From 33c7a21fd05fe523ae1d6e31f6a1bccbf1083fbd Mon Sep 17 00:00:00 2001
From: pkupczyk <pkupczyk>
Date: Wed, 13 Aug 2014 14:10:56 +0000
Subject: [PATCH] SSDM-137 : V3 AS API - fully cover existing functionality
with system tests - create js-test for V3 API
SVN: 32183
---
.../html/openbis-new-api-test.js | 224 +++++++++++++++++-
.../systemtest/api/v3/ExperimentJsonTest.java | 116 ---------
.../createExperiments.json | 37 ---
.../fetchOptions.json | 31 ---
.../listExperiments.json | 12 -
.../v3/ExperimentJsonTestResources/login.json | 9 -
.../searchExperiments.json | 21 --
.../updateExperiments.json | 48 ----
.../systemtest/api/v3/SampleJsonTest.java | 137 -----------
.../createSamples.json | 36 ---
.../SampleJsonTestResources/fetchOptions.json | 51 ----
.../SampleJsonTestResources/listSamples.json | 12 -
.../api/v3/SampleJsonTestResources/login.json | 9 -
.../searchSamples.json | 21 --
.../updateSamples.json | 49 ----
15 files changed, 223 insertions(+), 590 deletions(-)
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTest.java
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/createExperiments.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/fetchOptions.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/listExperiments.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/login.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/searchExperiments.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/updateExperiments.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTest.java
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/createSamples.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/fetchOptions.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/listSamples.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/login.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/searchSamples.json
delete mode 100644 openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/updateSamples.json
diff --git a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-new-api-test/html/openbis-new-api-test.js b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-new-api-test/html/openbis-new-api-test.js
index 315769e9682..29bc8a8052f 100644
--- a/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-new-api-test/html/openbis-new-api-test.js
+++ b/js-test/servers/common/core-plugins/tests/1/as/webapps/openbis-new-api-test/html/openbis-new-api-test.js
@@ -161,6 +161,50 @@ var createExperimentFetchOptions = function() {
}
}
+var createSampleFetchOptions = function() {
+ return {
+ "@type" : "SampleFetchOptions",
+
+ "sampleType" : {
+ "@type" : "SampleTypeFetchOptions"
+ },
+
+ "experiment" : {
+ "@type" : "ExperimentFetchOptions",
+ "project" : {
+ "@type" : "ProjectFetchOptions",
+ "space" : {
+ "@type" : "SpaceFetchOptions"
+ }
+ }
+ },
+
+ "space" : {
+ "@type" : "SpaceFetchOptions"
+ },
+
+ "properties" : {
+ "@type" : "PropertyFetchOptions"
+ },
+
+ "tags" : {
+ "@type" : "TagFetchOptions"
+ },
+
+ "registrator" : {
+ "@type" : "PersonFetchOptions"
+ },
+
+ "modifier" : {
+ "@type" : "PersonFetchOptions"
+ },
+
+ "attachments" : {
+ "@type" : "AttachmentFetchOptions"
+ }
+ }
+}
+
test("listExperiments()", function() {
createFacadeAndLogin(function(facade) {
facade.ajaxRequest({
@@ -186,6 +230,32 @@ test("listExperiments()", function() {
});
});
+test("listSamples()", function() {
+ createFacadeAndLogin(function(facade) {
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "listSamples",
+ "params" : [ facade.sessionToken, [ {
+ "@type" : "SamplePermId",
+ "permId" : "20130412140147735-20"
+ } ], createSampleFetchOptions() ]
+ },
+ success : function(samples) {
+ assertObjectsCount(samples, 1);
+
+ var sample = samples[0];
+ equal(sample.code, "PLATE-1", "Sample code");
+ equal(sample.sampleType.code, "PLATE", "Type code");
+ equal(sample.experiment.code, "EXP-1", "Experiment code");
+ equal(sample.experiment.project.code, "SCREENING-EXAMPLES", "Project code");
+ equal(sample.space.code, "PLATONIC", "Space code");
+ facade.close();
+ }
+ });
+ });
+});
+
test("searchExperiments()", function() {
createFacadeAndLogin(function(facade) {
facade.ajaxRequest({
@@ -217,6 +287,38 @@ test("searchExperiments()", function() {
});
});
+test("searchSamples()", function() {
+ createFacadeAndLogin(function(facade) {
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "searchSamples",
+ "params" : [ facade.sessionToken, {
+ "@type" : "SampleSearchCriterion",
+ "criteria" : [ {
+ "@type" : "CodeSearchCriterion",
+ "fieldValue" : {
+ "@type" : "StringEqualToValue",
+ "value" : "PLATE-1"
+ }
+ } ]
+ }, createSampleFetchOptions() ]
+ },
+ success : function(samples) {
+ assertObjectsCount(samples, 1);
+
+ var sample = samples[0];
+ equal(sample.code, "PLATE-1", "Sample code");
+ equal(sample.sampleType.code, "PLATE", "Type code");
+ equal(sample.experiment.code, "EXP-1", "Experiment code");
+ equal(sample.experiment.project.code, "SCREENING-EXAMPLES", "Project code");
+ equal(sample.space.code, "PLATONIC", "Space code");
+ facade.close();
+ }
+ });
+ });
+});
+
test("createExperiments()", function() {
createFacadeAndLogin(function(facade) {
var code = "CREATE_JSON_EXPERIMENT_" + (new Date().getTime());
@@ -271,6 +373,58 @@ test("createExperiments()", function() {
});
});
+test("createSamples()", function() {
+ createFacadeAndLogin(function(facade) {
+ var code = "CREATE_JSON_SAMPLE_" + (new Date().getTime());
+
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "createSamples",
+ "params" : [ facade.sessionToken, [ {
+ "@type" : "SampleCreation",
+
+ "typeId" : {
+ "@type" : "EntityTypePermId",
+ "permId" : "UNKNOWN"
+ },
+
+ "code" : code,
+
+ "spaceId" : {
+ "@type" : "SpacePermId",
+ "permId" : "TEST"
+ },
+
+ "tagIds" : [ {
+ "@type" : "TagNameId",
+ "name" : "CREATE_JSON_TAG"
+ } ]
+
+ } ] ]
+ },
+ success : function(samplePermIds) {
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "listSamples",
+ "params" : [ facade.sessionToken, [ samplePermIds[0] ], createSampleFetchOptions() ]
+ },
+ success : function(samples) {
+ assertObjectsCount(samples, 1);
+
+ var sample = samples[0];
+ equal(sample.code, code, "Sample code");
+ equal(sample.sampleType.code, "UNKNOWN", "Type code");
+ equal(sample.space.code, "TEST", "Space code");
+ facade.close();
+ }
+ });
+ }
+ });
+ });
+});
+
test("updateExperiments()", function() {
createFacadeAndLogin(function(facade) {
var code = "UPDATE_JSON_EXPERIMENT_" + (new Date().getTime());
@@ -313,7 +467,7 @@ test("updateExperiments()", function() {
} ] ]
},
- success : function(experiments) {
+ success : function() {
facade.ajaxRequest({
url : testApiUrl,
@@ -338,3 +492,71 @@ test("updateExperiments()", function() {
});
});
});
+
+test("updateSamples()", function() {
+ createFacadeAndLogin(function(facade) {
+ var code = "UPDATE_JSON_SAMPLE_" + (new Date().getTime());
+
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "createSamples",
+ "params" : [ facade.sessionToken, [ {
+ "@type" : "SampleCreation",
+
+ "typeId" : {
+ "@type" : "EntityTypePermId",
+ "permId" : "UNKNOWN"
+ },
+
+ "code" : code,
+
+ "spaceId" : {
+ "@type" : "SpacePermId",
+ "permId" : "PLATONIC"
+ }
+
+ } ] ]
+ },
+ success : function(samplePermIds) {
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "updateSamples",
+ "params" : [ facade.sessionToken, [ {
+ "@type" : "SampleUpdate",
+
+ "sampleId" : samplePermIds[0],
+
+ "spaceId" : {
+ "@type" : "SpacePermId",
+ "permId" : "TEST"
+ }
+
+ } ] ]
+ },
+ success : function() {
+
+ facade.ajaxRequest({
+ url : testApiUrl,
+ data : {
+ "method" : "listSamples",
+ "params" : [ facade.sessionToken, [ samplePermIds[0] ], createSampleFetchOptions() ]
+ },
+ success : function(samples) {
+ assertObjectsCount(samples, 1);
+
+ var sample = samples[0];
+ equal(sample.code, code, "Sample code");
+ equal(sample.sampleType.code, "UNKNOWN", "Type code");
+ equal(sample.space.code, "TEST", "Space code");
+ facade.close();
+ }
+ });
+ }
+ });
+ }
+ });
+ });
+});
+
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTest.java
deleted file mode 100644
index 392ca08c6ee..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTest.java
+++ /dev/null
@@ -1,116 +0,0 @@
-/*
- * Copyright 2014 ETH Zuerich, CISD
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-package ch.systemsx.cisd.openbis.systemtest.api.v3;
-
-import static junit.framework.Assert.assertEquals;
-import static junit.framework.Assert.assertFalse;
-
-import org.testng.annotations.Test;
-
-import com.fasterxml.jackson.databind.JsonNode;
-
-/**
- * @author pkupczyk
- */
-@Test(enabled = false)
-public class ExperimentJsonTest extends AbstractJsonTest
-{
-
- @Test(enabled = false)
- public void testListExperiments() throws Exception
- {
- String sessionToken = login();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- JsonNode response = sendRequest("listExperiments.json", sessionToken, "200811050951882-1028", fetchOptions);
-
- assertResultCount(response, 1);
-
- JsonNode experimentNode = response.get("result").get(0);
- assertEquals("EXP1", experimentNode.get("code").asText());
- assertEquals("/CISD/NEMO/EXP1", experimentNode.get("identifier").get("identifier").asText());
- assertEquals("200811050951882-1028", experimentNode.get("permId").get("permId").asText());
- assertEquals("SIRNA_HCS", experimentNode.get("type").get("code").asText());
- assertEquals("NEMO", experimentNode.get("project").get("code").asText());
- assertEquals("A simple experiment", experimentNode.get("properties").get("DESCRIPTION").asText());
- assertEquals("test", experimentNode.get("registrator").get("userId").asText());
- JsonNode attachments = experimentNode.get("attachments");
- assertChildrenCount(attachments, 1);
- assertEquals("exampleExperiments.txt", attachments.get(0).get("fileName").asText());
- assertFalse(experimentNode.get("registrationDate").isNull());
- assertFalse(experimentNode.get("modificationDate").isNull());
- }
-
- @Test(enabled = false)
- public void testCreateExperiments() throws Exception
- {
- String sessionToken = login();
-
- JsonNode createResponse = sendRequest("createExperiments.json", sessionToken, "NEW_JSON_EXPERIMENT");
-
- assertResultCount(createResponse, 1);
-
- String experimentPermId = createResponse.get("result").get(0).get("permId").asText();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- JsonNode listResponse = sendRequest("listExperiments.json", sessionToken, experimentPermId, fetchOptions);
-
- assertResultCount(listResponse, 1);
-
- JsonNode experimentNode = listResponse.get("result").get(0);
- assertEquals(experimentPermId, experimentNode.get("permId").get("permId").asText());
- assertEquals("NEW_JSON_EXPERIMENT", experimentNode.get("code").asText());
- assertEquals("/CISD/NEMO/NEW_JSON_EXPERIMENT", experimentNode.get("identifier").get("identifier").asText());
- assertEquals("COMPOUND_HCS", experimentNode.get("type").get("code").asText());
- assertEquals("NEMO", experimentNode.get("project").get("code").asText());
- assertEquals("hello", experimentNode.get("properties").get("DESCRIPTION").asText());
- JsonNode tagsNode = experimentNode.get("tags");
- assertChildrenCount(tagsNode, 1);
- assertEquals("NEW_JSON_TAG", tagsNode.get(0).get("name").asText());
- assertEquals("test", experimentNode.get("registrator").get("userId").asText());
- assertFalse(experimentNode.get("modifier").isNull());
- assertFalse(experimentNode.get("registrationDate").isNull());
- assertFalse(experimentNode.get("modificationDate").isNull());
- }
-
- @Test(enabled = false)
- public void testUpdateExperiments() throws Exception
- {
- // updateExperiments method is not yet implemented in the new API
- }
-
- @Test(enabled = false)
- public void testSearchExperiments() throws Exception
- {
- String sessionToken = login();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- JsonNode response = sendRequest("searchExperiments.json", sessionToken, "EXP1", fetchOptions);
-
- assertResultCount(response, 1);
-
- JsonNode experimentNode = response.get("result").get(0);
- assertEquals("EXP1", experimentNode.get("code").asText());
- assertEquals("/CISD/NEMO/EXP1", experimentNode.get("identifier").get("identifier").asText());
- assertEquals("200811050951882-1028", experimentNode.get("permId").get("permId").asText());
- assertEquals("SIRNA_HCS", experimentNode.get("type").get("code").asText());
- assertEquals("NEMO", experimentNode.get("project").get("code").asText());
- assertEquals("A simple experiment", experimentNode.get("properties").get("DESCRIPTION").asText());
- assertEquals("test_role", experimentNode.get("modifier").get("userId").asText());
- }
-
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/createExperiments.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/createExperiments.json
deleted file mode 100644
index 59d54f75f8e..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/createExperiments.json
+++ /dev/null
@@ -1,37 +0,0 @@
-{
- "method":"createExperiments",
- "params":[
- "%s",
- [
- {
- "@type" : "ExperimentCreation",
-
- "typeId" : {
- "@type" : "EntityTypePermId",
- "permId" : "COMPOUND_HCS"
-
- },
-
- "code" : "%s",
-
- "projectId" : {
- "@type" : "ProjectIdentifier",
- "identifier" : "/CISD/NEMO"
- },
-
- "tagIds" : [
- {
- "@type" : "TagNameId",
- "name" : "NEW_JSON_TAG"
- }
- ],
-
- "properties" : {
- "DESCRIPTION" : "hello"
- }
- }
- ]
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/fetchOptions.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/fetchOptions.json
deleted file mode 100644
index 1b68aa6099c..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/fetchOptions.json
+++ /dev/null
@@ -1,31 +0,0 @@
-{
- "@type" : "ExperimentFetchOptions",
-
- "type" : {
- "@type" : "ExperimentTypeFetchOptions"
- },
-
- "project" : {
- "@type" : "ProjectFetchOptions"
- },
-
- "properties" : {
- "@type" : "PropertyFetchOptions"
- },
-
- "tags" : {
- "@type" : "TagFetchOptions"
- },
-
- "registrator" : {
- "@type" : "PersonFetchOptions"
- },
-
- "modifier" : {
- "@type" : "PersonFetchOptions"
- },
-
- "attachments" : {
- "@type" : "AttachmentFetchOptions"
- }
-}
\ No newline at end of file
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/listExperiments.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/listExperiments.json
deleted file mode 100644
index 5ffca2172f3..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/listExperiments.json
+++ /dev/null
@@ -1,12 +0,0 @@
-{
- "method":"listExperiments",
- "params":[
- "%s",
- [
- {"@type" : "ExperimentPermId", "permId" : "%s"}
- ],
- %s
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/login.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/login.json
deleted file mode 100644
index 89d28a67819..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/login.json
+++ /dev/null
@@ -1,9 +0,0 @@
-{
- "method" : "login",
- "params" : [
- "test",
- "password"
- ],
- "id" : "1",
- "jsonrpc" : "2.0"
-}
\ No newline at end of file
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/searchExperiments.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/searchExperiments.json
deleted file mode 100644
index 24ce669bd28..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/searchExperiments.json
+++ /dev/null
@@ -1,21 +0,0 @@
-{
- "method":"searchExperiments",
- "params":[
- "%s",
- {
- "@type" : "ExperimentSearchCriterion",
- "criteria" : [
- {
- "@type" : "CodeSearchCriterion",
- "fieldValue" : {
- "@type" : "StringEqualToValue",
- "value" : "%s"
- }
- }
- ]
- },
- %s
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/updateExperiments.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/updateExperiments.json
deleted file mode 100644
index c9a107b09f8..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/ExperimentJsonTestResources/updateExperiments.json
+++ /dev/null
@@ -1,48 +0,0 @@
-{
- "method":"updateExperiments",
- "params":[
- "%s",
- [
- {
- "@type" : "ExperimentUpdate",
-
- "experimentId" : {
- "@type" : "ExperimentIdentifer",
- "identifier" : "%s"
- },
-
- "projectId" : {
- "@type" : "ProjectIdentifier",
- "identifier" : "/CISD/NOE"
- },
-
- "tagsActions" : [
- {
- "@type" : "AddAction",
- "ids" : [
- {
- "@type" : "TagNameId",
- "name" : "NEW_JSON_TAG_2"
- }
- ]
- },
- {
- "@type" : "RemoveAction",
- "ids" : [
- {
- "@type" : "TagNameId",
- "name" : "NEW_JSON_TAG"
- }
- ]
- }
- ],
-
- "properties" : {
- "DESCRIPTION" : "hello 2"
- }
- }
- ]
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTest.java b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTest.java
deleted file mode 100644
index 53ae8ce5e32..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTest.java
+++ /dev/null
@@ -1,137 +0,0 @@
-/*
- * Copyright 2014 ETH Zuerich, CISD
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-package ch.systemsx.cisd.openbis.systemtest.api.v3;
-
-import static junit.framework.Assert.assertEquals;
-import static junit.framework.Assert.assertFalse;
-import static junit.framework.Assert.assertTrue;
-
-import org.testng.annotations.Test;
-
-import com.fasterxml.jackson.databind.JsonNode;
-
-/**
- * @author pkupczyk
- */
-@Test(enabled = false)
-public class SampleJsonTest extends AbstractJsonTest
-{
-
- @Test(enabled = false)
- public void testListSamples() throws Exception
- {
- String sessionToken = login();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- JsonNode response = sendRequest("listSamples.json", sessionToken, "200811050919915-8", fetchOptions);
-
- assertResultCount(response, 1);
-
- JsonNode sampleNode = response.get("result").get(0);
- assertEquals("CL1", sampleNode.get("code").asText());
- assertEquals("CONTROL_LAYOUT", sampleNode.get("sampleType").get("code").asText());
- assertEquals("CISD", sampleNode.get("space").get("code").asText());
- assertTrue(sampleNode.get("experiment").isNull());
- assertTrue(sampleNode.get("container").isNull());
- assertEquals("384_WELLS_16X24", sampleNode.get("properties").get("$PLATE_GEOMETRY").asText());
- assertEquals("test control layout", sampleNode.get("properties").get("DESCRIPTION").asText());
- }
-
- @Test(enabled = false)
- public void testCreateSamples() throws Exception
- {
- String sessionToken = login();
-
- JsonNode createResponse = sendRequest("createSamples.json", sessionToken, "NEW_JSON_SAMPLE");
-
- assertResultCount(createResponse, 1);
-
- String samplePermId = createResponse.get("result").get(0).get("permId").asText();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- JsonNode listResponse = sendRequest("listSamples.json", sessionToken, samplePermId, fetchOptions);
-
- assertResultCount(listResponse, 1);
-
- JsonNode sampleNode = listResponse.get("result").get(0);
- assertEquals(samplePermId, sampleNode.get("permId").get("permId").asText());
- assertEquals("NEW_JSON_SAMPLE", sampleNode.get("code").asText());
- assertEquals("CELL_PLATE", sampleNode.get("sampleType").get("code").asText());
- assertEquals("CISD", sampleNode.get("space").get("code").asText());
- assertEquals("EXP10", sampleNode.get("experiment").get("code").asText());
- assertEquals("hello", sampleNode.get("properties").get("COMMENT").asText());
- }
-
- @Test(enabled = false)
- public void testUpdateSamples() throws Exception
- {
- String sessionToken = login();
-
- JsonNode createResponse;
-
- createResponse = sendRequest("createSamples.json", sessionToken, "JSON_SAMPLE_TO_UPDATE_CONTAINED");
- assertResultCount(createResponse, 1);
-
- createResponse = sendRequest("createSamples.json", sessionToken, "JSON_SAMPLE_TO_UPDATE_CONTAINER");
- assertResultCount(createResponse, 1);
-
- createResponse = sendRequest("createSamples.json", sessionToken, "JSON_SAMPLE_TO_UPDATE");
- assertResultCount(createResponse, 1);
-
- String samplePermId = createResponse.get("result").get(0).get("permId").asText();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- sendRequest("updateSamples.json", sessionToken, "/CISD/JSON_SAMPLE_TO_UPDATE");
-
- JsonNode listResponse = sendRequest("listSamples.json", sessionToken, samplePermId, fetchOptions);
-
- assertResultCount(listResponse, 1);
-
- JsonNode sampleNode = listResponse.get("result").get(0);
- assertEquals("JSON_SAMPLE_TO_UPDATE", sampleNode.get("code").asText());
- assertEquals("CELL_PLATE", sampleNode.get("sampleType").get("code").asText());
- assertEquals("CISD", sampleNode.get("space").get("code").asText());
- assertEquals("EXP11", sampleNode.get("experiment").get("code").asText());
- assertEquals("JSON_SAMPLE_TO_UPDATE_CONTAINER", sampleNode.get("container").get("code").asText());
-
- JsonNode containedNode = sampleNode.get("contained");
- assertTrue(containedNode.has(0));
- assertFalse(containedNode.has(1));
- assertEquals("JSON_SAMPLE_TO_UPDATE_CONTAINED", containedNode.get(0).get("code").asText());
- assertEquals("hello 2", sampleNode.get("properties").get("COMMENT").asText());
- }
-
- @Test(enabled = false)
- public void testSearchSamples() throws Exception
- {
- String sessionToken = login();
- String fetchOptions = getFileContent("fetchOptions.json");
-
- JsonNode response = sendRequest("searchSamples.json", sessionToken, "PLATE_WELLSEARCH", fetchOptions);
-
- assertResultCount(response, 1);
-
- JsonNode sampleNode = response.get("result").get(0);
- assertEquals("PLATE_WELLSEARCH", sampleNode.get("code").asText());
- assertEquals("CELL_PLATE", sampleNode.get("sampleType").get("code").asText());
- assertEquals("CISD", sampleNode.get("space").get("code").asText());
- assertEquals("EXP-WELLS", sampleNode.get("experiment").get("code").asText());
- assertTrue(sampleNode.get("container").isNull());
- assertEquals("{}", sampleNode.get("properties").toString());
- }
-
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/createSamples.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/createSamples.json
deleted file mode 100644
index f66f2e1558c..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/createSamples.json
+++ /dev/null
@@ -1,36 +0,0 @@
-{
- "method":"createSamples",
- "params":[
- "%s",
- [
- {
- "@type" : "SampleCreation",
-
- "typeId" : {
- "@type" : "EntityTypePermId",
- "permId" : "CELL_PLATE"
-
- },
-
- "code" : "%s",
-
- "spaceId" : {
- "@type" : "SpacePermId",
- "permId" : "CISD"
- },
-
- "experimentId" : {
- "@type" : "ExperimentPermId",
- "permId" : "200811050952663-1029"
- },
-
- "properties" : {
- "COMMENT" : "hello"
- }
-
- }
- ]
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/fetchOptions.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/fetchOptions.json
deleted file mode 100644
index 7a373938470..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/fetchOptions.json
+++ /dev/null
@@ -1,51 +0,0 @@
-{
- "@type" : "SampleFetchOptions",
-
- "sampleType" : {
- "@type" : "SampleTypeFetchOptions"
- },
-
- "space" : {
- "@type" : "SpaceFetchOptions"
- },
-
- "experiment" : {
- "@type" : "ExperimentFetchOptions"
- },
-
- "properties" : {
- "@type" : "PropertyFetchOptions"
- },
-
- "parents" : {
- "@type" : "SampleFetchOptions"
- },
-
- "children" : {
- "@type" : "SampleFetchOptions"
- },
-
- "container" : {
- "@type" : "SampleFetchOptions"
- },
-
- "contained" : {
- "@type" : "SampleFetchOptions"
- },
-
- "tags" : {
- "@type" : "TagFetchOptions"
- },
-
- "registrator" : {
- "@type" : "PersonFetchOptions"
- },
-
- "modifier" : {
- "@type" : "PersonFetchOptions"
- },
-
- "attachments" : {
- "@type" : "AttachmentFetchOptions"
- }
-}
\ No newline at end of file
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/listSamples.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/listSamples.json
deleted file mode 100644
index 8a51351db58..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/listSamples.json
+++ /dev/null
@@ -1,12 +0,0 @@
-{
- "method":"listSamples",
- "params":[
- "%s",
- [
- {"@type" : "SamplePermId", "permId" : "%s"}
- ],
- %s
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/login.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/login.json
deleted file mode 100644
index 89d28a67819..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/login.json
+++ /dev/null
@@ -1,9 +0,0 @@
-{
- "method" : "login",
- "params" : [
- "test",
- "password"
- ],
- "id" : "1",
- "jsonrpc" : "2.0"
-}
\ No newline at end of file
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/searchSamples.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/searchSamples.json
deleted file mode 100644
index 13a0f8854c5..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/searchSamples.json
+++ /dev/null
@@ -1,21 +0,0 @@
-{
- "method":"searchSamples",
- "params":[
- "%s",
- {
- "@type" : "SampleSearchCriterion",
- "criteria" : [
- {
- "@type" : "CodeSearchCriterion",
- "fieldValue" : {
- "@type" : "StringEqualToValue",
- "value" : "%s"
- }
- }
- ]
- },
- %s
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
diff --git a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/updateSamples.json b/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/updateSamples.json
deleted file mode 100644
index 67b87c92be2..00000000000
--- a/openbis/sourceTest/java/ch/systemsx/cisd/openbis/systemtest/api/v3/SampleJsonTestResources/updateSamples.json
+++ /dev/null
@@ -1,49 +0,0 @@
-{
- "method":"updateSamples",
- "params":[
- "%s",
- [
- {
- "@type" : "SampleUpdate",
-
- "sampleId" : {
- "@type" : "SampleIdentifier",
- "identifier" : "%s"
- },
-
- "spaceId" : {
- "@type" : "SpacePermId",
- "permId" : "CISD"
- },
-
- "experimentId" : {
- "@type" : "ExperimentPermId",
- "permId" : "200811050952663-1030"
- },
-
- "containerId" : {
- "@type" : "SampleIdentifier",
- "identifier" : "/CISD/JSON_SAMPLE_TO_UPDATE_CONTAINER"
- },
-
- "containedActions" : [
- {
- "@type" : "AddAction",
- "ids" : [
- {
- "@type" : "SampleIdentifier",
- "identifier" : "/CISD/JSON_SAMPLE_TO_UPDATE_CONTAINED"
- }
- ]
- }
- ],
-
- "properties" : {
- "COMMENT" : "hello 2"
- }
- }
- ]
- ],
- "id":"1",
- "jsonrpc":"2.0"
-}
--
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