From 3d8e40a0c8b8854af168ff891686074b7b9ece89 Mon Sep 17 00:00:00 2001
From: barillac <barillac>
Date: Mon, 29 Jun 2015 14:31:28 +0000
Subject: [PATCH] adapted to Weis lab def
SVN: 34303
---
.../weismigration/1/as/definitions.py | 27 +++++++++----------
1 file changed, 12 insertions(+), 15 deletions(-)
diff --git a/plasmid/source/core-plugins/weismigration/1/as/definitions.py b/plasmid/source/core-plugins/weismigration/1/as/definitions.py
index 6199dec0fa3..f7617f1b663 100644
--- a/plasmid/source/core-plugins/weismigration/1/as/definitions.py
+++ b/plasmid/source/core-plugins/weismigration/1/as/definitions.py
@@ -24,22 +24,19 @@ annotationsScriptName="ANNOTATIONS"
#
# Storage
#
-numberOfStorageGroups = 1
+numberOfRepetitions = 5
-def getStorageGroupPropertyCodes():
+def getRepetitionPropertyCodes():
propertyCodes = [];
- for property in getStorageGroupDefinition():
+ for property in getRepetitionDefinition():
propertyCodes.append(property[0]);
return propertyCodes;
-def getStorageGroupDefinition():
+def getRepetitionDefinition():
return [
- ["STORAGE_NAME", "Physical Storage", "location", DataType.CONTROLLEDVOCABULARY, "FREEZER", "Storage Name", None, None, False],
- ["STORAGE_ROW", "Physical Storage", "Storage Row", DataType.INTEGER, None, "Storage Row", None, None, False],
- ["STORAGE_COLUMN", "Physical Storage", "Storage Column", DataType.INTEGER, None, "Storage Column", None, None, False],
- ["STORAGE_BOX_NAME", "Physical Storage", "box label", DataType.VARCHAR, None, "Storage Box Name", None, None, False],
- ["STORAGE_USER", "Physical Storage", "frozen by", DataType.CONTROLLEDVOCABULARY, "LAB_MEMBERS", "Storage User Id", None, None, False],
- ["STORAGE_BOX_POSITION", "Physical Storage", "position", DataType.CONTROLLEDVOCABULARY, None, "Storage Box Position", None, None, False]
+ ["DISRUPTIONS", "Genotype", "disruptions", DataType.VARCHAR, None, "", None, None, False],
+ ["MARKERS", "Genotypee", "markers", DataType.VARCHAR, None, "", None, None, False],
+ ["UNMARKED_MUTATIONS", "Genotype", "unmarked mutations", DataType.VARCHAR, None, "", None, None, False],
];
#
@@ -89,15 +86,13 @@ strainDefinition = [
["BASE_STRAIN", "General", "base strain", DataType.VARCHAR, None, "", None, None, False],
["COMMENTS", "General", "comments", DataType.VARCHAR, None, "", None, None, False],
["DATE_ENTERED", "General", "date entered", DataType.TIMESTAMP, None, "", None, None, False],
- ["DISRUPTIONS", "General", "disruptions", DataType.VARCHAR, None, "", None, None, False],
- ["FROZEN_STOCK", "General", "frozen stock", DataType.BOOLEAN, None, "", None, None, False],
+ ["DERIVED_FROM", "General", "derived from", DataType.VARCHAR, None, "", None, None, False],
+ ["FROZEN_STOCK", "General", "frozen stock", DataType.VARCHAR, None, "", None, None, False],
["GENOTYPE_CONFIRMATION", "General", "genotype confirmation", DataType.VARCHAR, None, "", None, None, False],
["GLYCEROL_STOCK_NUMBER", "General", "glycerol stock number", DataType.INTEGER, None, "", None, None, False],
- ["NAME", "General", "KWY number", DataType.VARCHAR, None, "", None, None, False],
- ["MARKERS", "General", "markers", DataType.VARCHAR, None, "", None, None, False],
+ ["NAME", "General", "KWY number", DataType.VARCHAR, None, "", None, None, False],
["MAT", "General", "MAT", DataType.VARCHAR, None, "", None, None, False],
["REMOVED", "General", "removed", DataType.VARCHAR, None, "", None, None, False],
- ["UNMARKED_MUTATIONS", "General", "unmarked mutations", DataType.VARCHAR, None, "", None, None, False],
["WHO_ENTERED", "General", "who entered", DataType.VARCHAR, None, "", None, None, False],
["ANNOTATIONS_STATE", "Comments", "Annotations State", DataType.XML, None, "Annotations State", annotationsScriptName, None, False]
];
@@ -148,6 +143,8 @@ plasmidDefinition = [
["5INSERT_MOD", "General", "5' insert modif.", DataType.VARCHAR, None, "", None, None, False],
["5MOD", "General", "5' Modif.", DataType.VARCHAR, None, "", None, None, False],
["BACTERIAL_STRAIN", "General", "Bacterial strain", DataType.VARCHAR, None, "", None, None, False],
+ ["BY", "General", "By", DataType.VARCHAR, None, "", None, None, False],
+ ["COMMENT", "General", "Comment", DataType.VARCHAR, None, "", None, None, False],
["CONCENTRATION", "General", "Concentration", DataType.REAL, None, "", None, None, False],
["DNA_PREPARED_ON", "General", "DNA prepared on", DataType.VARCHAR, None, "", None, None, False],
["DRUG_RES", "General", "Drug res.", DataType.VARCHAR, None, "", None, None, False],
--
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