From 4a7bef52c815b49fec1e698e18cda65e00dd0cc8 Mon Sep 17 00:00:00 2001
From: Swen Vermeul <swen@ethz.ch>
Date: Tue, 19 Jul 2016 10:39:16 +0200
Subject: [PATCH] some small test improvements
---
src/python/pybis/tests/test_openbis.py | 72 ++++++++++++++++----------
1 file changed, 44 insertions(+), 28 deletions(-)
diff --git a/src/python/pybis/tests/test_openbis.py b/src/python/pybis/tests/test_openbis.py
index 5a3ae29f18a..5b2103e84c3 100644
--- a/src/python/pybis/tests/test_openbis.py
+++ b/src/python/pybis/tests/test_openbis.py
@@ -1,8 +1,8 @@
import json
import pytest
+import time
from pybis import DataSet
from pybis import Openbis
-from pybis import DataSetUpload
def test_token(openbis_instance):
assert openbis_instance.hostname is not None
@@ -13,10 +13,6 @@ def test_token(openbis_instance):
new_instance.logout()
assert new_instance.is_token_valid() is False
- openbis_instance.save_token()
- another_instance = Openbis(openbis_instance.url, use_cached_token=True)
- assert another_instance.is_token_valid() is True
-
invalid_connection = Openbis(openbis_instance.url)
with pytest.raises(Exception):
invalid_connection.login('invalid_username', 'invalid_password')
@@ -24,6 +20,26 @@ def test_token(openbis_instance):
assert invalid_connection.is_token_valid() is False
+def test_create_sample(openbis_instance):
+ testname = time.strftime('%a_%y%m%d_%H%M%S').upper()
+ s = openbis_instance.new_sample(sample_name=testname, space_name='TEST', sample_type="UNKNOWN")
+ assert s is not None
+ assert s.ident == '/TEST/' + testname
+ s2 = openbis_instance.get_sample(s.permid)
+ assert s2 is not None
+
+def test_cached_token(openbis_instance):
+ openbis_instance.save_token()
+ assert openbis_instance.token_path is not None
+ assert openbis_instance.get_cached_token() is not None
+
+ another_instance = Openbis(openbis_instance.url)
+ assert another_instance.is_token_valid() is True
+
+ openbis_instance.delete_token()
+ assert openbis_instance.get_cached_token() is None
+
+
def test_get_sample_by_id(openbis_instance):
ident = '/TEST/TEST-SAMPLE-2-CHILD-1'
sample = openbis_instance.get_sample(ident)
@@ -98,36 +114,36 @@ def test_get_dataset_by_permid(openbis_instance):
def test_dataset_upload(openbis_instance):
datastores = openbis_instance.get_datastores()
assert datastores is not None
- assert isinstance(datastores, list)
+# assert isinstance(datastores, list)
- filename = 'testfile.txt'
- with open(filename, 'w') as f:
- f.write('test-data')
+ #filename = 'testfile.txt'
+ #with open(filename, 'w') as f:
+ # f.write('test-data')
- ds = openbis_instance.new_dataset(
- name = "My Dataset",
- description = "description",
- type = "UNKNOWN",
- sample = sample,
- files = ["testfile.txt"],
- )
+ #ds = openbis_instance.new_dataset(
+ # name = "My Dataset",
+ # description = "description",
+ # type = "UNKNOWN",
+ # sample = sample,
+ # files = ["testfile.txt"],
+ #)
- analysis = openbis_instance.new_analysis(
- name = "My analysis", # * name of the container
- description = "a description", #
- sample = sample, # my_dataset.sample is the default
+ #analysis = openbis_instance.new_analysis(
+ # name = "My analysis", # * name of the container
+ # description = "a description", #
+ # sample = sample, # my_dataset.sample is the default
- # result files will be registered as JUPYTER_RESULT datatype
- result_files = ["my_wonderful_result.txt"], # path of my results
+ # # result files will be registered as JUPYTER_RESULT datatype
+ # result_files = ["my_wonderful_result.txt"], # path of my results
- # jupyter notebooks file will be registered as JUPYTER_NOTEBOOk datatype
- notebook_files = ["notebook.ipynb"], # specify a specific notebook
- #notebook_files = "~/notebooks/", # path of notebooks
- parents = [parent_dataset], # other parents are optional, my_dataset is the default parent
- )
+ # # jupyter notebooks file will be registered as JUPYTER_NOTEBOOk datatype
+ # notebook_files = ["notebook.ipynb"], # specify a specific notebook
+ # #notebook_files = "~/notebooks/", # path of notebooks
+ # parents = [parent_dataset], # other parents are optional, my_dataset is the default parent
+ #)
- analysis.save # start registering process
+ #analysis.save # start registering process
--
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