diff --git a/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html b/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html index 1ac0db79bd8579b616ee083eac6f8ae7cf3f127a..d68c42953b5070f8bf91477b1268ad2455d69579 100644 --- a/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html +++ b/openbis_standard_technologies/dist/tarball/installer/data/doc/getting-started-with-openBIS.html @@ -65,7 +65,7 @@ <li>Log in to <a href="https://${HOSTNAME}:8443/openbis">openBIS</a> as admin. </li> - <li>Open the Experiment Browser by clicking on the menu item Browse -> Experiments and open the default experiment. </li> + <li>Open the Collection Browser by clicking on the menu item Browse -> Collections and open the default collection. </li> <li>Click on the Data Set Uploader tab and upload one or several files.</li> @@ -97,7 +97,7 @@ </ol> <div class="text"> - It will create an experiment in project /TEST/PROT which shows a list of proteins. We challenge you to go find it + It will create an collection in project /TEST/PROT which shows a list of proteins. We challenge you to go find it in the running application ! </div> @@ -109,9 +109,9 @@ <li>Log in to <a href="https://${HOSTNAME}:8443/openbis">openBIS</a> as admin. </li> - <li>Open experiment type browser by clicking on menu item Admin -> Types -> Experiment Types.</li> + <li>Open collection type browser by clicking on menu item Admin -> Types -> Collection Types.</li> - <li>Create experiment type SIRNA_HCS.</li> + <li>Create collection type SIRNA_HCS.</li> <li>At the console execute the command: @@ -137,7 +137,7 @@ </div> </li> - <li>A flow cell output from a HiSeq2000 is registered as a data set of the sample 120420_SN792_0109_BC0P8LACXX.<br> + <li>A flow cell output from a HiSeq2000 is registered as a data set of the object 120420_SN792_0109_BC0P8LACXX.<br> Additionally a data set is registered for each flow lane: @@ -159,14 +159,14 @@ </div> </li> - <li> For creating some samples we use the 'Sample Registration'. This is available under the 'Import' menu: <br> - Import -> Sample Registration -> Choose sample type '(multiple)' and browse to the file: + <li> For creating some objects we use the 'Object Registration'. This is available under the 'Import' menu: <br> + Import -> Object Registration -> Choose object type '(multiple)' and browse to the file: <div class="sourcecode"> ${DSS_ROOT_DIR}/examples/illumina-ngs/tsv-files/example_samples_with_parents.tsv</div> Tick 'Update existing'and press the 'Save' button. <br> - This created several samples which can be viewed via Browse -> Samples. You might need to select the Sample Type 'all' <br> + This created several objects which can be viewed via Browse -> Objects. You might need to select the Object Type 'all' <br> and the Space 'all'. <br> - Note that the samples are in a parent-/child relationship indicated by the samples shown in the 'Parents' column. + Note that the objects are in a parent-/child relationship indicated by the objects shown in the 'Parents' column. </li> <br> @@ -183,8 +183,8 @@ touch ${DSS_ROOT_DIR}/register-unaligned/.MARKER_is_finished_120420_SN792_0109_BC0P8LACXX; </div> <br> - The demultiplexed FASTQ files are a data set of the samples BSSE-QGF-LIBRARY-1 and BSSE-QGF-LIBRARY-2. Note that lane 1 and two <br> - contained both samples which results in two FASTQ data sets for each sample. + The demultiplexed FASTQ files are a data set of the objects BSSE-QGF-LIBRARY-1 and BSSE-QGF-LIBRARY-2. Note that lane 1 and two <br> + contained both objects which results in two FASTQ data sets for each object. </li> </ol><br>