diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/docxbuilder-source/DOCXBuilder.java b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/docxbuilder-source/DOCXBuilder.java
new file mode 100644
index 0000000000000000000000000000000000000000..58c4eae43c6670059c0aca47740a1d722cfccf5d
--- /dev/null
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/docxbuilder-source/DOCXBuilder.java
@@ -0,0 +1,103 @@
+package ch.ethz.sis;
+
+import java.io.ByteArrayOutputStream;
+import java.io.File;
+import java.io.FileOutputStream;
+
+import org.docx4j.jaxb.Context;
+import org.docx4j.openpackaging.contenttype.ContentType;
+import org.docx4j.openpackaging.packages.WordprocessingMLPackage;
+import org.docx4j.openpackaging.parts.PartName;
+import org.docx4j.openpackaging.parts.WordprocessingML.AlternativeFormatInputPart;
+import org.docx4j.relationships.Relationship;
+import org.docx4j.wml.CTAltChunk;
+
+public class DOCXBuilder
+{
+ public static void main(String[] args) throws Exception
+ {
+ DOCXBuilder docx = new DOCXBuilder();
+ docx.addTitle("TitleA");
+ docx.addHeader("MetaA");
+ docx.addProperty("PropertyA", "ValueA");
+ docx.addProperty("PropertyB", "ValueB");
+ docx.addProperty("PropertyC",
+ "<p>I am normal</p><p style=\"color:red;\">I am red</p><p style=\"color:blue;\">I am blue</p><p style=\"font-size:36px;\">I am big</p>");
+
+ FileOutputStream out = new FileOutputStream(new File("wordFromHTML.docx"));
+ out.write(docx.getDocBytes());
+ out.close();
+ }
+
+ private StringBuffer doc;
+
+ public DOCXBuilder()
+ {
+ doc = new StringBuffer();
+ startDoc();
+ }
+
+ private void startDoc()
+ {
+ doc.append("<!DOCTYPE html PUBLIC \"-//W3C//DTD XHTML 1.0 Strict//EN\" \"http://www.w3.org/TR/xhtml1/DTD/xhtml1-strict.dtd\">");
+ doc.append("<html xmlns=\"http://www.w3.org/1999/xhtml\">");
+ doc.append("<head></head>");
+ doc.append("<body>");
+ }
+
+ private void endDoc()
+ {
+ doc.append("</body>");
+ doc.append("</html>");
+ }
+
+ public void addProperty(String key, String value)
+ {
+ doc.append("<p>").append("<b>").append(key).append(": ").append("</b>").append(value).append("</p>");
+ }
+
+ public void addParagraph(String value)
+ {
+ doc.append("<p>").append(value).append("</p>");
+ }
+
+ public void addTitle(String title)
+ {
+ doc.append("<h1>").append(title).append("</h1>");
+ }
+
+ public void addHeader(String header)
+ {
+ doc.append("<h2>").append(header).append("</h2>");
+ }
+
+ public byte[] getHTMLBytes() throws Exception
+ {
+ endDoc();
+ return doc.toString().getBytes();
+ }
+
+ public byte[] getDocBytes() throws Exception
+ {
+ // .. Finish Document
+ endDoc();
+ // .. HTML Code
+ WordprocessingMLPackage wordMLPackage = WordprocessingMLPackage.createPackage();
+ AlternativeFormatInputPart afiPart = new AlternativeFormatInputPart(new PartName("/hw.html"));
+ afiPart.setBinaryData(doc.toString().getBytes());
+ afiPart.setContentType(new ContentType("text/html"));
+ Relationship altChunkRel = wordMLPackage.getMainDocumentPart().addTargetPart(afiPart);
+
+ // .. the bit in document body
+ CTAltChunk ac = Context.getWmlObjectFactory().createCTAltChunk();
+ ac.setId(altChunkRel.getId());
+ wordMLPackage.getMainDocumentPart().addObject(ac);
+
+ // .. content type
+ wordMLPackage.getContentTypeManager().addDefaultContentType("html", "text/html");
+ ByteArrayOutputStream outStream = new ByteArrayOutputStream();
+ wordMLPackage.save(outStream);
+
+ return outStream.toByteArray();
+ }
+}
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/exports-api.py b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/exports-api.py
index 1318f246ed277eef3c548de185027f3c53bfdba3..8b41073671a3194d2b68989cdd4dbb7e4454f948 100644
--- a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/exports-api.py
+++ b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/exports-api.py
@@ -100,6 +100,9 @@ from ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment import Experiment
from ch.ethz.sis.openbis.generic.asapi.v3.dto.sample import Sample
from ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset import DataSet
+#DOCX
+from ch.ethz.sis import DOCXBuilder
+
class MLStripper(HTMLParser):
def __init__(self):
self.reset()
@@ -367,13 +370,16 @@ def export(sessionToken, entities, includeRoot, userEmail, mailClient):
if entityObj is not None:
objectCache[permId] = entityObj;
- if entityObj is not None and entityFilePath is not None:
- #JSON
- entityJson = String(objectMapper.writeValueAsString(entityObj));
- addFile(tempDirPath, entityFilePath, "json", entityJson.getBytes(), zos);
- #TEXT
- entityTXT = String(getTXT(entityObj, v3, sessionToken));
- addFile(tempDirPath, entityFilePath, "txt", entityTXT.getBytes(), zos);
+ if entityObj is not None and entityFilePath is not None:
+ #JSON
+ entityJson = String(objectMapper.writeValueAsString(entityObj));
+ addFile(tempDirPath, entityFilePath, "json", entityJson.getBytes(), zos);
+ #TEXT
+ entityTXT = String(getTXT(entityObj, v3, sessionToken, False));
+ addFile(tempDirPath, entityFilePath, "txt", entityTXT.getBytes(), zos);
+ #DOCX
+ entityDOCX = getDOCX(entityObj, v3, sessionToken);
+ addFile(tempDirPath, entityFilePath, "html", entityDOCX, zos);
zos.close();
@@ -390,17 +396,88 @@ def export(sessionToken, entities, includeRoot, userEmail, mailClient):
FileUtils.forceDelete(File(tempDirPath));
FileUtils.forceDelete(File(tempZipFilePath));
return True
-
-def getTXT(entityObj, v3, sessionToken):
+
+def getDOCX(entityObj, v3, sessionToken):
+ docxBuilder = DOCXBuilder();
+ docxBuilder.addTitle(entityObj.getCode());
+ docxBuilder.addHeader("Identification Info");
+
+ typeObj = None
+ if isinstance(entityObj, Project):
+ docxBuilder.addProperty("Kind", "Project");
+ if isinstance(entityObj, Experiment):
+ docxBuilder.addProperty("Kind", "Experiment");
+ searchCriteria = ExperimentTypeSearchCriteria();
+ searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
+ fetchOptions = ExperimentTypeFetchOptions();
+ fetchOptions.withPropertyAssignments().withPropertyType();
+ results = v3.searchExperimentTypes(sessionToken, searchCriteria, fetchOptions);
+ typeObj = results.getObjects().get(0);
+ if isinstance(entityObj, Sample):
+ docxBuilder.addProperty("Kind", "Sample");
+ searchCriteria = SampleTypeSearchCriteria();
+ searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
+ fetchOptions = SampleTypeFetchOptions();
+ fetchOptions.withPropertyAssignments().withPropertyType();
+ results = v3.searchSampleTypes(sessionToken, searchCriteria, fetchOptions);
+ typeObj = results.getObjects().get(0);
+ if isinstance(entityObj, DataSet):
+ docxBuilder.addProperty("Kind", "DataSet");
+ searchCriteria = DataSetTypeSearchCriteria();
+ searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
+ fetchOptions = DataSetTypeFetchOptions();
+ fetchOptions.withPropertyAssignments().withPropertyType();
+ results = v3.searchDataSetTypes(sessionToken, searchCriteria, fetchOptions);
+ typeObj = results.getObjects().get(0);
+
+ if not isinstance(entityObj, Project):
+ docxBuilder.addProperty("Type", entityObj.getType().getCode());
+
+ if(entityObj.getRegistrator() is not None):
+ docxBuilder.addProperty("Registrator", entityObj.getRegistrator().getUserId());
+ docxBuilder.addProperty("Registration Date", str(entityObj.getRegistrationDate()));
+
+ if entityObj.getModifier() is not None:
+ docxBuilder.addProperty("Modifier", entityObj.getModifier().getUserId());
+ docxBuilder.addProperty("Modification Date", str(entityObj.getModificationDate()));
+
+
+ if isinstance(entityObj, Project):
+ docxBuilder.addHeader("Description");
+ docxBuilder.addParagraph(entityObj.getDescription());
+
+ if isinstance(entityObj, Sample) or isinstance(entityObj, DataSet):
+ docxBuilder.addHeader("Parents");
+ parents = entityObj.getParents();
+ for parent in parents:
+ docxBuilder.addParagraph(parent.getCode());
+ docxBuilder.addHeader("Children");
+ children = entityObj.getChildren();
+ for child in children:
+ docxBuilder.addParagraph(child.getCode());
+
+ if not isinstance(entityObj, Project):
+ docxBuilder.addHeader("Properties");
+ propertyAssigments = typeObj.getPropertyAssignments();
+ properties = entityObj.getProperties();
+ for propertyAssigment in propertyAssigments:
+ propertyType = propertyAssigment.getPropertyType();
+ if propertyType.getCode() in properties:
+ propertyValue = properties[propertyType.getCode()];
+ docxBuilder.addProperty(propertyType.getLabel(), propertyValue);
+
+ return docxBuilder.getHTMLBytes();
+
+def getTXT(entityObj, v3, sessionToken, isRichText):
txtBuilder = StringBuilder();
txtBuilder.append(entityObj.getCode()).append("\n");
txtBuilder.append("# Identification Info:").append("\n");
typeObj = None
if isinstance(entityObj, Project):
- txtBuilder.append("Kind: Project").append("\n");
+ txtBuilder.append("- Kind: Project").append("\n");
if isinstance(entityObj, Experiment):
- txtBuilder.append("Kind: Experiment").append("\n");
+ txtBuilder.append("- Kind: Experiment").append("\n");
searchCriteria = ExperimentTypeSearchCriteria();
searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
fetchOptions = ExperimentTypeFetchOptions();
@@ -408,7 +485,7 @@ def getTXT(entityObj, v3, sessionToken):
results = v3.searchExperimentTypes(sessionToken, searchCriteria, fetchOptions);
typeObj = results.getObjects().get(0);
if isinstance(entityObj, Sample):
- txtBuilder.append("Kind: Sample").append("\n");
+ txtBuilder.append("- Kind: Sample").append("\n");
searchCriteria = SampleTypeSearchCriteria();
searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
fetchOptions = SampleTypeFetchOptions();
@@ -416,7 +493,7 @@ def getTXT(entityObj, v3, sessionToken):
results = v3.searchSampleTypes(sessionToken, searchCriteria, fetchOptions);
typeObj = results.getObjects().get(0);
if isinstance(entityObj, DataSet):
- txtBuilder.append("Kind: DataSet").append("\n");
+ txtBuilder.append("- Kind: DataSet").append("\n");
searchCriteria = DataSetTypeSearchCriteria();
searchCriteria.withCode().thatEquals(entityObj.getType().getCode());
fetchOptions = DataSetTypeFetchOptions();
@@ -425,15 +502,15 @@ def getTXT(entityObj, v3, sessionToken):
typeObj = results.getObjects().get(0);
if not isinstance(entityObj, Project):
- txtBuilder.append("Type: " + entityObj.getType().getCode()).append("\n");
+ txtBuilder.append("- Type: " + entityObj.getType().getCode()).append("\n");
if(entityObj.getRegistrator() is not None):
- txtBuilder.append("Registrator: ").append(entityObj.getRegistrator().getUserId()).append("\n");
- txtBuilder.append("Registration Date: ").append(str(entityObj.getRegistrationDate())).append("\n");
+ txtBuilder.append("- Registrator: ").append(entityObj.getRegistrator().getUserId()).append("\n");
+ txtBuilder.append("- Registration Date: ").append(str(entityObj.getRegistrationDate())).append("\n");
if entityObj.getModifier() is not None:
- txtBuilder.append("Modifier: ").append(entityObj.getModifier().getUserId()).append("\n");
- txtBuilder.append("Modification Date: ").append(str(entityObj.getModificationDate())).append("\n");
+ txtBuilder.append("- Modifier: ").append(entityObj.getModifier().getUserId()).append("\n");
+ txtBuilder.append("- Modification Date: ").append(str(entityObj.getModificationDate())).append("\n");
if isinstance(entityObj, Project):
@@ -444,11 +521,11 @@ def getTXT(entityObj, v3, sessionToken):
txtBuilder.append("# Parents:").append("\n");
parents = entityObj.getParents();
for parent in parents:
- txtBuilder.append(parent.getCode()).append("\n");
+ txtBuilder.append("- ").append(parent.getCode()).append("\n");
txtBuilder.append("# Children:").append("\n");
children = entityObj.getChildren();
for child in children:
- txtBuilder.append(child.getCode()).append("\n");
+ txtBuilder.append("- ").append(child.getCode()).append("\n");
if not isinstance(entityObj, Project):
txtBuilder.append("# Properties:").append("\n");
@@ -458,9 +535,9 @@ def getTXT(entityObj, v3, sessionToken):
propertyType = propertyAssigment.getPropertyType();
if propertyType.getCode() in properties:
propertyValue = properties[propertyType.getCode()];
- if(propertyType.getDataType() == DataType.MULTILINE_VARCHAR):
- propertyValue = strip_tags(propertyValue);
- txtBuilder.append(propertyType.getLabel()).append(": ").append(propertyValue).append("\n");
+ if(propertyType.getDataType() == DataType.MULTILINE_VARCHAR and isRichText is False):
+ propertyValue = strip_tags(propertyValue).strip();
+ txtBuilder.append("- ").append(propertyType.getLabel()).append(": ").append(propertyValue).append("\n");
return txtBuilder.toString();
diff --git a/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/lib/antlr-2.7.7.jar b/openbis_standard_technologies/dist/core-plugins/eln-lims/1/dss/reporting-plugins/exports-api/lib/antlr-2.7.7.jar
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