(" + 0 + "," + 0 + ")";
+ }
+
+ return translate;
+}
+
+function translateDst(d)
+{
+ d.x0 = d.x;
+ d.y0 = d.y;
+ var translate = "translate(" + d.y + "," + d.x + ")";
+
+ return translate;
+}
+
+function getChildren(d){
+ if(d.children != null){
+ return d.children;
+ }else if(d._children != null){
+ return d._children;
+ }else{
+ return [];
+ }
+}
+
+function hasChildren(d)
+{
+ return d.children != null || d._children != null;
+}
+
+function hasChildrenOpen(d){
+ return d.children != null;
+}
+
+function hasChildrenClosed(d){
+ return d._children != null;
+}
+
+function closeChildren(d){
+ if(hasChildrenOpen(d)){
+ d._children = d.children;
+ d.children = null;
+ }
+}
+
+function openChildren(d){
+ if(hasChildrenClosed(d)){
+ d.children = d._children;
+ d._children = null;
+
+ var hasSampleChildren = d.children && d.children[0].type == 'SAMPLE';
+
+ if(hasSampleChildren && !d.hasFilesLoaded && !d.hasFilesLoading){
+ d.hasFilesLoading = true;
+
+ // Get datasets for each sequencing sample
+ var sampleDeferrer =
+ new actionDeferrer(
+ function() {
+ log("Loaded HAS_FILES for all samples");
+ d.hasFilesLoaded = true;
+ d.hasFilesLoading = false;
+ updateDiagram(500);
+ },
+ d.children.map(function(samp) { return samp.bis.code; }));
+
+ d.children.forEach(function(sample) {
+ loadHasFilesForSample(sample, function(){
+ sampleDeferrer.dependencyCompleted(sample.bis.code);
+ });
+ });
+ }
+ }
+}
+
+function loadHasFilesForSample(sample, callback){
+ dsu.retrieveDataSetsForSequencingSample(sample, function(data) {
+ var datasets = data.result;
+
+ log("Got " + (datasets ? datasets.length : 0) + " datasets for sample: " + sample.bis.code);
+
+ if (!datasets || datasets.length == 0){
+ sample.hasFiles = false;
+ sample.hasFilesLoaded = true;
+ callback();
+ }else{
+ var listFiles = function(dataset){
+ dsu.server.listFilesForDataSet(dataset.code, "/", true, function(data) {
+ var files = data.result;
+
+ log("Got " + (files ? files.length : 0) + " files for sample: " + sample.bis.code + " dataset: " + dataset.code);
+
+ if (!files || files.length == 0) {
+ if(datasets.length > 0){
+ log("Sample: " + sample.bis.code + " no files found yet - will try in the next dataset");
+ listFilesFunction(datasets.pop());
+ }else{
+ log("Sample: " + sample.bis.code + " HAS_NO_FILES");
+ sample.hasFiles = false;
+ sample.hasFilesLoaded = true;
+ callback();
+ }
+ }else{
+ log("Sample: " + sample.bis.code + " HAS_FILES");
+ sample.hasFiles = true;
+ sample.hasFilesLoaded = true;
+ callback();
+ }
+ });
+ };
+ listFiles(datasets.pop());
+ }
+ });
+}
+
+function loadFilesForSample(sample, callback){
+ dsu.retrieveDataSetsForSequencingSample(sample, function(data) {
+ var datasets = data.result;
+
+ log("Got " + (datasets ? datasets.length : 0) + " datasets for sample: " + sample.bis.code);
+
+ if (!datasets || datasets.length == 0){
+ sample.files = [];
+ sample.filesLoaded = true;
+ callback();
+ }else{
+ sample.datasets = data.result.map(function(bisds) { return {bis : bisds} });
+ sample.files = [];
+ sample.filesLoaded = false;
+
+ // Get all the files from the sequencing sample's datasets
+ var datasetDeferrer =
+ new actionDeferrer(
+ function() {
+ log("Loaded ALL datasets' files for sample: " + sample.bis.code);
+ sortArray(sample.files, 'label', true);
+ sample.filesLoaded = true;
+ callback();
+ },
+ sample.datasets.map(function(ds) { return ds.bis.code; }));
+
+ sample.datasets.forEach(function(ds) {
+ dsu.server.listFilesForDataSet(ds.bis.code, "/", true, function(data) {
+ log("Got " + (data.result ? data.result.length : 0) + " files for sample: " + sample.bis.code + " dataset: " + ds.bis.code);
+
+ if (!data.result || data.result.length == 0) {
+ datasetDeferrer.dependencyCompleted(ds.bis.code);
+ return;
+ }
+ data.result.forEach(function (file) {
+ file.dataset = ds;
+ file.label = file.pathInListing.split("/").pop();
+ });
+
+ data.result = data.result.filter(function(file) {
+ var regex= (/gz$|tsv$/);
+ return (regex.test(file.pathInListing) & !file.isDirectory); });
+ sample.files = sample.files.concat(data.result);
+ datasetDeferrer.dependencyCompleted(ds.bis.code);
+ })
+ });
+ }
+ });
+}
+
+function getTextAnchorType(d){
+ return d.type == 'SAMPLE' ? 'start' : 'end';
+}
+
+// Toggle children on click.
+function toggle_open(d) {
+ if (!hasChildren(d)) {
+ d.svgNode = this;
+ return toggle_inspected.call(this, d);
+ }
+
+ if (hasChildrenOpen(d)) {
+ closeChildren(d);
+ } else {
+ openChildren(d);
+ }
+ updateDiagram(500);
+}
+
+/**
+ * Draw / update node inspectors
+ */
+function updateInspectors(duration)
+{
+ // Draw / update the inspectors
+ var inspector = inspectors.selectAll("div.inspector").data(inspected, function (d) { return d.code });
+ var box = inspector.enter().append("div")
+ .attr("class", "inspector")
+ .text(function(d) { return d.label });
+
+ box.append("span")
+ .attr("class", "close")
+ .on("click", toggle_inspected)
+ .text("x");
+
+ var propsTable = box.append("table").attr("class", "properties");
+ propsTable.selectAll("tr").data(function(d) { return props_to_pairs(d.bis.properties) })
+ .enter()
+ .append("tr")
+ .selectAll("td").data(function(d) { return d }).enter()
+ .append("td")
+ .attr("class", "property")
+ .style("opacity", "0")
+ .text(function(d) { return d })
+ .transition()
+ .style("opacity", "1");
+
+ var downloadTable = inspector.selectAll("table.downloads").data(function(d) { return [d] });
+
+ downloadTable
+ .enter()
+ .append("table")
+ .attr("width", "100%")
+ .attr("class", "downloads");
+
+ // Add a caption, but make sure there is just one (this does not work with select())
+ downloadTable.selectAll("caption")
+ .data(downloadTableCaption)
+ .enter()
+ .append("caption").text(function(d) { return d; });
+
+ // We just want to see non-directories here
+ var downloadTableRow = downloadTable.selectAll("tr").data(filesForSequencingSample, function(d) { return d.pathInDataSet });
+ downloadTableRow
+ .enter()
+ .append("tr")
+ .append("td")
+ .style("text-align", "left")
+ .on("click", downloadTableFile)
+ .text(function(d) { return d.label; });
+ downloadTableRow
+ .exit()
+ .transition()
+ .duration(duration)
+ .style("opacity", "0")
+ .remove();
+
+ inspector.exit().transition()
+ .duration(duration)
+ .style("opacity", "0")
+ .remove();
+}
+
+// Toggle children on click.
+function toggle_inspected(d) {
+ var count = inspected.length;
+
+ if (d.inspected) {
+ var index = inspected.indexOf(d)
+ if (index > -1) inspected.splice(index, 1);
+ d.inspected = false;
+ d3.select(d.svgNode).attr("class", classForNode(d))
+ } else {
+ d.inspected = true;
+ inspected.push(d);
+ d3.select(d.svgNode).attr("class", classForNode(d))
+ if(!d.filesLoaded){
+ loadFilesForSample(d, function(){
+ updateInspectors(500);
+ });
+ }
+ }
+
+ if(inspected.length > 0){
+ $("#inspectorsContainer").show();
+ }else{
+ $("#inspectorsContainer").hide();
+ }
+
+ if(count == 0 && inspected.length > 0 || count > 0 && inspected.length == 0){
+ updateDiagram(500);
+ setTimeout(function(){
+ updateInspectors(500);
+ }, 500);
+ }else{
+ updateInspectors(500);
+ }
+}
+
+function sortArray(array, sortingFieldName, ascending){
+ array.sort(function(item1, item2){
+ var value1 = item1[sortingFieldName];
+ var value2 = item2[sortingFieldName];
+
+ if(value1){
+ value1 = new String(value1).toLowerCase();
+ }
+ if(value2){
+ value2 = new String(value2).toLowerCase();
+ }
+
+ if(ascending){
+ return (value1 >= value2) ? 1: -1;
+ }else{
+ return (value1 <= value2) ? 1: -1;
+ }
+ });
+}
+
+/**
+ * Convert properties to pairs
+ */
+function props_to_pairs(d)
+{
+ var pairs = [];
+ for (var prop in d) {
+ var pair = [prop, d[prop]];
+ pairs.push(pair);
+ }
+ pairs.sort(function(a, b) {
+ if (a[0] == b[0]) return 0;
+ // Sort in reverse lexicographical
+ return (a[0] < b[0]) ? -1 : 1;
+ });
+ return pairs;
+}
+
+
+function downloadTableCaption(d)
+{
+ if(d.filesLoaded){
+ if(d.files && d.files.length > 0){
+ return ["Files"]
+ }else{
+ return ["Not Yet Sequenced"];
+ }
+ }
+}
+
+function downloadTableFile(d)
+{
+ // If there is no dataset, this is just a marker for loading
+ if (!d.dataset) return;
+
+ var action = function(data) {
+ try {
+ document.location.href = data.result
+ } catch (err) {
+ // just ignore errors
+ }
+ };
+ dsu.server.getDownloadUrlForFileForDataSet(d.dataset.bis.code, d.pathInDataSet, action);
+}
+
+function filesForSequencingSample(d)
+{
+ return d.filesLoaded ? d.files : [{ label : "Loading..." }];
+}
+
+function enterApp(data)
+{
+ if(data.result == null){
+ alert("Login or password incorrect");
+ $("#loginname").focus();
+ $('#login-button').html('Login');
+ return;
+ }
+
+ $("#login-form-div").hide();
+ $("#main").show();
+
+ initTree();
+
+ $('#openbis-logo').height(30);
+ $('#openbis-logo').hide();
+
+}
+
+
+$(document).ready(function() {
+ //if ( $.browser.msie ) {
+ // alert("Currently no Internet Explorer is supported!");
+ //}
+ $('#main').hide()
+
+ $('#logout-button').click(function() {
+ dsu.server.logout(function(data) {$(location).attr('href',logouturl)});
+ });
+
+ dsu.server.ifRestoredSessionActive(function(data) { enterApp(data) });
+ $('#login-form').submit(function() {
+ $('#login-button').html('Logging in...');
+ dsu.server.login( $.trim($('#loginname').val()), $.trim($('#password').val()), function(data) { enterApp(data) })
+ });
+
+});
+
+// set the focus
+function onPageLoad(){
+ if(loginname.value.length==0) {
+ $("#loginname").focus();
+ }
+ else {
+ $("#login-button").focus();
+ }
+}
+
+function log(msg){
+ /*
+ if(console){
+ console.log(msg);
+ }
+ */
+}
+
+
+ </script>
+</head>
+<body onload="onPageLoad()">
+<img id="openbis-logo" src="images/openBIS_Logo.svg" alt="openBIS" style="position: absolute; left: 330px; top: 230px; height: 70px;"/>
+<link rel="shortcut icon" href="../images/favicon.ico" />
+<link rel="icon" type="image/png" href="../images/favicon.png" />
+
+<div id="login-form-div">
+ <h1>BSSE - Quantitative Genomics Facility</h1>
+ <form id="login-form" action="javascript:">
+ <div class="box greytext loginname">
+ <input value="Login Name" type="text" required="required" maxlength="40" size="40" onfocus="this.value=(this.value=='Login Name') ? '' : this.value;" onblur="this.value=(this.value=='') ? 'Login Name' : this.value;" id="loginname"> </input>
+ </div>
+ <div class="box greytext password">
+ <input value="Password" id="password" type="password" required="required" size="40" onfocus="this.value=(this.value=='Password') ? '' : this.value;" onblur="this.value=(this.value=='') ? 'Password' : this.value;" id="password"> </input>
+ </div>
+ <div class="loginbutton">
+ <button id="login-button">Login</button>
+ </div>
+ <br>
+ <a href="https://crowd-bsse.ethz.ch/crowd/console/forgottenlogindetails!default.action" id="resetpassword" class="greytext">Reset password</a>
+ </form>
+</div>
+
+<div id="main">
+ <div id="button-group">
+ <button id="logout-button">Logout</button>
+ <button id="close-all-button" onclick="closeAll();">Close All</button>
+ </div>
+</div>
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/tree.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/tree.css
new file mode 100644
index 00000000000..e54d6d1d5d3
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/html/tree.css
@@ -0,0 +1,138 @@
+.node circle {
+ fill: #fff;
+ stroke: #444444;
+ stroke-width: 1.5px;
+}
+
+.node {
+ font: 14px "Verdana", sans-serif;
+ z-index: 1;
+ cursor: pointer;
+ left: -15px;
+}
+
+.node:hover circle{
+ fill: #444444;
+}
+
+.node:hover{
+ font-weight: bold;
+}
+
+.link {
+ fill: none;
+ stroke: #ccc;
+ stroke-width: 1.5px;
+ z-index: -1;
+}
+
+.SAMPLE.inspected {
+ font-weight: bold
+}
+
+.SAMPLE.sequenced circle {
+ stroke: DarkGreen;
+}
+
+.SAMPLE.sequenced:hover circle {
+ fill: DarkGreen;
+}
+
+.SAMPLE.notsequenced circle {
+ stroke: DarkRed;
+}
+
+.SAMPLE.notsequenced:hover circle {
+ fill: DarkRed;
+}
+
+/* Inspector */
+
+div.inspector {
+ font: 14px "Verdana", sans-serif;
+ padding: 10px;
+ border: 1px solid gray;
+ margin: 10px 2px;
+ font-weight: bold;
+}
+
+.property {
+ font-size: 10px;
+}
+
+.properties {
+ width: 100%;
+}
+
+.properties tr:nth-child(odd) {
+ background-color:#eee;
+}
+
+.properties tr:nth-child(even) {
+ background-color:#fff;
+}
+
+.close {
+ float: right;
+}
+
+.close:hover {
+ opacity: 0.5;
+ color: #AAA;
+ cursor: pointer;
+}
+
+.downloads {
+ color: black;
+ background-color: #E3E3E3;
+}
+
+table.downloads {
+ font-family: "Trebuchet MS", sans-serif;
+ font-size: 10px;
+ table-layout: fixed;
+ border-collapse: collapse;
+ margin: 0px;
+ padding: 0px;
+}
+
+/*
+.downloads caption {
+ text-align: left;
+}
+*/
+
+.downloads tr {
+ padding: 0px;
+}
+
+.downloads td {
+ border: 2px solid #FFFFFF;
+ padding: 2px;
+}
+
+.downloads td:hover {
+ cursor: pointer;
+ text-decoration: underline
+}
+
+input:focus{
+background-color: white;
+}
+
+/* Legend */
+
+.legend .sequenced circle {
+ font: 14px "Verdana", sans-serif;
+ stroke-width: 1.5px;
+ fill: white;
+ stroke: DarkGreen;
+}
+
+.legend .notsequenced circle {
+ font: 14px "Verdana", sans-serif;
+ stroke-width: 1.5px;
+ fill: white;
+ stroke: DarkRed;
+}
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/plugin.properties
new file mode 100644
index 00000000000..cb40f34f644
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/downloader/plugin.properties
@@ -0,0 +1,3 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/html/index.html
new file mode 100644
index 00000000000..a8c4e6f935f
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/html/index.html
@@ -0,0 +1,179 @@
+<head>
+ <title>Quantitative Genomics Facility Invoice Generator</title>
+ <script type="text/javascript" src="/openbis/resources/js/d3.v3.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/spin.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-dsu.js"></script>
+ <link rel="stylesheet" href="//netdna.bootstrapcdn.com/bootstrap/3.0.0-rc1/css/bootstrap.min.css">
+ <!-- To speed development, cache the requests -->
+ <!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
+ <script>
+
+dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+var vis;
+var didCreateVis = false;
+
+$(document).ready(function() {
+});
+
+function createVis()
+{
+ if (didCreateVis) return;
+ vis = d3.select("#main").append("div").attr("id", "vis");
+ didCreateVis = true;
+}
+
+function displayReturnedTable(data)
+{
+ if (data.error) {
+ console.log(data.error);
+ vis.append("p").text("Could not retrieve data.");
+ return;
+ }
+
+ //console.log(data.result);
+ var dataToShow = data.result;
+
+ d3.select("#progress").remove()
+ d3.select("#button-group").remove()
+
+ vis.append("p").text("");
+ // Pick all div elements of the visualization
+ vis.selectAll("div")
+ .data(dataToShow.rows)
+ .enter()
+ .append("div")
+ .html(function(row) { return row[0].value })
+
+ var button = d3.select("body")
+ .append("div")
+
+ var invoices = [];
+ for (var i=0;i<data.result.rows.length;i++) {
+ var val = data.result.rows[i][1].value;
+ if (val) {
+ invoices.push(val)
+ }
+ }
+
+ //console.log(invoices)
+
+ button.selectAll("button")
+ .data(invoices)
+ .enter()
+ .append("div")
+ .append("button")
+ .attr("class", "btn btn-default btn-xs")
+ .attr("id", function(row) { return row; })
+ .attr("onclick", function(row) { return "callIngestionSetInvoice('" + row + "');" })
+ .text(function(row) { return "Set Invoice sent: " + row;});
+
+ /*.attr("id", function(row) { return row[1].value.split(' ')[3].split('.')[0] })
+ .attr("onclick", function(row) { return "callIngestionSetInvoice('" + row[1].value.split(' ')[3].split('.')[0] + "');" })
+ .text(function(row) { return row[1].value.split(' ')[3].split('.')[0];}); */
+}
+
+function hideButtons(data)
+{
+ var buttonId = data.result.rows[0][0].value;
+ d3.select("#setInvoice").remove()
+ d3.select("#main").append("div").attr("id", "Done").append("p").text("Done " + buttonId);
+ //console.log(buttonId);
+ d3.select("button#" + String(buttonId)).remove();
+}
+
+
+/**
+ * See ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.IQueryApiServer.createReportFromAggregationService(String, String, String, Map<String, Object>)
+ */
+openbis.prototype.createReportFromAggregationService = function(dataStoreCode, serviceKey, parameters, action) {
+ ajaxRequest({
+ url: this.queryServiceUrl,
+ data: { "method" : "createReportFromAggregationService",
+ params : [ this.sessionToken, dataStoreCode, serviceKey, parameters ] },
+ success: action
+ });
+}
+
+
+function spinner (target) {
+ var opts = {
+ lines: 13, // The number of lines to draw
+ length: 7, // The length of each line
+ width: 4, // The line thickness
+ radius: 10, // The radius of the inner circle
+ corners: 1, // Corner roundness (0..1)
+ rotate: 0, // The rotation offset
+ color: '#000', // #rgb or #rrggbb
+ speed: 1, // Rounds per second
+ trail: 60, // Afterglow percentage
+ shadow: false, // Whether to render a shadow
+ hwaccel: false, // Whether to use hardware acceleration
+ className: 'spinner', // The CSS class to assign to the spinner
+ zIndex: 2e9, // The z-index (defaults to 2000000000)
+ top: 250, // Top position relative to parent in px
+ left: 'auto' // Left position relative to parent in px
+ };
+ var spinner = new Spinner(opts).spin(target);
+}
+
+
+function callIngestionSetInvoice(piFile)
+{
+ var context = new openbisWebAppContext();
+ var sampleIdentifier = context.getEntityIdentifier()
+ var principalInvestigator = piFile.split(".")[0]
+ console.log('principalInvestigator:')
+ console.log(principalInvestigator)
+
+ dsu.server.useSession(context.getSessionId());
+ var parameters =
+ {
+ sampleId : sampleIdentifier,
+ pI : principalInvestigator
+ };
+
+ d3.select("#main").append("div").attr("id", "setInvoice").append("p").text("Setting Invoice Sent Property of " + piFile);
+ var target = document.getElementById('setInvoice');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "setInvoiceSent", parameters, hideButtons);
+}
+
+
+function callIngestionService()
+{
+ var context = new openbisWebAppContext();
+ var sampleIdentifier = context.getEntityIdentifier()
+ var mySendEmail = $('input[name=sendEmail]').is(':checked')
+
+ d3.select("#main").select("#progress").remove()
+ d3.select("#main").select("#vis").remove()
+ didCreateVis = false;
+ dsu.server.useSession(context.getSessionId());
+ createVis()
+ var parameters =
+ {
+ sampleId : sampleIdentifier,
+ sendEmail : mySendEmail
+ };
+
+ d3.select("#main").append("div").attr("id", "progress").append("p").text("Creating invoices...");
+ var target = document.getElementById('progress');
+ spinner(target)
+ dsu.server.createReportFromAggregationService("DSS1", "triggerInvoice", parameters, displayReturnedTable);
+}
+
+ </script>
+</head>
+<body>
+<div id="main">
+ <div id="checkbox-group">
+ <br>
+ </div>
+ <div id="button-group">
+ <button class="btn btn-default btn-xs" id="createInvoice-button" onclick="callIngestionService();">Create Invoices</button>
+ </div>
+</div>
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/plugin.properties
new file mode 100644
index 00000000000..e88648bf0ec
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/invoicing/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = sample-details-view
+sample-entity-types = ILLUMINA_FLOW_CELL
+label = Invoices
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/index.html
new file mode 100644
index 00000000000..54f4bca9ebd
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/index.html
@@ -0,0 +1,979 @@
+ <!DOCTYPE html>
+<html>
+ <head>
+ <title>Lane Statistics</title>
+ <script type="text/javascript" src="/openbis/resources/js/d3.v3.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/d3.layout.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/pie.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-dsu.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/FileSaver.js"></script>
+ <link rel="stylesheet" href="//maxcdn.bootstrapcdn.com/bootstrap/3.2.0/css/bootstrap.min.css">
+ <link rel="stylesheet" type="text/css" href="style.css" />
+ </head>
+ <body>
+ <script>
+
+ dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+ var webAppContext = new openbisWebAppContext();
+ dsu.server.useSession(webAppContext.getSessionId());
+
+ var div = d3.select("body").append("div")
+ .attr("class", "tooltip")
+ .style("opacity", 0);
+
+ // used for sorting by of the final array of objects
+ function compare(a,b) {
+ if (a.externalSampleName < b.externalSampleName)
+ return -1;
+ if (a.externalSampleName > b.externalSampleName)
+ return 1;
+ return 0;
+ }
+
+
+ /*
+ * Natural Sort algorithm for Javascript - Version 0.6 - Released under MIT license
+ * Author: Jim Palmer (based on chunking idea from Dave Koelle)
+ * Contributors: Mike Grier (mgrier.com), Clint Priest, Kyle Adams, guillermo
+ */
+ function naturalSort (a, b) {
+ var re = /(^-?[0-9]+(\.?[0-9]*)[df]?e?[0-9]?$|^0x[0-9a-f]+$|[0-9]+)/gi,
+ sre = /(^[ ]*|[ ]*$)/g,
+ dre = /(^([\w ]+,?[\w ]+)?[\w ]+,?[\w ]+\d+:\d+(:\d+)?[\w ]?|^\d{1,4}[\/\-]\d{1,4}[\/\-]\d{1,4}|^\w+, \w+ \d+, \d{4})/,
+ hre = /^0x[0-9a-f]+$/i,
+ ore = /^0/,
+ // convert all to strings and trim()
+ x = a.externalSampleName.toString().replace(sre, '') || '',
+ y = b.externalSampleName.toString().replace(sre, '') || '',
+ // chunk/tokenize
+ xN = x.replace(re, '\0$1\0').replace(/\0$/,'').replace(/^\0/,'').split('\0'),
+ yN = y.replace(re, '\0$1\0').replace(/\0$/,'').replace(/^\0/,'').split('\0'),
+ // numeric, hex or date detection
+ xD = parseInt(x.match(hre)) || (xN.length != 1 && x.match(dre) && Date.parse(x)),
+ yD = parseInt(y.match(hre)) || xD && y.match(dre) && Date.parse(y) || null;
+ // first try and sort Hex codes or Dates
+ if (yD)
+ if ( xD < yD ) return -1;
+ else if ( xD > yD ) return 1;
+ // natural sorting through split numeric strings and default strings
+ for(var cLoc=0, numS=Math.max(xN.length, yN.length); cLoc < numS; cLoc++) {
+ // find floats not starting with '0', string or 0 if not defined (Clint Priest)
+ oFxNcL = !(xN[cLoc] || '').match(ore) && parseFloat(xN[cLoc]) || xN[cLoc] || 0;
+ oFyNcL = !(yN[cLoc] || '').match(ore) && parseFloat(yN[cLoc]) || yN[cLoc] || 0;
+ // handle numeric vs string comparison - number < string - (Kyle Adams)
+ if (isNaN(oFxNcL) !== isNaN(oFyNcL)) return (isNaN(oFxNcL)) ? 1 : -1;
+ // rely on string comparison if different types - i.e. '02' < 2 != '02' < '2'
+ else if (typeof oFxNcL !== typeof oFyNcL) {
+ oFxNcL += '';
+ oFyNcL += '';
+ }
+ if (oFxNcL < oFyNcL) return -1;
+ if (oFxNcL > oFyNcL) return 1;
+ }
+ return 0;
+ }
+
+
+ loadData()
+
+function loadData () {
+
+ sampleToParentsMap = {};
+ dataSetToParentMap = {};
+ dataSetMap = {};
+ parentToDataSets = {};
+ realValueMap = {};
+
+ dsu.retrieveSampleParents(webAppContext.getEntityPermId(), function(parentResponse){
+ // console.log("Got parents: " + parentResponse.result.length);
+ var parentPermIds = [];
+
+ parentResponse.result.forEach(function(parent){
+ parentPermIds.push(parent.permId);
+ });
+
+ dsu.retrieveSampleChildren(parentPermIds, function(childrenResponse){
+ // console.log("Got children: " + childrenResponse.result.length);
+
+ var childrenPermIds = [];
+
+ childrenResponse.result.forEach(function(child){
+ childrenPermIds.push(child.permId);
+ sampleToParentsMap[child.identifier] = child.parents;
+ });
+
+ dsu.retrieveDataSetsForSampleWithPermIds(childrenPermIds, function(dataSetResponse){
+ // console.log("Got datasets: " + dataSetResponse.result.length);
+
+ dataSetResponse.result.forEach(function(dataSet){
+ var index1 = dataSet.properties['BARCODE'];
+ var index2 = dataSet.properties['INDEX2'];
+ var parents = sampleToParentsMap[dataSet.sampleIdentifierOrNull];
+
+ dataSetMap[dataSet.code] = dataSet
+
+ parents.forEach(function(parent){
+ var parentIndex1 = parent.properties['BARCODE'];
+ var parentIndex2 = parent.properties['INDEX2'];
+
+ if(index1 == parentIndex1 && (!index2 || !parentIndex2 || index2 == parentIndex2)){
+ dataSetToParentMap[dataSet.code] = parent;
+ if (!(parent.code in parentToDataSets)) {
+ parentToDataSets[parent.code] = [dataSet]
+ }
+ else {
+ // key already exists
+ parentToDataSets[parent.code].push(dataSet)
+ }
+ }
+ // non-multiplexed run, so no index set
+ if (parentIndex1 == undefined && parentIndex2 == undefined) {
+ dataSetToParentMap[dataSet.code] = parent;
+ parentToDataSets[parent.code] = [dataSet]
+ }
+ });
+ });
+ // console.log("SampleToParentsMap: ");
+ // console.log(sampleToParentsMap);
+ // console.log("DataSetToParentMap: ");
+ // console.log(dataSetToParentMap);
+ // console.log("DataSets: ");
+ // console.log(dataSetMap)
+ // console.log("parentToDataSets: ");
+ // console.log(parentToDataSets)
+
+ $.each( parentToDataSets, function( key, value ) {
+ var cumSumYieldMbases = 0;
+ var cumSumPfReadsSum = 0;
+ // console.log( key );
+ $.each (value, function (index, dataset) {
+
+ cumSumYieldMbases += parseInt(dataset.properties['YIELD_MBASES']);
+ cumSumPfReadsSum += parseInt(dataset.properties['PF_READS_SUM']);
+ });
+ realValueMap[key] = [cumSumYieldMbases, cumSumPfReadsSum]
+ });
+ // console.log(realValueMap)
+
+
+ statisticsArray = [];
+ targetedArray = [];
+ noIndex = false;
+
+ var dataSetProperties;
+ dsu.retrieveDataSetsForSample(webAppContext.getEntityIdentifier(), getProperties);
+
+ function getProperties(dataSetProperties) {
+
+ dsu.retrieveSampleParents(webAppContext.getEntityPermId(), getParentProperties);
+
+ function getParentProperties (sampleProperties) {
+ for (var i = 0; i < sampleProperties.result.length; i++) {
+ targetedArray.push ({
+ 'targeted_yield_in_gigabases_pf' : sampleProperties.result[i].properties.TARGETED_YIELD_IN_GIGABASES_PF,
+ 'targeted_read_count_in_million_pf' : sampleProperties.result[i].properties.TARGETED_READ_COUNT_IN_MILLION_PF,
+ 'externalSampleName' : sampleProperties.result[i].properties.EXTERNAL_SAMPLE_NAME,
+ 'parentSampleCode' : sampleProperties.result[i].code
+ });
+ }
+ console.log("targetedArray:");
+ console.log(targetedArray);
+ console.log(dataSetProperties)
+ console.log("realValueMap:")
+ console.log(realValueMap)
+
+ for (var i = 0; i < dataSetProperties.result.length; i++) {
+ for (var j = 0; j < targetedArray.length; j++) {
+ if (targetedArray[j]['externalSampleName'] == dataSetProperties.result[i].properties.EXTERNAL_SAMPLE_NAME){
+
+ statisticsArray.push({
+ 'qgfName' : targetedArray[j]['parentSampleCode'],
+ 'externalSampleName' : dataSetProperties.result[i].properties.EXTERNAL_SAMPLE_NAME,
+ 'index1': dataSetProperties.result[i].properties.BARCODE,
+ 'index2': dataSetProperties.result[i].properties.INDEX2,
+ 'percFilteringPass' : parseFloat(dataSetProperties.result[i].properties.PERCENTAGE_PASSED_FILTERING),
+ 'rawReadsSum' : dataSetProperties.result[i].properties.RAW_READS_SUM,
+ 'pfReadsSum' : dataSetProperties.result[i].properties.PF_READS_SUM,
+ 'rawYieldMbases' : dataSetProperties.result[i].properties.RAW_YIELD_MBASES,
+ 'yieldMbases' : dataSetProperties.result[i].properties.YIELD_MBASES,
+ 'percRawClustersPerLane': parseFloat(dataSetProperties.result[i].properties.PERCENTAGE_RAW_CLUSTERS_PER_LANE),
+ 'pfMeanQualityScore' : parseFloat(dataSetProperties.result[i].properties.PFMEANQUALITYSCORE),
+ 'pfYieldq30Percentage' : parseFloat(dataSetProperties.result[i].properties.PFYIELDQ30PERCENTAGE),
+ 'real_yield_in_gigabases_pf' : realValueMap[targetedArray[j]['parentSampleCode']][0],
+ 'real_read_count_in_million_pf' : realValueMap[targetedArray[j]['parentSampleCode']][1],
+ 'targeted_yield_in_gigabases_pf' : parseFloat(targetedArray[j]['targeted_yield_in_gigabases_pf']),
+ 'targeted_read_count_in_million_pf' : targetedArray[j]['targeted_read_count_in_million_pf']
+ });
+ }
+ else if (dataSetProperties.result[i].properties.BARCODE == 'NOINDEX' && noIndex == false) {
+ noIndex = true;
+ statisticsArray.push({
+ 'qgfName' : 'NA',
+ 'externalSampleName' : "NOINDEX",
+ 'index1': dataSetProperties.result[i].properties.BARCODE,
+ 'index2': dataSetProperties.result[i].properties.INDEX2,
+ 'percFilteringPass' : parseFloat(dataSetProperties.result[i].properties.PERCENTAGE_PASSED_FILTERING),
+ 'rawReadsSum' : dataSetProperties.result[i].properties.RAW_READS_SUM,
+ 'pfReadsSum' : dataSetProperties.result[i].properties.PF_READS_SUM,
+ 'rawYieldMbases' : dataSetProperties.result[i].properties.RAW_YIELD_MBASES,
+ 'yieldMbases' : dataSetProperties.result[i].properties.YIELD_MBASES,
+ 'percRawClustersPerLane': parseFloat(dataSetProperties.result[i].properties.PERCENTAGE_RAW_CLUSTERS_PER_LANE),
+ 'pfMeanQualityScore' : parseFloat(dataSetProperties.result[i].properties.PFMEANQUALITYSCORE),
+ 'pfYieldq30Percentage' : parseFloat(dataSetProperties.result[i].properties.PFYIELDQ30PERCENTAGE),
+ 'real_yield_in_gigabases_pf' : 0,
+ 'real_read_count_in_million_pf' : 0,
+ 'targeted_yield_in_gigabases_pf' : parseFloat(0.0),
+ 'targeted_read_count_in_million_pf' : 0
+ });
+ } // else if
+ } // for
+ } // for
+
+ // console.log("statisticsArray")
+ // console.log(statisticsArray)
+
+ statisticsArray.sort(naturalSort);
+ var sums = calculateSum(statisticsArray, true)
+ var sumsWithNOINDEX = calculateSum(statisticsArray, false)
+
+ if (! isNaN(statisticsArray[0].percFilteringPass)) {
+ plotLaneTable(sumsWithNOINDEX, false)
+ //placeholder();
+ // TODO: removed for now, as there is a bug
+ //plotLaneTable(sums, true)
+ placeholder();
+ plotTable (statisticsArray);
+ downloadButton ("tableStats");
+ placeholder();
+ plotPercFilteringPass (statisticsArray);
+ downloadButton ("filteredChart");
+ plotReadsSum (statisticsArray, sums);
+ downloadButton ("unfilteredReads");
+ plotPFReads (statisticsArray, sums);
+ downloadButton ("PFReads");
+ plotPercRawClustersPerLane (statisticsArray);
+ downloadButton ("percRawClusters");
+
+ $("#save_as" + "tableStats").click(function() { submit_download_form("html", "tableStats"); });
+ $("#save_as" + "filteredChart").click(function() { submit_download_form("svg", "filteredChart"); });
+ $("#save_as" + "unfilteredReads").click(function() { submit_download_form("svg", "unfilteredReads"); });
+ $("#save_as" + "PFReads").click(function() { submit_download_form("svg", "PFReads"); });
+ $("#save_as" + "percRawClusters").click(function() { submit_download_form("svg", "percRawClusters"); });
+ }
+
+ else {
+ d3.select("body").append("text").text("No data available!")
+ }
+ } // function getParentProperties (sampleProperties) {
+ } // function getProperties(dataSetProperties)
+ });
+ });
+ });
+
+}
+
+colors = ["#FED976", "#FEB24C", "#FD8D3C", "#FC4E2A", "#E31A1C", "#800026", "#610B5E", "#4C0B5F",
+ "#0B0B61", "#0B4C5F", "#0B5F48","#0B5F1E", "#4C5F0B", "#5F480B", "#5F1E0B", "#5F0B22",
+ ]
+var formatThousands = d3.format(",");
+
+function isNumber(n) {
+ return !isNaN(parseFloat(n)) && isFinite(n);
+}
+
+function plotLaneTable (sums, withNOINDEX) {
+
+ //d3.select("body").append("text")
+ // .text("Lane Based Summary Table")
+ // .attr("class", "h5");
+
+ d3.select("body").append("text")
+ .text(function (){if (withNOINDEX) {return "Lane without reads which failed demultiplexing (NOINDEX)";} return " Total Lane";})
+ .attr("class", "h6");
+
+
+ var laneTableStats = d3.select("body")
+ .append("table")
+ .attr("id", "tableLaneStats")
+ .attr("class", "tableStats")
+ ;
+
+ header = {"Average Passed Filtering (PF)":1, "Sum Raw Reads":1, "Sum PF Reads":1, "Sum Raw Bases":1, "Sum PF Bases":1, "Average Raw Clusters in % per Index":1, "Average PF Phred Score":1, "Average > 30 Phred Score":1}
+
+ // create the table header
+ var thead = laneTableStats.selectAll("th")
+ .data(d3.keys(header))
+ .enter().append("th")
+ .text(function(d){return d})
+ ;
+
+ // fill the table
+ // create rows
+ var tr = laneTableStats.selectAll("tr")
+ .data(sums).enter().append("tr")
+
+ // cells
+ var td = tr.selectAll("td")
+ .data(function(d){return d3.values(d)})
+ .enter().append("td")
+ .text(function(d) {if (isNumber(d)) {return formatThousands(d)}; return d;})
+ .style("text-align", function(d){if (isNumber(d)) {return "right"} return "left"})
+ ;
+}
+
+function plotTable (statisticsArray) {
+
+ /*
+ d3.select("body").append("text")
+ .text("Index Based Summary Table")
+ .attr("class", "h4");
+ */
+
+ var tableStats = d3.select("body")
+ .append("table")
+ .attr("id", "tableStats")
+ .attr("class", "tableStats")
+ ;
+
+ var header={ "QGF Name" : "Internal Name of QGF",
+ "External Name": "Name given by the customer",
+ "Index1": "First Index",
+ "Index2": "Second Index",
+ "Passed Filtering(PF) in %": "Reads which passed the Illumina Filter",
+ "Raw Reads": "Number of all Reads",
+ "PF Reads": "Number of Reads which passed the Illumina Filter",
+ "Raw Bases": "Number of all Bases",
+ "PF Bases": "Number of all Bases which passed the Illumina Filter",
+ "% in Lane": "Percentage of this Index within the Lane",
+ "Mean Phred Score": "Mean Phred Score (0-40)",
+ "> 30 Phred Score in %": "How many Bases are above the Phred Score 30(0.001)?",
+ "Real yield" : "Real yield of samples over multiple lanes",
+ "Real Read" : "Real Read count in millions of samples over multiple lanes",
+ "Targeted yield" : "Targeted yield in Gigabases",
+ "Targeted Read": "Targeted Read Count in million (PF)"
+ }
+
+
+ // create the table header
+ var thead = tableStats.selectAll("th")
+ //.data(d3.keys(statisticsArray[0])) // got replaced with more readable names
+ .data(d3.keys(header))
+ .enter().append("th")
+ .text(function(d){return d})
+ .data(d3.values(header))
+ .on("mouseover", function(d) {
+ div.transition()
+ .duration(200)
+ .style("opacity", .9);
+ div.style("width", "140px")
+ div.html(d)
+ .style("left", (d3.event.pageX) + "px")
+ .style("top", (d3.event.pageY - 42) + "px");
+ })
+ .on("mouseout", function(d) {
+ div.transition()
+ .duration(500)
+ .style("opacity", 0);
+ })
+ ;
+
+ // fill the table
+ // create rows
+ var tr = tableStats.selectAll("tr")
+ .data(statisticsArray).enter().append("tr")
+
+ // cells
+ var td = tr.selectAll("td")
+ .data(function(d){return d3.values(d)})
+ .enter().append("td")
+ .text(function(d) {if (isNumber(d)) {return formatThousands(d)}; return d;})
+ //.on("mouseover", function(){d3.select(this).style("background-color", "aliceblue")})
+ //.on("mouseout", function(){d3.select(this).style("background-color", "white")})
+ .style("text-align", function(d){if (isNumber(d)) {return "right"} return "left"})
+ .attr('class', function(d,i){ return "col_" + i; })
+ /*.style("background", function(d,i){ if (d3.values(statisticsArray)[i] != undefined) {
+ console.log(d3.values(statisticsArray)[i]);
+ // if (parseInt(d3.values(statisticsArray)[i].pfReadsSum) >= 1000000 )
+ if (parseInt(d3.values(statisticsArray)[i].pfReadsSum) >= 1000000 * parseInt(d3.values(statisticsArray)[i].targeted_read_count_in_million_pf))
+ {return "lightgreen";} return "red"
+ ;}
+ });
+ */
+
+ realValue = 0;
+ realValueBases = 0;
+ var td = d3.selectAll("#tableStats tr").selectAll("td")
+ td.style("color", function(d, i) {
+ if (i==13) {realValue = d;}
+ if (i==12) {realValueBases = d;}
+ if (d != undefined) {
+ if (i==15) {
+ // console.log(parseInt(d) * 1000000 + ">= " + realValue);
+ if ( parseInt(d) * 1000000 >= realValue) {return "red"; }
+ else { return "green";}
+ }
+ if (i==14) {
+ // console.log(realValueBases + " >= " + parseFloat(d) * 1000000000);
+ if ( realValueBases >= parseFloat(d) * 1000000000 ) {return "green"; }
+ else { return "red";}
+ }
+ }
+ });
+
+ //console.log(statisticsArray)
+}
+
+
+function placeholder() {
+
+var space = d3.select("body")
+ .append("svg")
+ .attr("id", "placeholder")
+ .attr("width", 1000)
+ .attr("height", 30)
+ ;
+}
+
+function plotPercFilteringPass (statisticsArray) {
+
+ if (statisticsArray.length > 60) {var svgWidth = 7000;}
+ else if (statisticsArray.length > 10) {var svgWidth = 5000;}
+ else {var svgWidth = 3000;}
+
+ svgWidth = statisticsArray.length * 100
+ if (svgWidth < 200) {svgWidth = 400;}
+
+
+ var barPadding = 1;
+ var valuePadding = 0.01;
+ var agenda = [100,90,80,70,60,50,40,30,20,10,0]
+ var agendaWidth = 100
+ var AgendaWidthOffset = 30
+
+ var margin = {top: 20, right: 20, bottom: 40, left: 40},
+ svgWidth = svgWidth - margin.left - margin.right,
+ svgHeight = 250 - margin.top - margin.bottom;
+
+ // var svgFilteredChartAgenda = d3.select("body")
+ // .append("svg")
+ // .attr("id", "chartAgenda")
+ // .attr("width", agendaWidth )
+ // .attr("height", svgHeight + margin.top + margin.bottom)
+ // ;
+
+ // var filteredChartAgenda = svgFilteredChartAgenda.selectAll("percFilteringPassChartAgenda")
+ // .data(agenda)
+ // .enter()
+ // .append("rect")
+ // .attr("rx", 3)
+ // .attr("y", function(d, i) { return i * (svgHeight / agenda.length) ;})
+ // .attr("x", function(d) { return 0; })
+ // .attr("width", function (d) { return agendaWidth - AgendaWidthOffset })
+ // .attr("height", function (d) { return svgHeight / agenda.length - barPadding;})
+ // .attr("fill", function (d) { return "hsla("+ Math.round(d)*1.2 +", 40%, 30%, 1)"});
+
+ // svgFilteredChartAgenda.selectAll("agendaText")
+ // .data(agenda)
+ // .enter()
+ // .append("text")
+ // .text(function(d) { return d + " %"; })
+ // .attr("fill", function(d) { return "white";})
+ // .attr("x", function(d) { return (agendaWidth - AgendaWidthOffset)/2 ; })
+ // .attr("y", function(d, i) { return i * (svgHeight / agenda.length) + (svgHeight / agenda.length - barPadding) / 2 + 3;})
+ // .attr("font-family", "sans-serif")
+ // .attr("font-size", "10px")
+ // .attr("text-anchor", "middle")
+ // ;
+
+ var svgFilteredChart = d3.select("body")
+ .append("svg")
+ .attr("id", "filteredChart")
+ .attr("width", svgWidth + margin.left + margin.right)
+ .attr("height", svgHeight + margin.top + margin.bottom)
+ .append("g")
+ .attr("transform", "translate(" + margin.left + "," + margin.top + ")")
+ ;
+
+ svgFilteredChart.append('text')
+ .text("% passes Illumina Filtering (PF)")
+ .attr("transform", "translate(" + (svgWidth/2) + "," + (svgHeight - 200) + ")")
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "14px")
+ .attr("text-anchor", "middle")
+ ;
+
+ var x = d3.scale.ordinal()
+ .rangeRoundBands([0, svgWidth], valuePadding);
+ //.rangeRoundBands([0, svgWidth], .001);
+
+ var y = d3.scale.linear()
+ .range([svgHeight, 0]);
+
+ var xAxis = d3.svg.axis()
+ .scale(x)
+ .orient("bottom")
+ //.tickPadding(25);
+
+ var yAxis = d3.svg.axis()
+ .scale(y)
+ .orient("left");
+ //.tickFormat(formatPercent);
+
+ //x.domain(statisticsArray.map(function(d) { return d.externalSampleName+": "+d.index1;} ));
+ x.domain(statisticsArray.map(function(d) { if (d.externalSampleName == undefined ) {return d.index1}; return d.externalSampleName; }));
+ //y.domain([0, d3.max(statisticsArray, function(d) { return d.percFilteringPass; })]);
+ y.domain([0, 100]);
+
+ svgFilteredChart.append("g")
+ .attr("class", "axis")
+ .attr("transform", "translate(0," + svgHeight + ")")
+ .call(xAxis);
+
+ var filteredChart = svgFilteredChart.selectAll("percFilteringPassChart")
+ .data(statisticsArray)
+ .enter()
+ .append("rect")
+ .attr("rx", 3)
+ .attr ("x", function (d) {return x(d.externalSampleName+d.index1);})
+ .attr ("width", x.rangeBand())
+ .attr ("y", function (d,i) {return y(d.percFilteringPass);})
+ .attr("height", function (d,i) {return svgHeight - y(d.percFilteringPass);})
+ .attr("fill", function (d) { return "hsla("+ Math.round(d.percFilteringPass)*1.2 +", 40%, 30%, 1)"});
+
+ svgFilteredChart.selectAll(".axis text") // select all the text elements for the xaxis
+ .data(statisticsArray)
+ .attr ("y", function(d, i) {if (i%2 == 0) {return 8} return 22}); // if index is even then put the text up, else further down
+
+ svgFilteredChart.append("g")
+ .attr("class", "y axis")
+ .call(yAxis)
+ .append("text")
+ .attr("transform", "rotate(0)")
+ .attr("x", 16)
+ .attr("dy", ".71em")
+ .style("text-anchor", "end")
+ .text("%");
+
+
+ svgFilteredChart.selectAll("svgFilteredChartText")
+ .data(statisticsArray)
+ .enter()
+ .append("text")
+ .text(function(d) { return d.percFilteringPass + " %"; })
+ .attr("x", function(d, i) { return i * 1/(1+valuePadding)*(svgWidth / statisticsArray.length) + ((svgWidth /statisticsArray.length ) /2) -15; })
+ .attr("y", function(d) {
+ if (d.percFilteringPass < 40) { return svgHeight - d.percFilteringPass - margin.top - margin.bottom; }
+ return (svgHeight - d.percFilteringPass - margin.bottom) ;
+ })
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "12px")
+ .attr("fill", function(d) { if (d.percFilteringPass < 60) { return "black";}
+ return "white";})
+}
+
+
+function plotReadsSum (statisticsArray, sums){
+
+ svgWidth = statisticsArray.length * 100
+ if (svgWidth < 200) {svgWidth = 300;}
+
+ var formatThousands = d3.format(",");
+ var colorRange = d3.scale.ordinal()
+ .range(colors);
+
+
+
+ var margin = {top: 50, right: 20, bottom: 30, left: 40},
+ svgWidth = svgWidth - margin.left - margin.right,
+ svgHeight = 250 - margin.top - margin.bottom;
+
+ var barPadding = 1;
+ var valuePadding = 0.01;
+
+ var svgReadsSum = d3.select("body")
+ .append("svg")
+ .attr("id", "unfilteredReads")
+ .attr("width", svgWidth + margin.left + margin.right)
+ .attr("height", svgHeight + margin.top + margin.bottom)
+ .append("g")
+ .attr("transform", "translate(" + margin.left + "," + margin.top + ")")
+ ;
+
+ var rawReadsSum = 0;
+ rawReadsSum = sums[0].rawReadsSum
+
+ svgReadsSum.append('text')
+ .text("Number of raw Reads: " + formatThousands(rawReadsSum))
+ .attr("transform", "translate(" + (svgWidth/2) + "," + (svgHeight - 200) + ")")
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "14px")
+ .attr("text-anchor", "middle")
+ ;
+
+
+ var x = d3.scale.ordinal()
+ .rangeRoundBands([0, svgWidth], valuePadding);
+
+ var y = d3.scale.linear()
+ .range([svgHeight, 0]);
+
+ var xAxis = d3.svg.axis()
+ .scale(x)
+ .orient("bottom");
+
+ var yAxis = d3.svg.axis()
+ .scale(y)
+ .orient("left");
+
+ x.domain(statisticsArray.map(function(d) { if (d.externalSampleName == undefined ) {return d.index1}; return d.externalSampleName; }));
+ y.domain([0, d3.max(statisticsArray, function(d) { return d.rawReadsSum - 20; })]);
+
+ svgReadsSum.append("g")
+ .attr("class", "axis")
+ .attr("transform", "translate(0," + svgHeight + ")")
+ .call(xAxis);
+
+ // alternate between minimal padding and high padding of the tick names
+ svgReadsSum.selectAll(".axis text") // select all the text elements for the xaxis
+ .data(statisticsArray)
+ .attr ("y", function(d, i) {if (i%2 == 0) {return 8} return 22}); // if index is even the put the text up, else further down
+
+
+ var ReadsSum = svgReadsSum.selectAll("ReadsSum")
+ .data(statisticsArray)
+ .enter()
+ .append("rect")
+ .attr("rx", 3)
+ .attr ("x", function (d) {return x(d.externalSampleName+d.index1);})
+ .attr ("width", x.rangeBand())
+ .attr ("y", function (d,i) {return y(d.rawReadsSum) ;})
+ .attr("height", function (d,i) {return svgHeight - y(d.rawReadsSum);})
+ // .attr("fill", function (d) { return "hsla("+ Math.round(d.rawReadsSum)*1.2 +", 40%, 30%, 1)"});
+ .attr("fill", function(d) { return colorRange(d.rawReadsSum); })
+ ;
+
+ svgReadsSum.selectAll("svgReadsSumText")
+ .data(statisticsArray)
+ .enter()
+ .append("text")
+ .text(function(d) { return formatThousands(d.rawReadsSum); })
+ //.attr("x", function(d, i) { return i * 1/(1+valuePadding)*(svgWidth / statisticsArray.length) + ((svgWidth /statisticsArray.length ) /2) -10; })
+ .attr ("x", function (d) {return x(d.externalSampleName+d.index1) + 20;})
+ // .attr("y", function(d) {
+ // return (svgHeight - margin.top - margin.bottom + 20) ;
+ // })
+ .attr("y", function(d) {return y(d.rawReadsSum) - 8;})
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "10px")
+ .attr("fill", function(d) { if (d.rawReadsSum < 30000000) { return "black";}
+ return "black";})
+
+ ;
+
+}
+
+
+
+function plotPFReads (statisticsArray, sums){
+
+ svgWidth = statisticsArray.length * 100
+ if (svgWidth < 200) {svgWidth = 300;}
+
+ var formatThousands = d3.format(",");
+ var colorRange = d3.scale.ordinal()
+ .range(colors);
+
+
+
+ var margin = {top: 50, right: 20, bottom: 30, left: 40},
+ svgWidth = svgWidth - margin.left - margin.right,
+ svgHeight = 250 - margin.top - margin.bottom;
+
+ var barPadding = 1;
+ var valuePadding = 0.01;
+
+ var svgPFReads = d3.select("body")
+ .append("svg")
+ .attr("id", "PFReads")
+ .attr("width", svgWidth + margin.left + margin.right)
+ .attr("height", svgHeight + margin.top + margin.bottom)
+ .append("g")
+ .attr("transform", "translate(" + margin.left + "," + margin.top + ")")
+ ;
+
+ var pfReadsSum = 0;
+ pfReadsSum = sums[0].pfReadsSum
+
+ svgPFReads.append('text')
+ .text("Number of PF Reads: " + formatThousands(pfReadsSum))
+ .attr("transform", "translate(" + (svgWidth/2) + "," + (svgHeight - 200) + ")")
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "14px")
+ .attr("text-anchor", "middle")
+ ;
+
+
+ var x = d3.scale.ordinal()
+ .rangeRoundBands([0, svgWidth], valuePadding);
+
+ var y = d3.scale.linear()
+ .range([svgHeight, 0]);
+
+ var xAxis = d3.svg.axis()
+ .scale(x)
+ .orient("bottom");
+
+ var yAxis = d3.svg.axis()
+ .scale(y)
+ .orient("left");
+
+ x.domain(statisticsArray.map(function(d) { if (d.externalSampleName == undefined ) {return d.index1}; return d.externalSampleName; }));
+ y.domain([0, d3.max(statisticsArray, function(d) { return d.pfReadsSum - 20; })]);
+
+ svgPFReads.append("g")
+ .attr("class", "axis")
+ .attr("transform", "translate(0," + svgHeight + ")")
+ .call(xAxis);
+
+ // alternate between minimal padding and high padding of the tick names
+ svgPFReads.selectAll(".axis text") // select all the text elements for the xaxis
+ .data(statisticsArray)
+ .attr ("y", function(d, i) {if (i%2 == 0) {return 8} return 22}); // if index is even the put the text up, else further down
+
+
+ var ReadsSum = svgPFReads.selectAll("ReadsSum")
+ .data(statisticsArray)
+ .enter()
+ .append("rect")
+ .attr("rx", 3)
+ .attr ("x", function (d) {return x(d.externalSampleName+d.index1);})
+ .attr ("width", x.rangeBand())
+ .attr ("y", function (d,i) {return y(d.pfReadsSum) ;})
+ .attr("height", function (d,i) {return svgHeight - y(d.pfReadsSum);})
+ // .attr("fill", function (d) { return "hsla("+ Math.round(d.pfReadsSum)*1.2 +", 40%, 30%, 1)"});
+ .attr("fill", function(d) { return colorRange(d.pfReadsSum); })
+ ;
+
+ svgPFReads.selectAll("svgPFReadsText")
+ .data(statisticsArray)
+ .enter()
+ .append("text")
+ .text(function(d) { return formatThousands(d.pfReadsSum); })
+ //.attr("x", function(d, i) { return i * 1/(1+valuePadding)*(svgWidth / statisticsArray.length) + ((svgWidth /statisticsArray.length ) /2) -10; })
+ .attr ("x", function (d) {return x(d.externalSampleName+d.index1) + 20;})
+ // .attr("y", function(d) {
+ // return (svgHeight - margin.top - margin.bottom + 20) ;
+ // })
+ .attr("y", function(d) {return y(d.pfReadsSum) - 8;})
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "10px")
+ .attr("fill", function(d) { if (d.pfReadsSum < 30000000) { return "black";}
+ return "black";})
+
+ ;
+
+}
+
+
+function roundFloat(myFloat) {
+ return Number(myFloat).toFixed(2);
+}
+
+
+function calculateSum(statisticsArray, withNOINDEX) {
+
+ var sums = []
+ var averagePercFilteringPass = 0;
+ var sumRawReads = 0;
+ var sumPfReads = 0;
+ var sumRawYieldMbases = 0;
+ var sumYieldMbases = 0;
+ var averagePercRawClustersPerLane = 0;
+ var averagePfMeanQualityScore = 0;
+ var averagePfYieldq30Percentage = 0;
+
+ for (var i = 0; i < statisticsArray.length; i++) {
+ // do not calculate with the NOINDEX reads
+ if ((typeof (statisticsArray[i].externalSampleName) == 'undefined') && withNOINDEX) {
+ continue;
+ } else {
+
+ averagePercFilteringPass = averagePercFilteringPass + parseFloat(statisticsArray[i].percFilteringPass);
+ sumRawReads = sumRawReads + parseInt(statisticsArray[i].rawReadsSum);
+ sumPfReads = sumPfReads + parseInt(statisticsArray[i].pfReadsSum);
+ sumRawYieldMbases = sumRawYieldMbases + parseInt(statisticsArray[i].rawYieldMbases);
+ sumYieldMbases = sumYieldMbases + parseInt(statisticsArray[i].yieldMbases);
+ averagePercRawClustersPerLane = averagePercRawClustersPerLane + parseInt(statisticsArray[i].percRawClustersPerLane);
+ averagePfMeanQualityScore = averagePfMeanQualityScore + parseInt(statisticsArray[i].pfMeanQualityScore);
+ averagePfYieldq30Percentage = averagePfYieldq30Percentage + parseInt(statisticsArray[i].pfYieldq30Percentage);
+ }
+ }
+ if (withNOINDEX) {penalty = -1} else {penalty = 0}
+
+ // added the Math.max function to make sure that there is no division by zero,
+ // can happen when a single sample is on a lane (no multiplexing)
+ averagePercFilteringPass = roundFloat(averagePercFilteringPass / Math.max((statisticsArray.length + penalty),1));
+ averagePercRawClustersPerLane = roundFloat(averagePercRawClustersPerLane /Math.max((statisticsArray.length + penalty),1));
+ averagePfMeanQualityScore = roundFloat(averagePfMeanQualityScore / Math.max((statisticsArray.length + penalty),1));
+ averagePfYieldq30Percentage = roundFloat(averagePfYieldq30Percentage / Math.max((statisticsArray.length + penalty),1));
+
+ sums.push({
+ 'averagePercFilteringPass' : averagePercFilteringPass,
+ 'rawReadsSum' : sumRawReads,
+ 'pfReadsSum' : sumPfReads,
+ 'rawYieldMbases' : sumRawYieldMbases,
+ 'yieldMbases' : sumYieldMbases,
+ 'percRawClustersPerLane': averagePercRawClustersPerLane,
+ 'pfMeanQualityScore' : averagePfMeanQualityScore,
+ 'pfYieldq30Percentage' : averagePfYieldq30Percentage
+ });
+
+ //console.log(sums);
+ return sums;
+
+}
+
+
+function plotPercRawClustersPerLane (percRawClustersPerLaneArray) {
+
+ var colorRange = d3.scale.ordinal()
+ .range(colors)
+
+ var margin = {top: 60, right: 20, bottom: 40, left: 40},
+ width = 500 - margin.left - margin.right,
+ height = 500 - margin.top - margin.bottom;
+
+ var radius = Math.min(width, height) / 2;
+
+ var arc = d3.svg.arc()
+ .outerRadius(radius - 50)
+ .innerRadius(radius - 90);
+
+ var pie = d3.layout.pie()
+ .sort(null)
+ .value(function(d) { return d.percRawClustersPerLane; });
+
+ var svgPercRawClustersPerLaneChart = d3.select("body").append("svg")
+ .attr("id", "percRawClusters")
+ .attr("width", width)
+ .attr("height", height)
+ .append("g")
+ .attr("transform", "translate(" + width / 2 + "," + height / 2+ ")");
+
+ percRawClustersPerLaneArray.forEach(function(d) {
+ d.percRawClustersPerLane = +d.percRawClustersPerLane;
+ });
+
+ var g = svgPercRawClustersPerLaneChart.selectAll(".arc")
+ .data(pie(percRawClustersPerLaneArray))
+ .enter().append("g")
+ .attr("class", "arc");
+
+ g.append("path")
+ .attr("d", arc)
+ .style("fill", function(d) { return colorRange(d.data.index1); });
+
+ g.append("text")
+ .attr("transform", function(d) { return "translate(" + arc.centroid(d) + ")"; })
+ .attr("dy", ".35em")
+ .style("text-anchor", "middle")
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "10px")
+ .attr("text-anchor", "middle")
+ .text(function (d) {
+ var perc = d.data.percRawClustersPerLane + " %";
+ if (d.data.externalSampleName == undefined || d.data.externalSampleName.length > 10) {return d.data.index1 + " " + perc}
+ return d.data.externalSampleName + " " + perc })
+ .on("mouseover", function(d) {
+ div.transition()
+ .duration(200)
+ .style("opacity", .9);
+ div.style("width", Math.max(d.data.externalSampleName.length, d.data.index1.length) * 8 + "px")
+ div.html(d.data.externalSampleName + "<br/>" + d.data.index1 + "<br/>" + d.data.percRawClustersPerLane + " %")
+ .style("left", (d3.event.pageX) + "px")
+ .style("top", (d3.event.pageY - 42) + "px");
+ })
+ .on("mouseout", function(d) {
+ div.transition()
+ .duration(500)
+ .style("opacity", 0);
+ });
+
+
+ svgPercRawClustersPerLaneChart.append('text')
+ .text("% in Lane")
+ .attr("fill", "black")
+ .attr("transform", "translate(" + "0" + "," + (height -220) + ")")
+ .attr("font-family", "sans-serif")
+ .attr("font-size", "14px")
+ .attr("text-anchor", "middle")
+ ;
+
+}
+
+
+function downloadButton (buttonName) {
+
+
+ var div = d3.select("body").append("button")
+ .attr("class", "btn-xs")
+ .attr("type", "submit")
+ .attr("id", "save_as" + buttonName)
+ .attr("value", "")
+ .text("Save")
+ ;
+}
+
+ function submit_download_form(output_format, svgName)
+ {
+ var rawSampleName = webAppContext.getEntityIdentifier()
+ var split = rawSampleName.split(":")
+ var fc = split[0].split("/")[2]
+ var lane = split[1]
+
+ // Get the d3js SVG element
+ var tmp = document.getElementById(svgName);
+
+ if (output_format == "svg") {
+
+ // Extract the data as SVG text string
+ var svg_xml = "<svg xmlns=\"http://www.w3.org/2000/svg\" xmlns:xlink=\"http://www.w3.org/1999/xlink\"> <style>" +
+ ".axis path,"+
+ ".axis line {"+
+ " fill: none;"+
+ " stroke: #000;"+
+ " shape-rendering: crispEdges;"+
+ "}"+
+
+ ".axis text {"+
+ " font-family: sans-serif;"+
+ " font-size: 10px;"+
+ "}"+
+ "</style>" + (new XMLSerializer).serializeToString(tmp) + "</svg>";
+
+ var blob = new Blob([svg_xml], {type: "image/svg+xml;charset=utf-8"});
+ }
+ if (output_format == "html") {
+ var html = "<html> <head> <title></title> <style type=\"text/css\">" +
+ "table.tableStats { font-family: sans-serif; font-size: 14px; border-collapse:collapse; }" +
+ ".tableStats th { padding:6px 10px; color:#444; font-weight:bold; text-shadow:1px 1px 1px #fff; border-bottom:2px solid #444; }" +
+ ".tableStats tr:nth-child(even) { background: WhiteSmoke; }" +
+ ".tableStats td { padding:0px 10px 10px 10px; }" +
+ "</style> </head> <body>" +
+ (new XMLSerializer).serializeToString(tmp) +
+ "</body> </html>"
+ var blob = new Blob([html], {type: "image/html;charset=utf-8"});
+ }
+ if (output_format == "png") {
+ console.log("png")
+ }
+
+ saveAs(blob, fc + "_Lane_" + lane + "_" + svgName + "." + output_format);
+
+ }
+
+ </script>
+ </body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/style.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/style.css
new file mode 100644
index 00000000000..a2f1db8832b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/html/style.css
@@ -0,0 +1,52 @@
+ .axis path,
+ .axis line {
+ fill: none;
+ stroke: #000;
+ shape-rendering: crispEdges;
+ }
+
+ .axis text {
+ font-family: sans-serif;
+ font-size: 10px;
+ }
+
+ table.tableStats {
+ width:100%;
+ font-family: sans-serif;
+ font-size: 12px;
+ border-collapse:collapse;
+ }
+
+ .tableStats th {
+ padding: 0.5rem;
+ text-align: right;
+ color:#444;
+ font-weight:bold;
+ /*text-shadow:1px 1px 1px #fff;*/
+ border-bottom:1px solid #444;
+ background: #D9D9D9;
+ }
+
+ .tableStats tr:nth-child(even) {
+ background: WhiteSmoke;
+ }
+ .tableStats td {
+ /*border: 1px solid #999;*/
+ padding-left: 0.5rem;
+ padding-right: 0.5rem;
+ /*padding:0px 10px 10px 10px;*/
+
+ }
+
+ div.tooltip {
+ position: absolute;
+ text-align: center;
+ width: 100px;
+ height: 42px;
+ padding: 2px;
+ font: 12px sans-serif;
+ background: LightSalmon;
+ border: 0px;
+ border-radius: 8px;
+ pointer-events: none;
+ }
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/plugin.properties
new file mode 100644
index 00000000000..0508c9d2785
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/laneStatistics/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = sample-details-view
+sample-entity-types = ILLUMINA_FLOW_LANE
+label = Lane Statistics
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/body-style.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/body-style.css
new file mode 100644
index 00000000000..629f097de8b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/body-style.css
@@ -0,0 +1,4 @@
+body { font: 14px "Trebuchet MS", sans-serif; }
+
+h1 { font: 16px; }
+h3 { font: 12px; }
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/button.css b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/button.css
new file mode 100644
index 00000000000..6b1dccf1a62
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/button.css
@@ -0,0 +1,54 @@
+button {
+ font: 14px "Trebuchet MS";
+ background-color: #222;
+ background-image: -moz-linear-gradient(top, rgba(255,255,255,.25), rgba(255,255,255,.11));
+ background-image: -webkit-gradient(linear,left top,left bottom,color-stop(0, rgba(255,255,255,.25)),color-stop(1, rgba(255,255,255,.11)));
+ background-image: -webkit-linear-gradient(rgba(255,255,255,.25), rgba(255,255,255,.11));
+ color: #fff;
+ text-rendering: optimizeLegibility;
+ text-shadow: 0 -1px 1px #222;
+ padding: 3px 5px 3px 5px;
+ border: 0;
+ border-radius: 0;
+ border-bottom: 1px solid #222;
+ margin: 0;
+ -moz-box-shadow: 0 1px 3px #999;
+ -webkit-box-shadow: 0 1px 3px #999;
+ box-shadow: 0 1px 3px #999;
+}
+
+button.first {
+ border-top-left-radius: 5px;
+ border-bottom-left-radius: 5px;
+}
+
+button.last {
+ border-top-right-radius: 5px;
+ border-bottom-right-radius: 5px;
+}
+
+button.active {
+ background-color: rgb(65,102,133);
+}
+
+button:hover {
+ background-color: grey;
+ cursor: pointer;
+}
+
+input {
+ font: 14px "Trebuchet MS";
+ background-image: -moz-linear-gradient(top, rgba(255,255,255,.25), rgba(255,255,255,.11));
+ background-image: -webkit-gradient(linear,left top,left bottom,color-stop(0, rgba(255,255,255,.25)),color-stop(1, rgba(255,255,255,.11)));
+ background-image: -webkit-linear-gradient(rgba(255,255,255,.5), rgba(255,255,255,.1));
+ color: #000;
+ text-rendering: optimizeLegibility;
+ padding: 3px 5px 3px 5px;
+ border: 0;
+ border-radius: 0;
+ margin: 0;
+ -moz-box-shadow: 0 1px 3px #999;
+ -webkit-box-shadow: 0 1px 3px #999;
+ box-shadow: 0 1px 3px #999;
+}
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/index.html b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/index.html
new file mode 100644
index 00000000000..535234ff9a1
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/html/index.html
@@ -0,0 +1,154 @@
+<head>
+ <title>Quantitative Genomics Facility Sample Sheet Generator</title>
+ <link type="text/css" rel="stylesheet" href="button.css" />
+ <link type="text/css" rel="stylesheet" href="body-style.css" />
+ <script type="text/javascript" src="/openbis/resources/js/d3.v3.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/jquery.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/spin.min.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-dsu.js"></script>
+ <script type="text/javascript" src="/openbis/resources/js/openbis-action-deferrer.js"></script>
+ <!-- To speed development, cache the requests -->
+ <!-- <script type="text/javascript" src="openbis-request-cache.js"></script> -->
+ <script>
+
+dsu = new openbis_dsu('/openbis/openbis', '/datastore_server');
+var context = new openbisWebAppContext();
+dsu.server.useSession(context.getSessionId());
+var vis;
+var didCreateVis = false;
+
+$(document).ready(function() {
+});
+
+function createVis()
+{
+ if (didCreateVis) return;
+ vis = d3.select("#main").append("div").attr("id", "vis");
+ didCreateVis = true;
+}
+
+function displayReturnedTable(data)
+{
+ if (data.error) {
+ console.log(data.error);
+ vis.append("p").text("Could not retrieve data.");
+ return;
+ }
+
+ // This will show the object in the log -- helpful for debugging
+ // console.log(data.result);
+ var dataToShow = data.result;
+
+ vis.append("p").text("");
+ // Pick all div elements of the visualization
+ vis.selectAll("div").data(dataToShow.rows)
+ // Code under enter is run if there is no HTML element for a data element
+ .enter()
+ .append("div")
+ .text(function(row) { return row[0].value })
+ d3.select("#progress").remove()
+ d3.select("#runType").remove()
+ //console.log(data);
+}
+
+
+function spinner (target) {
+ var opts = {
+ lines: 13, // The number of lines to draw
+ length: 7, // The length of each line
+ width: 4, // The line thickness
+ radius: 10, // The radius of the inner circle
+ corners: 1, // Corner roundness (0..1)
+ rotate: 0, // The rotation offset
+ color: '#000', // #rgb or #rrggbb
+ speed: 1, // Rounds per second
+ trail: 60, // Afterglow percentage
+ shadow: false, // Whether to render a shadow
+ hwaccel: false, // Whether to use hardware acceleration
+ className: 'spinner', // The CSS class to assign to the spinner
+ zIndex: 2e9, // The z-index (defaults to 2000000000)
+ top: 'auto', // Top position relative to parent in px
+ left: 'auto' // Left position relative to parent in px
+ };
+ var spinner = new Spinner(opts).spin(target);
+}
+
+function loadProperties () {
+
+ var sampleCodes = [];
+ var miSeqRun = false;
+
+ sampleCodes.push(context.getEntityIdentifier());
+
+ var deferrer = new openbisActionDeferrer(function(){
+ d3.select("#main").select("#progress").remove();
+ d3.select("#main").select("#vis").remove();
+ if (miSeqRun == true) {
+ d3.select("#main").append("div").attr("id", "runType").append("p").text("Detected MiSeq Run.");
+ }
+ else {
+ d3.select("#main").append("div").attr("id", "runType").append("p").text("Detected HiSeq Run.");
+ }
+ d3.select("#main").append("div").attr("id", "progress").append("p").text("Creating sample sheet...");
+ var target = document.getElementById('progress');
+ spinner(target);
+ }, sampleCodes);
+
+ sampleCodes.forEach(function(sampleCode){
+ dsu.retrieveSample(sampleCode, function(response) {
+ getProperties(response);
+ //console.log("got response " + sampleCode);
+ deferrer.dependencyCompleted(sampleCode);
+ callAggregationService(miSeqRun)
+ });
+ });
+
+ function getProperties(response) {
+ flowcellProperties = response.result[0].properties;
+ numberOfLanes = (flowcellProperties.LANECOUNT);
+ sequencer = (flowcellProperties.SEQUENCER);
+ if (sequencer == "M01761") {
+ miSeqRun = true;
+ }
+ else {
+ miSeqRun = false;
+ }
+ }
+}
+
+
+function callAggregationService(miSeqRun)
+{
+ var sampleCode = context.getEntityIdentifier();
+ var mySendEmail = $('input[name=sendEmail]').is(':checked');
+
+ didCreateVis = false;
+ createVis()
+
+ var parameters =
+ {
+ sampleId : sampleCode,
+ sendEmail : mySendEmail,
+ miSeqRun : miSeqRun
+ };
+ //console.log(parameters)
+
+ dsu.server.createReportFromAggregationService("DSS1", "triggerCreateSampleSheet", parameters, displayReturnedTable);
+}
+
+ </script>
+</head>
+<body>
+<div id="main">
+ <div id="checkbox-group">
+ <input type="checkbox" name="sendEmail" value="mail"> Send Sample Sheet By Mail? <br>
+ <!--<input type="checkbox" name="singlelane" value="singlelane"> Single Lane Mode? <br> -->
+ <br>
+ </div>
+ <div id="button-group">
+ <button id="createSampleSheet-button" onclick="loadProperties();">Create Sample Sheet</button>
+ </div>
+</div>
+</body>
+</html>
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/plugin.properties
new file mode 100644
index 00000000000..a8230cd14ee
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/as/webapps/sampleSheet/plugin.properties
@@ -0,0 +1,6 @@
+# The properties file for an example webapps plugin
+# This file has no properties defined because none need to be defined.
+webapp-folder = html
+openbisui-contexts = sample-details-view
+sample-entity-types = ILLUMINA_FLOW_CELL
+label = Sample Sheet Creator
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py
new file mode 100644
index 00000000000..7a6945be12e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/create-flowcell-hiseq.py
@@ -0,0 +1,221 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Parses the two Illumina provided files 'runParameters.xml' and 'RunInfo.xml'
+and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties
+from those two XML files. Additionally the number of lanes are read out and
+are created as contained samples of type 'ILLUMINA_FLOW_LANE'.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX
+expected incoming Name for GAII runs: 110812_6353WAAXX
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+import re
+from time import *
+from datetime import *
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+IS_HISEQ_RUN=False
+RUNPARAMETERS = 'runParameters.xml'
+RUNINFO = 'RunInfo.xml'
+FLOWCELL_SPACE='BSSE_FLOWCELLS'
+FLOWCELL_PROJECT='FLOWCELLS'
+EXPERIMENT_TYPE_CODE='HT_SEQUENCING'
+
+FLOWCELL_PROJECT_ID = "/%(FLOWCELL_SPACE)s/%(FLOWCELL_PROJECT)s/" % vars()
+
+# Mapping between XML file naming and used in here
+RUNPARAMETERS_XML = {'FLOWCELL':'Flowcell', 'RTAVERSION':'RTAVersion',
+ 'CONTROLLANE':'ControlLane', 'SBS':'Sbs', 'INDEX':'Index',
+ 'CYCLES_REQUESTED_BY_CUSTOMER':'Read1', 'PE':'Pe', 'RUN_MODE': 'RunMode'}
+RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount',
+ 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'}
+
+class parseXmlFile:
+
+ def __init__(self, xmlFile):
+ self.xmlFile = xmlFile
+ self.tree = etree.parse(self.xmlFile)
+ self.root = self.tree.getroot()
+
+ def getXmlElement (self, elementName):
+ '''
+ Returns the text value of a given XML element
+ '''
+ for e in self.root.getchildren():
+ element = e.find(elementName)
+ if element is None:
+ return 'None'
+ else:
+ return element.text
+
+ def getAllchildren (self, elementName):
+ '''
+ finds all children of a given XML Element and returns them as list
+ '''
+ for e in self.root.getchildren():
+ # the '//' means look recursively for all children not only direct ones
+ childList = self.tree.findall('//' + elementName)
+ return childList
+
+# -----------------------------------------------------------------------------
+
+def create_openbis_timestamp ():
+ '''
+ Create an openBIS conform timestamp
+ '''
+ tz=localtime()[3]-gmtime()[3]
+ d=datetime.now()
+ return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00")
+
+# -----------------------------------------------------------------------------
+
+def createOpenbisTimeStamp(file):
+ '''
+ Creates a openBIS compatible time stamp of a file time stamp
+ '''
+ mtime = os.path.getmtime(file)
+ lt = localtime(mtime)
+ tz = localtime().tm_hour - gmtime().tm_hour
+ return (strftime("%Y-%m-%d %H:%M:%S GMT" + "%+.2d" % tz + ":00", lt))
+
+# -----------------------------------------------------------------------------
+
+def registerFlowLane(transaction, a_lane, name, newFlowCell):
+ '''
+ Registers a new Flow lane
+ '''
+ newFlowLane = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + name + ':' + str(a_lane), "ILLUMINA_FLOW_LANE")
+ newFlowLane.setContainer(newFlowCell)
+ newFlowLane.setPropertyValue('CONCENTRATION_FLOWLANE', str(0))
+
+# -----------------------------------------------------------------------------
+
+def addVocabularyTerm(transaction, vocabularyName, vocabularyCode):
+ modifiableVocabulary = transaction.getVocabularyForUpdate(vocabularyName)
+ if not (modifiableVocabulary.containsTerm(vocabularyCode)):
+ ordinals = []
+ terms = modifiableVocabulary.getTerms()
+ for term in terms:
+ ordinals.append(term.getOrdinal())
+
+ newOrdinal = max(ordinals)+1;
+ newTerm = transaction.createNewVocabularyTerm();
+ newTerm.setCode(vocabularyCode)
+ newTerm.setOrdinal(newOrdinal)
+ modifiableVocabulary.addTerm(newTerm)
+
+# -----------------------------------------------------------------------------
+
+def sanitizeString(myString):
+ return re.sub('[^A-Za-z0-9]+', '_', myString)
+
+# -----------------------------------------------------------------------------
+
+def setFcProperty(searchId, dict, newFlowCell, runInfo):
+ children = runInfo.getAllchildren(searchId)
+ for element in (dict):
+ if (element <> '') and (dict[element] <> ''):
+ newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]])
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+ incoming = transaction.getIncoming()
+ incomingPath = incoming.getAbsolutePath()
+ space = None
+
+ # Get the incoming name
+ name = incoming.getName()
+ split=name.split("_")
+
+ # Parse the RunInfo.xml file
+ runInfo = parseXmlFile(incomingPath + '/' + RUNINFO)
+ maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']]
+
+ # Search for the sample and check if there is already sample with this name
+ search_service = transaction.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name));
+ foundSamples = search_service.searchForSamples(sc)
+ if foundSamples.size() > 0:
+ print('Already found a Flow Cell with the following name: '+ name + ". Will re-set the properties...")
+ newFlowCell = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier())
+ else:
+ # Create a new Flow Cell and set the experiment
+ print ("Creating new Flow Cell " + name)
+
+ newFlowCell = transaction.createNewSample('/' + FLOWCELL_SPACE + '/' + name, "ILLUMINA_FLOW_CELL")
+ exp = transaction.getExperiment(FLOWCELL_PROJECT_ID + datetime.now().strftime("%Y.%m"))
+ if exp == None:
+ exp = transaction.createNewExperiment(FLOWCELL_PROJECT_ID + datetime.now().strftime("%Y.%m"),
+ EXPERIMENT_TYPE_CODE)
+ newFlowCell.setExperiment(exp)
+ [registerFlowLane(transaction, lane, name, newFlowCell) for lane in range(1,int(maxLanes)+1)]
+
+ run = runInfo.getAllchildren('Run')[0].attrib
+ if (run['Id'] != name):
+ raise NameError('Flowcell names do not match between directory name '+ name +
+ ' and ' + RUNINFO + 'property file: ' + run['Id'])
+
+ # The HiSeq is providing more infos, which we will parse here:
+ runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS)
+ addVocabularyTerm(transaction, "PIPELINE_VERSION", runParameters.getXmlElement(RUNPARAMETERS_XML['RTAVERSION']))
+
+ newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", runParameters.getXmlElement(RUNPARAMETERS_XML['RTAVERSION']))
+ newFlowCell.setPropertyValue("FLOWCELLTYPE", runParameters.getXmlElement(RUNPARAMETERS_XML['FLOWCELL']))
+ newFlowCell.setPropertyValue("CONTROL_LANE", runParameters.getXmlElement(RUNPARAMETERS_XML['CONTROLLANE']))
+ newFlowCell.setPropertyValue("SBS_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['SBS']))
+
+ runMode = sanitizeString(runParameters.getXmlElement(RUNPARAMETERS_XML['RUN_MODE']))
+ addVocabularyTerm(transaction, "RUN_MODE_VOCABULARY", runMode)
+
+ newFlowCell.setPropertyValue("RUN_MODE", runMode)
+ newFlowCell.setPropertyValue("RUN_NAME_FOLDER", name)
+
+ numberOfCycles = runParameters.getAllchildren('Read1')[0].text
+ cyclesVocabularyName = "CYCLES"
+ addVocabularyTerm(transaction, cyclesVocabularyName, numberOfCycles)
+ newFlowCell.setPropertyValue("CYCLES_REQUESTED_BY_CUSTOMER", numberOfCycles)
+
+ read2 = runParameters.getAllchildren('Read2')
+ if (str(read2[0].text) == '0'):
+ newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ")
+ else:
+ newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END")
+ newFlowCell.setPropertyValue("PAIRED_END_KIT", runParameters.getXmlElement(RUNPARAMETERS_XML['PE']))
+
+ indexRead1 = runParameters.getAllchildren('IndexRead1')
+ newFlowCell.setPropertyValue("INDEXREAD", indexRead1[0].text)
+
+ indexRead2 = runParameters.getAllchildren('IndexRead2')
+ newFlowCell.setPropertyValue("INDEXREAD2", indexRead2[0].text)
+
+ setFcProperty('FlowcellLayout', RUNINFO_XML, newFlowCell, runInfo)
+
+ sequencer = runInfo.getAllchildren('Instrument')
+ newFlowCell.setPropertyValue("SEQUENCER", sequencer[0].text)
+ newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", createOpenbisTimeStamp(incomingPath + '/' + RUNPARAMETERS))
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties
new file mode 100644
index 00000000000..5c56666b206
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-hiseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for creating a flow cell based on runParameters.xml and RunInfo.xml created by an
+# Illumina HiSeq
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/create-flowcell-hiseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = create-flowcell-hiseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py
new file mode 100755
index 00000000000..cfde834eb21
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/create-flow-cell-miseq.py
@@ -0,0 +1,251 @@
+'''
+@copyright:
+2012, 2013 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Parses the two Illumina provided files 'RunParameters.xml' and 'RunInfo.xml'
+and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties
+from those two XML files. Additionally the number of lanes are read out and
+are created as contained samples of type 'ILLUMINA_FLOW_LANE'.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for MiSeq runs: 120726_M00721_0011_A000000000-A1FVF
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+from time import *
+from datetime import *
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.common.mail import EMailAddress
+
+#RUNPARAMETERS = 'RunParameters.xml'
+RUNPARAMETERS = 'runParameters.xml'
+RUNINFO = 'RunInfo.xml'
+FLOWCELL_SPACE='/BSSE_FLOWCELLS/'
+FLOWCELL_PROJECT='FLOWCELLS/'
+EXPERIMENT_TYPE_CODE='HT_SEQUENCING'
+
+# Mapping between XML file naming and openBIS properties
+
+RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount',
+ 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'}
+
+#------------------------------------------------------------------------------
+
+class parseXmlFile:
+
+ def __init__(self, xmlFile):
+ self.xmlFile = xmlFile
+ self.tree = etree.parse(self.xmlFile)
+ self.root = self.tree.getroot()
+
+ def getXmlElement (self, elementName):
+ '''
+ Returns the text value of a given XML element
+ '''
+ for e in self.root.getchildren():
+ element = e.find(elementName)
+ if element is None:
+ return 'None'
+ else:
+ return element.text
+
+ def getAllchildren (self, elementName):
+ '''
+ finds all children of a given XML Element and returns them as list
+ '''
+ for e in self.root.getchildren():
+ # the '//' means look recursively for all children not only direct ones
+ childList = self.tree.findall('//' + elementName)
+ return childList
+
+# -----------------------------------------------------------------------------
+
+def create_openbis_timestamp ():
+ '''
+ Create an openBIS conform timestamp
+ '''
+ tz=localtime()[3]-gmtime()[3]
+ d=datetime.now()
+ return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00")
+
+# -----------------------------------------------------------------------------
+
+def createOpenbisTimeStamp(file):
+ '''
+ Creates a openBIS compatible time stamp of a file time stamp
+ '''
+ mtime = os.path.getmtime(file)
+ lt = localtime(mtime)
+ tz = localtime().tm_hour - gmtime().tm_hour
+ return (strftime("%Y-%m-%d %H:%M:%S GMT" + "%+.2d" % tz + ":00", lt))
+
+# -----------------------------------------------------------------------------
+
+def registerFlowLane(a_lane, transaction, name, newFlowCell):
+ '''
+ Registers a new Flow lane
+ '''
+ newFlowLane = transaction.createNewSample(FLOWCELL_SPACE + name + ':' + str(a_lane), "ILLUMINA_FLOW_LANE")
+ newFlowLane.setPropertyValue('CONCENTRATION_FLOWLANE', str(0))
+ newFlowLane.setContainer(newFlowCell)
+
+# -----------------------------------------------------------------------------
+
+def addVocabularyTerm(transaction, vocabularyName, vocabularyCode):
+ modifiableVocabulary = transaction.getVocabularyForUpdate(vocabularyName)
+ if not (modifiableVocabulary.containsTerm(vocabularyCode)):
+ ordinals = []
+ terms = modifiableVocabulary.getTerms()
+ for term in terms:
+ ordinals.append(term.getOrdinal())
+
+ newOrdinal = max(ordinals)+1;
+
+ newTerm = transaction.createNewVocabularyTerm();
+ newTerm.setCode(vocabularyCode)
+ newTerm.setOrdinal(newOrdinal)
+ modifiableVocabulary.addTerm(newTerm)
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+
+ incoming = transaction.getIncoming()
+ incomingPath = incoming.getAbsolutePath()
+
+ name = incoming.getName()
+ # ['120726', 'M00721', '0011', 'A000000000-A1FVF']
+ runDate, MiseqID, runningNumber, trayAndFcId = name.split("_")
+ tray = trayAndFcId[0]
+ fcId = trayAndFcId[1:]
+
+ # -----------------------------------------------------------------------------
+
+ # Search for the sample and check if there is already sample with this name
+ search_service = transaction.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name));
+ foundSamples = search_service.searchForSamples(sc)
+ if foundSamples.size() > 0:
+ raise NameError('Already found a Flow Cell with the following name: '+ name)
+
+ # Parse the RunInfo.xml file
+ runInfo = parseXmlFile(incomingPath + '/' + RUNINFO)
+
+ # Create a new Flow Cell and set the experiment
+ newFlowCell = transaction.createNewSample(FLOWCELL_SPACE + name, "ILLUMINA_FLOW_CELL")
+ exp = transaction.getExperiment(FLOWCELL_SPACE + FLOWCELL_PROJECT + datetime.now().strftime("%Y.%m"))
+ if exp == None:
+ exp = transaction.createNewExperiment(FLOWCELL_SPACE + FLOWCELL_PROJECT + datetime.now().strftime("%Y.%m"),
+ EXPERIMENT_TYPE_CODE)
+ newFlowCell.setExperiment(exp)
+
+ run = runInfo.getAllchildren('Run')[0].attrib
+ if (run['Id'] != name):
+ raise NameError('Flowcell names do not match between directory name '+ name +
+ ' and ' + RUNINFO + 'property file: ' + run['Id'])
+
+ runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS)
+ RTAversion = (runParameters.getAllchildren('RTAVersion'))[0].text
+ ReagentKitBarcode = (runParameters.getAllchildren('ReagentKitBarcode'))[0].text
+ print RTAversion
+ addVocabularyTerm(transaction, "PIPELINE_VERSION", RTAversion)
+ newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", RTAversion)
+ newFlowCell.setPropertyValue("SBS_KIT", ReagentKitBarcode)
+
+ def setFcProperty(searchId, dict):
+ children = runInfo.getAllchildren(searchId)
+ for element in (dict):
+ if (element <> '') and (dict[element] <> ''):
+ newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]])
+
+ # Reading out <FlowcellLayout LaneCount="1" SurfaceCount="1" SwathCount="1" TileCount="12" />
+ setFcProperty('FlowcellLayout', RUNINFO_XML)
+
+ sequencer = runInfo.getAllchildren('Instrument')
+ newFlowCell.setPropertyValue("SEQUENCER", sequencer[0].text)
+
+ readMap = {}
+ reads = runInfo.getAllchildren('Reads')
+ read = reads[0].findall('Read')
+
+ for r in read:
+ cycles = r.get('NumCycles', 'str')
+ number = r.get('Number', 'str')
+ isIndexed = r.get('IsIndexedRead', 'str')
+ readMap[number] = [cycles, isIndexed]
+
+ # example of readMap: {'1': ['151', 'N'], '2': ['8', 'Y'], '3': ['8', 'Y'], '4': ['151', 'N']}
+ numberOfCycles = readMap['1'][0]
+ cyclesVocabularyName = "CYCLES"
+
+ addVocabularyTerm(transaction, cyclesVocabularyName, numberOfCycles)
+
+ newFlowCell.setPropertyValue("CYCLES_REQUESTED_BY_CUSTOMER", numberOfCycles)
+
+ indexCount = 0
+ readCount = 0
+
+ for e in readMap:
+ if readMap[e][1] == 'Y':
+ indexCount += 1
+ else:
+ readCount += 1
+
+ if readCount == 2:
+ newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END")
+ else:
+ newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ")
+
+ try:
+ newFlowCell.setPropertyValue("INDEXREAD", readMap['2'][0])
+ except:
+ newFlowCell.setPropertyValue("INDEXREAD", '0')
+
+ try:
+ if indexCount == 2:
+ newFlowCell.setPropertyValue("INDEXREAD2", readMap['3'][0])
+ else:
+ newFlowCell.setPropertyValue("INDEXREAD2", '0')
+ except:
+ newFlowCell.setPropertyValue("INDEXREAD2", '0')
+
+ newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", createOpenbisTimeStamp(incomingPath + '/' + RUNPARAMETERS))
+ newFlowCell.setPropertyValue("RUN_NAME_FOLDER", name)
+
+ # get the number of lanes
+ maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']]
+
+ [registerFlowLane(lane, transaction, name, newFlowCell) for lane in range(1,int(maxLanes)+1)]
+
+ replyTo = EMailAddress("manuel.kohler@bsse.ethz.ch")
+ fromAddress = replyTo
+ manuel = EMailAddress("manuel.kohler@bsse.ethz.ch")
+ ina = EMailAddress("ina.nissen@bsse.ethz.ch")
+ christian = EMailAddress("christian.beisel@bsse.ethz.ch")
+ katja = EMailAddress("katja.eschbach@bsse.ethz.ch")
+
+ transaction.getGlobalState().getMailClient().sendEmailMessage("Automatically created new flow cell " + name + " in openBIS", \
+ "A new sequencing run got started using flow cell " + name, replyTo, fromAddress, ina, katja, christian, manuel);
+
+ shutil.rmtree(incomingPath)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties
new file mode 100644
index 00000000000..27b2927d980
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-miseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for creating a flow cell
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/create-flowcell-miseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = create-flow-cell-miseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/create-flow-cell-nextseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/create-flow-cell-nextseq.py
new file mode 100755
index 00000000000..1c1b154530a
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/create-flow-cell-nextseq.py
@@ -0,0 +1,280 @@
+'''
+@copyright:
+2014 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Parses the two Illumina provided files 'RunParameters.xml' and 'RunInfo.xml'
+and creates one Sample of type 'ILLUMINA_FLOW_CELL' and sets Sample properties
+from those two XML files. Additionally the number of lanes are read out and
+are created as contained samples of type 'ILLUMINA_FLOW_LANE'.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for NextSeq runs: 140729_NS500318_0002_AH0T25AGXX
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+import re
+from time import *
+from datetime import *
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.common.mail import EMailAddress
+
+RUNPARAMETERS = 'RunParameters.xml'
+RUNINFO = 'RunInfo.xml'
+FLOWCELL_SPACE='/BSSE_FLOWCELLS/'
+FLOWCELL_PROJECT='FLOWCELLS/'
+EXPERIMENT_TYPE_CODE='HT_SEQUENCING'
+CYCLES_VOCABULARY_NAME = "CYCLES"
+
+# Mapping between XML file naming and openBIS properties
+
+RUNINFO_XML = {'LANECOUNT':'LaneCount', 'SURFACECOUNT':'SurfaceCount',
+ 'SWATHCOUNT':'SwathCount', 'TILECOUNT':'TileCount'}
+
+PERSISTANT_KEY_MAP = "persistant_key_map"
+
+#------------------------------------------------------------------------------
+
+class parseXmlFile:
+
+ def __init__(self, xmlFile):
+ self.xmlFile = xmlFile
+ self.tree = etree.parse(self.xmlFile)
+ self.root = self.tree.getroot()
+
+ def getXmlElement (self, elementName):
+ '''
+ Returns the text value of a given XML element
+ '''
+ for e in self.root.getchildren():
+ element = e.find(elementName)
+ if element is None:
+ return 'None'
+ else:
+ return element.text
+
+ def getAllchildren (self, elementName):
+ '''
+ finds all children of a given XML Element and returns them as list
+ '''
+ for e in self.root.getchildren():
+ # the '//' means look recursively for all children not only direct ones
+ childList = self.tree.findall('//' + elementName)
+ return childList
+
+# -----------------------------------------------------------------------------
+
+def createOpenbisTimeStamp(file):
+ '''
+ Creates a openBIS compatible time stamp of a file time stamp
+ '''
+ mtime = os.path.getmtime(file)
+ lt = localtime(mtime)
+ tz = localtime().tm_hour - gmtime().tm_hour
+ return (strftime("%Y-%m-%d %H:%M:%S GMT" + "%+.2d" % tz + ":00", lt))
+
+# -----------------------------------------------------------------------------
+
+def registerFlowLane(a_lane, transaction, name, newFlowCell):
+ '''
+ Registers a new Flow lane
+ '''
+ newFlowLane = transaction.createNewSample(FLOWCELL_SPACE + name + ':' + str(a_lane), "ILLUMINA_FLOW_LANE")
+ newFlowLane.setPropertyValue('CONCENTRATION_FLOWLANE', str(0))
+ newFlowLane.setContainer(newFlowCell)
+
+# -----------------------------------------------------------------------------
+
+def addVocabularyTerm(transaction, vocabularyName, vocabularyCode):
+ modifiableVocabulary = transaction.getVocabularyForUpdate(vocabularyName)
+ if not (modifiableVocabulary.containsTerm(vocabularyCode)):
+ ordinals = []
+ terms = modifiableVocabulary.getTerms()
+ for term in terms:
+ ordinals.append(term.getOrdinal())
+
+ newOrdinal = max(ordinals)+1;
+
+ newTerm = transaction.createNewVocabularyTerm();
+ newTerm.setCode(vocabularyCode)
+ newTerm.setOrdinal(newOrdinal)
+ modifiableVocabulary.addTerm(newTerm)
+
+# -----------------------------------------------------------------------------
+
+def sendEmail(mailClient, fcId):
+
+ replyTo = EMailAddress("manuel.kohler@bsse.ethz.ch")
+ fromAddress = replyTo
+ manuel = EMailAddress("manuel.kohler@bsse.ethz.ch")
+ ina = EMailAddress("ina.nissen@bsse.ethz.ch")
+ christian = EMailAddress("christian.beisel@bsse.ethz.ch")
+ katja = EMailAddress("katja.eschbach@bsse.ethz.ch")
+ philippe = EMailAddress("philippe.demougin@unibas.ch")
+
+ mailClient.sendEmailMessage("Automatically created new NextSeq flow cell " + fcId + " in openBIS", \
+ "A new NextSeq run got started with flow cell: " + fcId , replyTo, fromAddress, ina, katja, christian, philippe, manuel);
+
+# -----------------------------------------------------------------------------
+
+def post_storage(context):
+ mailClient = context.getGlobalState().getMailClient()
+ results = context.getPersistentMap().get(PERSISTANT_KEY_MAP)
+ sendEmail(mailClient, results[0])
+
+# -----------------------------------------------------------------------------
+
+def searchSample(transaction, sampleName):
+
+ # Search for the sample and check if there is already sample with this fcId
+ search_service = transaction.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sampleName));
+ foundSamples = search_service.searchForSamples(sc)
+ return foundSamples
+
+# -----------------------------------------------------------------------------
+
+def setFcProperty(searchId, dict, runInfo, newFlowCell):
+ children = runInfo.getAllchildren(searchId)
+ for element in (dict):
+ if (element <> '') and (dict[element] <> ''):
+ newFlowCell.setPropertyValue(element, children[0].attrib[dict[element]])
+
+# -----------------------------------------------------------------------------
+
+def setIndexLengths (readMap, newFlowCell):
+
+ indexCount = 0
+ readCount = 0
+
+ print(readMap)
+ for entry in readMap:
+ if readMap[entry][1] == 'Y':
+ indexCount += 1
+ else:
+ readCount += 1
+
+ if readCount == 2:
+ newFlowCell.setPropertyValue("END_TYPE", "PAIRED_END")
+ else:
+ newFlowCell.setPropertyValue("END_TYPE", "SINGLE_READ")
+
+ try:
+ if indexCount == 1:
+ newFlowCell.setPropertyValue("INDEXREAD", readMap['2'][0])
+ else:
+ newFlowCell.setPropertyValue("INDEXREAD", '0')
+ except:
+ newFlowCell.setPropertyValue("INDEXREAD", '0')
+
+ try:
+ if indexCount == 2:
+ newFlowCell.setPropertyValue("INDEXREAD2", readMap['3'][0])
+ newFlowCell.setPropertyValue("INDEXREAD", readMap['2'][0])
+ else:
+ newFlowCell.setPropertyValue("INDEXREAD2", '0')
+ except:
+ newFlowCell.setPropertyValue("INDEXREAD2", '0')
+
+# -----------------------------------------------------------------------------
+
+def sanitizeString(myString):
+ return re.sub('[^A-Za-z0-9]+', '_', myString)
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+
+ incoming = transaction.getIncoming()
+ incomingPath = incoming.getAbsolutePath()
+
+ name = incoming.getName()
+ # ['120726', 'M00721', '0011', 'A000000000-A1FVF']
+ # NextSeq: 140729_NS500318_0002_AH0T25AGXX
+
+ runDate, MiseqID, runningNumber, trayAndFcId = name.split("_")
+ tray = trayAndFcId[0]
+ fcId = trayAndFcId[1:]
+ transaction.getRegistrationContext().getPersistentMap().put(PERSISTANT_KEY_MAP, [fcId])
+
+ # Parse the RunInfo.xml and RunParameters.xml
+ runInfo = parseXmlFile(incomingPath + '/' + RUNINFO)
+ runParameters = parseXmlFile(incomingPath + '/' + RUNPARAMETERS)
+
+ # get the number of lanes
+ maxLanes = runInfo.getAllchildren('FlowcellLayout')[0].attrib[RUNINFO_XML['LANECOUNT']]
+
+ foundSamples = searchSample(transaction, fcId)
+ # if flow cell already exists then just get it for an update
+ if foundSamples.size() > 0:
+ print('Already found a Flow Cell with the following name: '+ name + ". Will re-set the properties...")
+ newFlowCell = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier())
+ else:
+ # Create a new Flow Cell
+ newFlowCell = transaction.createNewSample(FLOWCELL_SPACE + fcId, "ILLUMINA_FLOW_CELL")
+
+ exp = transaction.getExperiment(FLOWCELL_SPACE + FLOWCELL_PROJECT + datetime.now().strftime("%Y.%m"))
+ if exp == None:
+ exp = transaction.createNewExperiment(FLOWCELL_SPACE + FLOWCELL_PROJECT + datetime.now().strftime("%Y.%m"),
+ EXPERIMENT_TYPE_CODE)
+ newFlowCell.setExperiment(exp)
+
+ foundLanes = searchSample(transaction, fcId + ":1")
+ if not foundLanes:
+ # Create flow lanes, but we ignore the maxLanes, as we have 4 physical lanes but only one logical lane
+ [registerFlowLane(lane, transaction, fcId, newFlowCell) for lane in range(1,int(1)+1)]
+
+ run = runInfo.getAllchildren('Run')[0].attrib
+ RTAversion = (runParameters.getAllchildren('RTAVersion'))[0].text
+ addVocabularyTerm(transaction, "PIPELINE_VERSION", RTAversion)
+ newFlowCell.setPropertyValue("ILLUMINA_PIPELINE_VERSION", RTAversion)
+
+ runMode = sanitizeString(runParameters.getAllchildren('Chemistry')[0].text)
+ addVocabularyTerm(transaction, "RUN_MODE_VOCABULARY", runMode)
+ newFlowCell.setPropertyValue("RUN_MODE", runMode)
+
+ # Reading out <FlowcellLayout LaneCount="1" SurfaceCount="1" SwathCount="1" TileCount="12" />
+ setFcProperty('FlowcellLayout', RUNINFO_XML, runInfo, newFlowCell)
+
+ sequencer = runInfo.getAllchildren('Instrument')
+ newFlowCell.setPropertyValue("SEQUENCER", sequencer[0].text)
+ newFlowCell.setPropertyValue("FLOW_CELL_SEQUENCED_ON", createOpenbisTimeStamp(incomingPath + '/' + RUNPARAMETERS))
+ newFlowCell.setPropertyValue("RUN_NAME_FOLDER", name)
+
+ readMap = {}
+ reads = runInfo.getAllchildren('Reads')
+ read = reads[0].findall('Read')
+
+ for r in read:
+ cycles = r.get('NumCycles', 'str')
+ number = r.get('Number', 'str')
+ isIndexed = r.get('IsIndexedRead', 'str')
+ readMap[number] = [cycles, isIndexed]
+
+ # example of readMap: {'1': ['151', 'N'], '2': ['8', 'Y'], '3': ['8', 'Y'], '4': ['151', 'N']}
+ numberOfCycles = readMap['1'][0]
+ addVocabularyTerm(transaction, CYCLES_VOCABULARY_NAME, numberOfCycles)
+ newFlowCell.setPropertyValue("CYCLES_REQUESTED_BY_CUSTOMER", numberOfCycles)
+
+ setIndexLengths (readMap, newFlowCell)
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/plugin.properties
new file mode 100644
index 00000000000..8131d29f94d
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/create-flowcell-nextseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for creating a flow cell
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/create-flowcell-nextseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = create-flow-cell-nextseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/plugin.properties
new file mode 100644
index 00000000000..2fcbb9bec08
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/plugin.properties
@@ -0,0 +1,10 @@
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${root}/dss/read-demultiplex-stats-miseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = read-demultiplex-stats-miseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/read-demultiplex-stats-miseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/read-demultiplex-stats-miseq.py
new file mode 100755
index 00000000000..4be28cc09e8
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-miseq/read-demultiplex-stats-miseq.py
@@ -0,0 +1,545 @@
+'''
+ @copyright: 2012 ETH Zuerich, CISD
+
+ @license:
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+
+@author: Manuel Kohler
+
+XML Structur which is processed:
+
+<?xml version="1.0"?>
+<Summary>
+ <Lane index="8">
+ <Sample index="lane8">
+ <Barcode index="Undetermined">
+ <Tile index="1101">
+ <Read index="1">
+ <Raw>
+ <Yield>1921250</Yield>
+ <YieldQ30>949680</YieldQ30>
+ <ClusterCount>38425</ClusterCount>
+ <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode>
+ <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode>
+ <QualityScoreSum>40995660</QualityScoreSum>
+ </Raw>
+ <Pf>
+ <Yield>945450</Yield>
+ <YieldQ30>854815</YieldQ30>
+ <ClusterCount>18909</ClusterCount>
+ <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode>
+ <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode>
+ <QualityScoreSum>33815505</QualityScoreSum>
+ </Pf>
+ </Read>
+ </Tile>
+ [...]
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+'''
+
+import time
+import os
+import fnmatch
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+
+class parseXmlFile:
+
+ def __init__(self, xmlFile):
+ self.xmlFile = xmlFile
+ self.tree = etree.parse(self.xmlFile)
+ self.root = self.tree.getroot()
+
+# -----------------------------------------------------------------------------
+
+class qcValues(object):
+ def __init__(self, Yield = 0, YieldQ30 = 0, ClusterCount = 0,
+ ClusterCount0MismatchBarcode = 0, ClusterCount1MismatchBarcode = 0,
+ QualityScoreSum = 0, *args, **kwargs):
+ self.Yield = Yield
+ self.YieldQ30 = YieldQ30
+ self.ClusterCount = ClusterCount
+ self.ClusterCount0MismatchBarcode = ClusterCount0MismatchBarcode
+ self.ClusterCount1MismatchBarcode = ClusterCount1MismatchBarcode
+ self.QualityScoreSum = QualityScoreSum
+
+ def __str__(self):
+ return "Yield: %s, YieldQ30: %s, ClusterCount: %s, ClusterCount0MismatchBarcode: %s," \
+ " CusterCount1MismatchBarcode: %s, QualityScoreSum: %s" \
+ % (self.Yield, self.YieldQ30, self.ClusterCount, self.ClusterCount0MismatchBarcode,
+ self.ClusterCount1MismatchBarcode, self.QualityScoreSum)
+
+class sample:
+ def __init__(self, Lane = 0, Sample = '', Barcode = '', Tile = '', Read = '', rawqc = qcValues([]),
+ pfqc = qcValues([]), *args, **kwargs):
+ self.Lane = Lane
+ self.Sample = Sample
+ self.Barcode = Barcode
+ self.Tile = Tile
+ self.Read = Read
+ self.rawqc = rawqc
+ self.pfqc = pfqc
+
+ def __str__(self):
+ return "Lane: %s, Sample: %s, Barcode: %s, Tile: %s, Read: %s, rawqc: %s, pfqc: %s" \
+ % (self.Lane, self.Sample, self.Barcode, self.Tile, self.Read, self.rawqc, self.pfqc)
+
+# -----------------------------------------------------------------------------
+
+class Statistics:
+ def __init__(self, lane = 0, sampleName = "", index1 = "NoIndex", index2 = "NoIndex", pfYieldSum = 0,
+ rawYieldSum = 0, pfPercentage = 0.0, rawReadsSum = 0, pfReadsSum = 0,
+ pfYieldQ30Sum = 0, qualityScoreSum = 0, rawPercentageReadsPerLane = 0.0,
+ pfYieldQ30Percentage = 0.0, pfsumQualityScore = 0, pfmeanQualityScore = 0.0):
+ self.lane = lane
+ self.sampleName = sampleName
+ self.index1 = index1
+ self.index2 = index2
+ self.pfYieldSum = pfYieldSum
+ self.rawYieldSum = rawYieldSum
+ self.pfPercentage = pfPercentage
+ self.rawReadsSum = rawReadsSum
+ self.pfReadsSum = pfReadsSum
+ self.pfYieldQ30Sum = pfYieldQ30Sum
+ self.qualityScoreSum = qualityScoreSum
+ self.rawPercentageReadsPerLane = rawPercentageReadsPerLane
+ self.pfYieldQ30Percentage = pfYieldQ30Percentage
+ self.pfsumQualityScore = pfsumQualityScore
+ self.pfmeanQualityScore = pfmeanQualityScore
+
+ def __str__(self):
+ return "lane: %s, sampleName: %s, index1: %s, index2: %s, pfYieldSum: %s, pfPercentage: %s," \
+ " rawReadsSum: %s, pfReadsSum: %s," \
+ " rawPercentageReadsPerLane: %s, pfYieldQ30Percentage: %s," \
+ " pfmeanQualityScore: %s" \
+ % (self.lane, self.sampleName, self.index1, self.index2, self.pfYieldSum, self.pfPercentage,
+ self.rawReadsSum, self.pfReadsSum,
+ self.rawPercentageReadsPerLane, self.pfYieldQ30Percentage, self.pfmeanQualityScore)
+
+ def calculatePercentagePF (self, rawYield = 0, pfYield = 1):
+ try:
+ return round(float(pfYield) / float(rawYield) * 100, 2)
+ except:
+ return 0.0
+
+ def calulateMeanQualityScore (self, pfqualityScoreSum = 0, pfYield = 1):
+ try:
+ return round (float(pfqualityScoreSum) / float(pfYield), 2)
+ except:
+ return 0.0
+
+ def calculateYieldQ30Percentage (self, pfYieldQ30 = 0, pfYield = 1):
+ try:
+ return round (float(pfYieldQ30) / float(pfYield) * 100, 2)
+ except:
+ return 0.0
+
+# -----------------------------------------------------------------------------
+
+def xml2Memory(DEMULTIPLEX_XML):
+ '''
+ Parse the XML file and put all values in a memory structure:
+ List of:
+ lane, sample, barcode, tile, read, qcRawList, qcPfList
+ '''
+
+ RAW_TAG = "Raw"
+ PF_TAG = "Pf"
+
+ sampleList = []
+
+ xml = parseXmlFile(DEMULTIPLEX_XML)
+ r = xml.tree.getroot()
+
+ for lane in r.getchildren():
+ for mysample in lane:
+ for barcode in mysample:
+ for tile in barcode:
+ for read in tile:
+
+ qcRaw = qcValues()
+ qcPf = qcValues()
+ qcRawList = []
+ qcPfList = []
+
+ # Read out the Raw fields
+ raw = read.find(RAW_TAG)
+ for child in raw.getchildren():
+ # equivalent to a Java reflection
+ setattr(qcRaw, child.tag, int(child.text))
+
+ # Read out the Pf fields
+ pf = read.find(PF_TAG)
+ for child in pf.getchildren():
+ # equivalent to a Java reflection
+ setattr(qcPf, child.tag, int(child.text))
+
+ qcRawList.append(qcRaw)
+ qcPfList.append(qcPf)
+
+ singleElement = sample ()
+
+ setattr(singleElement, lane.tag, lane.attrib)
+ setattr(singleElement, mysample.tag, mysample.attrib)
+ setattr(singleElement, barcode.tag, barcode.attrib)
+ setattr(singleElement, tile.tag, tile.attrib)
+ setattr(singleElement, read.tag, read.attrib)
+ singleElement.rawqc = qcRawList
+ singleElement.pfqc = qcPfList
+
+ sampleList.append(singleElement)
+ return sampleList
+
+# -----------------------------------------------------------------------------
+
+def calculateStatistics(listofSamples):
+ '''
+ Structure of 'listofSamples'
+ Lane: {'index': '6'}, Sample: {'index': 'BSSE-QGF-3524_C0NKPACXX'}, Barcode: {'index': 'TGACCA'},
+ Tile: {'index': '2307'}, Read: {'index': '1'}, rawqc:<mem>, pfqc:<mem>
+ '''
+
+ numberOfTiles = len(listofSamples)
+
+ tile = sample()
+ raw = qcValues ()
+ pf = qcValues ()
+ stats = Statistics()
+
+ for tile in listofSamples:
+ raw = tile.rawqc[0]
+ pf = tile.pfqc[0]
+
+ stats.pfYieldSum += pf.Yield
+ stats.rawYieldSum += raw.Yield
+ stats.rawReadsSum += raw.ClusterCount
+ stats.pfReadsSum += pf.ClusterCount
+ stats.pfYieldQ30Sum += pf.YieldQ30
+ stats.qualityScoreSum += pf.QualityScoreSum
+
+ # Can not be set here, needs to be calculated later
+ #stats.rawPercentageReadsPerLane = rawPercentageReadsPerLane
+ stats.pfPercentage = stats.calculatePercentagePF(stats.rawYieldSum, stats.pfYieldSum)
+ stats.pfYieldQ30Percentage = stats.calculateYieldQ30Percentage(stats.pfYieldQ30Sum, stats.pfYieldSum)
+ stats.pfmeanQualityScore = stats.calulateMeanQualityScore(stats.qualityScoreSum, stats.pfYieldSum)
+ stats.lane = listofSamples[0].Lane.values()[0]
+ stats.sampleName = listofSamples[0].Sample.values()[0]
+ index = listofSamples[0].Barcode.values()[0]
+ try:
+ stats.index1, stats.index2 = index.split("-")
+ except:
+ stats.index1 = index
+ return stats
+
+# -----------------------------------------------------------------------------
+
+
+def rawReadSumPerSamples(stat):
+ '''
+ Creates a dictionary with the lanes as keys
+ The values are a list where the elements are a dictionary again.
+ This dictionary has the sample names as key and the RawReadSum as value.
+
+ Example:
+ {4': [{'BSSE-QGF-3434_C0NKPACXX': 248999502}], '7': [{'lane7': 123921974},
+ {'BSSE-QGF-3527_C0NKPACXX': 38587703}, {'BSSE-QGF-3529_C0NKPACXX': 30130893},
+ {'BSSE-QGF-3528_C0NKPACXX': 34519296}, {'BSSE-QGF-3526_C0NKPACXX': 34980179}]}
+ '''
+
+ laneDict = {}
+ for e in stat:
+ if e.lane not in laneDict:
+ laneDict[e.lane] = [{e.sampleName:e.rawReadsSum}]
+ else:
+ laneDict[e.lane].append({e.sampleName:e.rawReadsSum})
+ return laneDict
+
+# -----------------------------------------------------------------------------
+
+def createSumRawReadsPerLane(laneDict):
+ '''
+ Creates a dictionary with lane as key and sum of Raw Reads as value:
+ {'1': 183180877, '3': 244968562, '2': 191496395, '5': 193466239, '4': 248999502,
+ '7': 262140045, '6': 257136830, '8': 209948449}
+ '''
+ sumRawReadsDict = {}
+ for lane in laneDict:
+ sumRawReads = 0
+ for sampleNameDict in laneDict[lane]:
+ sumRawReads += sampleNameDict.values()[0]
+
+ sumRawReadsDict[lane] = sumRawReads
+ return sumRawReadsDict
+
+# -----------------------------------------------------------------------------
+
+def createPercentagePerLane(laneDict, sumRawReadsDict):
+ '''
+ Creates a dictionary with the sample Name as key and the percentage of raw reads related to
+ all reads in the same lane
+ {'lane7': 47.27, 'BSSE-QGF-3433_C0NKPACXX': 100.0, 'BSSE-QGF-3666_C0NKPACXX': 54.12}
+ '''
+
+ relRawReadsDict = {}
+ for lane in laneDict:
+ for sampleName in laneDict[lane]:
+ relRawReadsDict[sampleName.keys()[0]] = round(float(sampleName.values()[0]) /
+ float(sumRawReadsDict[lane]) * 100, 2)
+ return relRawReadsDict
+
+# -----------------------------------------------------------------------------
+
+def locate(pattern, root):
+ '''Locate all files matching supplied filename pattern in and below
+ supplied root directory.'''
+ for path, dirs, files in os.walk(os.path.abspath(root)):
+ for filename in fnmatch.filter(files, pattern):
+ yield os.path.join(path, filename)
+
+# -----------------------------------------------------------------------------
+
+def getVocabulary(transaction, vocabularyCode):
+
+ vocabularyTermList = []
+ vocabulary = transaction.getSearchService().searchForVocabulary(vocabularyCode)
+ if (vocabulary is None):
+ print 'VOCABULARY %s does not exist' % (vocabularyCode)
+ else:
+ print "Getting VOCABULARY: " + vocabulary.getCode()
+ for term in vocabulary.getTerms():
+ vocabularyTermList.append(term.getCode())
+ vocabularyTermList.sort()
+ return vocabularyTermList
+
+# -----------------------------------------------------------------------------
+
+def getFlowCellMetaData (transaction,flowCellId):
+
+ def sortedDictValues(adict):
+ keys = adict.keys()
+ keys.sort()
+ return map(adict.get, keys)
+
+ search = transaction.getSearchService()
+ sc = SearchCriteria()
+ print('Searching FlowCell: '+ str(flowCellId))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search.searchForSamples(sc)
+
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + \
+ ' flow cells found which match the criterias: '+ flowCellId)
+
+ fcPropertiesDict = {}
+ fcPropertyTypes = []
+
+ fcProperties = foundFlowCells[0].getSample().getProperties()
+ for property in fcProperties:
+ code = property.getPropertyType().getSimpleCode()
+ fcPropertyTypes.append(code)
+ fcPropertiesDict[code] = property.getValue()
+
+ fcPropertyTypes.sort()
+ return fcPropertiesDict, fcPropertyTypes
+
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+ '''
+ Main
+ '''
+
+ FASTQ_DATA_SET_TYPE='FASTQ_GZ'
+ DEMUX_FILE='Flowcell_demux_summary.xml'
+ NO_INDEX='NOINDEX'
+ UNDETERMINED='UNDETERMINED'
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName()
+
+ print('\n'+time.ctime())
+
+ fcPropertiesDict, fcPropertyTypes = getFlowCellMetaData(transaction, name)
+ print fcPropertiesDict
+ print fcPropertyTypes
+
+ search_service = transaction.getSearchService()
+
+ FileGenerator= locate(DEMUX_FILE, incomingPath)
+ DEMULTIPLEX_XML = FileGenerator.next()
+
+ sampleList = xml2Memory(DEMULTIPLEX_XML)
+
+ sa = sample()
+ sampleDict = {}
+
+ # key = sample name, value = sample()
+ for element in range(0, len(sampleList)):
+ sa = sampleList[element]
+ # Check if new sample
+ if (sa.Sample is not sampleList[element - 1].Sample):
+ sampleName = sa.Sample.values()[0]
+ sampleDict[sampleName] = [sa]
+ else:
+ sampleDict[sampleName].append(sa)
+
+ stat = [calculateStatistics(sampleDict[mysample]) for mysample in sampleDict]
+
+ # calculate the relative amount of reads per index
+ laneDict = rawReadSumPerSamples(stat)
+ sumRawReadsDict = createSumRawReadsPerLane(laneDict)
+ relRawReadsDict = createPercentagePerLane(laneDict, sumRawReadsDict)
+
+ # set the values in the object
+ for mye in stat:
+ mye.rawPercentageReadsPerLane = relRawReadsDict[mye.sampleName]
+
+ def sampleSearch(Code=''):
+ sc = SearchCriteria()
+ numberOfLanes = 0
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, Code));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+ if foundSample.size() > 0:
+ # Search for contained samples
+ sampleSc = SearchCriteria()
+ sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc))
+ foundContainedSamples = search_service.searchForSamples(sampleSc)
+ numberOfLanes = foundContainedSamples.size()
+ return foundSample, foundContainedSamples, numberOfLanes
+
+#--------------------------------------------------------------------------------------------------------------------------------------
+
+ def searchDataSetsofSample(sample, index1, index2, DATA_SET_TYPE):
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+
+ dataSetSc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ #dataSetSc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE))
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("BARCODE", index1 ))
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("INDEX2", index2))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ print "foundDataSets.size() "+ str(foundDataSets.size())
+ for ds in foundDataSets:
+ print "Index1 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('BARCODE')
+ print "Index2 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('INDEX2')
+
+ return foundDataSets
+
+#--------------------------------------------------------------------------------------------------------------------------------------
+
+ def getIndexesofDataSetsofSample(sample, DATA_SET_TYPE):
+
+ index1List = []
+ index2List = []
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+
+ dataSetSc = SearchCriteria()
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ for ds in foundDataSets:
+ index1List.append(ds.getPropertyValue('BARCODE'))
+ index2List.append(ds.getPropertyValue('INDEX2'))
+ return index1List, index2List
+
+
+ flowcell, lanes, numberOfLanes = sampleSearch(name)
+
+ index1Length = fcPropertiesDict['INDEXREAD']
+ index2Length = fcPropertiesDict['INDEXREAD2']
+
+ for mystat in stat:
+ laneCode = flowcell[0].getCode() + ":" + mystat.lane
+ searchIndex1 = mystat.index1.upper()
+ searchIndex2 = mystat.index2.upper()
+ print '\n'
+ print mystat
+
+ index1List, index2List = getIndexesofDataSetsofSample(laneCode, FASTQ_DATA_SET_TYPE)
+ print "Searching for "+ searchIndex1 + " in " + str(index1List)
+ print "Searching for "+ searchIndex2 + " in " + str(index2List)
+
+ if searchIndex1 not in (NO_INDEX):
+ if searchIndex1 not in (UNDETERMINED):
+ if index1Length > 7:
+ searchIndex1List = [ index1 for index1 in index1List if searchIndex1 in index1]
+ else:
+ searchIndex1List = [ index1 for index1 in index1List if searchIndex1 in index1[:-2]]
+ try:
+ if len(searchIndex1List) > 1:
+ if searchIndex1List[0].startswith(searchIndex1):
+ searchIndex1 = searchIndex1List[0]
+ else:
+ searchIndex1 = searchIndex1List[1]
+ else:
+ searchIndex1 = searchIndex1List[0]
+ print searchIndex1
+ except:
+ searchIndex1 = 'MISSING'
+ else:
+ searchIndex1 = NO_INDEX
+ if searchIndex2 not in (NO_INDEX):
+ if searchIndex2 not in (UNDETERMINED):
+ if index2Length > 7:
+ searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2]
+ else:
+ searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2[:-2]]
+ try:
+ searchIndex2 = searchIndex2[0]
+ except:
+ searchIndex1 = 'MISSING'
+ else:
+ searchIndex2 = NO_INDEX
+
+ print "searchIndex1 " + str(searchIndex1)
+ print "searchIndex2 " + str(searchIndex2)
+
+ # Search for a data set with those two indices
+ DataSet = searchDataSetsofSample(laneCode, searchIndex1, searchIndex2, FASTQ_DATA_SET_TYPE)
+ try:
+ assert DataSet.size() == 1
+ except AssertionError:
+ print (str(DataSet.size()) + ' data sets found which match the criterias: '+
+ str(laneCode), searchIndex1, searchIndex2)
+ continue
+
+ sa = transaction.getDataSetForUpdate(DataSet[0].getDataSetCode())
+ sa.setPropertyValue('YIELD_MBASES', str(mystat.pfYieldSum))
+ sa.setPropertyValue('RAW_YIELD_MBASES', str(mystat.rawYieldSum))
+ sa.setPropertyValue('PERCENTAGE_PASSED_FILTERING',str(mystat.pfPercentage))
+ sa.setPropertyValue('PF_READS_SUM',str(mystat.pfReadsSum))
+ sa.setPropertyValue('RAW_READS_SUM',str(mystat.rawReadsSum))
+ sa.setPropertyValue('PERCENTAGE_RAW_CLUSTERS_PER_LANE', str(mystat.rawPercentageReadsPerLane))
+ sa.setPropertyValue('PFYIELDQ30PERCENTAGE', str(mystat.pfYieldQ30Percentage))
+ sa.setPropertyValue('PFMEANQUALITYSCORE', str(mystat.pfmeanQualityScore))
+
+ print "Modified data sets properties of: " + DataSet[0].getDataSetCode()
+
+ print "DONE"
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/plugin.properties
new file mode 100644
index 00000000000..af28b8443a7
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/plugin.properties
@@ -0,0 +1,10 @@
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${root}/dss/read-demultiplex-stats-nextseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = read-demultiplex-stats-nextseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/read-demultiplex-stats-nextseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/read-demultiplex-stats-nextseq.py
new file mode 100755
index 00000000000..4be28cc09e8
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats-nextseq/read-demultiplex-stats-nextseq.py
@@ -0,0 +1,545 @@
+'''
+ @copyright: 2012 ETH Zuerich, CISD
+
+ @license:
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+
+@author: Manuel Kohler
+
+XML Structur which is processed:
+
+<?xml version="1.0"?>
+<Summary>
+ <Lane index="8">
+ <Sample index="lane8">
+ <Barcode index="Undetermined">
+ <Tile index="1101">
+ <Read index="1">
+ <Raw>
+ <Yield>1921250</Yield>
+ <YieldQ30>949680</YieldQ30>
+ <ClusterCount>38425</ClusterCount>
+ <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode>
+ <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode>
+ <QualityScoreSum>40995660</QualityScoreSum>
+ </Raw>
+ <Pf>
+ <Yield>945450</Yield>
+ <YieldQ30>854815</YieldQ30>
+ <ClusterCount>18909</ClusterCount>
+ <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode>
+ <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode>
+ <QualityScoreSum>33815505</QualityScoreSum>
+ </Pf>
+ </Read>
+ </Tile>
+ [...]
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+'''
+
+import time
+import os
+import fnmatch
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+
+class parseXmlFile:
+
+ def __init__(self, xmlFile):
+ self.xmlFile = xmlFile
+ self.tree = etree.parse(self.xmlFile)
+ self.root = self.tree.getroot()
+
+# -----------------------------------------------------------------------------
+
+class qcValues(object):
+ def __init__(self, Yield = 0, YieldQ30 = 0, ClusterCount = 0,
+ ClusterCount0MismatchBarcode = 0, ClusterCount1MismatchBarcode = 0,
+ QualityScoreSum = 0, *args, **kwargs):
+ self.Yield = Yield
+ self.YieldQ30 = YieldQ30
+ self.ClusterCount = ClusterCount
+ self.ClusterCount0MismatchBarcode = ClusterCount0MismatchBarcode
+ self.ClusterCount1MismatchBarcode = ClusterCount1MismatchBarcode
+ self.QualityScoreSum = QualityScoreSum
+
+ def __str__(self):
+ return "Yield: %s, YieldQ30: %s, ClusterCount: %s, ClusterCount0MismatchBarcode: %s," \
+ " CusterCount1MismatchBarcode: %s, QualityScoreSum: %s" \
+ % (self.Yield, self.YieldQ30, self.ClusterCount, self.ClusterCount0MismatchBarcode,
+ self.ClusterCount1MismatchBarcode, self.QualityScoreSum)
+
+class sample:
+ def __init__(self, Lane = 0, Sample = '', Barcode = '', Tile = '', Read = '', rawqc = qcValues([]),
+ pfqc = qcValues([]), *args, **kwargs):
+ self.Lane = Lane
+ self.Sample = Sample
+ self.Barcode = Barcode
+ self.Tile = Tile
+ self.Read = Read
+ self.rawqc = rawqc
+ self.pfqc = pfqc
+
+ def __str__(self):
+ return "Lane: %s, Sample: %s, Barcode: %s, Tile: %s, Read: %s, rawqc: %s, pfqc: %s" \
+ % (self.Lane, self.Sample, self.Barcode, self.Tile, self.Read, self.rawqc, self.pfqc)
+
+# -----------------------------------------------------------------------------
+
+class Statistics:
+ def __init__(self, lane = 0, sampleName = "", index1 = "NoIndex", index2 = "NoIndex", pfYieldSum = 0,
+ rawYieldSum = 0, pfPercentage = 0.0, rawReadsSum = 0, pfReadsSum = 0,
+ pfYieldQ30Sum = 0, qualityScoreSum = 0, rawPercentageReadsPerLane = 0.0,
+ pfYieldQ30Percentage = 0.0, pfsumQualityScore = 0, pfmeanQualityScore = 0.0):
+ self.lane = lane
+ self.sampleName = sampleName
+ self.index1 = index1
+ self.index2 = index2
+ self.pfYieldSum = pfYieldSum
+ self.rawYieldSum = rawYieldSum
+ self.pfPercentage = pfPercentage
+ self.rawReadsSum = rawReadsSum
+ self.pfReadsSum = pfReadsSum
+ self.pfYieldQ30Sum = pfYieldQ30Sum
+ self.qualityScoreSum = qualityScoreSum
+ self.rawPercentageReadsPerLane = rawPercentageReadsPerLane
+ self.pfYieldQ30Percentage = pfYieldQ30Percentage
+ self.pfsumQualityScore = pfsumQualityScore
+ self.pfmeanQualityScore = pfmeanQualityScore
+
+ def __str__(self):
+ return "lane: %s, sampleName: %s, index1: %s, index2: %s, pfYieldSum: %s, pfPercentage: %s," \
+ " rawReadsSum: %s, pfReadsSum: %s," \
+ " rawPercentageReadsPerLane: %s, pfYieldQ30Percentage: %s," \
+ " pfmeanQualityScore: %s" \
+ % (self.lane, self.sampleName, self.index1, self.index2, self.pfYieldSum, self.pfPercentage,
+ self.rawReadsSum, self.pfReadsSum,
+ self.rawPercentageReadsPerLane, self.pfYieldQ30Percentage, self.pfmeanQualityScore)
+
+ def calculatePercentagePF (self, rawYield = 0, pfYield = 1):
+ try:
+ return round(float(pfYield) / float(rawYield) * 100, 2)
+ except:
+ return 0.0
+
+ def calulateMeanQualityScore (self, pfqualityScoreSum = 0, pfYield = 1):
+ try:
+ return round (float(pfqualityScoreSum) / float(pfYield), 2)
+ except:
+ return 0.0
+
+ def calculateYieldQ30Percentage (self, pfYieldQ30 = 0, pfYield = 1):
+ try:
+ return round (float(pfYieldQ30) / float(pfYield) * 100, 2)
+ except:
+ return 0.0
+
+# -----------------------------------------------------------------------------
+
+def xml2Memory(DEMULTIPLEX_XML):
+ '''
+ Parse the XML file and put all values in a memory structure:
+ List of:
+ lane, sample, barcode, tile, read, qcRawList, qcPfList
+ '''
+
+ RAW_TAG = "Raw"
+ PF_TAG = "Pf"
+
+ sampleList = []
+
+ xml = parseXmlFile(DEMULTIPLEX_XML)
+ r = xml.tree.getroot()
+
+ for lane in r.getchildren():
+ for mysample in lane:
+ for barcode in mysample:
+ for tile in barcode:
+ for read in tile:
+
+ qcRaw = qcValues()
+ qcPf = qcValues()
+ qcRawList = []
+ qcPfList = []
+
+ # Read out the Raw fields
+ raw = read.find(RAW_TAG)
+ for child in raw.getchildren():
+ # equivalent to a Java reflection
+ setattr(qcRaw, child.tag, int(child.text))
+
+ # Read out the Pf fields
+ pf = read.find(PF_TAG)
+ for child in pf.getchildren():
+ # equivalent to a Java reflection
+ setattr(qcPf, child.tag, int(child.text))
+
+ qcRawList.append(qcRaw)
+ qcPfList.append(qcPf)
+
+ singleElement = sample ()
+
+ setattr(singleElement, lane.tag, lane.attrib)
+ setattr(singleElement, mysample.tag, mysample.attrib)
+ setattr(singleElement, barcode.tag, barcode.attrib)
+ setattr(singleElement, tile.tag, tile.attrib)
+ setattr(singleElement, read.tag, read.attrib)
+ singleElement.rawqc = qcRawList
+ singleElement.pfqc = qcPfList
+
+ sampleList.append(singleElement)
+ return sampleList
+
+# -----------------------------------------------------------------------------
+
+def calculateStatistics(listofSamples):
+ '''
+ Structure of 'listofSamples'
+ Lane: {'index': '6'}, Sample: {'index': 'BSSE-QGF-3524_C0NKPACXX'}, Barcode: {'index': 'TGACCA'},
+ Tile: {'index': '2307'}, Read: {'index': '1'}, rawqc:<mem>, pfqc:<mem>
+ '''
+
+ numberOfTiles = len(listofSamples)
+
+ tile = sample()
+ raw = qcValues ()
+ pf = qcValues ()
+ stats = Statistics()
+
+ for tile in listofSamples:
+ raw = tile.rawqc[0]
+ pf = tile.pfqc[0]
+
+ stats.pfYieldSum += pf.Yield
+ stats.rawYieldSum += raw.Yield
+ stats.rawReadsSum += raw.ClusterCount
+ stats.pfReadsSum += pf.ClusterCount
+ stats.pfYieldQ30Sum += pf.YieldQ30
+ stats.qualityScoreSum += pf.QualityScoreSum
+
+ # Can not be set here, needs to be calculated later
+ #stats.rawPercentageReadsPerLane = rawPercentageReadsPerLane
+ stats.pfPercentage = stats.calculatePercentagePF(stats.rawYieldSum, stats.pfYieldSum)
+ stats.pfYieldQ30Percentage = stats.calculateYieldQ30Percentage(stats.pfYieldQ30Sum, stats.pfYieldSum)
+ stats.pfmeanQualityScore = stats.calulateMeanQualityScore(stats.qualityScoreSum, stats.pfYieldSum)
+ stats.lane = listofSamples[0].Lane.values()[0]
+ stats.sampleName = listofSamples[0].Sample.values()[0]
+ index = listofSamples[0].Barcode.values()[0]
+ try:
+ stats.index1, stats.index2 = index.split("-")
+ except:
+ stats.index1 = index
+ return stats
+
+# -----------------------------------------------------------------------------
+
+
+def rawReadSumPerSamples(stat):
+ '''
+ Creates a dictionary with the lanes as keys
+ The values are a list where the elements are a dictionary again.
+ This dictionary has the sample names as key and the RawReadSum as value.
+
+ Example:
+ {4': [{'BSSE-QGF-3434_C0NKPACXX': 248999502}], '7': [{'lane7': 123921974},
+ {'BSSE-QGF-3527_C0NKPACXX': 38587703}, {'BSSE-QGF-3529_C0NKPACXX': 30130893},
+ {'BSSE-QGF-3528_C0NKPACXX': 34519296}, {'BSSE-QGF-3526_C0NKPACXX': 34980179}]}
+ '''
+
+ laneDict = {}
+ for e in stat:
+ if e.lane not in laneDict:
+ laneDict[e.lane] = [{e.sampleName:e.rawReadsSum}]
+ else:
+ laneDict[e.lane].append({e.sampleName:e.rawReadsSum})
+ return laneDict
+
+# -----------------------------------------------------------------------------
+
+def createSumRawReadsPerLane(laneDict):
+ '''
+ Creates a dictionary with lane as key and sum of Raw Reads as value:
+ {'1': 183180877, '3': 244968562, '2': 191496395, '5': 193466239, '4': 248999502,
+ '7': 262140045, '6': 257136830, '8': 209948449}
+ '''
+ sumRawReadsDict = {}
+ for lane in laneDict:
+ sumRawReads = 0
+ for sampleNameDict in laneDict[lane]:
+ sumRawReads += sampleNameDict.values()[0]
+
+ sumRawReadsDict[lane] = sumRawReads
+ return sumRawReadsDict
+
+# -----------------------------------------------------------------------------
+
+def createPercentagePerLane(laneDict, sumRawReadsDict):
+ '''
+ Creates a dictionary with the sample Name as key and the percentage of raw reads related to
+ all reads in the same lane
+ {'lane7': 47.27, 'BSSE-QGF-3433_C0NKPACXX': 100.0, 'BSSE-QGF-3666_C0NKPACXX': 54.12}
+ '''
+
+ relRawReadsDict = {}
+ for lane in laneDict:
+ for sampleName in laneDict[lane]:
+ relRawReadsDict[sampleName.keys()[0]] = round(float(sampleName.values()[0]) /
+ float(sumRawReadsDict[lane]) * 100, 2)
+ return relRawReadsDict
+
+# -----------------------------------------------------------------------------
+
+def locate(pattern, root):
+ '''Locate all files matching supplied filename pattern in and below
+ supplied root directory.'''
+ for path, dirs, files in os.walk(os.path.abspath(root)):
+ for filename in fnmatch.filter(files, pattern):
+ yield os.path.join(path, filename)
+
+# -----------------------------------------------------------------------------
+
+def getVocabulary(transaction, vocabularyCode):
+
+ vocabularyTermList = []
+ vocabulary = transaction.getSearchService().searchForVocabulary(vocabularyCode)
+ if (vocabulary is None):
+ print 'VOCABULARY %s does not exist' % (vocabularyCode)
+ else:
+ print "Getting VOCABULARY: " + vocabulary.getCode()
+ for term in vocabulary.getTerms():
+ vocabularyTermList.append(term.getCode())
+ vocabularyTermList.sort()
+ return vocabularyTermList
+
+# -----------------------------------------------------------------------------
+
+def getFlowCellMetaData (transaction,flowCellId):
+
+ def sortedDictValues(adict):
+ keys = adict.keys()
+ keys.sort()
+ return map(adict.get, keys)
+
+ search = transaction.getSearchService()
+ sc = SearchCriteria()
+ print('Searching FlowCell: '+ str(flowCellId))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search.searchForSamples(sc)
+
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + \
+ ' flow cells found which match the criterias: '+ flowCellId)
+
+ fcPropertiesDict = {}
+ fcPropertyTypes = []
+
+ fcProperties = foundFlowCells[0].getSample().getProperties()
+ for property in fcProperties:
+ code = property.getPropertyType().getSimpleCode()
+ fcPropertyTypes.append(code)
+ fcPropertiesDict[code] = property.getValue()
+
+ fcPropertyTypes.sort()
+ return fcPropertiesDict, fcPropertyTypes
+
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+ '''
+ Main
+ '''
+
+ FASTQ_DATA_SET_TYPE='FASTQ_GZ'
+ DEMUX_FILE='Flowcell_demux_summary.xml'
+ NO_INDEX='NOINDEX'
+ UNDETERMINED='UNDETERMINED'
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName()
+
+ print('\n'+time.ctime())
+
+ fcPropertiesDict, fcPropertyTypes = getFlowCellMetaData(transaction, name)
+ print fcPropertiesDict
+ print fcPropertyTypes
+
+ search_service = transaction.getSearchService()
+
+ FileGenerator= locate(DEMUX_FILE, incomingPath)
+ DEMULTIPLEX_XML = FileGenerator.next()
+
+ sampleList = xml2Memory(DEMULTIPLEX_XML)
+
+ sa = sample()
+ sampleDict = {}
+
+ # key = sample name, value = sample()
+ for element in range(0, len(sampleList)):
+ sa = sampleList[element]
+ # Check if new sample
+ if (sa.Sample is not sampleList[element - 1].Sample):
+ sampleName = sa.Sample.values()[0]
+ sampleDict[sampleName] = [sa]
+ else:
+ sampleDict[sampleName].append(sa)
+
+ stat = [calculateStatistics(sampleDict[mysample]) for mysample in sampleDict]
+
+ # calculate the relative amount of reads per index
+ laneDict = rawReadSumPerSamples(stat)
+ sumRawReadsDict = createSumRawReadsPerLane(laneDict)
+ relRawReadsDict = createPercentagePerLane(laneDict, sumRawReadsDict)
+
+ # set the values in the object
+ for mye in stat:
+ mye.rawPercentageReadsPerLane = relRawReadsDict[mye.sampleName]
+
+ def sampleSearch(Code=''):
+ sc = SearchCriteria()
+ numberOfLanes = 0
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, Code));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+ if foundSample.size() > 0:
+ # Search for contained samples
+ sampleSc = SearchCriteria()
+ sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc))
+ foundContainedSamples = search_service.searchForSamples(sampleSc)
+ numberOfLanes = foundContainedSamples.size()
+ return foundSample, foundContainedSamples, numberOfLanes
+
+#--------------------------------------------------------------------------------------------------------------------------------------
+
+ def searchDataSetsofSample(sample, index1, index2, DATA_SET_TYPE):
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+
+ dataSetSc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ #dataSetSc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE))
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("BARCODE", index1 ))
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("INDEX2", index2))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ print "foundDataSets.size() "+ str(foundDataSets.size())
+ for ds in foundDataSets:
+ print "Index1 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('BARCODE')
+ print "Index2 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('INDEX2')
+
+ return foundDataSets
+
+#--------------------------------------------------------------------------------------------------------------------------------------
+
+ def getIndexesofDataSetsofSample(sample, DATA_SET_TYPE):
+
+ index1List = []
+ index2List = []
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+
+ dataSetSc = SearchCriteria()
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ for ds in foundDataSets:
+ index1List.append(ds.getPropertyValue('BARCODE'))
+ index2List.append(ds.getPropertyValue('INDEX2'))
+ return index1List, index2List
+
+
+ flowcell, lanes, numberOfLanes = sampleSearch(name)
+
+ index1Length = fcPropertiesDict['INDEXREAD']
+ index2Length = fcPropertiesDict['INDEXREAD2']
+
+ for mystat in stat:
+ laneCode = flowcell[0].getCode() + ":" + mystat.lane
+ searchIndex1 = mystat.index1.upper()
+ searchIndex2 = mystat.index2.upper()
+ print '\n'
+ print mystat
+
+ index1List, index2List = getIndexesofDataSetsofSample(laneCode, FASTQ_DATA_SET_TYPE)
+ print "Searching for "+ searchIndex1 + " in " + str(index1List)
+ print "Searching for "+ searchIndex2 + " in " + str(index2List)
+
+ if searchIndex1 not in (NO_INDEX):
+ if searchIndex1 not in (UNDETERMINED):
+ if index1Length > 7:
+ searchIndex1List = [ index1 for index1 in index1List if searchIndex1 in index1]
+ else:
+ searchIndex1List = [ index1 for index1 in index1List if searchIndex1 in index1[:-2]]
+ try:
+ if len(searchIndex1List) > 1:
+ if searchIndex1List[0].startswith(searchIndex1):
+ searchIndex1 = searchIndex1List[0]
+ else:
+ searchIndex1 = searchIndex1List[1]
+ else:
+ searchIndex1 = searchIndex1List[0]
+ print searchIndex1
+ except:
+ searchIndex1 = 'MISSING'
+ else:
+ searchIndex1 = NO_INDEX
+ if searchIndex2 not in (NO_INDEX):
+ if searchIndex2 not in (UNDETERMINED):
+ if index2Length > 7:
+ searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2]
+ else:
+ searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2[:-2]]
+ try:
+ searchIndex2 = searchIndex2[0]
+ except:
+ searchIndex1 = 'MISSING'
+ else:
+ searchIndex2 = NO_INDEX
+
+ print "searchIndex1 " + str(searchIndex1)
+ print "searchIndex2 " + str(searchIndex2)
+
+ # Search for a data set with those two indices
+ DataSet = searchDataSetsofSample(laneCode, searchIndex1, searchIndex2, FASTQ_DATA_SET_TYPE)
+ try:
+ assert DataSet.size() == 1
+ except AssertionError:
+ print (str(DataSet.size()) + ' data sets found which match the criterias: '+
+ str(laneCode), searchIndex1, searchIndex2)
+ continue
+
+ sa = transaction.getDataSetForUpdate(DataSet[0].getDataSetCode())
+ sa.setPropertyValue('YIELD_MBASES', str(mystat.pfYieldSum))
+ sa.setPropertyValue('RAW_YIELD_MBASES', str(mystat.rawYieldSum))
+ sa.setPropertyValue('PERCENTAGE_PASSED_FILTERING',str(mystat.pfPercentage))
+ sa.setPropertyValue('PF_READS_SUM',str(mystat.pfReadsSum))
+ sa.setPropertyValue('RAW_READS_SUM',str(mystat.rawReadsSum))
+ sa.setPropertyValue('PERCENTAGE_RAW_CLUSTERS_PER_LANE', str(mystat.rawPercentageReadsPerLane))
+ sa.setPropertyValue('PFYIELDQ30PERCENTAGE', str(mystat.pfYieldQ30Percentage))
+ sa.setPropertyValue('PFMEANQUALITYSCORE', str(mystat.pfmeanQualityScore))
+
+ print "Modified data sets properties of: " + DataSet[0].getDataSetCode()
+
+ print "DONE"
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties
new file mode 100644
index 00000000000..1337bde948b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/plugin.properties
@@ -0,0 +1,10 @@
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/read-demultiplex-stats
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = read-demultiplex-stats.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py
new file mode 100755
index 00000000000..b6c0cc3a544
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-demultiplex-stats/read-demultiplex-stats.py
@@ -0,0 +1,544 @@
+'''
+ @copyright: 2012 ETH Zuerich, CISD
+
+ @license:
+ Licensed under the Apache License, Version 2.0 (the "License");
+ you may not use this file except in compliance with the License.
+ You may obtain a copy of the License at
+
+ http://www.apache.org/licenses/LICENSE-2.0
+
+ Unless required by applicable law or agreed to in writing, software
+ distributed under the License is distributed on an "AS IS" BASIS,
+ WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ See the License for the specific language governing permissions and
+ limitations under the License.
+
+
+@author: Manuel Kohler
+
+XML Structur which is processed:
+
+<?xml version="1.0"?>
+<Summary>
+ <Lane index="8">
+ <Sample index="lane8">
+ <Barcode index="Undetermined">
+ <Tile index="1101">
+ <Read index="1">
+ <Raw>
+ <Yield>1921250</Yield>
+ <YieldQ30>949680</YieldQ30>
+ <ClusterCount>38425</ClusterCount>
+ <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode>
+ <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode>
+ <QualityScoreSum>40995660</QualityScoreSum>
+ </Raw>
+ <Pf>
+ <Yield>945450</Yield>
+ <YieldQ30>854815</YieldQ30>
+ <ClusterCount>18909</ClusterCount>
+ <ClusterCount0MismatchBarcode>0</ClusterCount0MismatchBarcode>
+ <ClusterCount1MismatchBarcode>0</ClusterCount1MismatchBarcode>
+ <QualityScoreSum>33815505</QualityScoreSum>
+ </Pf>
+ </Read>
+ </Tile>
+ [...]
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+'''
+
+import time
+import os
+import fnmatch
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+
+class parseXmlFile:
+
+ def __init__(self, xmlFile):
+ self.xmlFile = xmlFile
+ self.tree = etree.parse(self.xmlFile)
+ self.root = self.tree.getroot()
+
+# -----------------------------------------------------------------------------
+
+class qcValues(object):
+ def __init__(self, Yield = 0, YieldQ30 = 0, ClusterCount = 0,
+ ClusterCount0MismatchBarcode = 0, ClusterCount1MismatchBarcode = 0,
+ QualityScoreSum = 0, *args, **kwargs):
+ self.Yield = Yield
+ self.YieldQ30 = YieldQ30
+ self.ClusterCount = ClusterCount
+ self.ClusterCount0MismatchBarcode = ClusterCount0MismatchBarcode
+ self.ClusterCount1MismatchBarcode = ClusterCount1MismatchBarcode
+ self.QualityScoreSum = QualityScoreSum
+
+ def __str__(self):
+ return "Yield: %s, YieldQ30: %s, ClusterCount: %s, ClusterCount0MismatchBarcode: %s," \
+ " CusterCount1MismatchBarcode: %s, QualityScoreSum: %s" \
+ % (self.Yield, self.YieldQ30, self.ClusterCount, self.ClusterCount0MismatchBarcode,
+ self.ClusterCount1MismatchBarcode, self.QualityScoreSum)
+
+class sample:
+ def __init__(self, Lane = 0, Sample = '', Barcode = '', Tile = '', Read = '', rawqc = qcValues([]),
+ pfqc = qcValues([]), *args, **kwargs):
+ self.Lane = Lane
+ self.Sample = Sample
+ self.Barcode = Barcode
+ self.Tile = Tile
+ self.Read = Read
+ self.rawqc = rawqc
+ self.pfqc = pfqc
+
+ def __str__(self):
+ return "Lane: %s, Sample: %s, Barcode: %s, Tile: %s, Read: %s, rawqc: %s, pfqc: %s" \
+ % (self.Lane, self.Sample, self.Barcode, self.Tile, self.Read, self.rawqc, self.pfqc)
+
+# -----------------------------------------------------------------------------
+
+class Statistics:
+ def __init__(self, lane = 0, sampleName = "", index1 = "NoIndex", index2 = "NoIndex", pfYieldSum = 0,
+ rawYieldSum = 0, pfPercentage = 0.0, rawReadsSum = 0, pfReadsSum = 0,
+ pfYieldQ30Sum = 0, qualityScoreSum = 0, rawPercentageReadsPerLane = 0.0,
+ pfYieldQ30Percentage = 0.0, pfsumQualityScore = 0, pfmeanQualityScore = 0.0):
+ self.lane = lane
+ self.sampleName = sampleName
+ self.index1 = index1
+ self.index2 = index2
+ self.pfYieldSum = pfYieldSum
+ self.rawYieldSum = rawYieldSum
+ self.pfPercentage = pfPercentage
+ self.rawReadsSum = rawReadsSum
+ self.pfReadsSum = pfReadsSum
+ self.pfYieldQ30Sum = pfYieldQ30Sum
+ self.qualityScoreSum = qualityScoreSum
+ self.rawPercentageReadsPerLane = rawPercentageReadsPerLane
+ self.pfYieldQ30Percentage = pfYieldQ30Percentage
+ self.pfsumQualityScore = pfsumQualityScore
+ self.pfmeanQualityScore = pfmeanQualityScore
+
+ def __str__(self):
+ return "lane: %s, sampleName: %s, index1: %s, index2: %s, pfYieldSum: %s, pfPercentage: %s," \
+ " rawReadsSum: %s, pfReadsSum: %s," \
+ " rawPercentageReadsPerLane: %s, pfYieldQ30Percentage: %s," \
+ " pfmeanQualityScore: %s" \
+ % (self.lane, self.sampleName, self.index1, self.index2, self.pfYieldSum, self.pfPercentage,
+ self.rawReadsSum, self.pfReadsSum,
+ self.rawPercentageReadsPerLane, self.pfYieldQ30Percentage, self.pfmeanQualityScore)
+
+ def calculatePercentagePF (self, rawYield = 0, pfYield = 1):
+ try:
+ return round(float(pfYield) / float(rawYield) * 100, 2)
+ except:
+ return 0.0
+
+ def calulateMeanQualityScore (self, pfqualityScoreSum = 0, pfYield = 1):
+ try:
+ return round (float(pfqualityScoreSum) / float(pfYield), 2)
+ except:
+ return 0.0
+
+ def calculateYieldQ30Percentage (self, pfYieldQ30 = 0, pfYield = 1):
+ try:
+ return round (float(pfYieldQ30) / float(pfYield) * 100, 2)
+ except:
+ return 0.0
+
+# -----------------------------------------------------------------------------
+
+def xml2Memory(DEMULTIPLEX_XML):
+ '''
+ Parse the XML file and put all values in a memory structure:
+ List of:
+ lane, sample, barcode, tile, read, qcRawList, qcPfList
+ '''
+
+ RAW_TAG = "Raw"
+ PF_TAG = "Pf"
+
+ sampleList = []
+
+ xml = parseXmlFile(DEMULTIPLEX_XML)
+ r = xml.tree.getroot()
+
+ for lane in r.getchildren():
+ for mysample in lane:
+ for barcode in mysample:
+ for tile in barcode:
+ for read in tile:
+
+ qcRaw = qcValues()
+ qcPf = qcValues()
+ qcRawList = []
+ qcPfList = []
+
+ # Read out the Raw fields
+ raw = read.find(RAW_TAG)
+ for child in raw.getchildren():
+ # equivalent to a Java reflection
+ setattr(qcRaw, child.tag, int(child.text))
+
+ # Read out the Pf fields
+ pf = read.find(PF_TAG)
+ for child in pf.getchildren():
+ # equivalent to a Java reflection
+ setattr(qcPf, child.tag, int(child.text))
+
+ qcRawList.append(qcRaw)
+ qcPfList.append(qcPf)
+
+ singleElement = sample ()
+
+ setattr(singleElement, lane.tag, lane.attrib)
+ setattr(singleElement, mysample.tag, mysample.attrib)
+ setattr(singleElement, barcode.tag, barcode.attrib)
+ setattr(singleElement, tile.tag, tile.attrib)
+ setattr(singleElement, read.tag, read.attrib)
+ singleElement.rawqc = qcRawList
+ singleElement.pfqc = qcPfList
+
+ sampleList.append(singleElement)
+ return sampleList
+
+# -----------------------------------------------------------------------------
+
+def calculateStatistics(listofSamples):
+ '''
+ Structure of 'listofSamples'
+ Lane: {'index': '6'}, Sample: {'index': 'BSSE-QGF-3524_C0NKPACXX'}, Barcode: {'index': 'TGACCA'},
+ Tile: {'index': '2307'}, Read: {'index': '1'}, rawqc:<mem>, pfqc:<mem>
+ '''
+
+ numberOfTiles = len(listofSamples)
+
+ tile = sample()
+ raw = qcValues ()
+ pf = qcValues ()
+ stats = Statistics()
+
+ for tile in listofSamples:
+ raw = tile.rawqc[0]
+ pf = tile.pfqc[0]
+
+ stats.pfYieldSum += pf.Yield
+ stats.rawYieldSum += raw.Yield
+ stats.rawReadsSum += raw.ClusterCount
+ stats.pfReadsSum += pf.ClusterCount
+ stats.pfYieldQ30Sum += pf.YieldQ30
+ stats.qualityScoreSum += pf.QualityScoreSum
+
+ # Can not be set here, needs to be calculated later
+ #stats.rawPercentageReadsPerLane = rawPercentageReadsPerLane
+ stats.pfPercentage = stats.calculatePercentagePF(stats.rawYieldSum, stats.pfYieldSum)
+ stats.pfYieldQ30Percentage = stats.calculateYieldQ30Percentage(stats.pfYieldQ30Sum, stats.pfYieldSum)
+ stats.pfmeanQualityScore = stats.calulateMeanQualityScore(stats.qualityScoreSum, stats.pfYieldSum)
+ stats.lane = listofSamples[0].Lane.values()[0]
+ stats.sampleName = listofSamples[0].Sample.values()[0]
+ index = listofSamples[0].Barcode.values()[0]
+ try:
+ stats.index1, stats.index2 = index.split("-")
+ except:
+ stats.index1 = index
+ return stats
+
+# -----------------------------------------------------------------------------
+
+
+def rawReadSumPerSamples(stat):
+ '''
+ Creates a dictionary with the lanes as keys
+ The values are a list where the elements are a dictionary again.
+ This dictionary has the sample names as key and the RawReadSum as value.
+
+ Example:
+ {4': [{'BSSE-QGF-3434_C0NKPACXX': 248999502}], '7': [{'lane7': 123921974},
+ {'BSSE-QGF-3527_C0NKPACXX': 38587703}, {'BSSE-QGF-3529_C0NKPACXX': 30130893},
+ {'BSSE-QGF-3528_C0NKPACXX': 34519296}, {'BSSE-QGF-3526_C0NKPACXX': 34980179}]}
+ '''
+
+ laneDict = {}
+ for e in stat:
+ if e.lane not in laneDict:
+ laneDict[e.lane] = [{e.sampleName:e.rawReadsSum}]
+ else:
+ laneDict[e.lane].append({e.sampleName:e.rawReadsSum})
+ return laneDict
+
+# -----------------------------------------------------------------------------
+
+def createSumRawReadsPerLane(laneDict):
+ '''
+ Creates a dictionary with lane as key and sum of Raw Reads as value:
+ {'1': 183180877, '3': 244968562, '2': 191496395, '5': 193466239, '4': 248999502,
+ '7': 262140045, '6': 257136830, '8': 209948449}
+ '''
+ sumRawReadsDict = {}
+ for lane in laneDict:
+ sumRawReads = 0
+ for sampleNameDict in laneDict[lane]:
+ sumRawReads += sampleNameDict.values()[0]
+
+ sumRawReadsDict[lane] = sumRawReads
+ return sumRawReadsDict
+
+# -----------------------------------------------------------------------------
+
+def createPercentagePerLane(laneDict, sumRawReadsDict):
+ '''
+ Creates a dictionary with the sample Name as key and the percentage of raw reads related to
+ all reads in the same lane
+ {'lane7': 47.27, 'BSSE-QGF-3433_C0NKPACXX': 100.0, 'BSSE-QGF-3666_C0NKPACXX': 54.12}
+ '''
+
+ relRawReadsDict = {}
+ for lane in laneDict:
+ for sampleName in laneDict[lane]:
+ relRawReadsDict[sampleName.keys()[0]] = round(float(sampleName.values()[0]) /
+ float(sumRawReadsDict[lane]) * 100, 2)
+ return relRawReadsDict
+
+# -----------------------------------------------------------------------------
+
+def locate(pattern, root):
+ '''Locate all files matching supplied filename pattern in and below
+ supplied root directory.'''
+ for path, dirs, files in os.walk(os.path.abspath(root)):
+ for filename in fnmatch.filter(files, pattern):
+ yield os.path.join(path, filename)
+
+# -----------------------------------------------------------------------------
+
+def getVocabulary(transaction, vocabularyCode):
+
+ vocabularyTermList = []
+ vocabulary = transaction.getSearchService().searchForVocabulary(vocabularyCode)
+ if (vocabulary is None):
+ print 'VOCABULARY %s does not exist' % (vocabularyCode)
+ else:
+ print "Getting VOCABULARY: " + vocabulary.getCode()
+ for term in vocabulary.getTerms():
+ vocabularyTermList.append(term.getCode())
+ vocabularyTermList.sort()
+ return vocabularyTermList
+
+# -----------------------------------------------------------------------------
+
+def getFlowCellMetaData (transaction,flowCellId):
+
+ def sortedDictValues(adict):
+ keys = adict.keys()
+ keys.sort()
+ return map(adict.get, keys)
+
+ search = transaction.getSearchService()
+ sc = SearchCriteria()
+ print('Searching FlowCell: '+ str(flowCellId))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search.searchForSamples(sc)
+
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + \
+ ' flow cells found which match the criterias: '+ flowCellId)
+
+ fcPropertiesDict = {}
+ fcPropertyTypes = []
+
+ fcProperties = foundFlowCells[0].getSample().getProperties()
+ for property in fcProperties:
+ code = property.getPropertyType().getSimpleCode()
+ fcPropertyTypes.append(code)
+ fcPropertiesDict[code] = property.getValue()
+
+ fcPropertyTypes.sort()
+ return fcPropertiesDict, fcPropertyTypes
+
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+ '''
+ Main
+ '''
+
+ FASTQ_DATA_SET_TYPE='FASTQ_GZ'
+ DEMUX_FILE='Flowcell_demux_summary.xml'
+ NO_INDEX='NOINDEX'
+ UNDETERMINED='UNDETERMINED'
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName().split('-')[0]
+
+ print('\n'+time.ctime())
+
+ fcPropertiesDict, fcPropertyTypes = getFlowCellMetaData(transaction, name)
+ print fcPropertiesDict
+ print fcPropertyTypes
+
+ search_service = transaction.getSearchService()
+
+ FileGenerator= locate(DEMUX_FILE, incomingPath)
+ DEMULTIPLEX_XML = FileGenerator.next()
+
+ sampleList = xml2Memory(DEMULTIPLEX_XML)
+
+ sa = sample()
+ sampleDict = {}
+ print ("Length Sample List: " + str(len(sampleList)))
+
+ # key = sample name, value = sample()
+ for element in range(0, len(sampleList)):
+ sa = sampleList[element]
+ # Check if new sample
+ if (sa.Sample is not sampleList[element - 1].Sample):
+ sampleName = sa.Sample.values()[0]
+ sampleDict[sampleName] = [sa]
+ print(sampleName)
+ else:
+ try:
+ sampleDict[sampleName].append(sa)
+ except:
+ sampleName = sa.Sample.values()[0]
+ sampleDict[sampleName] = [sa]
+
+ stat = [calculateStatistics(sampleDict[mysample]) for mysample in sampleDict]
+
+ # calculate the relative amount of reads per index
+ laneDict = rawReadSumPerSamples(stat)
+ sumRawReadsDict = createSumRawReadsPerLane(laneDict)
+ relRawReadsDict = createPercentagePerLane(laneDict, sumRawReadsDict)
+
+ # set the values in the object
+ for mye in stat:
+ mye.rawPercentageReadsPerLane = relRawReadsDict[mye.sampleName]
+
+ def sampleSearch(Code=''):
+ sc = SearchCriteria()
+ numberOfLanes = 0
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, Code));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+ if foundSample.size() > 0:
+ # Search for contained samples
+ sampleSc = SearchCriteria()
+ sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc))
+ foundContainedSamples = search_service.searchForSamples(sampleSc)
+ numberOfLanes = foundContainedSamples.size()
+ return foundSample, foundContainedSamples, numberOfLanes
+
+#--------------------------------------------------------------------------------------------------------------------------------------
+
+ def searchDataSetsofSample(sample, index1, index2, DATA_SET_TYPE):
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+
+ dataSetSc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ #dataSetSc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE))
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("BARCODE", index1 ))
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createPropertyMatch("INDEX2", index2))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ print "foundDataSets.size() "+ str(foundDataSets.size())
+ for ds in foundDataSets:
+ print "Index1 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('BARCODE')
+ print "Index2 for found Data Set" + ds.getDataSetCode() + " " + ds.getPropertyValue('INDEX2')
+
+ return foundDataSets
+
+#--------------------------------------------------------------------------------------------------------------------------------------
+
+ def getIndexesofDataSetsofSample(sample, DATA_SET_TYPE):
+
+ index1List = []
+ index2List = []
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample));
+ search_service = transaction.getSearchService()
+ foundSample = search_service.searchForSamples(sc)
+
+ dataSetSc = SearchCriteria()
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DATA_SET_TYPE))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ for ds in foundDataSets:
+ index1List.append(ds.getPropertyValue('BARCODE'))
+ index2List.append(ds.getPropertyValue('INDEX2'))
+ return index1List, index2List
+
+
+ flowcell, lanes, numberOfLanes = sampleSearch(name)
+
+ index1Length = fcPropertiesDict['INDEXREAD']
+ index2Length = fcPropertiesDict['INDEXREAD2']
+
+ for mystat in stat:
+ laneCode = flowcell[0].getCode() + ":" + mystat.lane
+ searchIndex1 = mystat.index1.upper()
+ searchIndex2 = mystat.index2.upper()
+ print '\n'
+ print mystat
+
+ index1List, index2List = getIndexesofDataSetsofSample(laneCode, FASTQ_DATA_SET_TYPE)
+ print "Searching for "+ searchIndex1 + " in " + str(index1List)
+ print "Searching for "+ searchIndex2 + " in " + str(index2List)
+
+ if searchIndex1 not in (NO_INDEX):
+ if searchIndex1 not in (UNDETERMINED):
+ if index1Length > 7:
+ searchIndex1 = [ index1 for index1 in index1List if searchIndex1 in index1]
+ else:
+ searchIndex1 = [ index1 for index1 in index1List if searchIndex1 in index1[:-1]]
+ try:
+ searchIndex1 = searchIndex1[0]
+ except:
+ searchIndex1 = 'MISSING'
+ else:
+ searchIndex1 = NO_INDEX
+ if searchIndex2 not in (NO_INDEX):
+ if searchIndex2 not in (UNDETERMINED):
+ if index2Length > 7:
+ searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2]
+ else:
+ searchIndex2 = [ index2 for index2 in index2List if searchIndex2 in index2[:-1]]
+ try:
+ searchIndex2 = searchIndex2[0]
+ except:
+ searchIndex1 = 'MISSING'
+ else:
+ searchIndex2 = NO_INDEX
+
+ print "searchIndex1 " + str(searchIndex1)
+ print "searchIndex2 " + str(searchIndex2)
+
+ # Search for a data set with those two indices
+ DataSet = searchDataSetsofSample(laneCode, searchIndex1, searchIndex2, FASTQ_DATA_SET_TYPE)
+ try:
+ assert DataSet.size() == 1
+ except AssertionError:
+ print (str(DataSet.size()) + ' data sets found which match the criterias: '+
+ str(laneCode), searchIndex1, searchIndex2)
+ continue
+
+ sa = transaction.getDataSetForUpdate(DataSet[0].getDataSetCode())
+ sa.setPropertyValue('YIELD_MBASES', str(mystat.pfYieldSum))
+ sa.setPropertyValue('RAW_YIELD_MBASES', str(mystat.rawYieldSum))
+ sa.setPropertyValue('PERCENTAGE_PASSED_FILTERING',str(mystat.pfPercentage))
+ sa.setPropertyValue('PF_READS_SUM',str(mystat.pfReadsSum))
+ sa.setPropertyValue('RAW_READS_SUM',str(mystat.rawReadsSum))
+ sa.setPropertyValue('PERCENTAGE_RAW_CLUSTERS_PER_LANE', str(mystat.rawPercentageReadsPerLane))
+ sa.setPropertyValue('PFYIELDQ30PERCENTAGE', str(mystat.pfYieldQ30Percentage))
+ sa.setPropertyValue('PFMEANQUALITYSCORE', str(mystat.pfmeanQualityScore))
+
+ print "Modified data sets properties of: " + DataSet[0].getDataSetCode()
+
+ print "DONE"
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/plugin.properties
new file mode 100644
index 00000000000..ef56111b768
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/read-rta-timestamp
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = read-rta-timestamp.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py
new file mode 100644
index 00000000000..c701f27f3d6
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/read-rta-timestamp/read-rta-timestamp.py
@@ -0,0 +1,49 @@
+import os
+import shutil
+from time import *
+from datetime import *
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+MarkerGAComplete = 'RTAComplete.txt'
+MarkerHiSeqComplete = 'RTAComplete.txt'
+MarkerNextSeqComplete = 'RTAComplete.txt'
+
+def createOpenbisTimeStamp(file):
+ '''
+ Creates a openBIS compatible time stamp of a file time stamp
+ '''
+ mtime = os.path.getmtime(file)
+ lt = localtime(mtime)
+ tz = localtime().tm_hour - gmtime().tm_hour
+ return (strftime("%Y-%m-%d %H:%M:%S GMT" + "%+.2d" % tz + ":00", lt))
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getAbsolutePath()
+ # Get the incoming name
+ name = transaction.getIncoming().getName()
+
+ split=name.split("_")
+ if (len(split) == 4):
+ if (split[1].startswith("NS")):
+ Markerfile = incomingPath + "/" + MarkerNextSeqComplete
+ name = split[-1][1:]
+ else:
+ IS_HISEQ_RUN=True
+ Markerfile = incomingPath + "/" + MarkerHiSeqComplete
+ if (len(split) == 2):
+ Markerfile = incomingPath + "/" + MarkerGAComplete
+
+ # Search for the sample and check if there is already sample with this name
+ search_service = transaction.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name));
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ sa = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier())
+ sa.setPropertyValue("SEQUENCER_FINISHED", createOpenbisTimeStamp(Markerfile))
+
+ shutil.rmtree(incomingPath)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/plugin.properties
new file mode 100644
index 00000000000..d6e67945db5
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-basecall-stats
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-basecall-stats.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py
new file mode 100644
index 00000000000..34ff5e55af1
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-basecall-stats/register-basecall-stats.py
@@ -0,0 +1,51 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+
+@author:
+Manuel Kohler
+'''
+
+import os
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ runFolder = transaction.getIncoming().getName()
+ flowCellId = runFolder.split("_")[-1][1:]
+
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("NEXTSEQ_BASECALL_STATS")
+ dataSet.setMeasuredData(False)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId))
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ dataSet.setSample(foundSamples[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/plugin.properties
new file mode 100644
index 00000000000..2ee11974590
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${root}/dss/register-bee
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-bee.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/register-bee.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/register-bee.py
new file mode 100644
index 00000000000..65def2a0afb
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bee/register-bee.py
@@ -0,0 +1,64 @@
+from __future__ import with_statement
+import os
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.common.mail import EMailAddress
+
+def process (transaction):
+
+
+ DATA_SET_TYPE_ALIGNMENT = "ALIGNMENT"
+ ETHZ_DOMAIN = "@ethz.ch"
+ METADATA_FILE='metadata.properties'
+
+ def searchDs(transaction, dscode):
+ # search for the data set
+ search_service = transaction.getSearchService();
+ sc = SearchCriteria();
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, dscode));
+ myds = search_service.searchForDataSets(sc);
+ assert (myds.size() == 1);
+ return myds;
+
+ # Search for parent data set of the same sample
+ #dataSetSc = SearchCriteria()
+ #dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, 'FASTQ_GZ'))
+ #dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ #foundDataSets = search_service.searchForDataSets(dataSetSc)
+ #if foundDataSets.size() > 0:
+ # dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets])
+
+ path = transaction.getIncoming().getAbsolutePath()
+
+ myvars = {}
+ with open(os.path.join(path, METADATA_FILE)) as myfile:
+ for line in myfile:
+ name, var = line.partition("=")[::2]
+ myvars[name.strip()] = var
+ print myvars
+ userId = myvars['analysis_procedure'].split()[-1][1:-1]
+ dsCode = myvars['storage_provider.parent.dataset.id']
+ print userId
+ print dsCode
+
+ if (not "@" in userId):
+ userId = userId + ETHZ_DOMAIN;
+
+ userMail = EMailAddress(userId)
+
+ existingDs = searchDs(transaction, dsCode);
+ print existingDs
+ firstDs = existingDs.get(0);
+
+ newDataSet = transaction.createNewDataSet(DATA_SET_TYPE_ALIGNMENT);
+ experiment = firstDs.getExperiment();
+
+ newDataSet.setParentDatasets([ds.getDataSetCode() for ds in existingDs])
+ newDataSet.setExperiment(experiment);
+ transaction.moveFile(transaction.getIncoming().getAbsolutePath(), newDataSet);
+
+ replyTo = EMailAddress("no-reply@bsse.ethz.ch")
+ fromAddress = replyTo
+
+ # transaction.getGlobalState().getMailClient().sendEmailMessage(subject, content, replyToOrNull, fromOrNull, recipients)
+ transaction.getGlobalState().getMailClient().sendEmailMessage("openBIS Bee cluster job finished",
+ "Result data for " + dsCode + " got registered in openBIS.", replyTo, fromAddress, userMail);
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/plugin.properties
new file mode 100644
index 00000000000..26d6bb1da8d
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/plugin.properties
@@ -0,0 +1,10 @@
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-bigwig/
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-bigwig.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/register-bigwig.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/register-bigwig.py
new file mode 100755
index 00000000000..31a0863709f
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bigwig/register-bigwig.py
@@ -0,0 +1,140 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX
+expected incoming Name for GAII runs: 110812_6353WAAXX
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import fnmatch
+import re
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+FOLDER='/links/shared/dsu/dss/register-bigwig/'
+BIGWIGINFO='/links/application/dsu/bigWig/bigWigInfo '
+BW_PATTERN='*.bw'
+
+matches = []
+
+# -----------------------------------------------------------------------------
+
+def listSearch (myList, searchString):
+ '''
+ Searches for a given String in a list.
+ Only lines matching the start of a line a considerd as a match
+ '''
+ matches = []
+ for i in range (0, len(myList)):
+ if(re.match(searchString, myList[i])):
+ matches.append(myList[i])
+ return (matches)
+
+# -----------------------------------------------------------------------------
+
+def translateBoolean (value):
+ if (value.lower() == 'yes') | (value.lower() =='y'):
+ return True
+ else:
+ return False
+
+def sanitizeInt (intNumber):
+ return intNumber.replace(',','')
+
+# -----------------------------------------------------------------------------
+
+def convertListToDict(prop):
+ d={}
+ for i in range(0,len(prop)-1):
+ lineSplit = prop[i].split(':')
+ d[lineSplit[0].strip()] = lineSplit[1].strip()
+ return(d)
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName()
+
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("BIGWIGGLE")
+ dataSet.setMeasuredData(False)
+
+ # expected:
+ # Project_110907_SN792_0059_AC012FACXX_3/BSSE-DSU-1662_CGATGTA_L003_R1_001_sorted.bw
+ split=name.split('_')
+ if (len(split) == 6):
+ incoming_sample=split[1]+ '_'+ split[2] + '_' + split[3] + '_' + split[4]+ ':' + split[-1]
+ if (len(split) ==4):
+ incoming_sample=split[1]+ '_'+ split[2] + ':' + split[-1]
+
+ # Looking for BWs:
+ for root, dirnames, filenames in os.walk(FOLDER + name):
+ for filename in fnmatch.filter(filenames, BW_PATTERN):
+ matches.append(os.path.join(root, filename))
+
+ # Extract values from a samtools view and set the results as DataSet properties
+ # Command: samtools view -H ETHZ_BSSE_110429_63558AAXX_1_sorted.bam
+
+ arguments = BIGWIGINFO + matches[0]
+ #print('Arguments: '+ arguments)
+ cmdResult=os.popen(arguments).read()
+
+ properties=cmdResult.split("\n")
+ dictProp = convertListToDict(properties)
+ #print(dictProp)
+
+ dataSet.setPropertyValue("VERSION", dictProp['version'])
+ dataSet.setPropertyValue("ISCOMPRESSED", str(translateBoolean(dictProp['isCompressed'])))
+ dataSet.setPropertyValue("ISSWAPPED", dictProp['isSwapped'])
+ dataSet.setPropertyValue("PRIMARYDATASIZE", sanitizeInt(dictProp['primaryDataSize']))
+ dataSet.setPropertyValue("PRIMARYINDEXSIZE", sanitizeInt(dictProp['primaryIndexSize']))
+ dataSet.setPropertyValue("ZOOMLEVELS", dictProp['zoomLevels'])
+ dataSet.setPropertyValue("CHROMCOUNT", dictProp['chromCount'])
+ dataSet.setPropertyValue("BASESCOVERED", sanitizeInt(dictProp['basesCovered']))
+ dataSet.setPropertyValue("MEAN", dictProp['mean'])
+ dataSet.setPropertyValue("MIN", dictProp['min'])
+ dataSet.setPropertyValue("MAX", dictProp['max'])
+ dataSet.setPropertyValue("STD", dictProp['std'])
+
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample));
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ dataSet.setSample(foundSamples[0])
+
+ # Search for parent data set of the same sample
+ dataSetSc = SearchCriteria()
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, 'FASTQ_GZ'))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ if foundDataSets.size() > 0:
+ dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/plugin.properties
new file mode 100644
index 00000000000..f0fac2c142a
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-bowtie
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-bowtie.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/register-bowtie.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/register-bowtie.py
new file mode 100644
index 00000000000..0e8f218b29b
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-bowtie/register-bowtie.py
@@ -0,0 +1,40 @@
+'''
+This is handling bowtie-BAM files and extracts some properties from the BAM header and
+the samtools flagstat command. The results are formatted and attached as a property
+to the openBIS DataSet.
+Prerequisites are the DataSetType: ALIGNMENT and
+the following properties assigned to the DataSetType mentioned above:
+ALIGNMENT_SOFTWARE, ISSUED_COMMAND, SAMTOOLS_FLAGSTAT,
+TOTAL_READS, MAPPED_READS
+
+Obviously you need a working samtools binary
+
+Uses 'flagstat' and 'view -H'
+'''
+
+import os
+import fnmatch
+import re
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+FOLDER='/links/shared/dsu/dss/register-bowtie/'
+SAMTOOLS='/links/application/dsu/samtools/samtools'
+BAM_PATTERN='*.bam'
+
+matches = []
+searchStrings = ['@PG']
+programList = []
+
+# -----------------------------------------------------------------------------
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getName()
+
+ dataSet = transaction.createNewDataSet("ALIGNMENT")
+ dataSet.setMeasuredData(False)
+
+ matches.append(incomingPath)
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/AlignmentJavaDataSetRegistrationDropboxV2.jar b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/AlignmentJavaDataSetRegistrationDropboxV2.jar
new file mode 100644
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/alignment.jar.sv2 b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/lib/alignment.jar.sv2
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/plugin.properties
new file mode 100644
index 00000000000..35b2b5253d0
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-cluster-alignment-java/plugin.properties
@@ -0,0 +1,7 @@
+incoming-dir = ${root}/dss/register-cluster-alignment-java
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JavaTopLevelDataSetHandlerV2
+program-class = ch.systemsx.cisd.etlserver.registrator.api.v2.AlignmentJavaDataSetRegistrationDropboxV2
+#program-class = AlignmentJavaDataSetRegistrationDropboxV2
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+incoming-dir-create = true
+incoming-data-completeness-condition = auto-detection
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/plugin.properties
new file mode 100644
index 00000000000..353a2b7aa8a
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-fastqc
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-fastqc.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/register-fastqc.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/register-fastqc.py
new file mode 100644
index 00000000000..d538798b932
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-fastqc/register-fastqc.py
@@ -0,0 +1,82 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@note
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+Expects as incoming folder: Project_120427_SN792_0110_AD0YCGACXX_1
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+def renameFiles(dir, flowcellName):
+ print dir
+ print flowcellName
+ for root, dirs, files in os.walk(dir):
+ for file in files:
+ print root + file
+ os.rename(root + '/' + file, root + "/" + flowcellName + "_" + file)
+
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ incomingFolder = transaction.getIncoming().getName()
+
+ if (len(incomingFolder.split("_")) == 2):
+ flowCell, flowLane = incomingFolder.split("_")
+ else:
+ fcAndLane = incomingFolder.split("_",1)[-1]
+ flowCell, flowLane = fcAndLane.rsplit("_",1)
+
+ nameLength = len(flowCell.split('_'))
+ if nameLength == 5:
+ flowCell = '-'.join(flowCell.rsplit('_',1))
+
+ print flowCell
+ print flowLane
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCell))
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+
+ # Search for another data set of the same sample and make it a child of it
+ sampleSc = SearchCriteria()
+ sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc))
+ foundContainedSamples = search_service.searchForSamples(sampleSc)
+ if foundContainedSamples.size() > 0:
+ dataSet = transaction.createNewDataSet("FASTQC")
+ dataSet.setMeasuredData(False)
+ for indx in range(0, len(foundContainedSamples)):
+ lane = foundContainedSamples[indx].getCode().split(':')[-1]
+ print lane
+ if (flowLane == lane):
+ dataSet.setSample(foundContainedSamples[indx])
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath + "/fastqc/", dataSet)
+ break
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties
new file mode 100644
index 00000000000..8730e628162
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-flowcell-hiseq
+#incoming-dir = /links/sonas/cisd/store/incoming-flowCell
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-flowcell-hiseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/register-flowcell-hiseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/register-flowcell-hiseq.py
new file mode 100644
index 00000000000..f82b63d9991
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-hiseq/register-flowcell-hiseq.py
@@ -0,0 +1,96 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Registers an incoming directory as a data set in openBIS. The name of the directory is used to
+search for the matching sample.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX
+expected incoming Name for GAII runs: 110812_6353WAAXX
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+import glob
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+IS_HISEQ_RUN=False
+
+RUNINFO_FOLDER='/links/shared/dsu/dss/register-runstatistics/'
+REGEX_RUNINFO_SAMPLE = '/Data/Status*'
+REGEX_RUNINFO_REPORTS = '/Data/reports'
+MARKER_STRING='.MARKER_is_finished_'
+
+def touch_markerfile(filename):
+ try:
+ # do a touch
+ open(filename, 'w').close()
+ except:
+ print('Could not touch ' + filename)
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName()
+
+ folders=[]
+ folders=os.listdir(incomingPath)
+
+ split=name.split("_")
+ if (len(split) == 4):
+ dataSet = transaction.createNewDataSet("ILLUMINA_HISEQ_OUTPUT")
+ IS_HISEQ_RUN=True
+ if (len(split) == 2):
+ dataSet = transaction.createNewDataSet("ILLUMINA_GA_OUTPUT")
+
+ #move RunInfo into a different drop box
+ #runInfoSample=glob.glob(incomingPath + REGEX_RUNINFO_SAMPLE)
+ #runInfoReport=glob.glob(incomingPath + REGEX_RUNINFO_REPORTS)
+ #runInfoList = runInfoSample + runInfoReport
+ #os.makedirs(RUNINFO_FOLDER + name + '/Data/')
+ #for runInfo in runInfoList:
+ # try:
+ # if os.path.isdir(runInfo):
+# shutil.copytree(runInfo, RUNINFO_FOLDER + name + '/Data/' + os.path.basename(runInfo))
+# else:
+# shutil.copy2(runInfo, RUNINFO_FOLDER + name + '/Data/')
+# except (IOError, os.error), why:
+# print (runInfo, RUNINFO_FOLDER + name, str(why))
+
+# touch_markerfile(RUNINFO_FOLDER+MARKER_STRING+name)
+
+ # Create a data set and set type
+ dataSet.setMeasuredData(False)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name));
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+ dataSet.setSample(foundSamples[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-miseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-miseq/plugin.properties
new file mode 100644
index 00000000000..7f274a70db5
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-miseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-flowcell-miseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-flowcell-miseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-miseq/register-flowcell-miseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-miseq/register-flowcell-miseq.py
new file mode 100644
index 00000000000..c9321e6c87e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-miseq/register-flowcell-miseq.py
@@ -0,0 +1,60 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Registers an incoming directory as a data set in openBIS. The name of the directory is used to
+search for the matching sample.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for MiSeq runs: 120726_M00721_0011_A000000000-A1FVF
+
+@author:
+Manuel Kohler
+'''
+
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+DATASET_TYPE_MISEQ = "ILLUMINA_MISEQ_OUTPUT"
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getAbsolutePath()
+ flowCellId = transaction.getIncoming().getName()
+ dataSet = transaction.createNewDataSet(DATASET_TYPE_MISEQ)
+
+ # Create a data set and set type
+ dataSet.setMeasuredData(False)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search_service.searchForSamples(sc)
+
+ # Make sure there is only one Flow cell registered with this Flow Cell Name / ID
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId)
+
+ print (foundFlowCells)
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+ dataSet.setSample(foundFlowCells[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/plugin.properties
new file mode 100644
index 00000000000..29183e5d548
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-flowcell-nextseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-flowcell-nextseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/register-flowcell-nextseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/register-flowcell-nextseq.py
new file mode 100644
index 00000000000..8f70c8c817e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-flowcell-nextseq/register-flowcell-nextseq.py
@@ -0,0 +1,62 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Registers an incoming directory as a data set in openBIS. The name of the directory is used to
+search for the matching sample.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for MiSeq runs: 120726_M00721_0011_A000000000-A1FVF
+
+@author:
+Manuel Kohler
+'''
+
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+DATASET_TYPE_MISEQ = "ILLUMINA_NEXTSEQ_OUTPUT"
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getAbsolutePath()
+ runFolder = transaction.getIncoming().getName()
+ flowCellId = runFolder.split("_")[-1][1:]
+ dataSet = transaction.createNewDataSet(DATASET_TYPE_MISEQ)
+
+ # Create a data set and set type
+ dataSet.setMeasuredData(False)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ print("Searching for flowcell: " + flowCellId)
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search_service.searchForSamples(sc)
+
+ # Make sure there is only one Flow cell registered with this Flow Cell Name / ID
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId)
+
+ print (foundFlowCells)
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+ dataSet.setSample(foundFlowCells[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/lib/crc32 b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/lib/crc32
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/plugin.properties
new file mode 100644
index 00000000000..f7523f7cdec
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-lane-hiseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-lane-hiseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py
new file mode 100755
index 00000000000..1e6a3f467c3
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-hiseq/register-lane-hiseq.py
@@ -0,0 +1,504 @@
+'''
+Processes each flow lane of a Sequencing run
+
+Expects as incoming folder:
+Project_<Flow Cell>_<Lane>
+e.g.Project_110715_SN792_0054_BC035RACXX_1 or Project_110816_6354LAAXX_1
+
+Note:
+print statements go to: ~openbis/sprint/datastore_server/log/startup_log.txt
+'''
+
+import os
+import re
+import fnmatch
+import time
+import shutil
+import tempfile
+import subprocess
+from time import *
+from datetime import *
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+FASTQ_GZ_PATTERN = "*.fastq.gz"
+METADATA_FILE_SUFFIX = "_metadata.tsv"
+# AFFILIATION= {'FMI': '/links/shared/dsu/dss/customers/fmi/drop-box/',
+# #'BIOCENTER_BASEL': '/links/shared/dsu/dss/customers/biozentrum/drop-box/',
+# 'BIOCENTER_BASEL': '/Users/kohleman/tmp/biozentrum',
+# 'SWISS_TPH' : '/Users/kohleman/tmp/biozentrum',
+# #'SWISS_TPH': '/links/shared/dsu/dss/customers/biozentrum/drop-box/',
+# 'NEUROSTEMX': '/links/shared/dsu/dss/customers/biozentrum',}
+AFFILIATION_PROPERTY_NAME='AFFILIATION'
+INDEX1='BARCODE'
+INDEX2='INDEX2'
+EXTERNAL_SAMPLE_NAME='EXTERNAL_SAMPLE_NAME'
+SAMPLE_TYPE = 'SAMPLE_TYPE'
+SAMPLE_CODE = 'SAMPLE_CODE'
+CRC32_PATH='lib/crc32'
+
+
+DEFAULT_INDEX='NoIndex'
+
+# -------------------------------------------------------------------------------
+
+def getThreadProperties(transaction):
+ threadPropertyDict = {}
+ threadProperties = transaction.getGlobalState().getThreadParameters().getThreadProperties()
+ for key in threadProperties:
+ try:
+ threadPropertyDict[key] = threadProperties.getProperty(key)
+ except:
+ pass
+ return threadPropertyDict
+
+# -------------------------------------------------------------------------------
+
+def CRC32_from_file(filename, transaction):
+ threadPropertyDict = getThreadProperties(transaction)
+ absolutePath = os.path.dirname(os.path.realpath(threadPropertyDict['script-path']))
+ fullPathCrc32 = (os.path.join(absolutePath, CRC32_PATH))
+ if os.path.exists(fullPathCrc32):
+ args = [fullPathCrc32, filename]
+ p = subprocess.Popen(args, stdout=subprocess.PIPE)
+ cksum = (p.communicate()[0])
+ print("Calculated crc32 checksum for: "+ os.path.basename(filename) + " " + cksum)
+ else:
+ cksum = 0 & 0xFFFFFFFF
+ return cksum
+
+
+def getFileNames(path):
+ '''
+ Gets all files matching a PATTERN in a path recursively
+ and returns the result as a list
+ '''
+ matches = []
+ for root, dirnames, filenames in os.walk(path):
+ for filename in fnmatch.filter(filenames, FASTQ_GZ_PATTERN):
+ matches.append(os.path.join(root, filename))
+ matches.sort()
+ return(matches)
+
+# -------------------------------------------------------------------------------
+
+def sanitizeString(myString):
+ return re.sub('[^A-Za-z0-9]+', '_', myString)
+
+# -------------------------------------------------------------------------------
+
+def get_vocabulary_descriptions (transaction, vocabulary_name):
+ vocabulary_descriptions_dict = {}
+ vocabulary = transaction.getVocabulary(vocabulary_name)
+ vocabulary_terms = vocabulary.getTerms()
+ for term in vocabulary_terms:
+ vocabulary_descriptions_dict[term.getCode()] = term.getDescription()
+ return vocabulary_descriptions_dict
+
+# -------------------------------------------------------------------------------
+
+def writeMetadataFile (transaction, fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict,
+ experiment, fastqFileList, flowLane):
+ '''
+ Writes a file of meta date related to one sample
+ '''
+
+ fastqFileList.sort()
+
+ expId = experiment.getIdentifier()
+ try:
+ meta_data_file = open(fileName,'w')
+ for propertyType in parentPropertyTypes:
+ if (propertyType in [u'FLOW_CELL_PROPERTIES']):
+ continue
+ if propertyType in [SAMPLE_TYPE] or propertyType in [SAMPLE_CODE]:
+ meta_data_file.write(propertyType.encode('utf-8') + "\t" +
+ str(parentPropertiesMap[propertyType])+ "\n")
+ else:
+ meta_data_file.write(propertyType.encode('utf-8') + "\t" +
+ parentPropertiesMap[propertyType].tryGetAsString().encode('utf-8').replace('\n',',') + "\n")
+
+ meta_data_file.write("EXPERIMENT\t" + expId + "\n".encode('utf-8'))
+ meta_data_file.write("\nFLOWCELL PROPERTIES\n".encode('utf-8'))
+ fcMetaDataDict["LANE_NUMBER"] = flowLane
+ keys = fcMetaDataDict.keys()
+ keys.sort()
+
+ sequencer_vocabulary_description = get_vocabulary_descriptions(transaction, 'SEQUENCER')
+ meta_data_file.write('SEQUENCER_MODEL' + "\t" + sequencer_vocabulary_description[fcMetaDataDict['SEQUENCER']].encode('utf-8') + "\n")
+
+ for k in keys:
+ meta_data_file.write(k.encode('utf-8') + "\t" + fcMetaDataDict[k].encode('utf-8') + "\n")
+
+ meta_data_file.write("\nFASTQ_FILES\n".encode('utf-8'))
+ for file in fastqFileList:
+ meta_data_file.write(os.path.basename(file) + "\t" + str(CRC32_from_file(file, transaction)) + "\n")
+
+ except IOError:
+ print ('File error, could not write '+ fileName)
+ finally:
+ meta_data_file.close()
+
+def create_openbis_timestamp ():
+ '''
+ Create an openBIS conform timestamp
+ '''
+ tz=localtime()[3]-gmtime()[3]
+ d=datetime.now()
+ return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00")
+
+def extraCopy (affiliation_name, path):
+ '''
+ Handles the extra copies of the data for transfer with datamover via the
+ bc2 network to the FMI and BIOCENTER
+ For the BIOCENTER there is a folder created in which all data gets into
+ '''
+ if (affiliation_name in AFFILIATION):
+ if (affiliation_name == 'BIOCENTER_BASEL' or affiliation_name == 'NEUROSTEMX' or affiliation_name == 'SWISS_TPH'):
+ dirname = AFFILIATION[affiliation_name] + datetime.now().strftime("%Y-%m-%d")
+ if not os.path.exists(dirname):
+ os.mkdir(dirname)
+ shutil.copy(path, dirname)
+ else:
+ shutil.copy(path, AFFILIATION[affiliation_name])
+
+# -------------------------------------------------------------------------------
+
+def extraCopySciCore (affiliation_name, filePath, destinationFolder=""):
+ '''
+ Handles the extra copies of the data for transfer with datamover for SCICORE
+ '''
+ dirname = ''
+
+ dropBoxFolder = '/links/shared/dsu/dss/customers/biozentrum_scicore/drop-box/'
+ #dropBoxFolder = '/Users/kohleman/tmp/scicore'
+ basename = os.path.basename(filePath)
+
+ splits = basename.split('_')
+ folderName = "_".join(splits[0:8])
+
+ if (affiliation_name == 'BIOCENTER_BASEL' or affiliation_name == 'NEUROSTEMX' or affiliation_name == 'SWISS_TPH'):
+ dirname = os.path.join(dropBoxFolder, folderName)
+ if destinationFolder:
+ shutil.copy(filePath, destinationFolder)
+ else:
+ if not os.path.exists(dirname):
+ os.mkdir(dirname)
+ shutil.copy(filePath, dirname)
+ print("Copied " + basename + " to " + dropBoxFolder + "\n")
+ return dirname
+
+# -------------------------------------------------------------------------------
+
+def searchSample (sample_code, search_service):
+ sc = SearchCriteria()
+ print('Searching sample: '+ str(sample_code))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample_code));
+ foundSamples = search_service.searchForSamples(sc)
+ return foundSamples
+
+# -------------------------------------------------------------------------------
+
+def get_sample_properties (transaction, sample):
+
+ sample_properties_dict = {}
+ # returns Map<String, String>
+ sample_properties = sample.getSample().getProperties()
+ sequencing_sample_type = sample.getSampleType()
+ sequencing_sample_code = sample.getCode()
+ sample_properties_dict[SAMPLE_TYPE] = sequencing_sample_type
+ sample_properties_dict[SAMPLE_CODE] = sequencing_sample_code
+
+ for property in sample_properties:
+ code = property.getPropertyType().getSimpleCode()
+ sample_properties_dict[code] = property.tryGetAsString()
+
+ return sample_properties_dict
+
+# -------------------------------------------------------------------------------
+
+def getFlowCellMetaData (transaction, flowCellId):
+
+ def sortedDictValues(adict):
+ keys = adict.keys()
+ keys.sort()
+ return map(adict.get, keys)
+
+ search = transaction.getSearchService()
+ sc = SearchCriteria()
+ print('Searching FlowCell: '+ str(flowCellId))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search.searchForSamples(sc)
+
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId)
+
+ fcPropertiesDict = {}
+ fcPropertyTypes = []
+
+ fcProperties = foundFlowCells[0].getSample().getProperties()
+ for property in fcProperties:
+ code = property.getPropertyType().getSimpleCode()
+ fcPropertyTypes.append(code)
+ fcPropertiesDict[code] = property
+
+ fcPropertyTypes.sort()
+ return fcPropertiesDict, fcPropertyTypes
+
+# -------------------------------------------------------------------------------
+
+def searchParents (search_service, parents):
+ '''
+ Searches for all parents and returns a java.util.List<ISampleImmutable>
+ '''
+ # search for the parents
+ sc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ # Get the codes for all parents
+ for parent in parents:
+ parentSubCode = parent.getSubCode()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode));
+ # all parents of the flow lane
+ foundParents = search_service.searchForSamples(sc)
+
+ return foundParents
+
+# -------------------------------------------------------------------------------
+
+def getProperties (foundParent, fcMetaDataDict):
+ '''
+
+ '''
+ parent = foundParent.getSample()
+ # ArrayList
+ parentProperties = parent.getProperties()
+ # just get the current code
+ parentCode = parent.getCode()
+ #print("Found parent code: "+ parentCode)
+ parentSampleType = parent.getSampleType()
+
+ # reformat Java ArrayList and Sort
+ parentPropertyTypes = []
+ parentPropertiesMap = {}
+
+ parentPropertyTypes.append(SAMPLE_TYPE)
+ parentPropertyTypes.append(SAMPLE_CODE)
+ parentPropertiesMap[SAMPLE_TYPE] = parentSampleType
+ parentPropertiesMap[SAMPLE_CODE] = parentCode
+ experiment = parent.getExperiment()
+
+ for property in parentProperties:
+ code = property.getPropertyType().getSimpleCode()
+ parentPropertyTypes.append(code)
+ parentPropertiesMap[code] = property
+ try:
+ barcode = parentPropertiesMap[INDEX1].tryGetAsString()
+ if barcode == "NOINDEX":
+ barcode = DEFAULT_INDEX
+ else:
+ barcode.split()[-1][:-1]
+ except:
+ barcode = DEFAULT_INDEX
+
+ i2Length = int(fcMetaDataDict['INDEXREAD2'].tryGetAsString().encode('utf-8'))
+ if i2Length > 0:
+ try:
+ index2 = parentPropertiesMap[INDEX2].tryGetAsString()
+ if index2 == "NOINDEX":
+ index2 = DEFAULT_INDEX
+ else:
+ index2.split()[-1][:-1]
+ except:
+ index2 = DEFAULT_INDEX
+ else:
+ index2 = DEFAULT_INDEX
+
+ completeBarcode=barcode + "-" + index2
+ parentPropertyTypes.sort()
+ #print("parentPropertiesMap")
+ #print(parentPropertiesMap)
+ return parentCode, parentProperties, parentPropertyTypes, parentPropertiesMap, experiment, barcode, index2, completeBarcode
+
+# -------------------------------------------------------------------------------
+
+def createMetDataFileName (parentCode, incoming_sample, completeBarcode, flowLane, METADATA_FILE_SUFFIX):
+ return parentCode.replace('-','_') + "_" + incoming_sample.replace(':', '_') + "_" + completeBarcode + "_L00" + flowLane +METADATA_FILE_SUFFIX
+
+# -------------------------------------------------------------------------------
+
+def process(transaction):
+
+ EXPERIMENT_CODE = 'EXPERIMENT'
+
+ # useful for debugging:
+ print("\n" + str(datetime.now()))
+
+ incomingPath = transaction.getIncoming().getAbsolutePath()
+ name = transaction.getIncoming().getName()
+
+ folders=[]
+ folders=os.listdir(incomingPath)
+
+ # expected incoming Name, e.g.: Project_110715_SN792_0054_BC035RACXX_1
+ split=name.split("_")
+ if (len(split) == 6):
+ runningDate = split[1]
+ sequencerId = split[2]
+ sequentialNumber = split[3]
+ hiseqTray = split[4][0]
+ flowCellId = split[4][1:]
+ flowLane = split[-1]
+ incoming_sample=runningDate+ '_'+ sequencerId + '_' + sequentialNumber + '_' + hiseqTray + flowCellId + ':' + flowLane
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the incoming_sample which is a Flow Lane
+ sc = SearchCriteria()
+ print('Processing sample: '+ str(incoming_sample))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample));
+ foundSamples = search_service.searchForSamples(sc)
+
+ # there should be only one sample because it is unique within one Flow Cell
+ if (len(foundSamples) > 1):
+ raise Exception("More than one sample found! No unique code: " + incoming_sample)
+ elif (len(foundSamples) == 0):
+ raise Exception("No matching sample found for: " + incoming_sample)
+ else :
+ sample = foundSamples[0].getSample()
+ parents = sample.getParents()
+
+ foundParents = searchParents(search_service, parents)
+
+ # -------------------------------------------------------------------------------
+
+ flowcell_sample_immutable = searchSample (runningDate+ '_'+ sequencerId + '_' + sequentialNumber + '_' + hiseqTray + flowCellId , search_service)
+ fcMetaDataDict_NEW = get_sample_properties(transaction, flowcell_sample_immutable[0])
+ fcMetaDataDict, fcMetaDataList = getFlowCellMetaData(transaction, incoming_sample.split(":")[0])
+
+ def addExternalSampleName (fastqFileList, usableExternalSampleName):
+ externalNamesFastqFileDict = {}
+
+ for file in fastqFileList:
+ folder = os.path.dirname(file)
+ fileName = os.path.basename(file)
+ filepart, suffix = fileName.split('.',1)
+ sanitizedExternalSampleName = sanitizeString(usableExternalSampleName)
+ if sanitizedExternalSampleName:
+ newFile = folder + "/" + filepart + "_" + sanitizedExternalSampleName + "." + suffix
+ else:
+ newFile = file
+ externalNamesFastqFileDict[file] = newFile
+ return externalNamesFastqFileDict
+
+ # loop over each Sample folder within a lane
+ for f in range(0,len(folders)):
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("FASTQ_GZ")
+ dataSet.setMeasuredData(False)
+ dataSet.setPropertyValue(INDEX1, DEFAULT_INDEX)
+ dataSet.setPropertyValue(INDEX2, DEFAULT_INDEX)
+ dirName = transaction.createNewDirectory(dataSet,folders[f])
+ usableExternalSampleName = "EXTERNAL_NAME"
+
+ # if multiplexed samples then there is more than one folder
+ pathPerLane = incomingPath + '/' + folders[f]
+
+ # get all fastqs in this dataSet
+ fastqFileList=getFileNames(pathPerLane)
+
+ # get all properties of the parent samples
+ for foundParent in foundParents:
+
+ parentCode, parentProperties, parentPropertyTypes, parentPropertiesMap, experiment, barcode, index2, completeBarcode = getProperties (foundParent, fcMetaDataDict)
+ nameOfFile = createMetDataFileName (parentCode, incoming_sample, completeBarcode, flowLane, METADATA_FILE_SUFFIX)
+ #print folders[f]
+ folderSplit = '-'.join(folders[f].split('_')[1:4])
+ #print "Folder split: " + folderSplit
+ #print str(parentCode)
+ organism = parentPropertiesMap['NCBI_ORGANISM_TAXONOMY'].tryGetAsString().split(":")[-1].strip()
+
+ if (parentCode == folderSplit):
+
+ externalSampleName = parentPropertiesMap[EXTERNAL_SAMPLE_NAME].tryGetAsString()
+ lengthLimit = 30
+ if len(externalSampleName) > lengthLimit:
+ usableExternalSampleName = externalSampleName[0:lengthLimit]
+ else:
+ usableExternalSampleName = externalSampleName
+
+ nameOfFile = parentCode.replace('-','_') + "_" + incoming_sample.replace(':', '_') + "_" + completeBarcode + "_L00" + \
+ flowLane + "_" + sanitizeString(usableExternalSampleName) + METADATA_FILE_SUFFIX
+
+ dataSet.setPropertyValue(INDEX1, barcode)
+ dataSet.setPropertyValue(INDEX2, index2)
+ dataSet.setPropertyValue(EXTERNAL_SAMPLE_NAME, parentPropertiesMap[EXTERNAL_SAMPLE_NAME].tryGetAsString())
+ print("Creating metadata file:" + nameOfFile)
+ # get a file from the IDataSetRegistrationTransaction so it is automatically part of the data set
+ pathToFile = transaction.createNewFile(dataSet, folders[f], nameOfFile)
+ externalNamesFastqFileDict = addExternalSampleName(fastqFileList, usableExternalSampleName)
+
+ try:
+ affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ except:
+ affiliation_name = 'NEUROSTEMX'
+
+ for extFileNameFastQ in externalNamesFastqFileDict:
+ print ("RENAME file " + str(os.path.basename(extFileNameFastQ)) + " TO " + str(os.path.basename(externalNamesFastqFileDict[extFileNameFastQ])))
+ os.rename(extFileNameFastQ, externalNamesFastqFileDict[extFileNameFastQ])
+ destinationFolder = ''
+ extraCopySciCore (affiliation_name, externalNamesFastqFileDict[extFileNameFastQ], destinationFolder)
+
+ writeMetadataFile(transaction, pathToFile, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict_NEW, experiment, externalNamesFastqFileDict.values(), flowLane)
+ extraCopySciCore (affiliation_name, pathToFile)
+
+ for extFileNameFastQ in externalNamesFastqFileDict:
+ transaction.moveFile(externalNamesFastqFileDict[extFileNameFastQ] , dataSet, folders[f])
+
+ # Undetermined files #################################
+ elif (folderSplit.startswith('lane') and barcode == "NoIndex" and index2 == "NoIndex" and organism !='10847'):
+ usableExternalSampleName = ""
+ print("********************** Creating metadata file for Undetermined:" + nameOfFile)
+
+ # get a file from the IDataSetRegistrationTransaction so it is automatically part of the data set
+ pathToFile = transaction.createNewFile(dataSet, folders[f], nameOfFile)
+ externalNamesFastqFileDict = addExternalSampleName(fastqFileList, usableExternalSampleName)
+ writeMetadataFile(transaction, pathToFile, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict_NEW, experiment, externalNamesFastqFileDict.values(), flowLane)
+ try:
+ affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ except:
+ affiliation_name = 'NEUROSTEMX'
+
+ dirName = extraCopySciCore (affiliation_name, pathToFile)
+
+ externalNamesFastqFileDict = addExternalSampleName(fastqFileList, usableExternalSampleName)
+ for extFileNameFastQ in externalNamesFastqFileDict:
+ extraCopySciCore (affiliation_name, externalNamesFastqFileDict[extFileNameFastQ], dirName)
+
+ # Write Meta data for Parents Files
+ for foundParent in foundParents:
+ addParentCode, parentProperties, parentPropertyTypes, parentPropertiesMap, experiment, barcode, index2, completeBarcode = getProperties (foundParent, fcMetaDataDict)
+ nameOfFile = createMetDataFileName (addParentCode, incoming_sample, completeBarcode, flowLane, METADATA_FILE_SUFFIX)
+ if (parentCode != addParentCode):
+ tmpDir = tempfile.mkdtemp()
+ fileName = os.path.join(tmpDir, "PARENT_" + nameOfFile)
+ writeMetadataFile(transaction, fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict_NEW, experiment, [], flowLane)
+ try:
+ affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ except:
+ affiliation_name = 'NEUROSTEMX'
+# extraCopy (affiliation_name, fileName)
+ extraCopySciCore (affiliation_name, fileName, dirName)
+
+ for extFileNameFastQ in externalNamesFastqFileDict:
+ transaction.moveFile(externalNamesFastqFileDict[extFileNameFastQ] , dataSet, folders[f])
+
+
+ if foundSamples.size() > 0:
+ sa = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier())
+ sa.setPropertyValue("DATA_TRANSFERRED", create_openbis_timestamp())
+ dataSet.setSample(foundSamples[0])
+
+ shutil.rmtree(incomingPath)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/lib/crc32 b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/lib/crc32
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/plugin.properties
new file mode 100644
index 00000000000..51c2eec3813
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-lane-miseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-lane-miseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/register-lane-miseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/register-lane-miseq.py
new file mode 100644
index 00000000000..56d96799ca6
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-miseq/register-lane-miseq.py
@@ -0,0 +1,327 @@
+'''
+Processes each flow lane of a Sequencing run
+
+Expects as incoming folder:
+Project_<Flow Cell>_<Lane>
+e.g.Project_110715_SN792_0054_BC035RACXX_1 or Project_110816_6354LAAXX_1
+
+Note:
+print statements go to: ~openbis/sprint/datastore_server/log/startup_log.txt
+'''
+
+import os
+import fnmatch
+import time
+import shutil
+import re
+from time import *
+from datetime import *
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+FASTQ_GZ_PATTERN = "*.fastq.gz"
+METADATA_FILE_SUFFIX = "_metadata.tsv"
+AFFILIATION= {'FMI': '/links/shared/dsu/dss/customers/fmi/drop-box/','BIOCENTER_BASEL': '/links/shared/dsu/dss/customers/biozentrum/drop-box/', 'NEUROSTEMX': '/links/shared/dsu/dss/customers/biozentrum/drop-box/'}
+AFFILIATION_PROPERTY_NAME='AFFILIATION'
+INDEX1='BARCODE'
+INDEX2='INDEX2'
+EXTERNAL_SAMPLE_NAME='EXTERNAL_SAMPLE_NAME'
+DEFAULT_INDEX='NoIndex'
+CRC32_PATH='lib/crc32'
+
+# -------------------------------------------------------------------------------
+
+def getFileNames(path):
+ '''
+ Gets all files matching a PATTERN in a path recursively
+ and returns the result as a list
+ '''
+ matches = []
+ for root, dirnames, filenames in os.walk(path):
+ for filename in fnmatch.filter(filenames, FASTQ_GZ_PATTERN):
+ matches.append(os.path.join(root, filename))
+ matches.sort()
+ return(matches)
+
+def writeMetadataFile (fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList):
+ '''
+ Writes a file of meta date related to one sample
+ '''
+ try:
+ metaDataFile = open(fileName,'w')
+ for propertyType in parentPropertyTypes:
+ metaDataFile.write(propertyType.encode('utf-8') + "\t" +
+ parentPropertiesMap[propertyType].tryGetAsString().encode('utf-8') + "\n")
+
+ metaDataFile.write("\nFLOWCELL PROPERTIES\n".encode('utf-8'))
+
+ for fcMetaData in fcMetaDataList:
+ metaDataFile.write(fcMetaData.encode('utf-8') + "\t" +
+ fcMetaDataDict[fcMetaData].tryGetAsString().encode('utf-8') + "\n")
+ pass
+ except IOError:
+ print ('File error, could not write '+ fileName)
+ finally:
+ metaDataFile.close()
+
+def create_openbis_timestamp ():
+ '''
+ Create an openBIS conform timestamp
+ '''
+ tz=localtime()[3]-gmtime()[3]
+ d=datetime.now()
+ return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00")
+
+def extraCopy (affiliation_name, path):
+ '''
+ Handles the extra copies of the data for transfer with datamover via the
+ bc2 network to the FMI and BIOCENTER
+ For the BIOCENTER there is a folder created in which all data gets into
+ '''
+ if (affiliation_name in AFFILIATION):
+ if (affiliation_name == 'BIOCENTER_BASEL' or affiliation_name == 'NEUROSTEMX' ):
+ dirname = AFFILIATION[affiliation_name] + datetime.now().strftime("%Y-%m-%d")
+ if not os.path.exists(dirname):
+ os.mkdir(dirname)
+ shutil.copy(path, dirname)
+ else:
+ shutil.copy(path, AFFILIATION[affiliation_name])
+# -------------------------------------------------------------------------------
+
+def getFlowCellMetaData (transaction, flowCellId):
+
+ def sortedDictValues(adict):
+ keys = adict.keys()
+ keys.sort()
+ return map(adict.get, keys)
+
+ search = transaction.getSearchService()
+ sc = SearchCriteria()
+ print('Searching FlowCell: '+ str(flowCellId))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowCellId));
+ foundFlowCells = search.searchForSamples(sc)
+
+ try:
+ assert foundFlowCells.size() == 1
+ except AssertionError:
+ print (str(foundFlowCells.size()) + ' flow cells found which match the criterias: '+ flowCellId)
+
+ fcPropertiesDict = {}
+ fcPropertyTypes = []
+
+ fcProperties = foundFlowCells[0].getSample().getProperties()
+ for property in fcProperties:
+ code = property.getPropertyType().getSimpleCode()
+ fcPropertyTypes.append(code)
+ fcPropertiesDict[code] = property
+
+ fcPropertyTypes.sort()
+ return fcPropertiesDict, fcPropertyTypes
+
+# -------------------------------------------------------------------------------
+
+def searchParents (search_service, parents):
+
+ # search for the parents
+ sc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ # Get the codes for all parents
+ for parent in parents:
+ parentSubCode = parent.getSubCode()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode));
+ # all parents of the flow lane
+ foundParents = search_service.searchForSamples(sc)
+
+ return foundParents
+
+# -------------------------------------------------------------------------------
+
+def sanitizeString(myString):
+ return re.sub('[^A-Za-z0-9]+', '_', myString)
+
+# -------------------------------------------------------------------------------
+
+def process(transaction):
+
+ # useful for debugging:
+ print(datetime.now())
+
+ incomingPath = transaction.getIncoming().getAbsolutePath()
+ name = transaction.getIncoming().getName()
+
+ folders=[]
+ folders=os.listdir(incomingPath)
+
+ # expected incoming Name, e.g.: Project_131107_M01761_0043_000000000_A5BNW_1_1
+ split=name.split("_")
+ if (len(split) == 8):
+ runningDate = split[1]
+ sequencerId = split[2]
+ sequentialNumber = split[3]
+ flowCellId = split[4] + "-" + split[5]
+ flowLane = "_".join(split[-2:])
+ incoming_sample=runningDate+ '_'+ sequencerId + '_' + sequentialNumber + '_' + flowCellId + ':' + flowLane
+
+ # expected Project_130805_M01761_0018_000000000_A59MV_1
+ if (len(split) == 7):
+ runningDate = split[1]
+ sequencerId = split[2]
+ sequentialNumber = split[3]
+ flowCellId = split[4] + "-" + split[5]
+ flowLane = split[-1]
+ incoming_sample = '_'.join([runningDate, sequencerId, sequentialNumber, flowCellId]) + ':' + flowLane
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the incoming_sample which is a Flow Lane
+ sc = SearchCriteria()
+ print('Processing sample: '+ str(incoming_sample))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incoming_sample));
+ foundSamples = search_service.searchForSamples(sc)
+
+ # there should be only one sample because it is unique within one Flow Cell
+ if (len(foundSamples) > 1):
+ raise Exception("More than one sample found! No unique code: " + incoming_sample)
+ elif (len(foundSamples) == 0):
+ raise Exception("No matching sample found for: " + incoming_sample)
+ else :
+ sample = foundSamples[0].getSample()
+ parents = sample.getParents()
+
+ foundParents = searchParents(search_service, parents)
+
+ # -------------------------------------------------------------------------------
+
+ usableExternalSampleName = ""
+
+ # loop over each Sample folder within a lane
+ for f in range(0,len(folders)):
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("FASTQ_GZ")
+ dataSet.setMeasuredData(False)
+ dataSet.setPropertyValue(INDEX1, DEFAULT_INDEX)
+ dataSet.setPropertyValue(INDEX2, DEFAULT_INDEX)
+ dirName = transaction.createNewDirectory(dataSet,folders[f])
+
+ # if multiplexed samples then there is more than one folder
+ pathPerLane = incomingPath + '/' + folders[f]
+ print ("pathPerLane: " + pathPerLane)
+
+ # get all properties of the parent samples
+ for foundParent in foundParents:
+ parent = foundParent.getSample()
+ # ArrayList
+ parentProperties = parent.getProperties()
+ # just get the current code
+ parentCode = parent.getCode()
+ #print("Found parent code: "+ parentCode)
+
+ # reformat Java ArrayList and Sort
+ parentPropertyTypes = []
+ parentPropertiesMap = {}
+ for property in parentProperties:
+ code = property.getPropertyType().getSimpleCode()
+ parentPropertyTypes.append(code)
+ parentPropertiesMap[code] = property
+ try:
+ barcode = parentPropertiesMap[INDEX1].tryGetAsString()
+ if barcode == "NOINDEX":
+ barcode = DEFAULT_INDEX
+ else:
+ barcode.split()[-1][:-1]
+ except:
+ barcode = DEFAULT_INDEX
+
+ try:
+ index2 = parentPropertiesMap[INDEX2].tryGetAsString()
+ if index2 == "NOINDEX":
+ index2 = DEFAULT_INDEX
+ else:
+ index2.split()[-1][:-1]
+ except:
+ index2 = DEFAULT_INDEX
+
+ # just use the first six nucleotides for the naming
+ completeBarcode=barcode + "-" + index2
+
+ parentPropertyTypes.sort()
+
+ print folders[f]
+ folderSplit = '-'.join(folders[f].split('_')[1:4])
+ print "Folder split: " + folderSplit
+ print str(parentCode)
+
+ if (parentCode == folderSplit):
+
+ # BSSE-1754_C0364ACXX_CTTGTAA-AACC_L007_R1_001.fastq.gz
+ # BSSE_QGF_10002_121130_SN792_0189_AD1FBTACXX_1_NoIndex_L001_R1_001.fastq.gz
+ externalSampleName = parentPropertiesMap[EXTERNAL_SAMPLE_NAME].tryGetAsString()
+ if len(externalSampleName) > 15:
+ usableExternalSampleName = externalSampleName[0:15]
+ else:
+ usableExternalSampleName = externalSampleName
+
+ nameOfFile = parentCode.replace('-','_') + "_" + incoming_sample.replace(':', '_') + "_" + completeBarcode + "_L00" + \
+ flowLane + "_" + sanitizeString(usableExternalSampleName) + METADATA_FILE_SUFFIX
+ dataSet.setPropertyValue(INDEX1, barcode)
+ dataSet.setPropertyValue(INDEX2, index2)
+ dataSet.setPropertyValue(EXTERNAL_SAMPLE_NAME, parentPropertiesMap[EXTERNAL_SAMPLE_NAME].tryGetAsString())
+ print("Creating metadata file:" + nameOfFile)
+ # get a file from the IDataSetRegistrationTransaction so it is automatically part of the data set
+ pathToFile = transaction.createNewFile(dataSet, folders[f], nameOfFile)
+
+ fcMetaDataDict, fcMetaDataList = getFlowCellMetaData(transaction, incoming_sample.split(":")[0])
+ writeMetadataFile(pathToFile, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList)
+
+ affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ extraCopy (affiliation_name, pathToFile)
+
+ elif (folderSplit.startswith('lane') and barcode == "NoIndex" and index2 == "NoIndex"):
+ usableExternalSampleName = ""
+ #print("Creating metadata file for Undetermined:" + nameOfFile)
+ # get a file from the IDataSetRegistrationTransaction so it is automatically part of the data set
+ #pathToFile = transaction.createNewFile(dataSet, folders[f], nameOfFile)
+ #writeMetadataFile(pathToFile, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList, experiment)
+ #affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ #extraCopy (affiliation_name, pathToFile)
+ #for foundParent in foundParents:
+ # addParentCode, parentProperties, parentPropertyTypes, parentPropertiesMap, experiment, barcode, index2, completeBarcode = getProperties (foundParent, fcMetaDataDict)
+ # nameOfFile = createMetDataFileName (addParentCode, incoming_sample, completeBarcode, flowLane, METADATA_FILE_SUFFIX)
+ # if (parentCode != addParentCode):
+ # tmpDir = tempfile.mkdtemp()
+ # fileName = os.path.join(tmpDir, "PARENT_" + nameOfFile)
+ # writeMetadataFile(fileName, parentPropertyTypes, parentPropertiesMap, fcMetaDataDict, fcMetaDataList, experiment)
+ # affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ # extraCopy (affiliation_name, fileName)
+
+
+ # get all fastqs in this dataSet
+ fastqFileList=getFileNames(pathPerLane)
+ print("fastqFileList:")
+ print(fastqFileList)
+
+ # put the files into the dataSet
+ affiliation_name = parentPropertiesMap[AFFILIATION_PROPERTY_NAME].tryGetAsString()
+ for file in fastqFileList:
+ folder = os.path.dirname(file)
+ fileName = os.path.basename(file)
+ filepart, suffix = fileName.split('.',1)
+ sanitizedExternalSampleName = sanitizeString(usableExternalSampleName)
+
+ if sanitizedExternalSampleName:
+ newFile = folder + "/" + filepart + "_" + sanitizedExternalSampleName + "." + suffix
+ print ("RENAME file " + file + " TO " + newFile)
+ os.rename(file, newFile)
+ else:
+ # Undetermined file
+ newFile = file
+
+ extraCopy (affiliation_name, newFile)
+ # finally add the files to the data set
+ transaction.moveFile(newFile , dataSet, folders[f])
+
+ if foundSamples.size() > 0:
+ sa = transaction.getSampleForUpdate(foundSamples[0].getSampleIdentifier())
+ sa.setPropertyValue("DATA_TRANSFERRED", create_openbis_timestamp())
+ dataSet.setSample(foundSamples[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/lib/crc32 b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/lib/crc32
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diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/plugin.properties
new file mode 100644
index 00000000000..e80d511ec82
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-lane-nextseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-lane-nextseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/register-lane-nextseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/register-lane-nextseq.py
new file mode 100644
index 00000000000..d357a6a02f1
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-lane-nextseq/register-lane-nextseq.py
@@ -0,0 +1,409 @@
+'''
+Processes each flow lane of a Sequencing run
+
+Expects as incoming folder:
+BSSE_QGF_22266_H0W8YBGXX_1
+or
+Undetermined_H0W8YBGXX
+
+Note:
+print statements go to: ~openbis/sprint/datastore_server/log/startup_log.txt
+'''
+
+import os
+import fnmatch
+import time
+import shutil
+import re
+import subprocess
+from time import *
+from datetime import *
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+FASTQ_GZ_PATTERN = "*.fastq.gz"
+METADATA_FILE_SUFFIX = "_metadata.tsv"
+AFFILIATION= {'FMI': '/links/shared/dsu/dss/customers/fmi/drop-box/',
+ 'BIOCENTER_BASEL': '/links/shared/dsu/dss/customers/biozentrum/drop-box/',
+ 'NEUROSTEMX': '/links/shared/dsu/dss/customers/biozentrum/drop-box/',
+ 'SWISS_TPH' : '/links/shared/dsu/dss/customers/biozentrum/drop-box/'}
+AFFILIATION_PROPERTY_NAME='AFFILIATION'
+INDEX1='BARCODE'
+INDEX2='INDEX2'
+EXTERNAL_SAMPLE_NAME='EXTERNAL_SAMPLE_NAME'
+INDEXREAD1='INDEXREAD'
+INDEXREAD2='INDEXREAD2'
+SAMPLE_TYPE = 'SAMPLE_TYPE'
+SAMPLE_CODE = 'SAMPLE_CODE'
+NCBI_ORGANISM_TAXONOMY='NCBI_ORGANISM_TAXONOMY'
+PHIX_TAXONOMY_ID='10847'
+DEFAULT_INDEX='NoIndex'
+CRC32_PATH='lib/crc32'
+
+# -------------------------------------------------------------------------------
+
+def getThreadProperties(transaction):
+ threadPropertyDict = {}
+ threadProperties = transaction.getGlobalState().getThreadParameters().getThreadProperties()
+ for key in threadProperties:
+ try:
+ threadPropertyDict[key] = threadProperties.getProperty(key)
+ except:
+ pass
+ return threadPropertyDict
+
+def CRC32_from_file(filename, transaction):
+ threadPropertyDict = getThreadProperties(transaction)
+ absolutePath = os.path.dirname(os.path.realpath(threadPropertyDict['script-path']))
+ fullPathCrc32 = (os.path.join(absolutePath, CRC32_PATH))
+ if os.path.exists(fullPathCrc32):
+ args = [fullPathCrc32, filename]
+ p = subprocess.Popen(args, stdout=subprocess.PIPE)
+ cksum = (p.communicate()[0])
+ print("Calculated crc32 checksum for: "+ os.path.basename(filename) + " " + cksum)
+ else:
+ cksum = 0 & 0xFFFFFFFF
+ return cksum
+
+def getFileNames(path):
+ '''
+ Gets all files matching a PATTERN in a path recursively
+ and returns the result as a list
+ '''
+ matches = []
+ for root, dirnames, filenames in os.walk(path):
+ for filename in fnmatch.filter(filenames, FASTQ_GZ_PATTERN):
+ matches.append(os.path.join(root, filename))
+ matches.sort()
+ return(matches)
+
+def writeMetadataFile(transaction, folder_name, meta_data_file_name, sequencing_sample_properties_dict,
+ fcMetaDataDict, experiment, affiliation_name, fastqFileList, flowLane):
+ '''
+ Writes a file of meta data related to one sample
+ '''
+
+ sequencing_sample_properties_list = sequencing_sample_properties_dict.keys()
+ sequencing_sample_properties_list.sort()
+
+ expId = experiment.getIdentifier()
+ try:
+ meta_data_file = open(meta_data_file_name,'w')
+ for propertyType in sequencing_sample_properties_list:
+ if (propertyType in [u'FLOW_CELL_PROPERTIES']):
+ continue
+ if propertyType in [SAMPLE_TYPE] or propertyType in [SAMPLE_CODE]:
+ meta_data_file.write(propertyType.encode('utf-8') + "\t" +
+ str(sequencing_sample_properties_dict[propertyType])+ "\n")
+ else:
+ meta_data_file.write(propertyType.encode('utf-8') + "\t" +
+ sequencing_sample_properties_dict[propertyType].encode('utf-8').replace('\n',',') + "\n")
+
+ meta_data_file.write("EXPERIMENT\t" + expId + "\n".encode('utf-8'))
+ meta_data_file.write("\nFLOWCELL PROPERTIES\n".encode('utf-8'))
+ fcMetaDataDict["LANE_NUMBER"] = flowLane
+ keys = fcMetaDataDict.keys()
+ keys.sort()
+
+ sequencer_vocabulary_description = get_vocabulary_descriptions(transaction, 'SEQUENCER')
+ meta_data_file.write('SEQUENCER_MODEL' + "\t" + sequencer_vocabulary_description[fcMetaDataDict['SEQUENCER']].encode('utf-8') + "\n")
+
+ for k in keys:
+ meta_data_file.write(k.encode('utf-8') + "\t" + fcMetaDataDict[k].encode('utf-8') + "\n")
+
+ meta_data_file.write("\nFASTQ_FILES\n".encode('utf-8'))
+ for file in fastqFileList:
+ meta_data_file.write(os.path.basename(file) + "\t" + str(CRC32_from_file(file, transaction)) + "\n")
+
+ except IOError:
+ print ('File error, could not write '+ file)
+ finally:
+ meta_data_file.close()
+
+ destinationFolder = folder_name
+ #extraCopy (affiliation_name, meta_data_file_name)
+ extraCopySciCore (affiliation_name, meta_data_file_name, destinationFolder)
+
+def create_openbis_timestamp ():
+ '''
+ Create an openBIS conform timestamp
+ '''
+ tz=localtime()[3]-gmtime()[3]
+ d=datetime.now()
+ return d.strftime("%Y-%m-%d %H:%M:%S GMT"+"%+.2d" % tz+":00")
+
+# -------------------------------------------------------------------------------
+
+ def sortedDictValues(adict):
+ '''
+ Given a dictionary it returns the values of this dict sorted
+ by the keys
+ d = {2:1, 4:1, 1:1, 100:3, 3:5}
+ sortedDictValues(d)
+ [1, 1, 5, 1, 3]
+ '''
+ keys = adict.keys()
+ keys.sort()
+ return map(adict.get, keys)
+
+# -------------------------------------------------------------------------------
+
+def extraCopy (affiliation_name, path):
+ '''
+ @deprecated: replaced with extraCopySciCore
+ Handles the extra copies of the data for transfer with datamover via the
+ bc2 network to the FMI and BIOCENTER
+ For the BIOCENTER there is a folder created in which all data gets into
+ '''
+ if (affiliation_name in AFFILIATION):
+ if (affiliation_name == 'BIOCENTER_BASEL' or affiliation_name == 'NEUROSTEMX' ):
+ dirname = AFFILIATION[affiliation_name] + datetime.now().strftime("%Y-%m-%d")
+ if not os.path.exists(dirname):
+ os.mkdir(dirname)
+ shutil.copy(path, dirname)
+ else:
+ shutil.copy(path, AFFILIATION[affiliation_name])
+
+# -------------------------------------------------------------------------------
+
+def extraCopySciCore (affiliation_name, filePath, destinationFolder=""):
+ '''
+ Handles the extra copies of the data for transfer with datamover for SCICORE
+ '''
+
+ #dropBoxFolder = '/tmp/scicore'
+ dropBoxFolder = '/links/shared/dsu/dss/customers/biozentrum_scicore/drop-box'
+ basename = os.path.basename(filePath)
+
+ print("extraCopySciCore")
+ print basename
+ print affiliation_name
+
+ if (affiliation_name in ['BIOCENTER_BASEL', 'NEUROSTEMX', 'SWISS_TPH']):
+ dirname = os.path.join(dropBoxFolder, destinationFolder)
+ if not os.path.exists(dirname):
+ os.mkdir(dirname)
+ print("COPYING " + filePath + " TO " + dirname)
+ shutil.copy(filePath, dirname)
+
+# -------------------------------------------------------------------------------
+
+def get_sample_properties (transaction, sample):
+
+ sample_properties_dict = {}
+ # returns Map<String, String>
+ sample_properties = sample.getSample().getProperties()
+ sequencing_sample_type = sample.getSampleType()
+ sequencing_sample_code = sample.getCode()
+ sample_properties_dict[SAMPLE_TYPE] = sequencing_sample_type
+ sample_properties_dict[SAMPLE_CODE] = sequencing_sample_code
+
+ for property in sample_properties:
+ code = property.getPropertyType().getSimpleCode()
+ sample_properties_dict[code] = property.tryGetAsString()
+
+ return sample_properties_dict
+
+# -------------------------------------------------------------------------------
+
+def searchParents (search_service, parents):
+
+ # search for the parents
+ sc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ # Get the codes for all parents
+ for parent in parents:
+ parentSubCode = parent.getSubCode()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode));
+ # all parents of the flow lane
+ foundParents = search_service.searchForSamples(sc)
+
+ return foundParents
+
+# -------------------------------------------------------------------------------
+
+def sanitizeString(myString):
+ return re.sub('[^A-Za-z0-9]+', '_', myString)
+
+# -------------------------------------------------------------------------------
+
+def searchSample (sample_code, search_service):
+ sc = SearchCriteria()
+ print('Searching sample: '+ str(sample_code))
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sample_code));
+ foundSamples = search_service.searchForSamples(sc)
+ return foundSamples
+
+
+def renameFiles (fastq_files, undetermined, flow_cell_id):
+
+ newFastqFileList = []
+ for file in fastq_files:
+ if undetermined:
+ folder = os.path.dirname(file)
+ fileName = os.path.basename(file)
+ filepart, suffix = fileName.split('.',1)
+ new_file = folder + "/" + flow_cell_id + '_' + filepart + "." + suffix
+ print ("Renaming file " + file + " to " + new_file)
+ os.rename(file, new_file)
+ else:
+ new_file = file
+ newFastqFileList.append(new_file)
+ return newFastqFileList
+
+# -------------------------------------------------------------------------------
+
+def put_files_to_dataset (transaction, dataSet, fastq_files, folder_name, flow_cell_id, affiliation_name, undetermined):
+
+ for file in fastq_files:
+ extraCopySciCore (affiliation_name, file, folder_name)
+ transaction.moveFile(file, dataSet, folder_name)
+
+# -------------------------------------------------------------------------------
+
+def split_incoming_folder_name (name):
+ split=name.split("_")
+
+ # expected incoming Name, e.g.: BSSE_QGF_22266_H0W8YBGXX_1
+ if (len(split) == 5):
+ sample_code = '-'.join([split[0], split[1], split[2]])
+ flowCellId = split[3]
+ flowLane = split[-1]
+ undetermined = False
+
+ # expected Undetermined_H0W8YBGXX
+ if (len(split) == 2):
+ sample_code = ''
+ flowCellId = split[-1]
+ flowLane = "1"
+ undetermined = True
+
+ incoming_sample = flowCellId + ':' + flowLane
+ return sample_code, flowCellId, flowLane, incoming_sample, undetermined
+
+# -------------------------------------------------------------------------------
+
+def get_vocabulary_descriptions (transaction, vocabulary_name):
+ vocabulary_descriptions_dict = {}
+ vocabulary = transaction.getVocabulary(vocabulary_name)
+ vocabulary_terms = vocabulary.getTerms()
+ for term in vocabulary_terms:
+ vocabulary_descriptions_dict[term.getCode()] = term.getDescription()
+ return vocabulary_descriptions_dict
+
+# -------------------------------------------------------------------------------
+
+def process(transaction):
+
+ undetermined = False
+
+ print("\n" + str(datetime.now()))
+
+ incomingPath = transaction.getIncoming().getAbsolutePath()
+ name = transaction.getIncoming().getName()
+ print("register-lane-nextseq.py is processing: " + name)
+ sample_code, flowCellId, flowLane, incoming_sample, undetermined = split_incoming_folder_name (name)
+
+ # get all fastqs
+ fastq_files=getFileNames(incomingPath)
+
+ # BSSE-QGF-22266-H0W8YBGXX-1-654-BC3-TTAGGC_S1_L001_R1_001.fastq.gz
+ # BSSE-QGF-22051-H0T25AGXX-1-1-1-TAAGGCGA-CTCTCTAT_S46_L001_R1_001.fastq.gz
+ first_fastq_file = os.path.basename(fastq_files[0])
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ flowcell_sample_immutable = searchSample (flowCellId, search_service)
+ fcMetaDataDict = get_sample_properties(transaction, flowcell_sample_immutable[0])
+ foundLane = searchSample (incoming_sample, search_service)
+
+ # there should be only one sample because it is unique within one Flow Cell
+ if (len(foundLane) > 1):
+ raise Exception("More than one sample found! No unique code: " + incoming_sample)
+ elif (len(foundLane) == 0):
+ raise Exception("No matching sample found for: " + incoming_sample)
+ else :
+ sample = foundLane[0].getSample()
+ parents = sample.getParents()
+
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("FASTQ_GZ")
+ dataSet.setMeasuredData(False)
+ dataSet.setPropertyValue(INDEX1, DEFAULT_INDEX)
+ dataSet.setPropertyValue(INDEX2, DEFAULT_INDEX)
+ dirName = transaction.createNewDirectory(dataSet,name)
+
+ if not undetermined:
+ newFastqFiles = fastq_files
+ foundSample = searchSample (sample_code, search_service)
+ sequencing_sample = foundSample[0].getSample()
+ experiment = sequencing_sample.getExperiment()
+ sequencing_sample_code = sequencing_sample.getCode()
+ print("sequencing_sample_code: "+ sequencing_sample_code)
+
+ sequencing_sample_properties_dict = get_sample_properties (transaction, foundSample[0])
+
+ if (INDEX1 in sequencing_sample_properties_dict) and (fcMetaDataDict[INDEXREAD1] > 0):
+ #print(sequencing_sample_properties_dict[INDEX1])
+ dataSet.setPropertyValue(INDEX1, sequencing_sample_properties_dict[INDEX1])
+ if (INDEX2 in sequencing_sample_properties_dict) and (fcMetaDataDict[INDEXREAD2] > 0):
+ dataSet.setPropertyValue(INDEX2, sequencing_sample_properties_dict[INDEX2])
+ dataSet.setPropertyValue(EXTERNAL_SAMPLE_NAME, sequencing_sample_properties_dict[EXTERNAL_SAMPLE_NAME])
+
+ if (AFFILIATION_PROPERTY_NAME in sequencing_sample_properties_dict):
+ affiliation_name = sequencing_sample_properties_dict[AFFILIATION_PROPERTY_NAME]
+
+ filepart, suffix = first_fastq_file.split('.',1)
+ meta_data_file_name = filepart.rsplit('_',2)[0] + METADATA_FILE_SUFFIX
+ # get a file from the IDataSetRegistrationTransaction so it is automatically part of the data set
+ meta_data_file_path = transaction.createNewFile(dataSet, name, meta_data_file_name)
+ writeMetadataFile(transaction, name, meta_data_file_path, sequencing_sample_properties_dict,
+ fcMetaDataDict, experiment, affiliation_name, fastq_files, flowLane)
+
+ # Undetermined Files
+ else:
+ affiliation_name = ""
+ affiliation_for_Undetermined = ""
+ newFastqFiles = []
+ lane_parents = searchParents (search_service, parents)
+ newFastqFiles = renameFiles(fastq_files, undetermined, flowCellId)
+ for parent in lane_parents:
+ sequencing_sample_properties_dict = get_sample_properties (transaction, parent)
+ parent_sample = parent.getSample()
+ sample_code = parent_sample.getCode()
+ experiment = parent_sample.getExperiment()
+ if (AFFILIATION_PROPERTY_NAME in sequencing_sample_properties_dict):
+ affiliation_name = sequencing_sample_properties_dict[AFFILIATION_PROPERTY_NAME]
+
+ # Special Sample Types without index (e.g. ILLUMINA_SEQUENCING_NEUROSTEMX_SINGLECELL) are caught here.
+ # as those samples do not have a NCBI ORGANISM TAXONOMY
+ if NCBI_ORGANISM_TAXONOMY not in sequencing_sample_properties_dict:
+ print(sample_code + ": Processing Sample without NCBI ORGANISM TAXONOMY: ILLUMINA_SEQUENCING_NEUROSTEMX_SINGLECELL")
+ meta_data_file_path = transaction.createNewFile(dataSet, name, sample_code + '_' + flowCellId + '_' + first_fastq_file.split('.')[0] + METADATA_FILE_SUFFIX)
+ writeMetadataFile(transaction, name, meta_data_file_path, sequencing_sample_properties_dict,
+ fcMetaDataDict, experiment, affiliation_name, newFastqFiles, flowLane)
+ affiliation_for_Undetermined = affiliation_name
+
+ elif (INDEX1 not in sequencing_sample_properties_dict) and (INDEX2 not in sequencing_sample_properties_dict) and \
+ (sequencing_sample_properties_dict[NCBI_ORGANISM_TAXONOMY] != PHIX_TAXONOMY_ID):
+ print('NONINDEXED sample and Taxonomy id is NOT' + PHIX_TAXONOMY_ID +', probably a pool: ' + sample_code)
+ meta_data_file_path = transaction.createNewFile(dataSet, name, sample_code + '_' + flowCellId + '_' + first_fastq_file.split('.')[0] + METADATA_FILE_SUFFIX)
+ writeMetadataFile(transaction, name, meta_data_file_path, sequencing_sample_properties_dict,
+ fcMetaDataDict, experiment, affiliation_name, newFastqFiles, flowLane)
+ affiliation_for_Undetermined = affiliation_name
+ # PARENTS:
+ else:
+ # Create Parent Meta data
+ print(sample_code + ": Create parent meta data file")
+ meta_data_file_path = transaction.createNewFile(dataSet, name, 'PARENT_' + sample_code + '_' + flowCellId + METADATA_FILE_SUFFIX)
+ writeMetadataFile(transaction, name, meta_data_file_path, sequencing_sample_properties_dict,
+ fcMetaDataDict, experiment, affiliation_name, [], flowLane)
+ continue
+
+ put_files_to_dataset (transaction, dataSet, newFastqFiles, name, flowCellId, affiliation_for_Undetermined, undetermined)
+
+ if foundLane.size() > 0:
+ sa = transaction.getSampleForUpdate(foundLane[0].getSampleIdentifier())
+ sa.setPropertyValue("DATA_TRANSFERRED", create_openbis_timestamp())
+ dataSet.setSample(foundLane[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/plugin.properties
new file mode 100644
index 00000000000..9d5511bd58c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-macs
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-macs.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/register-macs.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/register-macs.py
new file mode 100755
index 00000000000..17a9d5b074c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-macs/register-macs.py
@@ -0,0 +1,22 @@
+
+def process(transaction):
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("MACS_OUTPUT")
+ dataSet.setPropertyValue("MACS_VERSION", "1.4.0RC2")
+ dataSet.setMeasuredData(False)
+
+ incomingPath = incoming.getAbsolutePath()
+
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+
+ # rsplit not in Python 2.2
+ #sampleName = ":".join(incomingPath.split("/")[-1].rsplit("_",1))
+ flowCell = "_".join((incomingPath.split("/")[-1].split("_")[2:-1]))
+ lane = (incomingPath.split("/")[-1]).split("_")[-1]
+ sampleName = flowCell + ":" + lane
+
+ # Set the owner of the data set -- the specified sample
+ sample = transaction.getSample("/BSSE_BEISEL/" + sampleName)
+
+ dataSet.setSample(sample)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-runstatistics/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-runstatistics/plugin.properties
new file mode 100644
index 00000000000..8572688f224
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-runstatistics/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-runstatistics
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-runstatistics.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-runstatistics/register-runstatistics.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-runstatistics/register-runstatistics.py
new file mode 100644
index 00000000000..d7b8b8400d3
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-runstatistics/register-runstatistics.py
@@ -0,0 +1,73 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Registers an incoming directory as a data set in openBIS. The name of the directory is used to
+search for the matching sample.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX
+expected incoming Name for GAII runs: 110812_6353WAAXX
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ incomingFolder = transaction.getIncoming().getName()
+
+ folders=[]
+ folders=os.listdir(incomingPath)
+
+ split=incomingFolder.split("_")
+ if (len(split) == 4):
+ IS_HISEQ_RUN=True
+ if (len(split) == 2):
+ IS_HISEQ_RUN=False
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incomingFolder));
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+
+ # Search for another data set of the same sample and make it a child of it
+ sampleSc = SearchCriteria()
+ sampleSc.addSubCriteria(SearchSubCriteria.createSampleContainerCriteria(sc))
+ foundContainedSamples = search_service.searchForSamples(sampleSc)
+ if foundContainedSamples.size() > 0:
+ for fcs in range(0,foundContainedSamples.size()):
+ dataSet = transaction.createNewDataSet("RUNINFO")
+ dataSet.setMeasuredData(False)
+ dataSet.setSample(foundContainedSamples[fcs])
+ # Add the incoming file into the data set
+ shutil.copytree(incomingPath, incomingPath + "_" + str(fcs+1))
+ transaction.moveFile(incomingPath + "_" + str(fcs+1), dataSet)
+
+ shutil.rmtree(incomingPath)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-thumbnails/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-thumbnails/plugin.properties
new file mode 100644
index 00000000000..5b89e279f2f
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-thumbnails/plugin.properties
@@ -0,0 +1,12 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-thumbnails
+#incoming-dir = /links/sonas/cisd/store/incoming-flowCell
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-thumbnails.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-thumbnails/register-thumbnails.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-thumbnails/register-thumbnails.py
new file mode 100644
index 00000000000..60937ed4520
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-thumbnails/register-thumbnails.py
@@ -0,0 +1,55 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Registers an incoming directory as a data set in openBIS. The name of the directory is used to
+search for the matching sample.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX
+expected incoming Name for GAII runs: 110812_6353WAAXX
+
+@author:
+Manuel Kohler
+'''
+
+import xml.etree.ElementTree as etree
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName()
+
+ dataSet = transaction.createNewDataSet("THUMBNAILS")
+
+ # Create a data set and set type
+ dataSet.setMeasuredData(False)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name));
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+ dataSet.setSample(foundSamples[0])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned-miseq/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned-miseq/plugin.properties
new file mode 100644
index 00000000000..fd7c9481927
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned-miseq/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${root}/dss/register-unaligned-miseq
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-unaligned-miseq.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned-miseq/register-unaligned-miseq.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned-miseq/register-unaligned-miseq.py
new file mode 100755
index 00000000000..97397b4e0bc
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned-miseq/register-unaligned-miseq.py
@@ -0,0 +1,176 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Expects as incoming folder: <FlowCell>/Unaligned_no_mismatch
+
+@note:
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import glob
+import shutil
+import time
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+BASECALL_STATS_FOLDER = 'Basecall_Stats_'
+REGEX_FILES = '*.*'
+REGEX_MAKEFILE = 'Make*'
+REGEX_LANES='/P*'
+REGEX_UNDETERMINED = '/U*/Sample*'
+UNALIGNED_FOLDER='Unaligned_no_mismatch'
+LANE_FOLDER='/links/shared/dsu/dss/register-lane-miseq/'
+MARKER_STRING='.MARKER_is_finished_'
+
+def touch_markerfile(filename):
+ try:
+ # do a touch
+ open(filename, 'w').close()
+ except:
+ print('Could not touch ' + filename)
+
+def searchForLaneParents(transaction, sampleCode):
+
+ search_service = transaction.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sampleCode))
+ foundSamples = search_service.searchForSamples(sc)
+ # there should be only one sample because it is unique within one Flow Cell
+ if (len(foundSamples) > 1):
+ raise Exception("More than one sample found! No unique code: " + sampleCode)
+ elif (len(foundSamples) == 0):
+ raise Exception("No matching sample found for: " + sampleCode)
+ else :
+ sample = foundSamples[0].getSample()
+ parents = sample.getParents()
+
+ # search for the parents
+ sc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ # Get the codes for all parents
+ for parent in parents:
+ parentSubCode = parent.getSubCode()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode));
+ # all parents of the flow lane
+ foundParents = search_service.searchForSamples(sc)
+
+ parentCodeList = []
+
+ for foundParent in foundParents:
+ parent = foundParent.getSample()
+ # ArrayList
+ parentProperties = parent.getProperties()
+ # just get the current code
+ parentCode = parent.getCode()
+ parentCodeList.append(parentCode)
+ #print("Found parent code: "+ parentCode)
+
+ return parentCodeList
+
+
+def renameFiles(transaction, dir, flowcellName):
+ # Limit of Samples when the Sample Code is still used in the renaming. If Number of Samples is
+ # bigger than this number, we just write the number in the file name.
+
+ MAX_SAMPLES = 20
+ FACILITY_CODE = "BSSE_QGF_"
+
+ for root, dirs, files in os.walk(dir):
+ for file in files:
+ lane = file.split("_")[0][-1]
+ if lane.isdigit():
+ sampleCode = flowcellName + ":" + lane
+ print sampleCode
+ parentCodeList = searchForLaneParents(transaction, sampleCode)
+ print parentCodeList
+ length = len(parentCodeList)
+ if length > MAX_SAMPLES:
+ # BSSE_QGF_96_samples_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz
+ os.rename(root + '/' + file, root + "/" + FACILITY_CODE + str(length) + "_samples_" + flowcellName + "_" + file)
+ else:
+ # BSSE_QGF_10001_10002_10003_10004_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz
+ SampleCodeString = "_".join([(e.split("-")[-1]) for e in parentCodeList])
+ os.rename(root + '/' + file, root + "/" + FACILITY_CODE + SampleCodeString + "_" + flowcellName + "_" + file)
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName()
+
+ split=name.split("_")
+ DSTYPE='ILLUMINA_MISEQ_OUTPUT'
+ #flowcell=name.split('_')[-1].split('-')[-1]
+ flowcell=name.split('_')[-1]
+
+ #move Lanes into a different drop box
+ laneList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + REGEX_LANES)
+ laneList.sort()
+
+ undeterminedList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + REGEX_UNDETERMINED)
+ undeterminedList.sort()
+
+ # add the Flow Cell Name to the Undetermined FASTQ files
+ [renameFiles(transaction, dir, name) for dir in undeterminedList]
+
+ # Multiplexing:
+ # First move the Undetermined reads to the other ones
+ [shutil.move(undeterminedLane, laneList[int(undeterminedLane.split('/')[-1][-1])-1] +'/' + undeterminedLane.split('/')[-1]) for undeterminedLane in undeterminedList]
+
+ [shutil.move(lane, LANE_FOLDER+lane.split('/')[-1]) for lane in laneList]
+ markerFileList = [touch_markerfile(LANE_FOLDER+MARKER_STRING+lane.split('/')[-1]) for lane in laneList]
+
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("BASECALL_STATS")
+ dataSet.setMeasuredData(False)
+
+ # Build up a list of file which are part of the data set
+ fileList=glob.glob(incomingPath + '/'+ UNALIGNED_FOLDER + '/' + REGEX_FILES)
+ [fileList.append(i) for i in glob.glob(incomingPath + '/' + UNALIGNED_FOLDER +'/' +REGEX_MAKEFILE)]
+
+ # Add the incoming file into the data set
+ transaction.createNewDirectory(dataSet, UNALIGNED_FOLDER)
+ # move all files is data set
+ [transaction.moveFile(file, dataSet, UNALIGNED_FOLDER) for file in fileList]
+ # move base call stat dir into data set
+ print("flowcell: "+flowcell)
+ transaction.moveFile(incomingPath + '/' + UNALIGNED_FOLDER + '/' + BASECALL_STATS_FOLDER + flowcell, dataSet, UNALIGNED_FOLDER + '/')
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, name))
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ dataSet.setSample(foundSamples[0])
+
+ # Search for another data set of the same sample and make it a child of it
+ dataSetSc = SearchCriteria()
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DSTYPE))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ if foundDataSets.size() > 0:
+ dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets])
+
+ shutil.rmtree(incomingPath)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/plugin.properties
new file mode 100644
index 00000000000..9c8c317b60d
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-unaligned
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-unaligned.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/register-unaligned.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/register-unaligned.py
new file mode 100755
index 00000000000..c8e364f1795
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-unaligned/register-unaligned.py
@@ -0,0 +1,195 @@
+'''
+@copyright:
+2012 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Expects as incoming folder: <FlowCell>/Unaligned_no_mismatch
+
+@note:
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import glob
+import shutil
+import time
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+BASECALL_STATS_FOLDER = 'Basecall_Stats_'
+REGEX_FILES = '*.*'
+REGEX_MAKEFILE = 'Make*'
+REGEX_LANES='/P*'
+REGEX_UNDETERMINED = '/U*/Sample*'
+LANE_FOLDER='/links/shared/dsu/dss/register-lane-hiseq/'
+MARKER_STRING='.MARKER_is_finished_'
+
+def touch_markerfile(filename):
+ try:
+ # do a touch
+ open(filename, 'w').close()
+ except:
+ print('Could not touch ' + filename)
+
+def searchForLaneParents(transaction, sampleCode):
+
+ search_service = transaction.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, sampleCode))
+ foundSamples = search_service.searchForSamples(sc)
+ # there should be only one sample because it is unique within one Flow Cell
+ if (len(foundSamples) > 1):
+ raise Exception("More than one sample found! No unique code: " + sampleCode)
+ elif (len(foundSamples) == 0):
+ raise Exception("No matching sample found for: " + sampleCode)
+ else :
+ sample = foundSamples[0].getSample()
+ parents = sample.getParents()
+
+ # search for the parents
+ sc = SearchCriteria()
+ # set the Search Criteria to an OR condition, default is AND
+ sc.setOperator(SearchCriteria.SearchOperator.MATCH_ANY_CLAUSES)
+ # Get the codes for all parents
+ for parent in parents:
+ parentSubCode = parent.getSubCode()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, parentSubCode));
+ # all parents of the flow lane
+ foundParents = search_service.searchForSamples(sc)
+
+ parentCodeList = []
+
+ for foundParent in foundParents:
+ parent = foundParent.getSample()
+ # ArrayList
+ parentProperties = parent.getProperties()
+ # just get the current code
+ parentCode = parent.getCode()
+ parentCodeList.append(parentCode)
+ #print("Found parent code: "+ parentCode)
+
+ return parentCodeList
+
+
+def renameFiles(transaction, dir, flowcellName):
+ # Limit of Samples when the Sample Code is still used in the renaming. If Number of Samples is
+ # bigger than this number, we just write the number in the file name.
+
+ MAX_SAMPLES = 20
+ FACILITY_CODE = "BSSE_QGF_"
+
+ for root, dirs, files in os.walk(dir):
+ for file in files:
+ lane = file.split("_")[0][-1]
+ if lane.isdigit():
+ sampleCode = flowcellName + ":" + lane
+ print sampleCode
+ parentCodeList = searchForLaneParents(transaction, sampleCode)
+ print parentCodeList
+ length = len(parentCodeList)
+ if length > MAX_SAMPLES:
+ # BSSE_QGF_96_samples_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz
+ os.rename(root + '/' + file, root + "/" + FACILITY_CODE + str(length) + "_samples_" + flowcellName + "_" + file)
+ else:
+ # BSSE_QGF_10001_10002_10003_10004_C1A8YACXX_Undetermined_L008_R1_001.fastq.gz
+ SampleCodeString = "_".join([(e.split("-")[-1]) for e in parentCodeList])
+ os.rename(root + '/' + file, root + "/" + FACILITY_CODE + SampleCodeString + "_" + flowcellName + "_" + file)
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ name = transaction.getIncoming().getName().split('-')[0]
+ print("incomingPath")
+ print(incomingPath)
+ UNALIGNED_FOLDER=glob.glob(os.path.join(incomingPath, 'Unaligned_[0-9]'))[0]
+ #UNALIGNED_FOLDER=incomingPath
+
+ split=name.split("_")
+ if (len(split) == 4):
+ DSTYPE='ILLUMINA_HISEQ_OUTPUT'
+ flowcell=name.split("_")[-1][1:]
+ if (len(split) ==2):
+ DSTYPE='ILLUMINA_GA_OUTPUT'
+ flowcell=name.split("_")[-1]
+
+ #move Lanes into a different drop box
+ laneList=glob.glob(UNALIGNED_FOLDER + REGEX_LANES)
+ laneList.sort()
+ print ("-------------- Lane List --------------")
+ print laneList
+
+ undeterminedList=glob.glob(UNALIGNED_FOLDER + REGEX_UNDETERMINED)
+ print ("GLOB:")
+ print(UNALIGNED_FOLDER + REGEX_UNDETERMINED)
+ undeterminedList.sort()
+ print ("undeterminedList: ")
+ print (undeterminedList)
+
+ # add the Flow Cell Name to the Undetermined FASTQ files
+ [renameFiles(transaction, dir, name) for dir in undeterminedList]
+
+ # Multiplexing:
+ # First move the Undetermined reads to the other ones
+ try:
+ #[shutil.move(undeterminedLane, laneList[int(undeterminedLane.split('/')[-1][-1])-1] +'/' + undeterminedLane.split('/')[-1]) for undeterminedLane in undeterminedList]
+ print("SHUTIL:")
+ print(undeterminedList[0], os.path.join(laneList[0], os.path.basename(undeterminedList[0])))
+ shutil.move(undeterminedList[0], os.path.join(laneList[0], os.path.basename(undeterminedList[0])))
+ except:
+ print ("laneList is not matching the total number of lanes (Missing Project<xxx> folder?)")
+
+ [shutil.move(lane, LANE_FOLDER+lane.split('/')[-1]) for lane in laneList]
+ markerFileList = [touch_markerfile(LANE_FOLDER+MARKER_STRING+lane.split('/')[-1]) for lane in laneList]
+
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("BASECALL_STATS")
+ dataSet.setMeasuredData(False)
+
+ # Build up a list of file which are part of the data set
+ fileList=glob.glob(UNALIGNED_FOLDER + '/' + REGEX_FILES)
+ [fileList.append(i) for i in glob.glob( UNALIGNED_FOLDER +'/' +REGEX_MAKEFILE)]
+
+ basename_folder = os.path.basename(UNALIGNED_FOLDER)
+ # Add the incoming file into the data set
+ transaction.createNewDirectory(dataSet, basename_folder)
+ # move all files in data set
+ [transaction.moveFile(file, dataSet, basename_folder) for file in fileList]
+ print("MOVE:")
+ print(os.path.join(UNALIGNED_FOLDER, BASECALL_STATS_FOLDER + flowcell))
+ transaction.moveFile(os.path.join(UNALIGNED_FOLDER, BASECALL_STATS_FOLDER + flowcell), dataSet, basename_folder)
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, transaction.getIncoming().getName().replace("-", ":")))
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+ dataSet.setSample(foundSamples[0])
+
+ # Search for another data set of the same sample and make it a child of it
+ dataSetSc = SearchCriteria()
+ dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, DSTYPE))
+ dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ foundDataSets = search_service.searchForDataSets(dataSetSc)
+ if foundDataSets.size() > 0:
+ dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets])
+
+ #shutil.rmtree(incomingPath)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/plugin.properties
new file mode 100644
index 00000000000..c78a57ca244
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${incoming-root-dir}/register-undetermined
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-undetermined.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/register-undetermined.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/register-undetermined.py
new file mode 100644
index 00000000000..a8c214c4cda
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register-undetermined/register-undetermined.py
@@ -0,0 +1,57 @@
+'''
+@copyright:
+2014 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@author:
+Manuel Kohler
+'''
+
+import os
+import shutil
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+def renameFiles(dir, flowcellName):
+ print dir
+ print flowcellName
+ for root, dirs, files in os.walk(dir):
+ for file in files:
+ print root + file
+ os.rename(root + '/' + file, root + "/" + flowcellName + "_" + file)
+
+
+def process(transaction):
+
+ # 140724_M01761_0084_000000000-A8TNL/
+
+ incomingPath = transaction.getIncoming().getPath()
+ incomingFolder = transaction.getIncoming().getName()
+ flowLane = incomingFolder + ":1"
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowLane))
+ foundSamples = search_service.searchForSamples(sc)
+
+ if foundSamples.size() > 0:
+
+ dataSet = transaction.createNewDataSet("UNDETERMINED_READS_DISTRIBUTION")
+ dataSet.setMeasuredData(False)
+ dataSet.setSample(foundSamples[0])
+ transaction.moveFile(incomingPath, dataSet)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/plugin.properties
new file mode 100644
index 00000000000..b5620f9aa35
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/plugin.properties
@@ -0,0 +1,11 @@
+#
+# Drop box for registering a flow cell output as a data set
+#
+# Variables:
+# incoming-root-dir
+# Path to the directory which contains incoming directories for drop boxes.
+incoming-dir = ${root}/dss/register-aggregated-basecall-stats
+incoming-data-completeness-condition = marker-file
+top-level-data-set-handler = ch.systemsx.cisd.etlserver.registrator.api.v2.JythonTopLevelDataSetHandlerV2
+script-path = register-aggregated-basecall-stats.py
+storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcessor
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/register-aggregated-basecall-stats.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/register-aggregated-basecall-stats.py
new file mode 100644
index 00000000000..b9bfdfb031c
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/drop-boxes/register_aggregated-basecall-stats/register-aggregated-basecall-stats.py
@@ -0,0 +1,72 @@
+'''
+@copyright:
+2014 ETH Zuerich, CISD
+
+@license:
+Licensed under the Apache License, Version 2.0 (the "License");
+you may not use this file except in compliance with the License.
+You may obtain a copy of the License at
+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
+distributed under the License is distributed on an "AS IS" BASIS,
+WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+See the License for the specific language governing permissions and
+limitations under the License.
+
+@description:
+Registers an incoming directory as a data set in openBIS. The name of the directory is used to
+search for the matching sample.
+
+@note:
+print statements go to: <openBIS_HOME>/datastore_server/log/startup_log.txt
+expected incoming Name for HiSeq runs: 110715_SN792_0054_BC035RACXX
+expected incoming Name for GAII runs: 110812_6353WAAXX
+expected incoming Name for MiSeq runs: 121218_M00721_0017_000000000-A0T19
+
+@author:
+Manuel Kohler
+'''
+
+import os
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchSubCriteria
+
+def process(transaction):
+
+ incomingPath = transaction.getIncoming().getPath()
+ incomingFolder = transaction.getIncoming().getName()
+
+ folders=os.listdir(incomingPath)
+
+ # expected incoming Name, e.g.: 110715_SN792_0054_BC035RACXX
+
+ # Create a data set and set type
+ dataSet = transaction.createNewDataSet("AGGREGATED_BASECALL_STATS")
+ dataSet.setMeasuredData(False)
+
+ dataSet.setPropertyValue("MISMATCH_IN_INDEX", "NONE")
+
+ # Get the search service
+ search_service = transaction.getSearchService()
+
+ # Add the incoming file into the data set
+ transaction.moveFile(incomingPath, dataSet)
+
+ # Search for the sample
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, incomingPath))
+ foundSamples = search_service.searchForSamples(sc)
+
+
+ if foundSamples.size() > 0:
+ dataSet.setSample(foundSamples[0])
+
+ # Search for another data set of the same sample
+ #dataSetSc = SearchCriteria()
+ #dataSetSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, 'ILLUMINA_HISEQ_OUTPUT'))
+ #dataSetSc.addSubCriteria(SearchSubCriteria.createSampleCriteria(sc))
+ #foundDataSets = search_service.searchForDataSets(dataSetSc)
+ #if foundDataSets.size() > 0:
+ # dataSet.setParentDatasets([ds.getDataSetCode() for ds in foundDataSets])
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/setInvoiceSent/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/setInvoiceSent/plugin.properties
new file mode 100644
index 00000000000..253d1a19bb6
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/setInvoiceSent/plugin.properties
@@ -0,0 +1,3 @@
+label = Set Invoice Sent property
+class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.JythonIngestionService
+script-path = script.py
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/setInvoiceSent/script.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/setInvoiceSent/script.py
new file mode 100644
index 00000000000..a01000b8dc9
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/setInvoiceSent/script.py
@@ -0,0 +1,65 @@
+def process(tr, parameters, tableBuilder):
+
+ import subprocess
+ import os
+ import re
+ from java.util import EnumSet
+ from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+ from ch.systemsx.cisd.openbis.dss.client.api.v1 import OpenbisServiceFacadeFactory
+ from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SampleFetchOption
+
+ def sanitizeString(myString):
+ myString = myString.replace(u'ä', 'ae')
+ myString = myString.replace(u'ü', 'ue')
+ myString = myString.replace(u'ö', 'oe')
+ return re.sub('[^A-Za-z0-9]+', '_', myString)
+
+ sampleId = parameters.get("sampleId")
+ plainPi = parameters.get("pI")
+ flowcellId = sampleId.split('/')[-1]
+
+ # Search for the sample
+ search_service = tr.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowcellId));
+ myFC = search_service.searchForSamples(sc)
+ try:
+ assert myFC.size() == 1
+ except AssertionError:
+ print (str(myFC.size()) + " " + flowcellId)
+
+ for p in myFC:
+ numberOfLanes = int(p.getPropertyValue('LANECOUNT'))
+
+ for lane in range(1, numberOfLanes + 2):
+ myLane = flowcellId + ":" + str(lane)
+ laneSc = SearchCriteria();
+ laneSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, myLane));
+ laneList = search_service.searchForSamples(laneSc)
+
+ if not laneList:
+ myLane = flowcellId + ":1_" + str(lane)
+ print("myLane: " + myLane)
+ laneSc = SearchCriteria();
+ laneSc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, myLane));
+ laneList = search_service.searchForSamples(laneSc)
+
+ for l in laneList:
+ laneParents = l.getParentSampleIdentifiers()
+
+ for sampleCode in laneParents:
+ Sample = tr.getSample(sampleCode)
+ FullSamplePi = Sample.getPropertyValue('PRINCIPAL_INVESTIGATOR_NAME')
+ samplePi = sanitizeString(FullSamplePi)
+ print samplePi + " == " + sanitizeString(plainPi) + " ?"
+
+ if (samplePi == sanitizeString(plainPi)):
+ print "Setting Property 'INVOICE_SENT' to true for sample: " + sampleCode
+ updateableSample = tr.getSampleForUpdate(sampleCode)
+ updateableSample.setPropertyValue('INVOICE', 'True')
+
+ tableBuilder.addHeader("CSV")
+
+ row = tableBuilder.addRow()
+ row.setCell("CSV",plainPi)
+
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerCreateSampleSheet/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerCreateSampleSheet/plugin.properties
new file mode 100644
index 00000000000..f759e0ab0f4
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerCreateSampleSheet/plugin.properties
@@ -0,0 +1,3 @@
+label = Trigger Sample Sheet Creation
+class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.JythonAggregationService
+script-path = script.py
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerCreateSampleSheet/script.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerCreateSampleSheet/script.py
new file mode 100644
index 00000000000..6fbad460abe
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerCreateSampleSheet/script.py
@@ -0,0 +1,44 @@
+def aggregate(parameters, tableBuilder):
+
+ import subprocess
+ sampleSheetBinary = "/links/application/dsu/createSampleSheet/createSampleSheet.sh"
+ sampleSheetBinaryMiSeq = "/links/application/dsu/createSampleSheet/createSampleSheet_miseq.sh"
+
+ miSeqPath = "/links/shared/dsu/runs/yoda"
+
+ sampleId = parameters.get("sampleId")
+ sendEmail = parameters.get("sendEmail")
+ miSeqRun = parameters.get("miSeqRun")
+ flowcellId = sampleId.split('/')[-1]
+
+ if '-' in flowcellId:
+ flowCellName = flowcellId.split('_')[3]
+ else:
+ flowCellName = flowcellId.split('_')[3][1:]
+
+ sampleSheetFileName = "SampleSheet_" + flowCellName + ".csv"
+
+ if miSeqRun:
+ binary = sampleSheetBinaryMiSeq
+ else:
+ binary = sampleSheetBinary
+
+ sampleSheet = subprocess.Popen([binary, "-f", flowcellId, "-v", "-o", miSeqPath, "=l", "win32"], stdout=subprocess.PIPE)
+ result = sampleSheet.stdout.read()
+ ssList = result.split('\n')
+ if sendEmail:
+ mailService.createEmailSender().withSubject("Sample Sheet for flow cell: " + flowcellId).withAttachedText(result, sampleSheetFileName).send()
+
+ tableBuilder.addHeader("CSV")
+
+ row = tableBuilder.addRow()
+ row.setCell("CSV","Created Sample Sheet "+ sampleSheetFileName + " and stored here: " + "Y:/yoda")
+ row = tableBuilder.addRow()
+ row.setCell("CSV",200*"-")
+
+ for line in ssList:
+ row = tableBuilder.addRow()
+ row.setCell("CSV",line)
+
+ row = tableBuilder.addRow()
+ row.setCell("CSV",200*"-")
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/plugin.properties
new file mode 100644
index 00000000000..dd31feda599
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/plugin.properties
@@ -0,0 +1,3 @@
+label = Trigger Invoice Creation
+class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.JythonIngestionService
+script-path = script.py
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/script.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/script.py
new file mode 100644
index 00000000000..5161cd0f050
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerInvoice/script.py
@@ -0,0 +1,75 @@
+def process(tr, parameters, tableBuilder):
+
+ import subprocess
+ import os
+ from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+ base = "/home/sbsuser/openbis/createInvoices/"
+ createInvoiceBinary = base + "createInvoices.sh"
+ outDir = base + "invoices/"
+ magicString = "@Invoice@"
+
+ invoiceSentList = []
+ tmpIndexList = []
+
+ sampleId = parameters.get("sampleId")
+ sendEmail = parameters.get("sendEmail")
+ flowcellId = sampleId.split('/')[-1]
+ invoiceList = subprocess.Popen([createInvoiceBinary, "-f", flowcellId, "-o", outDir, "-d"], stdout=subprocess.PIPE)
+ result = invoiceList.stdout.read()
+
+ ssList = result.split('\n')
+ print ssList
+
+ for idx, element in enumerate(ssList):
+ if element.startswith(magicString):
+ tmpIndexList.append(idx)
+ invoiceSentList.append(element.split('@')[-1])
+
+ tmpIndexList.sort(reverse=True)
+ for idx in tmpIndexList:
+ ssList.pop(idx)
+
+ ssList = ssList[:-1]
+
+ if sendEmail:
+ mailService.createEmailSender().withSubject("Invoice for flow cell: " + flowcellId).withAttachedText(result, "Invoice_" + flowcellId + ".csv").send()
+
+ # Search for the sample
+ search_service = tr.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.CODE, flowcellId));
+ myFC = search_service.searchForSamples(sc)
+ try:
+ assert myFC.size() == 1
+ except AssertionError:
+ print (str(myFC.size()) + " " + myFC.getCode())
+
+ def attachFile(fileToAttach):
+ f = open(fileToAttach, 'r')
+ print ("Attaching " + fileToAttach + " to " + myFC[0].getSampleIdentifier())
+ updateableSample = tr.getSampleForUpdate(myFC[0].getSampleIdentifier())
+ updateableSample.addAttachment(fileToAttach, "Invoice for Flow Cell " + flowcellId, "Invoice", f.read())
+
+ column1 = "CSV"
+ column2 = "invoiceFlag"
+
+ tableBuilder.addHeader(column1)
+ tableBuilder.addHeader(column2)
+
+ for pI in invoiceSentList:
+ print pI
+
+ for line in ssList:
+ XLXSfile = os.path.split(line)[-1]
+ print ("___________________________")
+ print line
+ print "File: " + XLXSfile
+ #line = '<a target="_self" href="' + filePath + XLXSfile + '">' + XLXSfile + '</a>'
+ attachFile(outDir + XLXSfile)
+ row = tableBuilder.addRow()
+ row.setCell(column1,"Attached file as " + XLXSfile)
+
+ for pI in invoiceSentList:
+ row = tableBuilder.addRow()
+ row.setCell(column2, pI)
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/lib/jyson-1.0.2.jar b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/lib/jyson-1.0.2.jar
new file mode 100644
index 0000000000000000000000000000000000000000..9988738cfce62d14d74610118a57eb604d66d2fe
GIT binary patch
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HcmV?d00001
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/plugin.properties
new file mode 100644
index 00000000000..f8682933750
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/plugin.properties
@@ -0,0 +1,3 @@
+label = Trigger bee job
+class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.JythonIngestionService
+script-path = script.py
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/script.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/script.py
new file mode 100644
index 00000000000..dd43a63be7e
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggerbee/script.py
@@ -0,0 +1,194 @@
+from __future__ import with_statement
+import subprocess
+import os
+import time
+import shutil
+import sys
+import datetime
+import httplib
+import urllib
+
+from com.xhaus.jyson import JysonCodec as json
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+ORGANISM_CODE = 'NCBI_ORGANISM_TAXONOMY'
+
+# here we have a lookup table to look for the the bowtie2 index names given
+# by the NCBI/openBIS taxonomy
+
+ORGANISM_DICT = {"10090" : "mm10", # Mouse
+ "9606" : "hg19", # Human
+ "7227" : "dm3", # Fruit fly
+ "10847" : "phix", # phiX
+ "4932" : "sacCer3", # baker's yeast
+ "1773" : "myc_tub_h37rv_2", # M. tuberculosis H37Rv
+}
+
+column1 = "resultCode"
+column2 = "resultString"
+
+def process(tr, parameters, tableBuilder):
+ '''
+ Main function which controls the output
+ '''
+ method = parameters.get("method")
+ permId = parameters.get("permId")
+ userId = parameters.get("userId")
+
+ tableBuilder.addHeader(column1)
+ tableBuilder.addHeader(column2)
+
+ if method == "startJob":
+ print "Start the job"
+ startJob(tr, parameters, userId, tableBuilder)
+
+ if method == "pollJob":
+ pollJob(tr, parameters, userId, tableBuilder)
+
+# --------------------------------------------------------------------
+
+def startJob(tr, parameters, userId, tableBuilder):
+ '''
+ Starts job
+ '''
+ permId = parameters.get("permId")
+ sendEmail = parameters.get("sendEmail")
+ bowtieParam = parameters.get("bowtieParam")
+ clusteroption = parameters.get("clusteroptionsParam")
+
+ outputDict = {}
+ result = ""
+
+ def searchDs (tr, dscode):
+ # search for the data set
+ search_service = tr.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch( \
+ SearchCriteria.MatchClauseAttribute.CODE, dscode));
+ myds = search_service.searchForDataSets(sc)
+ try:
+ assert myds.size() == 1
+ except assertionerror:
+ print (str(myds.size()) + " " + myds.getcode())
+ return myds
+
+ # --------------------------------------------------------------------
+
+ def searchSample (tr, sampleCode):
+ search_service = tr.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch( \
+ SearchCriteria.MatchClauseAttribute.CODE, sampleCode));
+ searchedSamples = search_service.searchForSamples(sc)
+ try:
+ assert searchedSamples.size() == 1
+ except assertionerror:
+ print (str(searchedSamples.size()) + " " + searchedSamples.getcode())
+ return searchedSamples
+
+ # --------------------------------------------------------------------
+
+ dataSet = searchDs(tr, permId)
+ connectedSampleId = dataSet[0].getSample().getSampleIdentifier()
+
+ # We have to do a second search for the sample, otherwise the peroperties
+ # are not present when using dataSet[0].getSample() fro accessing the sample
+
+ content = contentProvider.getContent(permId)
+ #print content
+ pList = content.listMatchingNodes(".*.fastq.gz")
+ #print pList
+
+ stop = False
+ taxonomyURL = "http://www.ncbi.nlm.nih.gov/Taxonomy/Browser/wwwtax.cgi?id="
+
+ def returnDict(outputDict):
+ for entry in outputDict:
+ row = tableBuilder.addRow()
+ row.setCell(column1, outputDict[entry][0])
+ row.setCell(column2, outputDict[entry][1])
+
+ if pList:
+ sampleCode = "-".join(str(pList[0].tryGetFile()).split("/")[-1].split("_")[0:3])
+
+ print sampleCode
+ foundSample = searchSample(tr, sampleCode)
+ organism = foundSample[0].getPropertyValue(ORGANISM_CODE)
+
+ if organism:
+ print organism
+ try:
+ org = ORGANISM_DICT[organism]
+ outputDict[0] = [0, "Found " + org + "[" +organism + \
+ "] as reference genome - defined in Sample " + \
+ sampleCode ]
+ except:
+ outputDict[0] = [1, 'Given organism <a href=\"' + taxonomyURL + organism + '\" target=\"_blank\">' + organism + '</a> from sample ' + sampleCode + ' is not available as bowtie2 index.']
+ #sys.exit("Given organism not available as bowtie2 index")
+ stop = True
+
+ if not bowtieParam:
+ bowtieParam = '--phred33'
+
+ if not stop:
+ headers = {"Content-type": "application/x-www-form-urlencoded", "Accept": "text/plain"}
+ workflow = open('/home/sbsuser/bee/bowtie2_bee.xml').read()
+ params = urllib.urlencode({'workflow': workflow, 'api.datasetID': permId, 'api.organism': ORGANISM_DICT[organism], 'api.bowtieParams':bowtieParam, 'api.user' : userId})
+ conn = httplib.HTTPConnection("127.0.0.1:9999")
+ conn.request("POST", "/apiv1/processes", params, headers)
+ resp = conn.getresponse()
+ conn.close()
+ outputDict[1] = [0, "Job started..."]
+ #outputDict[1] = [0, str(resp.read())]
+ #outputDict[2] = [0, str(resp.status)]
+
+ else:
+ outputDict[0] = [1, "No organism specified in the sample. Making an alignment is not possible."]
+
+ #sampleId, fcDate, seqSn, runningNumber, fcID, lane, index, fullLane, readNumber, fileNumber = filename.split('-')[-1].split('_')
+
+ returnDict(outputDict)
+
+# --------------------------------------------------------------------
+
+def pollJob(tr, parameters, userId, tableBuilder):
+
+ permId = parameters.get("permId")
+
+ conn = httplib.HTTPConnection("127.0.0.1:9999")
+ conn.request("GET", "/apiv1/processes?inputId=" + permId)
+ resp = conn.getresponse().read()
+ conn.close()
+
+ if resp != 'null':
+ data = json.loads(resp)
+ processes = data['workflowDTO']
+ strOut = "Processing history: \n"
+ else:
+ strOut = "No Job started."
+ processes = []
+
+ isThereRunning = False
+
+ if not isinstance(processes, list):
+ processes = [processes]
+
+ for p in processes:
+ d = datetime.datetime.fromtimestamp(float(p['startTime'])/1000.0)
+ strOut += "Process started: " + str(d) + " is in state: " + p['status'] + "\n"
+ if not isFinished(p['status']):
+ isThereRunning = True
+
+ column1 = "resultCode"
+ column2 = "resultString"
+
+ row = tableBuilder.addRow()
+ if not isThereRunning:
+ row.setCell(column1, 100 )
+ row.setCell(column2, strOut )
+ else:
+ row.setCell(column1, 101 )
+ row.setCell(column2, strOut )
+
+def isFinished(status):
+ return status == 'COMPLETE' or status == 'ABORTED' or status == 'ERROR' or status == 'WARNING'
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggergc3pie/plugin.properties b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggergc3pie/plugin.properties
new file mode 100644
index 00000000000..0755ced0278
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggergc3pie/plugin.properties
@@ -0,0 +1,3 @@
+label = Trigger gc3pie job
+class = ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.JythonIngestionService
+script-path = script.py
diff --git a/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggergc3pie/script.py b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggergc3pie/script.py
new file mode 100644
index 00000000000..92d9e9d84cc
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/core-plugins/illumina-qgf/1/dss/reporting-plugins/triggergc3pie/script.py
@@ -0,0 +1,201 @@
+from __future__ import with_statement
+import subprocess
+import os
+import time
+import shutil
+import sys
+from ch.systemsx.cisd.openbis.generic.shared.api.v1.dto import SearchCriteria
+
+ORGANISM_CODE = 'NCBI_ORGANISM_TAXONOMY'
+
+# here we have a lookup table to look for the the bowtie2 index names given
+# by the NCBI/openBIS taxonomy
+
+ORGANISM_DICT = {"10090" : "mm10", # Mouse
+ "9606" : "hg19", # Human
+ "7227" : "dm3", # Fruit fly
+ "10847" : "phix", # phiX
+ "4932" : "sacCer3", # baker's yeast
+}
+
+SESSIONDIR="/home/sbsuser/openbis/sprint/servers/datastore_server/dss-tmp/"
+
+column1 = "resultCode"
+column2 = "resultString"
+
+# --------------------------------------------------------------------
+
+def fileExists (fileName):
+
+ #if os.path.isfile(fileName):
+ # return True
+ #else:
+ # return False
+
+ try:
+ with open(fileName):
+ print fileName
+ print "exists!"
+ return True
+ except IOError:
+ print "no file"
+ return False
+
+# --------------------------------------------------------------------
+
+def getSessionPath(permId, userId):
+ return SESSIONDIR + permId + "_" + userId
+
+# --------------------------------------------------------------------
+
+def process(tr, parameters, tableBuilder):
+ '''
+ Main function which controls the output
+ '''
+ method = parameters.get("method")
+ permId = parameters.get("permId")
+ userId = parameters.get("userId")
+
+ tableBuilder.addHeader(column1)
+ tableBuilder.addHeader(column2)
+
+ if (method == "startJob" and not os.path.exists(getSessionPath(permId, userId))):
+ print "Start the job"
+ startJob(tr, parameters, userId, tableBuilder)
+
+ if method == "pollJob":
+ pollJob(tr, parameters, userId, tableBuilder)
+
+# --------------------------------------------------------------------
+
+def startJob(tr, parameters, userId, tableBuilder):
+ '''
+ Starts job
+ '''
+ permId = parameters.get("permId")
+ sendEmail = parameters.get("sendEmail")
+ bowtieParam = parameters.get("bowtieParam")
+ clusteroption = parameters.get("clusteroptionsParam")
+
+ #print(permId)
+ #print(sendEmail)
+ #print(bowtieParam)
+ #print(clusteroption)
+
+ outputDict = {}
+ result = ""
+
+ CMD = "/home/sbsuser/openbis/bin/gc3_bowtie2.sh"
+
+ def searchDs (tr, dscode):
+ # search for the data set
+ search_service = tr.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch( \
+ SearchCriteria.MatchClauseAttribute.CODE, dscode));
+ myds = search_service.searchForDataSets(sc)
+ try:
+ assert myds.size() == 1
+ except assertionerror:
+ print (str(myds.size()) + " " + myds.getcode())
+ return myds
+
+ # --------------------------------------------------------------------
+
+ def searchSample (tr, sampleCode):
+ search_service = tr.getSearchService()
+ sc = SearchCriteria()
+ sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch( \
+ SearchCriteria.MatchClauseAttribute.CODE, sampleCode));
+ searchedSamples = search_service.searchForSamples(sc)
+ try:
+ assert searchedSamples.size() == 1
+ except assertionerror:
+ print (str(searchedSamples.size()) + " " + searchedSamples.getcode())
+ return searchedSamples
+
+ # --------------------------------------------------------------------
+
+ dataSet = searchDs(tr, permId)
+ connectedSampleId = dataSet[0].getSample().getSampleIdentifier()
+
+ # We have to do a second search for the sample, otherwise the peroperties
+ # are not present when using dataSet[0].getSample() fro accessing the sample
+
+ content = contentProvider.getContent(permId)
+ #print content
+ pList = content.listMatchingNodes(".*.fastq.gz")
+ #print pList
+
+ def returnDict(outputDict):
+ for entry in outputDict:
+ row = tableBuilder.addRow()
+ row.setCell(column1, outputDict[entry][0])
+ row.setCell(column2, outputDict[entry][1])
+
+
+ if pList:
+ sampleCode = "-".join(str(pList[0].tryGetFile()).split("/")[-1].split("_")[0:3])
+
+ print sampleCode
+ foundSample = searchSample(tr, sampleCode)
+ organism = foundSample[0].getPropertyValue(ORGANISM_CODE)
+ print organism
+
+ if organism:
+ try:
+ outputDict[0] = [0, "Found " + ORGANISM_DICT[organism] + "[" +organism + \
+ "] as reference genome - defined in Sample " + \
+ sampleCode ]
+
+ for element in pList:
+ print element.tryGetFile()
+ file = str(element.tryGetFile())
+
+ # here we actually start the job
+ proc = subprocess.Popen([CMD, file, permId + "_" + userId, ORGANISM_DICT[organism], "\'" + bowtieParam + "\'", clusteroption, "8" , getSessionPath(permId, userId)], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+ strOut, err = proc.communicate()
+ print strOut
+ print err
+
+ filename = os.path.basename(file)
+ if len(err) == 0:
+ outputDict[5] = [0, strOut]
+ outputDict[1] = [0, "Processing " + filename]
+ outputDict[3] = [0, "Successfully submitted job to... "]
+ else:
+ outputDict[5] = [1, err]
+
+ except:
+ outputDict[0] = [1, "Given organism " + organism + " from sample " + sampleCode + " is not available as bowtie2 index."]
+ else:
+ outputDict[0] = [1, "No organism specified in the sample. Making an alignment is not possible."]
+
+ #sampleId, fcDate, seqSn, runningNumber, fcID, lane, index, fullLane, readNumber, fileNumber = filename.split('-')[-1].split('_')
+
+ returnDict(outputDict)
+
+# --------------------------------------------------------------------
+
+def pollJob(tr, parameters, userId, tableBuilder):
+
+ permId = parameters.get("permId")
+
+ output = subprocess.Popen(["/home/sbsuser/bela_play/gc3Status.sh", getSessionPath(permId, userId)], stdout=subprocess.PIPE, stderr=subprocess.PIPE)
+ strOut, err = output.communicate()
+ strOut = strOut.strip()
+
+ column1 = "resultCode"
+ column2 = "resultString"
+
+ row = tableBuilder.addRow()
+ if strOut == 'TERMINATED' or strOut == 'STOPPED' or strOut == 'Nope':
+ row.setCell(column1, 100 )
+ row.setCell(column2, strOut )
+ else:
+ row.setCell(column1, 101 )
+ row.setCell(column2, strOut )
+
+ if strOut == 'TERMINATED' or strOut == 'STOPPED':
+ shutil.rmtree(getSessionPath(permId, userId))
+
diff --git a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/DSUDropboxSystemTest.java b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/DSUDropboxSystemTest.java
index 7556a28d8d1..c98f40346ed 100644
--- a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/DSUDropboxSystemTest.java
+++ b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/DSUDropboxSystemTest.java
@@ -33,5 +33,11 @@ public abstract class DSUDropboxSystemTest extends GenericDropboxSystemTest
DSUTestInitializer.init();
super.beforeSuite();
}
+
+ @Override
+ protected String getDropboxIncomingDirectoryName()
+ {
+ return getDropboxName();
+ }
}
diff --git a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFCreateFlowcellNextseq.java b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFCreateFlowcellNextseq.java
new file mode 100644
index 00000000000..bd01ebca3f9
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFCreateFlowcellNextseq.java
@@ -0,0 +1,43 @@
+package ch.ethz.bsse.cisd.dsu.dss.systemtests;
+
+import java.util.List;
+
+import org.testng.Assert;
+import org.testng.annotations.Test;
+
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample;
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria;
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause;
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute;
+import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE;
+
+public class QGFCreateFlowcellNextseq extends DSUDropboxSystemTest
+{
+
+ @Override
+ protected String getDropboxName()
+ {
+ return "create-flowcell-nextseq";
+ }
+
+ @Test
+ public void testDropbox() throws Exception
+ {
+ importDataWithMarker("141212_NS500318_0033_AH16YMBGXX");
+ waitUntilDataImported();
+ waitUntilDataReindexed(SamplePE.class);
+
+ String sessionToken = getGeneralInformationService().tryToAuthenticateForAllServices("kohleman", "password");
+
+ SearchCriteria criteria = new SearchCriteria();
+ criteria.addMatchClause(MatchClause.createAttributeMatch(MatchClauseAttribute.CODE, "H16YMBGXX"));
+
+ List<Sample> samples = getGeneralInformationService().searchForSamples(sessionToken, criteria);
+ Assert.assertEquals(samples.size(), 1);
+ Sample flowCell = samples.get(0);
+ Assert.assertEquals(flowCell.getProperties().get("ILLUMINA_PIPELINE_VERSION"), "2.1.3");
+
+ }
+
+
+}
diff --git a/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFReadRtaTimestamp.java b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFReadRtaTimestamp.java
new file mode 100644
index 00000000000..b5eac887b09
--- /dev/null
+++ b/deep_sequencing_unit/sourceTest/java/ch/ethz/bsse/cisd/dsu/dss/systemtests/QGFReadRtaTimestamp.java
@@ -0,0 +1,41 @@
+package ch.ethz.bsse.cisd.dsu.dss.systemtests;
+
+import java.util.List;
+
+import org.testng.Assert;
+import org.testng.annotations.Test;
+
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.Sample;
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria;
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause;
+import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClauseAttribute;
+import ch.systemsx.cisd.openbis.generic.shared.dto.SamplePE;
+
+public class QGFReadRtaTimestamp extends DSUDropboxSystemTest
+{
+
+ @Override
+ protected String getDropboxName()
+ {
+ return "read-rta-timestamp";
+ }
+
+ @Test
+ public void testDropbox() throws Exception
+ {
+ importDataWithMarker("141204_D00535_0035_BC5LPVANXX");
+ waitUntilDataImported();
+ waitUntilDataReindexed(SamplePE.class);
+
+ String sessionToken = getGeneralInformationService().tryToAuthenticateForAllServices("kohleman", "password");
+
+ SearchCriteria criteria = new SearchCriteria();
+ criteria.addMatchClause(MatchClause.createAttributeMatch(MatchClauseAttribute.CODE, "141204_D00535_0035_BC5LPVANXX"));
+
+ List<Sample> samples = getGeneralInformationService().searchForSamples(sessionToken, criteria);
+ Assert.assertEquals(samples.size(), 1);
+ Sample flowCell = samples.get(0);
+ Assert.assertEquals(flowCell.getProperties().get("FLOW_CELL_SEQUENCED_ON"), "2014-12-04 15:31:37 +0100");
+ }
+
+}
--
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