diff --git a/deep_sequencing_unit/resource/DSU TrackingClient.launch b/deep_sequencing_unit/resource/DSU TrackingClient.launch index 2b5cc3f75d02b078f2e980e5ab5f2d6cb0a42063..1d84c5bcece946e60d2e97ec59b8227b96e583b8 100644 --- a/deep_sequencing_unit/resource/DSU TrackingClient.launch +++ b/deep_sequencing_unit/resource/DSU TrackingClient.launch @@ -8,4 +8,5 @@ </listAttribute> <stringAttribute key="org.eclipse.jdt.launching.MAIN_TYPE" value="ch.ethz.bsse.cisd.dsu.tracking.main.TrackingClient"/> <stringAttribute key="org.eclipse.jdt.launching.PROJECT_ATTR" value="deep_sequencing_unit"/> +<stringAttribute key="org.eclipse.jdt.launching.WORKING_DIRECTORY" value="${workspace_loc:deep_sequencing_unit/tracking}"/> </launchConfiguration> diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java index 95ed67a83fbd01e43837cde770d90760c995fbaa..3974e582abdfe208191cf1400b8d9992ba3ea41e 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/main/TrackingClient.java @@ -40,11 +40,11 @@ import ch.systemsx.cisd.openbis.generic.shared.dto.SessionContextDTO; */ public class TrackingClient { - private static final String SERVICE_PROPERTIES_FILE = "etc/tracking-service.properties"; + private static final String SERVICE_PROPERTIES_FILE = "etc/service.properties"; private static final String LOCAL_STORAGE_FILE = "etc/tracking-local-database"; - private static final String EMAIL_TEMPLATE_FILE = "etc/tracking-email.template"; + private static final String EMAIL_TEMPLATE_FILE = "etc/email-template.txt"; private static final String OPENBIS_RMI_TRACKING = "/rmi-tracking"; diff --git a/deep_sequencing_unit/dist/tracking/etc/tracking-email.template b/deep_sequencing_unit/tracking/dist/etc/email-template.txt similarity index 100% rename from deep_sequencing_unit/dist/tracking/etc/tracking-email.template rename to deep_sequencing_unit/tracking/dist/etc/email-template.txt diff --git a/deep_sequencing_unit/tracking/dist/etc/log.xml b/deep_sequencing_unit/tracking/dist/etc/log.xml new file mode 100644 index 0000000000000000000000000000000000000000..31783966345eca176f0fe4bcfca2a1a3ff717be9 --- /dev/null +++ b/deep_sequencing_unit/tracking/dist/etc/log.xml @@ -0,0 +1,55 @@ +<?xml version="1.0" encoding="UTF-8" ?> +<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd"> + +<log4j:configuration xmlns:log4j='http://jakarta.apache.org/log4j/'> + + <appender name="DEFAULT" class="org.apache.log4j.DailyRollingFileAppender"> + + <param name="File" value="log/datastore_server_log.txt"/> + <param name="DatePattern" value="'.'yyyy-MM-dd"/> + + <layout class="org.apache.log4j.PatternLayout"> + <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/> + </layout> + + </appender> + + <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender"> + <layout class="org.apache.log4j.PatternLayout"> + <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/> + </layout> + </appender> + + <appender name="NULL" class="org.apache.log4j.varia.NullAppender" /> + + <appender name="EMAIL" class="org.apache.log4j.net.SMTPAppender"> + + <param name="BufferSize" value="512" /> + <param name="SMTPHost" value="localhost" /> + <param name="From" value="dsu@localhost" /> + <param name="To" value="root@localhost" /> + <param name="Subject" value="ATTENTION: DSU Progress Tracking" /> + <param name="EvaluatorClass" value="ch.systemsx.cisd.common.logging.AlwaysTrueTriggeringEventEvaluator" /> + + <layout class="org.apache.log4j.PatternLayout"> + <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/> + </layout> + + <!--filter class="org.apache.log4j.varia.LevelRangeFilter"> + <param name="LevelMin" value="ERROR"/> + <param name="LevelMax" value="FATAL"/> + </filter--> + + </appender> + + <category name="NOTIFY"> + <priority value="info" /> + <appender-ref ref="EMAIL" /> + </category> + + <root> + <priority value="info" /> + <appender-ref ref="DEFAULT" /> + </root> + +</log4j:configuration> diff --git a/deep_sequencing_unit/dist/tracking/etc/tracking-service.properties b/deep_sequencing_unit/tracking/dist/etc/service.properties similarity index 100% rename from deep_sequencing_unit/dist/tracking/etc/tracking-service.properties rename to deep_sequencing_unit/tracking/dist/etc/service.properties diff --git a/deep_sequencing_unit/dist/tracking/etc/tracking-local-database b/deep_sequencing_unit/tracking/dist/etc/tracking-local-database similarity index 100% rename from deep_sequencing_unit/dist/tracking/etc/tracking-local-database rename to deep_sequencing_unit/tracking/dist/etc/tracking-local-database diff --git a/deep_sequencing_unit/dist/tracking/tracking.sh b/deep_sequencing_unit/tracking/dist/tracking.sh similarity index 100% rename from deep_sequencing_unit/dist/tracking/tracking.sh rename to deep_sequencing_unit/tracking/dist/tracking.sh diff --git a/deep_sequencing_unit/etc/tracking-email.template b/deep_sequencing_unit/tracking/etc/email-template.txt similarity index 100% rename from deep_sequencing_unit/etc/tracking-email.template rename to deep_sequencing_unit/tracking/etc/email-template.txt diff --git a/deep_sequencing_unit/tracking/etc/log.xml b/deep_sequencing_unit/tracking/etc/log.xml new file mode 100644 index 0000000000000000000000000000000000000000..5cee0a68436a19a6c4ec4b14b580e6d9f75bf84f --- /dev/null +++ b/deep_sequencing_unit/tracking/etc/log.xml @@ -0,0 +1,19 @@ +<?xml version="1.0" encoding="UTF-8" ?> +<!DOCTYPE log4j:configuration SYSTEM "log4j.dtd"> + +<log4j:configuration xmlns:log4j='http://jakarta.apache.org/log4j/'> + + <appender name="STDOUT" class="org.apache.log4j.ConsoleAppender"> + <layout class="org.apache.log4j.PatternLayout"> + <param name="ConversionPattern" value="%d %-5p [%t] %c - %m%n"/> + </layout> + </appender> + + <appender name="NULL" class="org.apache.log4j.varia.NullAppender" /> + + <root> + <priority value ="info" /> + <appender-ref ref="STDOUT" /> + </root> + +</log4j:configuration> diff --git a/deep_sequencing_unit/etc/tracking-service.properties b/deep_sequencing_unit/tracking/etc/service.properties similarity index 91% rename from deep_sequencing_unit/etc/tracking-service.properties rename to deep_sequencing_unit/tracking/etc/service.properties index a2206ee31c57a45fd6707c6b3dafbc30da65f6f4..15eec5bd9ee76f60e9af29d7fa73c587d5ed6f09 100644 --- a/deep_sequencing_unit/etc/tracking-service.properties +++ b/deep_sequencing_unit/tracking/etc/service.properties @@ -3,7 +3,7 @@ openbis-password=xxx openbis-server-url = http://localhost:8888/openbis -mail.smtp.host = file://targets +mail.smtp.host = file://../targets mail.smtp.user = mail.smtp.password = diff --git a/deep_sequencing_unit/etc/tracking-local-database b/deep_sequencing_unit/tracking/etc/tracking-local-database similarity index 86% rename from deep_sequencing_unit/etc/tracking-local-database rename to deep_sequencing_unit/tracking/etc/tracking-local-database index c77dee7ccd1a19744fafe3bfed214267e3ae2ada..5749013539a9e16e4e4fe6a886e4d621b6cc342b 100644 --- a/deep_sequencing_unit/etc/tracking-local-database +++ b/deep_sequencing_unit/tracking/etc/tracking-local-database @@ -1,2 +1,2 @@ lastSeenSequencingSampleId lastSeenFlowLaneSampleId lastSeenDatasetId -0 0 0 \ No newline at end of file +409 418 66