From 358e364a7965fc141b156de46c47924ffd8bc20c Mon Sep 17 00:00:00 2001
From: felmer <franz-josef.elmer@id.ethz.ch>
Date: Wed, 27 Jun 2018 14:48:01 +0200
Subject: [PATCH] SSDM-6731: change 'sample' and 'experiment' to 'object' and
'collection' in all places (except ELN) of the getting started web page
---
.../doc/getting-started-with-openBIS.html | 22 +++++++++----------
1 file changed, 11 insertions(+), 11 deletions(-)
diff --git a/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html b/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html
index 1ac0db79bd8..d68c42953b5 100644
--- a/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html
+++ b/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html
@@ -65,7 +65,7 @@
<li>Log in to <a href="https://${HOSTNAME}:8443/openbis">openBIS</a> as admin.
</li>
- <li>Open the Experiment Browser by clicking on the menu item Browse -> Experiments and open the default experiment. </li>
+ <li>Open the Collection Browser by clicking on the menu item Browse -> Collections and open the default collection. </li>
<li>Click on the Data Set Uploader tab and upload one or several files.</li>
@@ -97,7 +97,7 @@
</ol>
<div class="text">
- It will create an experiment in project /TEST/PROT which shows a list of proteins. We challenge you to go find it
+ It will create an collection in project /TEST/PROT which shows a list of proteins. We challenge you to go find it
in the running application !
</div>
@@ -109,9 +109,9 @@
<li>Log in to <a href="https://${HOSTNAME}:8443/openbis">openBIS</a> as admin.
</li>
- <li>Open experiment type browser by clicking on menu item Admin -> Types -> Experiment Types.</li>
+ <li>Open collection type browser by clicking on menu item Admin -> Types -> Collection Types.</li>
- <li>Create experiment type SIRNA_HCS.</li>
+ <li>Create collection type SIRNA_HCS.</li>
<li>At the console execute the command:
@@ -137,7 +137,7 @@
</div>
</li>
- <li>A flow cell output from a HiSeq2000 is registered as a data set of the sample 120420_SN792_0109_BC0P8LACXX.<br>
+ <li>A flow cell output from a HiSeq2000 is registered as a data set of the object 120420_SN792_0109_BC0P8LACXX.<br>
Additionally a data set is registered for each flow lane:
@@ -159,14 +159,14 @@
</div>
</li>
- <li> For creating some samples we use the 'Sample Registration'. This is available under the 'Import' menu: <br>
- Import -> Sample Registration -> Choose sample type '(multiple)' and browse to the file:
+ <li> For creating some objects we use the 'Object Registration'. This is available under the 'Import' menu: <br>
+ Import -> Object Registration -> Choose object type '(multiple)' and browse to the file:
<div class="sourcecode"> ${DSS_ROOT_DIR}/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv</div>
Tick 'Update existing'and press the 'Save' button. <br>
- This created several samples which can be viewed via Browse -> Samples. You might need to select the Sample Type 'all' <br>
+ This created several objects which can be viewed via Browse -> Objects. You might need to select the Object Type 'all' <br>
and the Space 'all'. <br>
- Note that the samples are in a parent-/child relationship indicated by the samples shown in the 'Parents' column.
+ Note that the objects are in a parent-/child relationship indicated by the objects shown in the 'Parents' column.
</li>
<br>
@@ -183,8 +183,8 @@
touch ${DSS_ROOT_DIR}/register-unaligned/.MARKER_is_finished_120420_SN792_0109_BC0P8LACXX;
</div>
<br>
- The demultiplexed FASTQ files are a data set of the samples BSSE-QGF-LIBRARY-1 and BSSE-QGF-LIBRARY-2. Note that lane 1 and two <br>
- contained both samples which results in two FASTQ data sets for each sample.
+ The demultiplexed FASTQ files are a data set of the objects BSSE-QGF-LIBRARY-1 and BSSE-QGF-LIBRARY-2. Note that lane 1 and two <br>
+ contained both objects which results in two FASTQ data sets for each object.
</li>
</ol><br>
--
GitLab