diff --git a/pybis/src/python/notebooks/openBIS+masterdata.ipynb b/pybis/src/python/notebooks/openBIS+masterdata.ipynb
index 36a36785454d6aaaeda89ca06fbce0a01eb0d7cf..1bf6590bbab4d56664009b097afb87a21cd8fbec 100644
--- a/pybis/src/python/notebooks/openBIS+masterdata.ipynb
+++ b/pybis/src/python/notebooks/openBIS+masterdata.ipynb
@@ -24,9 +24,7 @@
{
"cell_type": "code",
"execution_count": 1,
- "metadata": {
- "collapsed": false
- },
+ "metadata": {},
"outputs": [
{
"name": "stdout",
@@ -38,7 +36,7 @@
{
"data": {
"text/plain": [
- "'vermeul-170330163713343x3530B1ACB127D9BEC97D53C4A9FF39A0'"
+ "'vermeul-181204020656668x88163826E3FCC426CE7BEFBECCB33B36'"
]
},
"execution_count": 1,
@@ -66,14 +64,25 @@
{
"cell_type": "code",
"execution_count": 2,
- "metadata": {
- "collapsed": false
- },
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -132,14 +141,25 @@
{
"cell_type": "code",
"execution_count": 3,
- "metadata": {
- "collapsed": false
- },
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -152,15 +172,15 @@
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
- " <td>DEFAULT_EXPERIMENT</td>\n",
- " <td>Default Experiment</td>\n",
- " <td>2016-06-24 10:48:02</td>\n",
+ " <td>STOCK</td>\n",
+ " <td>Folder used to organize purchases related items</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
- " <td>MATERIALS</td>\n",
- " <td>Folder used to organize samples in the Invento...</td>\n",
- " <td>2016-06-24 10:48:02</td>\n",
+ " <td>COLLECTION</td>\n",
+ " <td>Folder used to organize collections everywhere</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
@@ -170,16 +190,28 @@
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
- " <td>BOARDS</td>\n",
- " <td>Folder used to organize boards</td>\n",
+ " <td>MATERIALS</td>\n",
+ " <td>Folder used to organize samples in the Invento...</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
+ " <td>DEFAULT_EXPERIMENT</td>\n",
+ " <td>Default Experiment</td>\n",
+ " <td>2016-06-24 10:48:02</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>5</th>\n",
" <td>UNKNOWN</td>\n",
" <td>Unknown</td>\n",
" <td>2016-06-24 10:47:01</td>\n",
" </tr>\n",
+ " <tr>\n",
+ " <th>6</th>\n",
+ " <td>BOARDS</td>\n",
+ " <td>Folder used to organize boards</td>\n",
+ " <td>2016-06-24 10:48:02</td>\n",
+ " </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
@@ -187,11 +219,13 @@
"text/plain": [
" code description modificationDate\n",
"-- ------------------ ---------------------------------------------------------- -------------------\n",
- " 0 DEFAULT_EXPERIMENT Default Experiment 2016-06-24 10:48:02\n",
- " 1 MATERIALS Folder used to organize samples in the Inventory/MATERIALS 2016-06-24 10:48:02\n",
+ " 0 STOCK Folder used to organize purchases related items 2017-09-20 14:08:21\n",
+ " 1 COLLECTION Folder used to organize collections everywhere 2017-09-20 14:08:21\n",
" 2 METHODS Folder used to organize samples in the Inventory/METHODS 2016-06-24 10:48:02\n",
- " 3 BOARDS Folder used to organize boards 2016-06-24 10:48:02\n",
- " 4 UNKNOWN Unknown 2016-06-24 10:47:01"
+ " 3 MATERIALS Folder used to organize samples in the Inventory/MATERIALS 2016-06-24 10:48:02\n",
+ " 4 DEFAULT_EXPERIMENT Default Experiment 2016-06-24 10:48:02\n",
+ " 5 UNKNOWN Unknown 2016-06-24 10:47:01\n",
+ " 6 BOARDS Folder used to organize boards 2016-06-24 10:48:02"
]
},
"execution_count": 3,
@@ -206,14 +240,25 @@
{
"cell_type": "code",
"execution_count": 4,
- "metadata": {
- "collapsed": false
- },
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -346,6 +391,55 @@
" </tr>\n",
" <tr>\n",
" <th>17</th>\n",
+ " <td>GENERAL_ELN_SETTINGS</td>\n",
+ " <td>Used to store the settings of the ELN application</td>\n",
+ " <td>GEN</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>18</th>\n",
+ " <td>STORAGE</td>\n",
+ " <td></td>\n",
+ " <td>STO</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>19</th>\n",
+ " <td>STORAGE_POSITION</td>\n",
+ " <td></td>\n",
+ " <td>STO</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>20</th>\n",
+ " <td>SUPPLIER</td>\n",
+ " <td></td>\n",
+ " <td>SUP</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>21</th>\n",
+ " <td>PRODUCT</td>\n",
+ " <td></td>\n",
+ " <td>PRO</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>22</th>\n",
+ " <td>REQUEST</td>\n",
+ " <td></td>\n",
+ " <td>REQ</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>23</th>\n",
+ " <td>ORDER</td>\n",
+ " <td></td>\n",
+ " <td>ORD</td>\n",
+ " <td>2017-09-20 14:08:21</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>24</th>\n",
" <td>UNKNOWN</td>\n",
" <td>Unknown</td>\n",
" <td>S</td>\n",
@@ -356,26 +450,33 @@
"</div>"
],
"text/plain": [
- " code description generatedCodePrefix modificationDate\n",
- "-- ------------------------- ------------- --------------------- -------------------\n",
- " 0 ANTIBODY ANT 2016-06-24 10:48:02\n",
- " 1 CHEMICAL CHE 2016-06-24 10:48:02\n",
- " 2 ENZYME ENZ 2016-06-24 10:48:02\n",
- " 3 MEDIA MED 2016-06-24 10:48:02\n",
- " 4 SOLUTION_BUFFER SOL 2016-06-24 10:48:02\n",
- " 5 OLIGO OLI 2016-06-24 10:48:02\n",
- " 6 RNA RNA 2016-06-24 10:48:02\n",
- " 7 PLASMID PLA 2016-06-24 10:48:02\n",
- " 8 BACTERIA BAC 2016-06-24 10:48:02\n",
- " 9 YEAST YEA 2016-06-24 10:48:02\n",
- "10 CELL_LINE CEL 2016-06-24 10:48:02\n",
- "11 FLY FLY 2016-06-24 10:48:02\n",
- "12 EXPERIMENTAL_STEP EXP 2016-06-24 10:48:02\n",
- "13 GENERAL_PROTOCOL GEN 2016-06-24 10:48:02\n",
- "14 PCR_PROTOCOL PCR 2016-06-24 10:48:02\n",
- "15 WESTERN_BLOTTING_PROTOCOL WES 2016-06-24 10:48:02\n",
- "16 DRAWING_BOARD DRA 2016-06-24 10:48:02\n",
- "17 UNKNOWN Unknown S 2016-06-24 10:47:01"
+ " code description generatedCodePrefix modificationDate\n",
+ "-- ------------------------- ------------------------------------------------- --------------------- -------------------\n",
+ " 0 ANTIBODY ANT 2016-06-24 10:48:02\n",
+ " 1 CHEMICAL CHE 2016-06-24 10:48:02\n",
+ " 2 ENZYME ENZ 2016-06-24 10:48:02\n",
+ " 3 MEDIA MED 2016-06-24 10:48:02\n",
+ " 4 SOLUTION_BUFFER SOL 2016-06-24 10:48:02\n",
+ " 5 OLIGO OLI 2016-06-24 10:48:02\n",
+ " 6 RNA RNA 2016-06-24 10:48:02\n",
+ " 7 PLASMID PLA 2016-06-24 10:48:02\n",
+ " 8 BACTERIA BAC 2016-06-24 10:48:02\n",
+ " 9 YEAST YEA 2016-06-24 10:48:02\n",
+ "10 CELL_LINE CEL 2016-06-24 10:48:02\n",
+ "11 FLY FLY 2016-06-24 10:48:02\n",
+ "12 EXPERIMENTAL_STEP EXP 2016-06-24 10:48:02\n",
+ "13 GENERAL_PROTOCOL GEN 2016-06-24 10:48:02\n",
+ "14 PCR_PROTOCOL PCR 2016-06-24 10:48:02\n",
+ "15 WESTERN_BLOTTING_PROTOCOL WES 2016-06-24 10:48:02\n",
+ "16 DRAWING_BOARD DRA 2016-06-24 10:48:02\n",
+ "17 GENERAL_ELN_SETTINGS Used to store the settings of the ELN application GEN 2017-09-20 14:08:21\n",
+ "18 STORAGE STO 2017-09-20 14:08:21\n",
+ "19 STORAGE_POSITION STO 2017-09-20 14:08:21\n",
+ "20 SUPPLIER SUP 2017-09-20 14:08:21\n",
+ "21 PRODUCT PRO 2017-09-20 14:08:21\n",
+ "22 REQUEST REQ 2017-09-20 14:08:21\n",
+ "23 ORDER ORD 2017-09-20 14:08:21\n",
+ "24 UNKNOWN Unknown S 2016-06-24 10:47:01"
]
},
"execution_count": 4,
@@ -390,14 +491,25 @@
{
"cell_type": "code",
"execution_count": 5,
- "metadata": {
- "collapsed": false
- },
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -411,17 +523,17 @@
" <tr>\n",
" <th>0</th>\n",
" <td>MY_VERY_EXCITING_MATERIAL</td>\n",
- " <td>looks like dirt and probably is dirt</td>\n",
- " <td>2016-09-24 00:46:19</td>\n",
+ " <td>so öppis kännsch no nöd!</td>\n",
+ " <td>2018-12-04 00:54:52</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"</div>"
],
"text/plain": [
- " code description modificationDate\n",
- "-- ------------------------- ------------------------------------ -------------------\n",
- " 0 MY_VERY_EXCITING_MATERIAL looks like dirt and probably is dirt 2016-09-24 00:46:19"
+ " code description modificationDate\n",
+ "-- ------------------------- ------------------------ -------------------\n",
+ " 0 MY_VERY_EXCITING_MATERIAL so öppis kännsch no nöd! 2018-12-04 00:54:52"
]
},
"execution_count": 5,
@@ -436,21 +548,90 @@
{
"cell_type": "code",
"execution_count": 6,
- "metadata": {
- "collapsed": false
- },
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "<p>MaterialType: <b>MY_VERY_EXCITING_MATERIAL</b>\n",
+ " <table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th>attribute</th>\n",
+ " <th>value</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr> <td>code</td> <td>MY_VERY_EXCITING_MATERIAL</td> </tr><tr> <td>description</td> <td>so öppis kännsch no nöd!</td> </tr><tr> <td>autoGeneratedCode</td> <td></td> </tr><tr> <td>subcodeUnique</td> <td></td> </tr><tr> <td>generatedCodePrefix</td> <td></td> </tr><tr> <td>listable</td> <td></td> </tr><tr> <td>showContainer</td> <td></td> </tr><tr> <td>showParents</td> <td></td> </tr><tr> <td>showParentMetadata</td> <td></td> </tr>\n",
+ " </tbody>\n",
+ " </table>\n",
+ " \n",
+ " <p><b>Property Assignments</b>\n",
+ "<table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th>property</th>\n",
+ " <th>label</th>\n",
+ " <th>description</th>\n",
+ " <th>dataType</th>\n",
+ " <th>mandatory</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr> <th>aa_property_type</th> <td>aa property type</td> <td>find out how propertiy types and vocabulary are related...</td> <td>CONTROLLEDVOCABULARY</td> <td>False</td> </tr>\n",
+ " </tbody>\n",
+ " </table>\n",
+ " "
+ ],
+ "text/plain": [
+ "\n",
+ "MaterialType: MY_VERY_EXCITING_MATERIAL\n",
+ "description: so öppis kännsch no nöd!\n",
+ "\n",
+ " code label description dataType mandatory \n",
+ "=====================================================================================================================================\n",
+ "aa_property_type aa property type find out how propertiy types CONTROLLEDVOCABULARY 0 \n",
+ " and vocabulary are \n",
+ " related... "
+ ]
+ },
+ "execution_count": 6,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "o.get_material_types(type='MY_VERY_EXCITING_MATERIAL')"
+ ]
+ },
+ {
+ "cell_type": "code",
+ "execution_count": 7,
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
"<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>code</th>\n",
" <th>description</th>\n",
- " <th>kind</th>\n",
" <th>modificationDate</th>\n",
" </tr>\n",
" </thead>\n",
@@ -459,77 +640,66 @@
" <th>0</th>\n",
" <td>ELN_PREVIEW</td>\n",
" <td>ELN Preview image</td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>SEQ_FILE</td>\n",
" <td></td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
" <td>RAW_DATA</td>\n",
" <td></td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
" <td>ANALYZED_DATA</td>\n",
" <td></td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
" <td>ATTACHMENT</td>\n",
" <td></td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
" <td>DRAWING_BOARD</td>\n",
" <td></td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:48:02</td>\n",
" </tr>\n",
" <tr>\n",
" <th>6</th>\n",
" <td>JUPYTER_CONTAINER</td>\n",
" <td>Jupyter Analysis Results</td>\n",
- " <td>CONTAINER</td>\n",
" <td>2016-06-29 15:29:06</td>\n",
" </tr>\n",
" <tr>\n",
" <th>7</th>\n",
" <td>LINKED-TYPE</td>\n",
" <td>for use with git</td>\n",
- " <td>LINK</td>\n",
" <td>2017-03-02 23:12:48</td>\n",
" </tr>\n",
" <tr>\n",
" <th>8</th>\n",
" <td>JUPYTER_NOTEBOOK</td>\n",
" <td>Analysis Notebook Files</td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-29 15:29:07</td>\n",
" </tr>\n",
" <tr>\n",
" <th>9</th>\n",
" <td>UNKNOWN</td>\n",
" <td>Unknown</td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-24 10:47:01</td>\n",
" </tr>\n",
" <tr>\n",
" <th>10</th>\n",
" <td>JUPYTER_RESULT</td>\n",
" <td>Analysis Results Files</td>\n",
- " <td>PHYSICAL</td>\n",
" <td>2016-06-29 15:29:06</td>\n",
" </tr>\n",
" </tbody>\n",
@@ -537,22 +707,22 @@
"</div>"
],
"text/plain": [
- " code description kind modificationDate\n",
- "-- ----------------- ------------------------ --------- -------------------\n",
- " 0 ELN_PREVIEW ELN Preview image PHYSICAL 2016-06-24 10:48:02\n",
- " 1 SEQ_FILE PHYSICAL 2016-06-24 10:48:02\n",
- " 2 RAW_DATA PHYSICAL 2016-06-24 10:48:02\n",
- " 3 ANALYZED_DATA PHYSICAL 2016-06-24 10:48:02\n",
- " 4 ATTACHMENT PHYSICAL 2016-06-24 10:48:02\n",
- " 5 DRAWING_BOARD PHYSICAL 2016-06-24 10:48:02\n",
- " 6 JUPYTER_CONTAINER Jupyter Analysis Results CONTAINER 2016-06-29 15:29:06\n",
- " 7 LINKED-TYPE for use with git LINK 2017-03-02 23:12:48\n",
- " 8 JUPYTER_NOTEBOOK Analysis Notebook Files PHYSICAL 2016-06-29 15:29:07\n",
- " 9 UNKNOWN Unknown PHYSICAL 2016-06-24 10:47:01\n",
- "10 JUPYTER_RESULT Analysis Results Files PHYSICAL 2016-06-29 15:29:06"
+ " code description modificationDate\n",
+ "-- ----------------- ------------------------ -------------------\n",
+ " 0 ELN_PREVIEW ELN Preview image 2016-06-24 10:48:02\n",
+ " 1 SEQ_FILE 2016-06-24 10:48:02\n",
+ " 2 RAW_DATA 2016-06-24 10:48:02\n",
+ " 3 ANALYZED_DATA 2016-06-24 10:48:02\n",
+ " 4 ATTACHMENT 2016-06-24 10:48:02\n",
+ " 5 DRAWING_BOARD 2016-06-24 10:48:02\n",
+ " 6 JUPYTER_CONTAINER Jupyter Analysis Results 2016-06-29 15:29:06\n",
+ " 7 LINKED-TYPE for use with git 2017-03-02 23:12:48\n",
+ " 8 JUPYTER_NOTEBOOK Analysis Notebook Files 2016-06-29 15:29:07\n",
+ " 9 UNKNOWN Unknown 2016-06-24 10:47:01\n",
+ "10 JUPYTER_RESULT Analysis Results Files 2016-06-29 15:29:06"
]
},
- "execution_count": 6,
+ "execution_count": 7,
"metadata": {},
"output_type": "execute_result"
}
@@ -570,18 +740,26 @@
},
{
"cell_type": "code",
- "execution_count": 7,
- "metadata": {
- "collapsed": false
- },
+ "execution_count": 8,
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
- "\n",
"<p>DataSetType: <b>ELN_PREVIEW</b>\n",
- "<p>description: ELN Preview image</p>\n",
+ " <table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th>attribute</th>\n",
+ " <th>value</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr> <td>code</td> <td>ELN_PREVIEW</td> </tr><tr> <td>description</td> <td>ELN Preview image</td> </tr><tr> <td>autoGeneratedCode</td> <td></td> </tr><tr> <td>subcodeUnique</td> <td></td> </tr><tr> <td>generatedCodePrefix</td> <td></td> </tr><tr> <td>listable</td> <td></td> </tr><tr> <td>showContainer</td> <td></td> </tr><tr> <td>showParents</td> <td></td> </tr><tr> <td>showParentMetadata</td> <td></td> </tr>\n",
+ " </tbody>\n",
+ " </table>\n",
" \n",
+ " <p><b>Property Assignments</b>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -611,7 +789,7 @@
" added by different users "
]
},
- "execution_count": 7,
+ "execution_count": 8,
"metadata": {},
"output_type": "execute_result"
}
@@ -629,18 +807,26 @@
},
{
"cell_type": "code",
- "execution_count": 8,
- "metadata": {
- "collapsed": false
- },
+ "execution_count": 9,
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
- "\n",
"<p>DataSetType: <b>ELN_PREVIEW</b>\n",
- "<p>description: ELN Preview image</p>\n",
+ " <table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th>attribute</th>\n",
+ " <th>value</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr> <td>code</td> <td>ELN_PREVIEW</td> </tr><tr> <td>description</td> <td>ELN Preview image</td> </tr><tr> <td>autoGeneratedCode</td> <td></td> </tr><tr> <td>subcodeUnique</td> <td></td> </tr><tr> <td>generatedCodePrefix</td> <td></td> </tr><tr> <td>listable</td> <td></td> </tr><tr> <td>showContainer</td> <td></td> </tr><tr> <td>showParents</td> <td></td> </tr><tr> <td>showParentMetadata</td> <td></td> </tr>\n",
+ " </tbody>\n",
+ " </table>\n",
" \n",
+ " <p><b>Property Assignments</b>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -670,7 +856,7 @@
" added by different users "
]
},
- "execution_count": 8,
+ "execution_count": 9,
"metadata": {},
"output_type": "execute_result"
}
@@ -681,18 +867,26 @@
},
{
"cell_type": "code",
- "execution_count": 9,
- "metadata": {
- "collapsed": false
- },
+ "execution_count": 10,
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
- "\n",
"<p>SampleType: <b>YEAST</b>\n",
- "<p>description: </p>\n",
- " <p>Code autogenerated: True</p>\n",
+ " <table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th>attribute</th>\n",
+ " <th>value</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr> <td>code</td> <td>YEAST</td> </tr><tr> <td>description</td> <td></td> </tr><tr> <td>autoGeneratedCode</td> <td>True</td> </tr><tr> <td>subcodeUnique</td> <td>False</td> </tr><tr> <td>generatedCodePrefix</td> <td>YEA</td> </tr><tr> <td>listable</td> <td>True</td> </tr><tr> <td>showContainer</td> <td>False</td> </tr><tr> <td>showParents</td> <td>True</td> </tr><tr> <td>showParentMetadata</td> <td>False</td> </tr>\n",
+ " </tbody>\n",
+ " </table>\n",
+ " \n",
+ " <p><b>Property Assignments</b>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
@@ -763,13 +957,13 @@
"storage_position Storage Position Storage Position VARCHAR 0 "
]
},
- "execution_count": 9,
+ "execution_count": 10,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
- "o.get_sample_type('YEAST')"
+ "o.get_sample_type(type='YEAST')"
]
},
{
@@ -783,49 +977,636 @@
},
{
"cell_type": "code",
- "execution_count": 10,
- "metadata": {
- "collapsed": false
- },
+ "execution_count": 11,
+ "metadata": {},
"outputs": [
{
"data": {
"text/html": [
+ "<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
"\n",
- " <table border=\"1\" class=\"dataframe\">\n",
- " <thead>\n",
- " <tr style=\"text-align: right;\">\n",
- " <th>vocabulary term</th>\n",
- " <th>label</th>\n",
- " <th>description</th>\n",
- " <th>vocabulary</th>\n",
- " </tr>\n",
- " </thead>\n",
- " <tbody>\n",
- " <tr> <td>A</td> <td>a</td> <td>None</td> <td>MATING_TYPE</td> </tr><tr> <td>ALPHA</td> <td>alpha</td> <td>None</td> <td>MATING_TYPE</td> </tr><tr> <td>DIPLOID</td> <td>diploid</td> <td>None</td> <td>MATING_TYPE</td> </tr><tr> <td>UNKNOWN</td> <td>unknown</td> <td>None</td> <td>MATING_TYPE</td> </tr>\n",
- " </tbody>\n",
- " </table>\n",
- " "
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
+ "<table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th></th>\n",
+ " <th>code</th>\n",
+ " <th>description</th>\n",
+ " <th>managedInternally</th>\n",
+ " <th>internalNameSpace</th>\n",
+ " <th>chosenFromList</th>\n",
+ " <th>urlTemplate</th>\n",
+ " <th>registrator</th>\n",
+ " <th>registrationDate</th>\n",
+ " <th>modificationDate</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr>\n",
+ " <th>0</th>\n",
+ " <td>$STORAGE_FORMAT</td>\n",
+ " <td>The on-disk storage format of a data set</td>\n",
+ " <td>True</td>\n",
+ " <td>True</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:01</td>\n",
+ " <td>2016-06-24 10:47:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>1</th>\n",
+ " <td>AAA</td>\n",
+ " <td>description of vocabulary aaa</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>https://ethz.ch</td>\n",
+ " <td>vermeul</td>\n",
+ " <td>2018-05-13 02:24:15</td>\n",
+ " <td>2018-05-13 02:24:15</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>2</th>\n",
+ " <td>BACKBONE</td>\n",
+ " <td>Backbone of the plasmid</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>3</th>\n",
+ " <td>BACKGROUND_SPECIFIC_MARKERS</td>\n",
+ " <td>Background-specific markers available in the s...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>4</th>\n",
+ " <td>BACTERIAL_ANTIBIOTIC_RESISTANCE</td>\n",
+ " <td>Bacterial antibiotic resistance</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>5</th>\n",
+ " <td>BBB</td>\n",
+ " <td>description of vocabulary aaa</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>https://ethz.ch</td>\n",
+ " <td>vermeul</td>\n",
+ " <td>2018-05-16 16:05:01</td>\n",
+ " <td>2018-05-16 16:05:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>6</th>\n",
+ " <td>BLABA</td>\n",
+ " <td>None</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>None</td>\n",
+ " <td>vermeul</td>\n",
+ " <td>2018-05-08 01:51:55</td>\n",
+ " <td>2018-05-08 01:51:55</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>7</th>\n",
+ " <td>CELL_MEDIUM</td>\n",
+ " <td>Medium used to cultivate or manipulate the cel...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>8</th>\n",
+ " <td>CELL_TYPE</td>\n",
+ " <td>Cell type</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>9</th>\n",
+ " <td>CHECK</td>\n",
+ " <td>Check done to verify the modifications introdu...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>10</th>\n",
+ " <td>CLONALITY</td>\n",
+ " <td>Clonality of the antibody</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>11</th>\n",
+ " <td>COLOR_ENCODED_ANNOTATIONS</td>\n",
+ " <td>Colors used to annotate wells visually</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>12</th>\n",
+ " <td>COMMON_MARKERS</td>\n",
+ " <td>Common Markers</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>13</th>\n",
+ " <td>CURRENCY</td>\n",
+ " <td>Currency</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2017-09-20 14:07:28</td>\n",
+ " <td>2017-09-20 14:08:20</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>14</th>\n",
+ " <td>DETECTION</td>\n",
+ " <td>Protein detection system</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>15</th>\n",
+ " <td>DIRECTION</td>\n",
+ " <td>Direction of the oligonucleotide</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>16</th>\n",
+ " <td>ELN_TYPES_METADATA</td>\n",
+ " <td>The presence of this vocabulary indicates the ...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>17</th>\n",
+ " <td>ENDOGENOUS_PLASMID</td>\n",
+ " <td>Presence of an endogenous cir 2-micron plasmid</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>18</th>\n",
+ " <td>EXPERIMENTAL_READOUT</td>\n",
+ " <td>Experimental readout used</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>19</th>\n",
+ " <td>GENETIC_BACKGROUND</td>\n",
+ " <td>Genetic background of the yeast strain</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>20</th>\n",
+ " <td>HOST</td>\n",
+ " <td>Host organism</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>21</th>\n",
+ " <td>LANGUAGE</td>\n",
+ " <td>Language</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2017-09-20 14:07:28</td>\n",
+ " <td>2017-09-20 14:08:20</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>22</th>\n",
+ " <td>MACHINE</td>\n",
+ " <td>Machine used</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>23</th>\n",
+ " <td>MARKER</td>\n",
+ " <td>Marker to select the strain/cell line after tr...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>24</th>\n",
+ " <td>MATING_TYPE</td>\n",
+ " <td>Mating type or ploidy of the yeast strain</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>25</th>\n",
+ " <td>MEMBRANE</td>\n",
+ " <td>Type of membrane used for western blotting</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>26</th>\n",
+ " <td>ORDER_STATUS</td>\n",
+ " <td>Order Status</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2017-09-20 14:07:28</td>\n",
+ " <td>2017-09-20 14:08:20</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>27</th>\n",
+ " <td>ORGANISM</td>\n",
+ " <td>Organism</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>28</th>\n",
+ " <td>ORIGIN</td>\n",
+ " <td>How the strain/cell line was produced</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>29</th>\n",
+ " <td>OWNER</td>\n",
+ " <td>Who produced/owns the sample</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>30</th>\n",
+ " <td>PLASMID_RELATIONSHIP</td>\n",
+ " <td>Kind of plasmid relationship</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>31</th>\n",
+ " <td>PREFERRED_ORDER_METHOD</td>\n",
+ " <td>Preferred Order Method</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2017-09-20 14:07:28</td>\n",
+ " <td>2017-09-20 14:08:20</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>32</th>\n",
+ " <td>PROTOCOL_TYPE</td>\n",
+ " <td>Type of protocol</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>33</th>\n",
+ " <td>RNA_BACKBONE</td>\n",
+ " <td>Type of backbone, modifications in the backbone</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>34</th>\n",
+ " <td>RNA_TYPE</td>\n",
+ " <td>Type of RNA in terms of function: mimic of RNA...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>35</th>\n",
+ " <td>SPECIES</td>\n",
+ " <td>Species to which the cell line belongs</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>36</th>\n",
+ " <td>STERILIZATION</td>\n",
+ " <td>How the solution/buffer is sterilized when pre...</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>37</th>\n",
+ " <td>STORAGE</td>\n",
+ " <td>Different storage conditions</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>38</th>\n",
+ " <td>STORAGE_BOX_SIZE</td>\n",
+ " <td>Boxes available on the lab</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>39</th>\n",
+ " <td>STORAGE_NAMES</td>\n",
+ " <td>Storages available on the lab</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>40</th>\n",
+ " <td>STORAGE_VALIDATION_LEVEL</td>\n",
+ " <td>Validation Level</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2017-09-20 14:07:28</td>\n",
+ " <td>2017-09-20 14:08:20</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>41</th>\n",
+ " <td>STRAND</td>\n",
+ " <td>Double or single strand RNA</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>42</th>\n",
+ " <td>TEMPLATE</td>\n",
+ " <td>Type of template used in the PCR protocol</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>43</th>\n",
+ " <td>YES_NO_CHOICE</td>\n",
+ " <td>Yes or No or Unknown Choice</td>\n",
+ " <td>False</td>\n",
+ " <td>False</td>\n",
+ " <td>True</td>\n",
+ " <td>None</td>\n",
+ " <td>system</td>\n",
+ " <td>2016-06-24 10:47:11</td>\n",
+ " <td>2016-06-24 10:48:01</td>\n",
+ " </tr>\n",
+ " </tbody>\n",
+ "</table>\n",
+ "</div>"
],
"text/plain": [
- "<pybis.masterdata.Vocabulary at 0x7f44a833b898>"
+ " code description managedInternally internalNameSpace chosenFromList urlTemplate registrator registrationDate modificationDate\n",
+ "-- ------------------------------- ------------------------------------------------------------------------------------------------------ ------------------- ------------------- ---------------- --------------- ------------- ------------------- -------------------\n",
+ " 0 $STORAGE_FORMAT The on-disk storage format of a data set True True True system 2016-06-24 10:47:01 2016-06-24 10:47:01\n",
+ " 1 AAA description of vocabulary aaa False False True https://ethz.ch vermeul 2018-05-13 02:24:15 2018-05-13 02:24:15\n",
+ " 2 BACKBONE Backbone of the plasmid False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ " 3 BACKGROUND_SPECIFIC_MARKERS Background-specific markers available in the strain for further genetic modifications False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ " 4 BACTERIAL_ANTIBIOTIC_RESISTANCE Bacterial antibiotic resistance False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ " 5 BBB description of vocabulary aaa False False True https://ethz.ch vermeul 2018-05-16 16:05:01 2018-05-16 16:05:01\n",
+ " 6 BLABA False False False vermeul 2018-05-08 01:51:55 2018-05-08 01:51:55\n",
+ " 7 CELL_MEDIUM Medium used to cultivate or manipulate the cell line False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ " 8 CELL_TYPE Cell type False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ " 9 CHECK Check done to verify the modifications introduced in the cell line False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "10 CLONALITY Clonality of the antibody False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "11 COLOR_ENCODED_ANNOTATIONS Colors used to annotate wells visually False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "12 COMMON_MARKERS Common Markers False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "13 CURRENCY Currency False False True system 2017-09-20 14:07:28 2017-09-20 14:08:20\n",
+ "14 DETECTION Protein detection system False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "15 DIRECTION Direction of the oligonucleotide False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "16 ELN_TYPES_METADATA The presence of this vocabulary indicates the ELN Plugin that the ELN master data script was executed. False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "17 ENDOGENOUS_PLASMID Presence of an endogenous cir 2-micron plasmid False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "18 EXPERIMENTAL_READOUT Experimental readout used False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "19 GENETIC_BACKGROUND Genetic background of the yeast strain False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "20 HOST Host organism False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "21 LANGUAGE Language False False True system 2017-09-20 14:07:28 2017-09-20 14:08:20\n",
+ "22 MACHINE Machine used False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "23 MARKER Marker to select the strain/cell line after transformation/transfection False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "24 MATING_TYPE Mating type or ploidy of the yeast strain False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "25 MEMBRANE Type of membrane used for western blotting False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "26 ORDER_STATUS Order Status False False True system 2017-09-20 14:07:28 2017-09-20 14:08:20\n",
+ "27 ORGANISM Organism False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "28 ORIGIN How the strain/cell line was produced False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "29 OWNER Who produced/owns the sample False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "30 PLASMID_RELATIONSHIP Kind of plasmid relationship False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "31 PREFERRED_ORDER_METHOD Preferred Order Method False False True system 2017-09-20 14:07:28 2017-09-20 14:08:20\n",
+ "32 PROTOCOL_TYPE Type of protocol False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "33 RNA_BACKBONE Type of backbone, modifications in the backbone False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "34 RNA_TYPE Type of RNA in terms of function: mimic of RNAi or inhibitor of RNAi False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "35 SPECIES Species to which the cell line belongs False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "36 STERILIZATION How the solution/buffer is sterilized when prepared False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "37 STORAGE Different storage conditions False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "38 STORAGE_BOX_SIZE Boxes available on the lab False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "39 STORAGE_NAMES Storages available on the lab False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "40 STORAGE_VALIDATION_LEVEL Validation Level False False True system 2017-09-20 14:07:28 2017-09-20 14:08:20\n",
+ "41 STRAND Double or single strand RNA False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "42 TEMPLATE Type of template used in the PCR protocol False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01\n",
+ "43 YES_NO_CHOICE Yes or No or Unknown Choice False False True system 2016-06-24 10:47:11 2016-06-24 10:48:01"
]
},
- "execution_count": 10,
+ "execution_count": 11,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
- "o.get_terms('MATING_TYPE')"
+ "o.get_vocabularies()"
]
},
{
"cell_type": "code",
- "execution_count": 11,
- "metadata": {
- "collapsed": false
- },
+ "execution_count": 12,
+ "metadata": {},
"outputs": [
{
"data": {
@@ -834,29 +1615,37 @@
" <table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
- " <th>vocabulary term</th>\n",
- " <th>label</th>\n",
- " <th>description</th>\n",
- " <th>vocabulary</th>\n",
+ " <th>attribute</th>\n",
+ " <th>value</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
- " <tr> <td>CROSS</td> <td>cross</td> <td>The strain was produced by crossing two parent strains</td> <td>ORIGIN</td> </tr><tr> <td>TRANSFORMATION</td> <td>transformation</td> <td>The strain/ cell line was obtained by transformation</td> <td>ORIGIN</td> </tr><tr> <td>SPORULATION</td> <td>transformation sporulation</td> <td>The strain was obtained by sporulating a parent diploid strain</td> <td>ORIGIN</td> </tr><tr> <td>NEGATIVE_SELECTION</td> <td>negative selection</td> <td>The strain/cell line was obtained by negative selection</td> <td>ORIGIN</td> </tr><tr> <td>TRANSFECTION</td> <td>transfection</td> <td>The strain/cell line was obtained by transfection</td> <td>ORIGIN</td> </tr>\n",
+ " <tr> <td>code</td> <td>EXPERIMENTAL_READOUT</td> </tr><tr> <td>description</td> <td>Experimental readout used</td> </tr><tr> <td>managedInternally</td> <td>False</td> </tr><tr> <td>internalNameSpace</td> <td>False</td> </tr><tr> <td>chosenFromList</td> <td>True</td> </tr><tr> <td>urlTemplate</td> <td></td> </tr><tr> <td>registrator</td> <td>system</td> </tr><tr> <td>registrationDate</td> <td>2016-06-24 10:47:11</td> </tr><tr> <td>modificationDate</td> <td>2016-06-24 10:48:01</td> </tr>\n",
" </tbody>\n",
" </table>\n",
" "
],
"text/plain": [
- "<pybis.masterdata.Vocabulary at 0x7f4485855e80>"
+ "attribute value\n",
+ "----------------- -------------------------\n",
+ "code EXPERIMENTAL_READOUT\n",
+ "description Experimental readout used\n",
+ "managedInternally False\n",
+ "internalNameSpace False\n",
+ "chosenFromList True\n",
+ "urlTemplate\n",
+ "registrator system\n",
+ "registrationDate 2016-06-24 10:47:11\n",
+ "modificationDate 2016-06-24 10:48:01"
]
},
- "execution_count": 11,
+ "execution_count": 12,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
- "o.get_terms('origin')"
+ "o.get_vocabulary('EXPERIMENTAL_READOUT')"
]
},
{
@@ -868,9 +1657,8 @@
},
{
"cell_type": "code",
- "execution_count": 12,
+ "execution_count": 6,
"metadata": {
- "collapsed": false,
"scrolled": false
},
"outputs": [
@@ -878,148 +1666,291 @@
"data": {
"text/html": [
"<div>\n",
+ "<style scoped>\n",
+ " .dataframe tbody tr th:only-of-type {\n",
+ " vertical-align: middle;\n",
+ " }\n",
+ "\n",
+ " .dataframe tbody tr th {\n",
+ " vertical-align: top;\n",
+ " }\n",
+ "\n",
+ " .dataframe thead th {\n",
+ " text-align: right;\n",
+ " }\n",
+ "</style>\n",
"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
+ " <th>permId</th>\n",
" <th>code</th>\n",
+ " <th>description</th>\n",
+ " <th>owner</th>\n",
+ " <th>private</th>\n",
" <th>registrationDate</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
+ " <td>/vermeul/A_TAG</td>\n",
" <td>A_tag</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-07-05 23:45:04</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
+ " <td>/vermeul/CREATE_JSON_TAG</td>\n",
" <td>CREATE_JSON_TAG</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-06-30 00:36:50</td>\n",
" </tr>\n",
" <tr>\n",
" <th>2</th>\n",
+ " <td>/vermeul/CREATE_JSON_TAG_2</td>\n",
" <td>CREATE_JSON_TAG_2</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-07-06 00:07:07</td>\n",
" </tr>\n",
" <tr>\n",
" <th>3</th>\n",
+ " <td>/vermeul/CREATE_JSON_TAG_3</td>\n",
" <td>CREATE_JSON_TAG_3</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-07-06 00:07:07</td>\n",
" </tr>\n",
" <tr>\n",
" <th>4</th>\n",
+ " <td>/vermeul/CREATE_JSON_TAG_BLALBAL</td>\n",
" <td>CREATE_JSON_TAG_blalbal</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-11-08 10:24:18</td>\n",
" </tr>\n",
" <tr>\n",
" <th>5</th>\n",
+ " <td>/vermeul/TEST_TAG_11</td>\n",
+ " <td>TEST_TAG_11</td>\n",
+ " <td>description of tag TEST_TAG_11</td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
+ " <td>2018-03-06 16:17:58</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>6</th>\n",
+ " <td>/vermeul/ANOTHER_NICE_TAG</td>\n",
" <td>another_nice_tag</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-10-06 14:43:21</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>6</th>\n",
+ " <th>7</th>\n",
+ " <td>/vermeul/ANOTHER_TAG</td>\n",
" <td>another_tag</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-10-04 11:29:02</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>7</th>\n",
+ " <th>8</th>\n",
+ " <td>/vermeul/BLBLBLBLBLB</td>\n",
" <td>blblblblblb</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-10-06 14:47:45</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>8</th>\n",
+ " <th>9</th>\n",
+ " <td>/vermeul/CLUE</td>\n",
" <td>clue</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-26 23:48:08</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>9</th>\n",
+ " <th>10</th>\n",
+ " <td>/vermeul/DO</td>\n",
" <td>do</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:14</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>10</th>\n",
+ " <th>11</th>\n",
+ " <td>/vermeul/DUE</td>\n",
" <td>due</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-06-30 17:18:11</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>11</th>\n",
+ " <th>12</th>\n",
+ " <td>/vermeul/FA</td>\n",
" <td>fa</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:29</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>12</th>\n",
+ " <th>13</th>\n",
+ " <td>/vermeul/GIMME_A_TAG</td>\n",
" <td>gimme_a_tag</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-11-18 15:20:10</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>13</th>\n",
+ " <th>14</th>\n",
+ " <td>/vermeul/GIMME_ONE_MORE</td>\n",
" <td>gimme_one_more</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-10-27 02:03:25</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>14</th>\n",
+ " <th>15</th>\n",
+ " <td>/vermeul/LA</td>\n",
" <td>la</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:29</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>15</th>\n",
+ " <th>16</th>\n",
+ " <td>/vermeul/MI</td>\n",
" <td>mi</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:29</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>16</th>\n",
+ " <th>17</th>\n",
+ " <td>/vermeul/NEW_TAG</td>\n",
" <td>new_tag</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-10-06 10:49:15</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>17</th>\n",
+ " <th>18</th>\n",
+ " <td>/vermeul/NEW_TAG1</td>\n",
+ " <td>new_tag1</td>\n",
+ " <td>description for new_tag1</td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
+ " <td>2018-09-30 01:24:52</td>\n",
+ " </tr>\n",
+ " <tr>\n",
+ " <th>19</th>\n",
+ " <td>/vermeul/NO</td>\n",
" <td>no</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-26 23:48:08</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>18</th>\n",
+ " <th>20</th>\n",
+ " <td>/vermeul/ONE</td>\n",
" <td>one</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-11-09 14:27:58</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>19</th>\n",
+ " <th>21</th>\n",
+ " <td>/vermeul/RE</td>\n",
" <td>re</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:29</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>20</th>\n",
+ " <th>22</th>\n",
+ " <td>/vermeul/SO</td>\n",
" <td>so</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:29</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>21</th>\n",
+ " <th>23</th>\n",
+ " <td>/vermeul/THREE</td>\n",
" <td>three</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-11-09 14:27:58</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>22</th>\n",
+ " <th>24</th>\n",
+ " <td>/vermeul/TI</td>\n",
" <td>ti</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-09-12 23:57:29</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>23</th>\n",
+ " <th>25</th>\n",
+ " <td>/vermeul/TOO_LATE</td>\n",
" <td>too_late</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-10-06 10:56:07</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>24</th>\n",
+ " <th>26</th>\n",
+ " <td>/vermeul/TRE</td>\n",
" <td>tre</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-06-30 17:18:11</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>25</th>\n",
+ " <th>27</th>\n",
+ " <td>/vermeul/TWO</td>\n",
" <td>two</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-11-09 14:27:58</td>\n",
" </tr>\n",
" <tr>\n",
- " <th>26</th>\n",
+ " <th>28</th>\n",
+ " <td>/vermeul/UNO</td>\n",
" <td>uno</td>\n",
+ " <td></td>\n",
+ " <td>vermeul</td>\n",
+ " <td>True</td>\n",
" <td>2016-06-30 17:18:11</td>\n",
" </tr>\n",
" </tbody>\n",
@@ -1027,37 +1958,40 @@
"</div>"
],
"text/plain": [
- " code registrationDate\n",
- "0 A_tag 2016-07-05 23:45:04\n",
- "1 CREATE_JSON_TAG 2016-06-30 00:36:50\n",
- "2 CREATE_JSON_TAG_2 2016-07-06 00:07:07\n",
- "3 CREATE_JSON_TAG_3 2016-07-06 00:07:07\n",
- "4 CREATE_JSON_TAG_blalbal 2016-11-08 10:24:18\n",
- "5 another_nice_tag 2016-10-06 14:43:21\n",
- "6 another_tag 2016-10-04 11:29:02\n",
- "7 blblblblblb 2016-10-06 14:47:45\n",
- "8 clue 2016-09-26 23:48:08\n",
- "9 do 2016-09-12 23:57:14\n",
- "10 due 2016-06-30 17:18:11\n",
- "11 fa 2016-09-12 23:57:29\n",
- "12 gimme_a_tag 2016-11-18 15:20:10\n",
- "13 gimme_one_more 2016-10-27 02:03:25\n",
- "14 la 2016-09-12 23:57:29\n",
- "15 mi 2016-09-12 23:57:29\n",
- "16 new_tag 2016-10-06 10:49:15\n",
- "17 no 2016-09-26 23:48:08\n",
- "18 one 2016-11-09 14:27:58\n",
- "19 re 2016-09-12 23:57:29\n",
- "20 so 2016-09-12 23:57:29\n",
- "21 three 2016-11-09 14:27:58\n",
- "22 ti 2016-09-12 23:57:29\n",
- "23 too_late 2016-10-06 10:56:07\n",
- "24 tre 2016-06-30 17:18:11\n",
- "25 two 2016-11-09 14:27:58\n",
- "26 uno 2016-06-30 17:18:11"
+ " permId code description owner private registrationDate\n",
+ "-- -------------------------------- ----------------------- ------------------------------ ------- --------- -------------------\n",
+ " 0 /vermeul/A_TAG A_tag vermeul True 2016-07-05 23:45:04\n",
+ " 1 /vermeul/CREATE_JSON_TAG CREATE_JSON_TAG vermeul True 2016-06-30 00:36:50\n",
+ " 2 /vermeul/CREATE_JSON_TAG_2 CREATE_JSON_TAG_2 vermeul True 2016-07-06 00:07:07\n",
+ " 3 /vermeul/CREATE_JSON_TAG_3 CREATE_JSON_TAG_3 vermeul True 2016-07-06 00:07:07\n",
+ " 4 /vermeul/CREATE_JSON_TAG_BLALBAL CREATE_JSON_TAG_blalbal vermeul True 2016-11-08 10:24:18\n",
+ " 5 /vermeul/TEST_TAG_11 TEST_TAG_11 description of tag TEST_TAG_11 vermeul True 2018-03-06 16:17:58\n",
+ " 6 /vermeul/ANOTHER_NICE_TAG another_nice_tag vermeul True 2016-10-06 14:43:21\n",
+ " 7 /vermeul/ANOTHER_TAG another_tag vermeul True 2016-10-04 11:29:02\n",
+ " 8 /vermeul/BLBLBLBLBLB blblblblblb vermeul True 2016-10-06 14:47:45\n",
+ " 9 /vermeul/CLUE clue vermeul True 2016-09-26 23:48:08\n",
+ "10 /vermeul/DO do vermeul True 2016-09-12 23:57:14\n",
+ "11 /vermeul/DUE due vermeul True 2016-06-30 17:18:11\n",
+ "12 /vermeul/FA fa vermeul True 2016-09-12 23:57:29\n",
+ "13 /vermeul/GIMME_A_TAG gimme_a_tag vermeul True 2016-11-18 15:20:10\n",
+ "14 /vermeul/GIMME_ONE_MORE gimme_one_more vermeul True 2016-10-27 02:03:25\n",
+ "15 /vermeul/LA la vermeul True 2016-09-12 23:57:29\n",
+ "16 /vermeul/MI mi vermeul True 2016-09-12 23:57:29\n",
+ "17 /vermeul/NEW_TAG new_tag vermeul True 2016-10-06 10:49:15\n",
+ "18 /vermeul/NEW_TAG1 new_tag1 description for new_tag1 vermeul True 2018-09-30 01:24:52\n",
+ "19 /vermeul/NO no vermeul True 2016-09-26 23:48:08\n",
+ "20 /vermeul/ONE one vermeul True 2016-11-09 14:27:58\n",
+ "21 /vermeul/RE re vermeul True 2016-09-12 23:57:29\n",
+ "22 /vermeul/SO so vermeul True 2016-09-12 23:57:29\n",
+ "23 /vermeul/THREE three vermeul True 2016-11-09 14:27:58\n",
+ "24 /vermeul/TI ti vermeul True 2016-09-12 23:57:29\n",
+ "25 /vermeul/TOO_LATE too_late vermeul True 2016-10-06 10:56:07\n",
+ "26 /vermeul/TRE tre vermeul True 2016-06-30 17:18:11\n",
+ "27 /vermeul/TWO two vermeul True 2016-11-09 14:27:58\n",
+ "28 /vermeul/UNO uno vermeul True 2016-06-30 17:18:11"
]
},
- "execution_count": 12,
+ "execution_count": 6,
"metadata": {},
"output_type": "execute_result"
}
@@ -1066,12 +2000,50 @@
"o.get_tags()"
]
},
+ {
+ "cell_type": "code",
+ "execution_count": 4,
+ "metadata": {},
+ "outputs": [
+ {
+ "data": {
+ "text/html": [
+ "\n",
+ " <table border=\"1\" class=\"dataframe\">\n",
+ " <thead>\n",
+ " <tr style=\"text-align: right;\">\n",
+ " <th>attribute</th>\n",
+ " <th>value</th>\n",
+ " </tr>\n",
+ " </thead>\n",
+ " <tbody>\n",
+ " <tr> <td>permId</td> <td>/vermeul/A_TAG</td> </tr><tr> <td>code</td> <td>A_tag</td> </tr><tr> <td>description</td> <td></td> </tr><tr> <td>registrationDate</td> <td>2016-07-05 23:45:04</td> </tr>\n",
+ " </tbody>\n",
+ " </table>\n",
+ " "
+ ],
+ "text/plain": [
+ "attribute value\n",
+ "---------------- -------------------\n",
+ "permId /vermeul/A_TAG\n",
+ "code A_tag\n",
+ "description\n",
+ "registrationDate 2016-07-05 23:45:04"
+ ]
+ },
+ "execution_count": 4,
+ "metadata": {},
+ "output_type": "execute_result"
+ }
+ ],
+ "source": [
+ "o.get_tag('/vermeul/A_TAG')"
+ ]
+ },
{
"cell_type": "code",
"execution_count": null,
- "metadata": {
- "collapsed": true
- },
+ "metadata": {},
"outputs": [],
"source": []
}
@@ -1092,9 +2064,9 @@
"name": "python",
"nbconvert_exporter": "python",
"pygments_lexer": "ipython3",
- "version": "3.5.2"
+ "version": "3.6.0"
}
},
"nbformat": 4,
- "nbformat_minor": 0
+ "nbformat_minor": 1
}