diff --git a/common/source/java/ch/systemsx/cisd/common/annotation/JsonObject.java b/common/source/java/ch/systemsx/cisd/common/annotation/JsonObject.java deleted file mode 100644 index 997fb57fee2c6e08af4fdb444c9d13f4e94c8ec6..0000000000000000000000000000000000000000 --- a/common/source/java/ch/systemsx/cisd/common/annotation/JsonObject.java +++ /dev/null @@ -1,43 +0,0 @@ -/* - * Copyright 2012 ETH Zuerich, CISD - * - * Licensed under the Apache License, Version 2.0 (the "License"); - * you may not use this file except in compliance with the License. - * You may obtain a copy of the License at - * - * http://www.apache.org/licenses/LICENSE-2.0 - * - * Unless required by applicable law or agreed to in writing, software - * distributed under the License is distributed on an "AS IS" BASIS, - * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. - * See the License for the specific language governing permissions and - * limitations under the License. - */ - -package ch.systemsx.cisd.common.annotation; - -import java.lang.annotation.Documented; -import java.lang.annotation.ElementType; -import java.lang.annotation.Retention; -import java.lang.annotation.RetentionPolicy; -import java.lang.annotation.Target; - -/** - * Annotation all JSON transfered classes should be marked with. It was originally created to - * replace @JsonTypeName annotation which was not visible in the documentation. With @JsonTypeName - * annotation it would be impossible for our users to find a logical type name of a class to be sent - * to JSON-RPC services. - * - * @author pkupczyk - */ -@Target( - { ElementType.TYPE }) -@Retention(RetentionPolicy.RUNTIME) -@Documented -public @interface JsonObject -{ - /** - * Logical type name for annotated type. - */ - public String value(); -} diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/DataSetFileDTO.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/DataSetFileDTO.java index a1a31c556e8cb8172dd32277d523c6ff62e4fa02..bb3d827403f63171b2f21cd841af893002c0079e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/DataSetFileDTO.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/DataSetFileDTO.java @@ -21,7 +21,7 @@ import java.io.Serializable; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Represents a reference to a file/folder within a data set. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/FileInfoDssDTO.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/FileInfoDssDTO.java index 4cd94e926add62c56615a6873b083e7072347a45..912f996a067c54adf7bad90d5251d65141d55651 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/FileInfoDssDTO.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/FileInfoDssDTO.java @@ -22,7 +22,7 @@ import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/NewDataSetDTO.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/NewDataSetDTO.java index 9448c23848582e3e65f7c3cab673c9df959e47e3..02e64cbf74e3037d86f5f56529a8db6a430da268 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/NewDataSetDTO.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/NewDataSetDTO.java @@ -24,7 +24,7 @@ import java.util.Map; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/RmiConversationTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/RmiConversationTest.java index 7676a32406bf79933ace978a022c294ffc6249af..ff8210bef158bb222f7e90a950b41a9e0b924ee6 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/RmiConversationTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/RmiConversationTest.java @@ -44,7 +44,7 @@ import org.testng.annotations.BeforeMethod; import ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked; import ch.systemsx.cisd.common.conversation.ConversationalRmiClient; -import ch.systemsx.cisd.common.conversation.ProgressListener; +import ch.systemsx.cisd.common.conversation.IProgressListener; import ch.systemsx.cisd.common.conversation.RmiConversationController; import ch.systemsx.cisd.common.conversation.ConversationalRmiServer; import ch.systemsx.cisd.common.conversation.RmiServiceFactory; @@ -183,7 +183,7 @@ public class RmiConversationTest extends SystemTestCase return echo(input, delayInMillis); } - public String echo(String input, Integer delayInMillis,ProgressListener progress) { + public String echo(String input, Integer delayInMillis,IProgressListener progress) { long startTime = System.currentTimeMillis(); @@ -206,7 +206,7 @@ public class RmiConversationTest extends SystemTestCase return echoWithoutProgress(input, delayInMillis, null); } - public String echoWithoutProgress(String input, Integer delayInMillis, ProgressListener progress) { + public String echoWithoutProgress(String input, Integer delayInMillis, IProgressListener progress) { try { Thread.sleep(delayInMillis); @@ -222,7 +222,7 @@ public class RmiConversationTest extends SystemTestCase return echoWithStore(input, null); } - public String echoWithStore(String input, ProgressListener progress) { + public String echoWithStore(String input, IProgressListener progress) { DatabaseInstancePE db = new DatabaseInstancePE(); db.setCode(input); @@ -238,7 +238,7 @@ public class RmiConversationTest extends SystemTestCase return echoWithStoreAndProcessingException(input, null); } - public String echoWithStoreAndProcessingException(String input, ProgressListener progress) { + public String echoWithStoreAndProcessingException(String input, IProgressListener progress) { DatabaseInstancePE db = new DatabaseInstancePE(); db.setCode(input); @@ -254,7 +254,7 @@ public class RmiConversationTest extends SystemTestCase return exists(code, null); } - public boolean exists(String code, ProgressListener progress) { + public boolean exists(String code, IProgressListener progress) { Criteria criteria = sessionFactory.getCurrentSession().createCriteria(DatabaseInstancePE.class); criteria.add(Restrictions.eq("code", code)); diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java index c3e014040a73c289ffae210d0a16c199a3e89d7c..f60a3098cb5c1dccf4b0d110e4a0e232b1d3bec1 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/ETLService.java @@ -33,7 +33,7 @@ import ch.systemsx.cisd.authentication.IAuthenticationService; import ch.systemsx.cisd.authentication.ISessionManager; import ch.systemsx.cisd.common.collections.CollectionUtils; import ch.systemsx.cisd.common.conversation.ConversationalRmiClient; -import ch.systemsx.cisd.common.conversation.ProgressListener; +import ch.systemsx.cisd.common.conversation.IProgressListener; import ch.systemsx.cisd.common.conversation.RmiServiceFactory; import ch.systemsx.cisd.common.exceptions.ConfigurationFailureException; import ch.systemsx.cisd.common.exceptions.UserFailureException; @@ -1251,7 +1251,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements public AtomicEntityOperationResult performEntityOperations(String sessionToken, AtomicEntityOperationDetails operationDetails) { - return this.performEntityOperations(sessionToken, operationDetails, new ProgressListener() + return this.performEntityOperations(sessionToken, operationDetails, new IProgressListener() { public void update(String label, int totalItemsToProcess, int numItemsProcessed) @@ -1261,7 +1261,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } public AtomicEntityOperationResult performEntityOperations(String sessionToken, - AtomicEntityOperationDetails operationDetails, ProgressListener progressListener) + AtomicEntityOperationDetails operationDetails, IProgressListener progressListener) { final Session session = getSession(sessionToken); @@ -1312,7 +1312,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private List<Space> createSpaces(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { ArrayList<SpacePE> spacePEsCreated = new ArrayList<SpacePE>(); List<NewSpace> newSpaces = operationDetails.getSpaceRegistrations(); @@ -1328,7 +1328,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private List<Material> createMaterials(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { MaterialHelper materialHelper = new MaterialHelper(session, businessObjectFactory, getDAOFactory(), @@ -1380,7 +1380,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private List<Project> createProjects(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { ArrayList<ProjectPE> projectPEsCreated = new ArrayList<ProjectPE>(); List<NewProject> newProjects = operationDetails.getProjectRegistrations(); @@ -1413,7 +1413,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private List<Sample> createSamples(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { List<NewSample> newSamples = operationDetails.getSampleRegistrations(); List<NewSample> containerSamples = new ArrayList<NewSample>(); @@ -1443,7 +1443,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private List<Sample> updateSamples(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { ArrayList<SamplePE> samplePEsUpdated = new ArrayList<SamplePE>(); List<SampleUpdatesDTO> sampleUpdates = operationDetails.getSampleUpdates(); @@ -1462,7 +1462,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements * order */ private List<ExternalData> createDataSets(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { ArrayList<DataPE> dataSetsCreated = new ArrayList<DataPE>(); List<? extends NewExternalData> dataSetRegistrations = @@ -1481,7 +1481,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private List<ExternalData> updateDataSets(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { List<DataPE> dataSetsUpdated = new ArrayList<DataPE>(); int index = 0; @@ -1518,7 +1518,7 @@ public class ETLService extends AbstractCommonServer<IETLLIMSService> implements } private ArrayList<Experiment> createExperiments(Session session, - AtomicEntityOperationDetails operationDetails, ProgressListener progress) + AtomicEntityOperationDetails operationDetails, IProgressListener progress) { ArrayList<Experiment> experimentsCreated = new ArrayList<Experiment>(); List<NewExperiment> experimentRegistrations = operationDetails.getExperimentRegistrations(); diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/NewVocabulary.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/NewVocabulary.java index 9271118dfbd7a98f34c6b42088320d4ae0d85462..26006eb1995a6775820a01573a08ed884ca86756 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/NewVocabulary.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/NewVocabulary.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * New controlled vocabulary. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/UpdatedVocabularyTerm.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/UpdatedVocabularyTerm.java index 016b8547ef72dd132a597afa84638e2a484b99a3..660e58981449eeecbe1fcb56a518af105809b71f 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/UpdatedVocabularyTerm.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/UpdatedVocabularyTerm.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * A vocabulary term to update. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTermBatchUpdateDetails.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTermBatchUpdateDetails.java index beb8b060ad706b2af1337eebe22adb4347780fe2..eef96e6e9f834cc4c359416ff40cfe1af066b25b 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTermBatchUpdateDetails.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTermBatchUpdateDetails.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Holds information about which vocabulary term attributes should be updated. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceDescription.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceDescription.java index 199babfa9fae17c65d7233ef17e386a132aa5581..0a1589fee6bb9f84ac67f1a3bfb3cae12af920b7 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceDescription.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceDescription.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Bean with information about aggregation services that provide data. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceType.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceType.java index 21658e5db12a50ac6f7db32af6e2290c7141afda..974d6f04522b306ccc8262d6b73bed457a125693 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceType.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/AggregationServiceType.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * The different kinds of aggregation services. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryDescription.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryDescription.java index 19a413aa84a515cb7673fa000c59f90d84daa642..a1879725ee67f8285e8175f8bfc5e8b007628b98 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryDescription.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryDescription.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto; import java.io.Serializable; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Description of a query. Contains everything needed on client side to show to the user what diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumn.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumn.java index 0fa5d02bc117925a7b521ec8c4ecad1d3e353314..79ae4d326c831c2504b257c23bd0d76d0fe8f7f4 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumn.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumn.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Column of query data. Defines title and data type. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumnDataType.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumnDataType.java index 2495ddbba6c10a723b101f7c315703fa19bfaec8..7aaee28da352915ae7ea9097189c292a28f0a135 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumnDataType.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableColumnDataType.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Data types of {@link QueryTableModel}. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableModel.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableModel.java index 747dc3b3dffd36e54844dc0799a54f7563ad1009..7151915cbee4652fc48e8e07801d255c6e60fb51 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableModel.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/QueryTableModel.java @@ -23,7 +23,7 @@ import java.util.List; import org.codehaus.jackson.annotate.JsonIgnore; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Model of query data. diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/ReportDescription.java b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/ReportDescription.java index f6590b757a28c395ab3a56d126a5f1ebd120b7ab..b5eeeb58931e36eeec850fe706ec546353b919eb 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/ReportDescription.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/plugin/query/shared/api/v1/dto/ReportDescription.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.query.shared.api.v1.dto; import java.io.Serializable; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Bean with basic meta data of a service offered by a Data Store Server. diff --git a/openbis_api/.classpath b/openbis_api/.classpath index 953d1cae3dd66763187a4b8ce0448ec93a2c702b..7b9c00260948bd2d434e7758a08b5de116fa01d7 100644 --- a/openbis_api/.classpath +++ b/openbis_api/.classpath @@ -7,5 +7,6 @@ <classpathentry kind="lib" path="/libraries/jackson/jackson-core-asl.jar" sourcepath="/libraries/jackson/jackson-src.zip"/> <classpathentry combineaccessrules="false" kind="src" path="/common"/> <classpathentry kind="lib" path="/libraries/spring/spring-core.jar"/> + <classpathentry kind="lib" path="/libraries/cisd-base/cisd-base.jar" sourcepath="/libraries/cisd-base/cisd-base-src.zip"/> <classpathentry kind="output" path="targets/classes"/> </classpath> diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/ControlledVocabularyPropertyType.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/ControlledVocabularyPropertyType.java index a30c8ad2cb8203819740a4aac8c1e2327bccebd7..a42dec83705fbc89e451bd690dc09d246fc68a8d 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/ControlledVocabularyPropertyType.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/ControlledVocabularyPropertyType.java @@ -21,7 +21,7 @@ import java.util.List; import org.apache.commons.lang.builder.ToStringBuilder; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Vocabulary; /** diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSet.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSet.java index f2319996576ffd171e1290d6346005023ac6d889..1784ff876a6eb968c303ec4755549ef4e231dc4b 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSet.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSet.java @@ -31,7 +31,7 @@ import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Immutable value object representing a data set. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOption.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOption.java index 7e60c5edd64676b4f884eba002bb7c5a21de5337..ece756283d308f0c7484b47060276abc0489a115 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOption.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOption.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.FetchOption; /** diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOptions.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOptions.java index 352512c83bc4f3c930435ccec90053ec99a652dc..c6ab60d256cc9842e26a03d414c1afcddaf0e677 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOptions.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetFetchOptions.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.FetchOptions; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetType.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetType.java index 233154fff00f51e9dd3a6f27d3f794fe6f3b4b55..cfe569ab56a80fa2ef89a14c22752981f9085a25 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetType.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/DataSetType.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Immutable value object representing a data set type. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/EntityRegistrationDetails.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/EntityRegistrationDetails.java index fec3b35bf83cedbd7a4828a6fce16b59ff734d45..b753a5d1a0d86e7599080985ed7e603016e8cbc7 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/EntityRegistrationDetails.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/EntityRegistrationDetails.java @@ -24,7 +24,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * A class that encapsulates the details about entity registration. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Experiment.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Experiment.java index 0c644787cea194c49579e21b63ca297b1e673640..937a4e1ca174aeeb7d1059d46f5d56ad52b5c509 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Experiment.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Experiment.java @@ -26,7 +26,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.IIdentifierHolder; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Material.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Material.java index bb9b3a93cdd08650d1b09a487169dd27ad9bd3c8..56a65c7a489a6c094f541d685857d52757db6b47 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Material.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Material.java @@ -20,7 +20,7 @@ import java.util.Collections; import java.util.HashMap; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * @author jakubs diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialIdentifier.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialIdentifier.java index aab851890e262673d6b9b9200890107b6be4e624..b417046e28173946f40f61fba6ee980f7a3fb76b 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialIdentifier.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialIdentifier.java @@ -20,7 +20,7 @@ import java.io.Serializable; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * @author jakubs diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialTypeIdentifier.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialTypeIdentifier.java index a36ad64a0037117571092e03a335ceb1a4070bfa..ecdad48d35e531399b3c6e606a080dee8104b7d1 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialTypeIdentifier.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/MaterialTypeIdentifier.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * duplicated from ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.MaterialTypeIdentifier diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/NewVocabularyTerm.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/NewVocabularyTerm.java index 16a8d018ab8dc063ea62125eba03a8bcb65803cf..3006c706ebe39cb8d3d12d43147b818b1d872140 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/NewVocabularyTerm.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/NewVocabularyTerm.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * A value object representing a new vocabulary term to be created by the openBIS backend. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Project.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Project.java index a46976a3c85c0463385674b6cebbcd44bb67d315..8ff21388f8087e5ab07555146b2a3b1dc7f8ae0e 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Project.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Project.java @@ -20,7 +20,7 @@ import java.io.Serializable; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.IIdentifierHolder; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyType.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyType.java index 83e3d61bf83de3df4fc0183941ecac67afb5ca77..5097a83de60d0834847b92e9125492423bec0ea0 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyType.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyType.java @@ -23,7 +23,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataTypeCode; /** diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyTypeGroup.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyTypeGroup.java index f86019ce9de44bf79b1ed35ca6f4b097c84a2a18..bb2b23e22457b66c45b989bece975bb2045badb4 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyTypeGroup.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/PropertyTypeGroup.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Immutable value object representing a data set type. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Role.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Role.java index 865767ffb3ea6b7a9be4c7c1bba64ad2dae0443c..9d4d32ef2805f17ecd499c2cbe10f2d8f6a43d6f 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Role.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Role.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Immutable value object representing an authorization role. A role has a code and a flag which diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Sample.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Sample.java index 91023d09fcc6bfebe3dcccaeae6a8b4e81636655..5f515fdaf04c551430729647776af54adef9d289 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Sample.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Sample.java @@ -31,7 +31,7 @@ import org.apache.commons.lang.builder.ToStringStyle; import org.codehaus.jackson.annotate.JsonIgnore; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.DataSet.Connections; import ch.systemsx.cisd.openbis.generic.shared.basic.IIdentifierHolder; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SampleFetchOption.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SampleFetchOption.java index 127b44def9ba1617b1dfcf1be32e0825935f25f3..d5fcdf53e8219ad411c8adbc2c4ae7b48e2f8c4e 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SampleFetchOption.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SampleFetchOption.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.FetchOption; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchCriteria.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchCriteria.java index f498ce3f98a4260cc7e10ec4430a7e74ff3f6b3e..cabb86fcfafedc8ec165df58a482cb4bc77b7214 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchCriteria.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchCriteria.java @@ -26,7 +26,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * A (mutable) object representing the specification of a search. A search is specified by diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchSubCriteria.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchSubCriteria.java index e6f7e1ed8d58e65e21de7e678401ff321b2c94c4..a135e3957eb64745884ea57690023530fe1522b2 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchSubCriteria.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchSubCriteria.java @@ -7,7 +7,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchableEntityKind.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchableEntityKind.java index eb73d526a2cceb938a910d819e70dfb04f367369..efadcd4f3bc3642883e726bfc09c9e32b8581304 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchableEntityKind.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SearchableEntityKind.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.openbis.generic.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * An enum listing the different kinds of entities that are searchable. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SpaceWithProjectsAndRoleAssignments.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SpaceWithProjectsAndRoleAssignments.java index f15af610513a6a28cd3c294b681bf00470bf61ca..8d8d62129866cb7533dc592dc0185ce36c04e92b 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SpaceWithProjectsAndRoleAssignments.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/SpaceWithProjectsAndRoleAssignments.java @@ -28,7 +28,7 @@ import java.util.Set; import org.codehaus.jackson.annotate.JsonIgnore; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.ICodeHolder; diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Vocabulary.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Vocabulary.java index cc37448905a2a80e0859d8bcf4d484975eb57558..a7243b091021819539f26f61790773951e1d4e60 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Vocabulary.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/Vocabulary.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Immutable value object representing an openBIS vocabulary. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/VocabularyTerm.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/VocabularyTerm.java index 2494fd28798da12298abe27b645d9c5ceacb1131..908e4ceba8f8949f7377849bb564c8c23e6c83fd 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/VocabularyTerm.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/api/v1/dto/VocabularyTerm.java @@ -23,7 +23,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.api.v1.IGeneralInformationService; /** diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/TechId.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/TechId.java index c62eb5418397d8b75be89fa35f75a21a7e4caa4f..d2e6439124f20ba6f81e09b6d6cb9f0d2ec4021e 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/TechId.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/TechId.java @@ -21,7 +21,7 @@ import java.util.ArrayList; import java.util.Collection; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ServiceVersionHolder; /** diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DataTypeCode.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DataTypeCode.java index f23bcd4fb9122f44febcd3f97862d1ac34133ccb..fe2019552af27c17daf3c8b827b69fe2e4ab3992 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DataTypeCode.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DataTypeCode.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Available types of entity properties. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DatabaseInstance.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DatabaseInstance.java index a0c0982782c14d9cc624b09161662a47578cb614..ffa4c58038b13861d92ea6084832d1aea380bc99 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DatabaseInstance.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/DatabaseInstance.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * @author Franz-Josef Elmer diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Person.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Person.java index e2b684f92ed5f833fa2ef0a831c2f8d9ab27a9a6..d936e144fe9ef4fb6a6c6f7fc73c0c12da3da881 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Person.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Person.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * The <i>GWT</i> equivalent PersonPE. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Vocabulary.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Vocabulary.java index e818a988c427922412e5e337da56e3b44faa346a..c642d8870da68e8853606186f88566be775439dd 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Vocabulary.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/Vocabulary.java @@ -20,7 +20,7 @@ import java.util.ArrayList; import java.util.List; import ch.systemsx.cisd.common.annotation.CollectionMapping; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Controlled vocabulary. diff --git a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTerm.java b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTerm.java index 937b5e9e59c38fed3767a0bba2d4ee97f584b774..c7fa25a291f9cf17772683cfea06b44727cdb76b 100644 --- a/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTerm.java +++ b/openbis_api/source/java/ch/systemsx/cisd/openbis/generic/shared/basic/dto/VocabularyTerm.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.generic.shared.basic.dto; import org.codehaus.jackson.annotate.JsonIgnore; import ch.systemsx.cisd.common.annotation.BeanProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * A vocabulary term. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/AutoRescaleIntensityImageTransformerFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/AutoRescaleIntensityImageTransformerFactory.java index bd27b9608b2f6e1c6f5684a4560bd0a69be6a1fd..8b8dc8d3942e83b6126ced2cdbfe636f86056df9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/AutoRescaleIntensityImageTransformerFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/AutoRescaleIntensityImageTransformerFactory.java @@ -21,7 +21,7 @@ import java.awt.image.BufferedImage; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.common.image.IntensityRescaling; import ch.systemsx.cisd.common.image.IntensityRescaling.Levels; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/BitShiftingImageTransformerFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/BitShiftingImageTransformerFactory.java index f211d279693cd77ca8f9e64b83e12c2d73fa5bd3..c63ca136753b8ba7ad708ba8962c2d96bdc93923 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/BitShiftingImageTransformerFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/BitShiftingImageTransformerFactory.java @@ -5,7 +5,7 @@ import java.awt.image.BufferedImage; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.common.image.IntensityRescaling; /** diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/IntensityRangeImageTransformerFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/IntensityRangeImageTransformerFactory.java index 86572dec846634637fbecc1295e0d382c13d4c69..32932f046536d0a0db1ba30ad13a217422733ff3 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/IntensityRangeImageTransformerFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/IntensityRangeImageTransformerFactory.java @@ -22,7 +22,7 @@ import java.awt.image.BufferedImage; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.common.image.IntensityRescaling; import ch.systemsx.cisd.common.image.IntensityRescaling.Levels; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/IntensityRangeReductionFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/IntensityRangeReductionFactory.java index f871f8f14cc6bfac5ab597d85cebc89ed8f6b721..82b3a4c97079a9eeca15d1a4d17758cd967a0c36 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/IntensityRangeReductionFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dynamix/IntensityRangeReductionFactory.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dynamix; import java.awt.image.BufferedImage; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/LoadImageConfiguration.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/LoadImageConfiguration.java index 9c78405a5ea207d31bf49457e378ea3aea0fe925..bf1d57b1ab4f3dd8387a8959fd755539ed1f17a1 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/LoadImageConfiguration.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/screening/shared/api/v1/LoadImageConfiguration.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.screening.shared.api.v1; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.ImageSize; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ExampleImageTransformerFactory.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ExampleImageTransformerFactory.java index eecb785ef0f4ec030241878ed0c773576f5eec9b..80e48bbb785576dfe9e9fe59aa5972cb046fd191 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ExampleImageTransformerFactory.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/ExampleImageTransformerFactory.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.client.api.v1; import java.awt.image.BufferedImage; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/WellImageCache.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/WellImageCache.java index 7e0c3e4d7c7014b960328e4d484a753a2eafbb38..10763658c3fc534fa6a9cb80f653c7f44f8c73a2 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/WellImageCache.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/client/api/v1/WellImageCache.java @@ -22,7 +22,7 @@ import java.util.HashMap; import java.util.Map; import java.util.concurrent.CountDownLatch; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto.DatasetIdentifier; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/AbstractFormatSelectionCriterion.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/AbstractFormatSelectionCriterion.java index 2587250145e565ca490d0e9a2f0d250bc3431fad..c05b6d5fd805b1f8bddedc31a45d0d91102bafff 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/AbstractFormatSelectionCriterion.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/AbstractFormatSelectionCriterion.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Abstract super class of {@link IImageRepresentationFormatSelectionCriterion} which accepting diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ColorDepthCriterion.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ColorDepthCriterion.java index 3cfb40633921781073f978aa36cd2616ca0d6c2d..2b809970061d5bc6c4d57b1f67a8302442d9b5fc 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ColorDepthCriterion.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ColorDepthCriterion.java @@ -20,7 +20,7 @@ import java.util.Arrays; import java.util.HashSet; import java.util.Set; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java index b4bf0d9ad8e0e914345c5d4af189daea27aa3b3a..ab195b007206ea9af6cadfae4ca4db5fcec79890 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetIdentifier.java @@ -2,7 +2,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Contains data which uniquely define a dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetImageRepresentationFormats.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetImageRepresentationFormats.java index 30905710ca022e967d63e1bfa1a2a1257e012713..a6d09f57fbb285e2f8fcafaf9f6c0a483dd7bb88 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetImageRepresentationFormats.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetImageRepresentationFormats.java @@ -24,7 +24,7 @@ import java.util.List; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java index 7ae0c7f40632663360e0c8b370b87944b2bd51f1..207999407cb578acb34d3a0e7900b57245e17bfb 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/DatasetReference.java @@ -7,7 +7,7 @@ import java.util.Collections; import java.util.Date; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Description of one plate-based screening dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentIdentifier.java index 3850b7b3cda12b3207e2011cb717a83121c2a9f5..3ecb95f2f02aff28cb2a74eeda525fdf2337f659 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentIdentifier.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentImageMetadata.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentImageMetadata.java index d2b1e27b90560aea06e9bbc92df53f22e9f9bb9e..512cba6e817e3b8048ba9f35fddddfeb86922949 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentImageMetadata.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ExperimentImageMetadata.java @@ -21,7 +21,7 @@ import java.util.ArrayList; import java.util.Collections; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureInformation.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureInformation.java index a7dff78df5a1b06df9de2ade9ceebbb0282f3010..6f980fb8e2c970e59548cf21ffc2f1c305c1e26f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureInformation.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureInformation.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java index 99ea3115dece852e968b22fe8f521c6c9779e89b..f2fbcbfc98179edf70512fe5c192d09614da0870 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVector.java @@ -6,7 +6,7 @@ import java.util.List; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Feature vector for one well. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java index ed0604d1c415883c2663c69fd5742bc3da34cf24..1ed56b530795b4934f1fd0d633593ba45e0caf08 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDataset.java @@ -3,7 +3,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java index f48a9b3a7882816b0fd7dbb64dad25591eace7e3..3fa2200a23fa1d83da6deb71d4460c23f8b23889 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetReference.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.util.Date; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Description of one feature vector dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetWellReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetWellReference.java index 18b403eb633505633d5034dc57e7af2154dba883..e3756f61b3bcd29b40557b555f09af547d357f6f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetWellReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorDatasetWellReference.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.util.Date; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorWithDescription.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorWithDescription.java index 4903ee39dc7e11fa8f1139e98c803e3ca75c8f1d..ffbfe653dc90243c274cf6d8a48e87da9113aa9b 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorWithDescription.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FeatureVectorWithDescription.java @@ -3,7 +3,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FileTypeCriterion.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FileTypeCriterion.java index b7d369665226ebe522dbd990b77b429a504733b8..68d82210e78b872fae62ade0f6cdd6540883489a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FileTypeCriterion.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/FileTypeCriterion.java @@ -20,7 +20,7 @@ import java.util.Arrays; import java.util.HashSet; import java.util.Set; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Geometry.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Geometry.java index 996bd1ed749cff215a93c59b2dcae400657ce0a4..191e0c2284d0e03fa0b12d56952c6bdb382804b5 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Geometry.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Geometry.java @@ -20,7 +20,7 @@ import java.io.Serializable; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java index 8bf1bd5aeb07690c934b808fbed5d6385e08c616..5db2a6435c9649d4e65b9c5911e7175de2bb91b9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IDatasetIdentifier.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Contains data which uniquely define a dataset diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java index 0d6a672b01d19bb159d31dc90162e76a68c31878..ab3c33ec3c740d6c99b651dd168db792d79560e4 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IFeatureVectorDatasetIdentifier.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Uniquely Identifies a feature vector dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java index 809e8962f5d6512f59c2dc1226fd970d2afd4f42..1ece3c24734c0684d272f22cbac81bba797d3a75 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageDatasetIdentifier.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Contains data which uniquely define an image dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageRepresentationFormatSelectionCriterion.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageRepresentationFormatSelectionCriterion.java index ff72e756ed5ff3242d694aa0f1dc502124000b2b..cbeaeb66dcba93a6d350fe636e53f9c6dd4afee3 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageRepresentationFormatSelectionCriterion.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/IImageRepresentationFormatSelectionCriterion.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Interface of an image selection criterion based on {@link ImageRepresentationFormat}. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageChannel.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageChannel.java index eb017977435110633bca15f3075bb1c79532b780..794270fb4eae37ca839495de558b1835059d505a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageChannel.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageChannel.java @@ -22,7 +22,7 @@ import java.util.List; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java index 45115a66e97f6155abaa8c5500ef3d58fdf950b4..9cdb458d68852147c942acc0a0ae706acaaecab2 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetMetadata.java @@ -7,7 +7,7 @@ import java.util.ArrayList; import java.util.Collections; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Metadata information about images in a specified dataset. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java index 33fdbf92f4db795355abae70364c91a7987f6e05..8e414e4f86e3fc6b54d4803ad0cd9dcb231fe08f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageDatasetReference.java @@ -23,7 +23,7 @@ import org.codehaus.jackson.annotate.JsonTypeInfo; import org.codehaus.jackson.annotate.JsonTypeInfo.As; import org.codehaus.jackson.annotate.JsonTypeInfo.Id; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageRepresentationFormat.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageRepresentationFormat.java index 16e813b38fc9cc57fab1321d852e9546fb62a0d6..790989645e6f0a56e5ee672c907bfc99c60a4657 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageRepresentationFormat.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageRepresentationFormat.java @@ -25,7 +25,7 @@ import org.apache.commons.lang.builder.HashCodeBuilder; import org.apache.commons.lang.builder.ToStringBuilder; import org.apache.commons.lang.builder.ToStringStyle; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageSize.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageSize.java index 1d61fa5ead17db62a82ce32374d5e4b446e8f88d..9edc1b944435da5dc00864236fe8d6cbdd3d029a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageSize.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageSize.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageTransformationInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageTransformationInfo.java index a71d5ccb8a208bf5b03453f85402fe7d5cb5cf4b..ddf93340dc62e0066aaa9baee374038db9a10926 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageTransformationInfo.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/ImageTransformationInfo.java @@ -20,7 +20,7 @@ import java.io.Serializable; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Material.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Material.java index 429052fe3d34fff7889594de6ca5a0c5917a00ca..e8332cd1eb5d149f45ed0b852a3dd72bb992e405 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Material.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Material.java @@ -20,7 +20,7 @@ import java.util.Collections; import java.util.HashMap; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialIdentifier.java index 3c9f5fc603f94b682afb5de5ad8b53a525c242e1..7dc2c1a44160a50c1e911f061246986cabc663d9 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialIdentifier.java @@ -20,7 +20,7 @@ import java.io.Serializable; import org.codehaus.jackson.annotate.JsonIgnore; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * A unique identifier for a material like e.g. a gene. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialTypeIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialTypeIdentifier.java index c03e7980862abd178d716d8eb2abbbd62e1ff2e3..7ae91efbd3617bd245621574542c777e39b74f3a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialTypeIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MaterialTypeIdentifier.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import java.io.Serializable; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MicroscopyImageReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MicroscopyImageReference.java index 08b2ba38b9a1fe6ebd10582f7d70c1eb3b9992d6..7c82c880bd2868819c3cb582eb341e1028536e67 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MicroscopyImageReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/MicroscopyImageReference.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/OriginalCriterion.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/OriginalCriterion.java index 367577fba0453123923cae71e7983690ffdc9af9..3c00137677428b55f4c8eb1d1033b135a9a0c4b5 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/OriginalCriterion.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/OriginalCriterion.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java index 5015b6f8f18da734f7b1e2cdd8879b3fa8f5c4ea..dbd0a13bb23ce1e6937efa51fb5b026721f86caa 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/Plate.java @@ -5,7 +5,7 @@ import java.io.ObjectInputStream; import org.codehaus.jackson.annotate.JsonSubTypes; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java index d043182d0b033d2bc461ac1111a9a8d4b74234bb..c149f0c834748016b432ed57f1d242178d45e168 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateIdentifier.java @@ -3,7 +3,7 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; import org.codehaus.jackson.annotate.JsonIgnore; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Contains data which uniquely define a plate. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java index 720665c3e1b34777ba14677a6707d42fdce9cd32..35c37285a6f420b4f9f7a85350e9bcc6f0b8e11f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateImageReference.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateMetadata.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateMetadata.java index 89e975015c9aa1149ce0378bbebb5de8b4fd968a..0310a6dcf234b15f88de963538728ed2bc1a1e81 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateMetadata.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateMetadata.java @@ -22,7 +22,7 @@ import java.util.HashMap; import java.util.List; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellMaterialMapping.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellMaterialMapping.java index 1f81770ecacc904d67dd7586fee9dea18cedb4b2..f27b8d27a3a3b54fa70fbef58d33670e2406c010 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellMaterialMapping.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellMaterialMapping.java @@ -22,7 +22,7 @@ import java.util.List; import org.codehaus.jackson.annotate.JsonProperty; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellReferenceWithDatasets.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellReferenceWithDatasets.java index 6a595728451062c3b03cb79946f3cf34a0a9b716..c6913c4a4e554996145bc00691392a79f751332a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellReferenceWithDatasets.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/PlateWellReferenceWithDatasets.java @@ -20,7 +20,7 @@ import java.io.Serializable; import java.util.Collections; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/SizeCriterion.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/SizeCriterion.java index 12a7c128bd86853e7d1c09d0a24c8f3bdfe7b0a0..6e30c48fae13203aab365ee88acf8e96a1b90426 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/SizeCriterion.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/SizeCriterion.java @@ -21,7 +21,7 @@ import java.util.Collections; import java.util.Comparator; import java.util.List; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellIdentifier.java index 1e4565705b914f72959d4f31905cf1648e4a575b..a3369bc559091837567a4be1eaf14a335505ca53 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellIdentifier.java @@ -1,6 +1,6 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.api.v1.dto; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; /** * Contains data which uniquely define a well on a plate. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellMetadata.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellMetadata.java index 2d49962139f0f0bcdd7f5beafd72487b788504b6..1b246a4cb14c985a3977dcf35173870628e0fe8d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellMetadata.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellMetadata.java @@ -20,7 +20,7 @@ import java.util.Collections; import java.util.HashMap; import java.util.Map; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java index 86099bffe7b0cfe56a95f46679ef81812afaafe6..4ffc85f3e0cafadce491e3d7bfa548e9d22b3d27 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/api/v1/dto/WellPosition.java @@ -5,7 +5,7 @@ import java.util.ArrayList; import java.util.List; import java.util.StringTokenizer; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java index 7c05f0aa44179a37fb0e97ed906a1d06617f4330..896497c04dff276612e769cbc4135385d1261c2e 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/dss/screening/server/DssServiceRpcScreeningTest.java @@ -28,7 +28,6 @@ import java.util.List; import org.aopalliance.intercept.MethodInterceptor; import org.aopalliance.intercept.MethodInvocation; import org.apache.commons.lang.SerializationUtils; -import org.codehaus.jackson.annotate.JsonTypeName; import org.jmock.Expectations; import org.jmock.Mockery; import org.springframework.aop.framework.ProxyFactory; @@ -38,6 +37,7 @@ import org.testng.annotations.AfterMethod; import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.base.convert.NativeTaggedArray; import ch.systemsx.cisd.base.image.IImageTransformer; import ch.systemsx.cisd.base.image.IImageTransformerFactory; @@ -113,7 +113,7 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.ImgIm */ public class DssServiceRpcScreeningTest extends AssertJUnit { - @JsonTypeName("ImageTransformerFactory") + @JsonObject("ImageTransformerFactory") private static final class ImageTransformerFactory implements IImageTransformerFactory { private static final long serialVersionUID = 1L; @@ -278,8 +278,8 @@ public class DssServiceRpcScreeningTest extends AssertJUnit { 1, 2 }; String[][] featureCodesPerDataset = new String[][] { - { "f1", "f2" }, - { "f2", "f3" } }; + { "f1", "f2" }, + { "f2", "f3" } }; prepareListAnalysisDatasets(dataSetIDs); prepareGetFeatureDefinitions(dataSetIDs, featureCodesPerDataset); @@ -303,16 +303,16 @@ public class DssServiceRpcScreeningTest extends AssertJUnit FeatureInformation[][] featureCodesPerDataset = new FeatureInformation[][] { - { - new FeatureInformation("f1", "Feature 1", - "The first feature."), - new FeatureInformation("f2", "Feature 2", - "The second feature.") }, - { - new FeatureInformation("f2", "Feature 2", - "The second feature."), - new FeatureInformation("f3", "Feature 3", - "The third feature.") } }; + { + new FeatureInformation("f1", "Feature 1", + "The first feature."), + new FeatureInformation("f2", "Feature 2", + "The second feature.") }, + { + new FeatureInformation("f2", "Feature 2", + "The second feature."), + new FeatureInformation("f3", "Feature 3", + "The third feature.") } }; prepareListAnalysisDatasets(dataSetIDs); prepareGetFeatureDefinitions(dataSetIDs, featureCodesPerDataset); @@ -338,12 +338,12 @@ public class DssServiceRpcScreeningTest extends AssertJUnit FeatureVectorDatasetReference r2 = createFeatureVectorDatasetReference(DATASET_CODE2); String[][] featureCodesPerDataset = new String[][] { - { "F1", "F2" } }; + { "F1", "F2" } }; prepareLoadFeatures(new long[] { 1 }, featureCodesPerDataset); featureCodesPerDataset = new String[][] { - { "F2" } }; + { "F2" } }; prepareLoadFeatures(new long[] { 2 }, featureCodesPerDataset); @@ -825,8 +825,8 @@ public class DssServiceRpcScreeningTest extends AssertJUnit new PlateFeatureValues(NativeTaggedArray .toByteArray(new MDFloatArray(new float[][] { - { 3.5f * dataSetId + offset }, - { 1.25f * dataSetId + offset } }))); + { 3.5f * dataSetId + offset }, + { 1.25f * dataSetId + offset } }))); ImgFeatureValuesDTO value = new ImgFeatureValuesDTO(0.0, 0.0, matrixValues, 0L); value.setFeatureDefId(featureDefIds[featureDefIx]); diff --git a/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/JsonAnnotationTest.java b/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/JsonAnnotationTest.java index 5c459c48da757e274b3cfbcfeb845fe6914ab9a9..420ac44c150b404fcf04223f5cd9a45e7489c52d 100644 --- a/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/JsonAnnotationTest.java +++ b/screening/sourceTest/java/ch/systemsx/cisd/openbis/screening/systemtests/JsonAnnotationTest.java @@ -31,7 +31,7 @@ import org.reflections.Reflections; import org.testng.annotations.BeforeClass; import org.testng.annotations.Test; -import ch.systemsx.cisd.common.annotation.JsonObject; +import ch.systemsx.cisd.base.annotation.JsonObject; import ch.systemsx.cisd.common.api.server.json.ClassReferences; import ch.systemsx.cisd.common.api.server.json.JsonUniqueCheckIgnore; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.IDssServiceRpcGeneric; @@ -65,10 +65,10 @@ public class JsonAnnotationTest private void findAllClassesUsedByJsonRpcApi() { Class<?>[] jsonRpcInterfaces = - { IDssServiceRpcGeneric.class, IScreeningApiServer.class, - IGeneralInformationChangingService.class, - IGeneralInformationService.class, IWebInformationService.class, - IQueryApiServer.class, IDssServiceRpcScreening.class }; + { IDssServiceRpcGeneric.class, IScreeningApiServer.class, + IGeneralInformationChangingService.class, + IGeneralInformationService.class, IWebInformationService.class, + IQueryApiServer.class, IDssServiceRpcScreening.class }; for (Class<?> jsonClass : jsonRpcInterfaces) { @@ -76,7 +76,7 @@ public class JsonAnnotationTest } } - @Test(enabled = false) + @Test public void jsonClassesAreAnnotatedWithJsonObject() { Collection<Class<?>> classesWithoutJsonObject = getAllJsonRpcClassesWithoutJsonObject();