From 3179e533a566329ee8c0e8ce8ad38b84ebbb4132 Mon Sep 17 00:00:00 2001
From: brinn <brinn>
Date: Thu, 17 Dec 2009 14:14:47 +0000
Subject: [PATCH] change: remove the external sample name from the tsv file
names to make opening the files easier from a Perl / Bash script
SVN: 13994
---
.../java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java | 10 +---------
1 file changed, 1 insertion(+), 9 deletions(-)
diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java
index 695c247ffdc..e7afa3d671a 100644
--- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java
+++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java
@@ -255,7 +255,6 @@ class FlowLaneFeeder extends AbstractPostRegistrationDataSetHandlerForFileBasedU
SampleIdentifier identifier = SampleIdentifierFactory.parse(flowLaneSample.getIdentifier());
IEntityProperty[] properties = service.getPropertiesOfTopSampleRegisteredFor(identifier);
File dropBox = null;
- String externalSampleName = null;
for (IEntityProperty property : properties)
{
PropertyType propertyType = property.getPropertyType();
@@ -266,10 +265,6 @@ class FlowLaneFeeder extends AbstractPostRegistrationDataSetHandlerForFileBasedU
{
dropBox = transferDropBoxes.get(value);
}
- if (code.equals(EXTERNAL_SAMPLE_NAME_KEY))
- {
- externalSampleName = value;
- }
}
if (srfInfo.isEmpty() == false)
{
@@ -279,10 +274,7 @@ class FlowLaneFeeder extends AbstractPostRegistrationDataSetHandlerForFileBasedU
builder.append(line).append('\n');
}
}
- String metaFileName =
- flowLaneSample.getCode()
- + (externalSampleName == null ? "" : "_" + externalSampleName)
- + META_DATA_FILE_TYPE;
+ String metaFileName = flowLaneSample.getCode() + META_DATA_FILE_TYPE;
metaFileName = asFileName(metaFileName);
FileUtilities.writeToFile(new File(flowLaneDataSet, metaFileName), builder.toString());
if (dropBox != null)
--
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