diff --git a/screening/.classpath b/screening/.classpath index cc1665315a02ea156dbf6340f0b9f1b81e009531..d230e06bfaa3a7c4c3bf9c321f0650b5e2045704 100644 --- a/screening/.classpath +++ b/screening/.classpath @@ -44,5 +44,6 @@ <classpathentry kind="lib" path="/libraries/nativedata"/> <classpathentry kind="lib" path="/libraries/fastutil/fastutil.jar" sourcepath="/libraries/fastutil/fastutil-src.zip"/> <classpathentry kind="lib" path="/libraries/jline/jline.jar" sourcepath="/libraries/jline/src.zip"/> + <classpathentry kind="lib" path="/libraries/sybit-image-viewer/image-viewer.jar"/> <classpathentry kind="output" path="targets/www/WEB-INF/classes"/> </classpath> diff --git a/screening/build/build.xml b/screening/build/build.xml index 44dc1dbaaab16f468cc8acc24b2e3078b2e6991d..cc2d9eef7193b0b8f1847425b3731d609bcdca95 100644 --- a/screening/build/build.xml +++ b/screening/build/build.xml @@ -193,6 +193,10 @@ <param name="dir" value="${lib}/cisd-base" /> <param name="jar" value="cisd-base.jar" /> </antcall> + <antcall target="copy-and-sign-jar"> + <param name="dir" value="${lib}/sybit-image-viewer" /> + <param name="jar" value="image-viewer.jar" /> + </antcall> <antcall target="copy-and-sign-jar"> <param name="dir" value="${lib}/spring" /> <param name="jar" value="spring-web.jar" /> diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java index e71665ac99d0904784b0eaea4bc68c33865a8a0c..0751dba76e7a8b84b59abbe15ca6743393544c4d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/client/application/detailviewers/WellContentDialog.java @@ -442,6 +442,7 @@ public class WellContentDialog extends Dialog Window.open(urlParams.toString(), "_blank", "resizable=yes,scrollbars=yes,dependent=yes"); + hide(); } }); diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/public/screening-dictionary.js b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/public/screening-dictionary.js index 99dd9b5a08f585acf20d1d17f4a54401943b3412..d9f0dfe20ccd9c2a0ff25ea9a81817f3dda520ad 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/public/screening-dictionary.js +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/public/screening-dictionary.js @@ -79,7 +79,7 @@ var screening = { EXPERIMENT_PLATE_MATERIAL_BROWSER_SECTION: "Library Index", EXACT_MATCH_ONLY: "Exact Matches Only", - image_viewer_button: "Launch Image Viewer", + image_viewer_button: "Adjust Colors", // LAST LINE: KEEP IT AT THE END lastline: "" // we need a line without a comma diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java index 414aec50ec3ae27e913c66b28bc0413121853a39..1ab895837eb962d713b538fcd31ec2a19c0337fa 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/web/server/ImageViewerLaunchServlet.java @@ -30,11 +30,14 @@ import javax.servlet.http.HttpServletRequest; import javax.servlet.http.HttpServletResponse; import org.apache.commons.lang.StringUtils; +import org.apache.log4j.Logger; import org.springframework.stereotype.Controller; import org.springframework.web.bind.annotation.RequestMapping; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.exceptions.UserFailureException; +import ch.systemsx.cisd.common.logging.LogCategory; +import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.utilities.Template; import ch.systemsx.cisd.openbis.generic.client.web.server.AbstractServlet; import ch.systemsx.cisd.openbis.plugin.screening.client.web.client.ParameterNames; @@ -66,6 +69,7 @@ public class ImageViewerLaunchServlet extends AbstractServlet + " <j2se version='1.5+'/>\n" + " <jar href='screening.jar'/>\n" + " <jar href='cisd-base.jar'/>\n" + + " <jar href='image-viewer.jar'/>\n" + " <jar href='spring-web.jar'/>\n" + " <jar href='spring-context.jar'/>\n" + " <jar href='spring-beans.jar'/>\n" @@ -87,9 +91,11 @@ public class ImageViewerLaunchServlet extends AbstractServlet + "${data-set-and-wells-arguments}\n" + " </application-desc>\n" + "</jnlp>\n"); + private final Logger operationLog; public ImageViewerLaunchServlet() { + operationLog = LogFactory.getLogger(LogCategory.OPERATION, getClass()); } @Override @@ -107,8 +113,10 @@ public class ImageViewerLaunchServlet extends AbstractServlet template.bind("base-URL", createBaseURL(request)); template.bind("main-class", getMainClass()); template.bind("service-URL", basicURL); - template.bind("session-id", getSessionToken(request)); - template.bind("channel", getParam(request, ParameterNames.CHANNEL)); + String sessionToken = getSessionToken(request); + template.bind("session-id", sessionToken); + String channel = getParam(request, ParameterNames.CHANNEL); + template.bind("channel", channel); StringBuilder builder = new StringBuilder(); for (String dataSetAndWells : getParams(request, ParameterNames.DATA_SET_AND_WELLS)) { @@ -117,6 +125,11 @@ public class ImageViewerLaunchServlet extends AbstractServlet template.bind("data-set-and-wells-arguments", builder.toString()); writer.print(template.createText()); writer.close(); + if (operationLog.isInfoEnabled()) + { + operationLog.info("Start Image Viewer for session " + sessionToken + + " and channel " + channel); + } } catch (UserFailureException ex) { printError(response, ex.getMessage()); @@ -125,7 +138,7 @@ public class ImageViewerLaunchServlet extends AbstractServlet private String getMainClass() { - return "ch.systemsx.cisd.openbis.plugin.screening.client.api.v1.ImageViewer"; + return "ch.systemsx.sybit.imageviewer.gui.ImageViewer"; } private String createBaseURL(HttpServletRequest request)