diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java index 68fdf2942a709995a48e087f8dcfb5ce18b406f0..90c2415636c5c8a1c9f9535300e5dcb2848dc641 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java @@ -85,11 +85,16 @@ public abstract class DataSetRegistrationAlgorithm this.dataStoreStrategy = getDataStrategyStore() .getDataStoreStrategy(dataSetInformation, incomingDataSetFile); - this.dataSetType = getTypeExtractor().getDataSetType(incomingDataSetFile); + this.dataSetType = extractDataSetType(); dataSetInformation.setDataSetType(dataSetType); this.storeRoot = getStorageProcessor().getStoreRootDirectory(); } + protected DataSetType extractDataSetType() + { + return getTypeExtractor().getDataSetType(incomingDataSetFile); + } + /** * Prepare registration of a data set. */ @@ -101,7 +106,7 @@ public abstract class DataSetRegistrationAlgorithm new BaseDirectoryHolder(dataStoreStrategy, baseDirectory, incomingDataSetFile); } - final boolean hasDataSetBeenIdentified() + public final boolean hasDataSetBeenIdentified() { return dataStoreStrategy.getKey() == DataStoreStrategyKey.IDENTIFIED; } @@ -259,7 +264,7 @@ public abstract class DataSetRegistrationAlgorithm /** * This method is only ever called for unidentified data sets. */ - final void dealWithUnidentifiedDataSet() + public final void dealWithUnidentifiedDataSet() { final boolean ok = shouldDeleteUnidentified() ? (removeAndLog(incomingDataSetFile.getName() @@ -360,7 +365,7 @@ public abstract class DataSetRegistrationAlgorithm * * @return never <code>null</code> but prefers to throw an exception. */ - private final DataSetInformation extractDataSetInformation(final File incomingDataSetPath) + protected DataSetInformation extractDataSetInformation(final File incomingDataSetPath) { String errorMessage = "Error when trying to identify data set '" + incomingDataSetPath.getAbsolutePath() @@ -426,7 +431,7 @@ public abstract class DataSetRegistrationAlgorithm final NewExternalData data = new NewExternalData(); data.setExtractableData(dataSetInformation.getExtractableData()); data.setLocatorType(getTypeExtractor().getLocatorType(incomingDataSetFile)); - data.setDataSetType(getTypeExtractor().getDataSetType(incomingDataSetFile)); + data.setDataSetType(extractDataSetType()); data.setFileFormatType(getTypeExtractor().getFileFormatType(incomingDataSetFile)); data.setMeasured(getTypeExtractor().isMeasuredData(incomingDataSetFile)); data.setDataStoreCode(getDataStoreCode()); diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java index 5f84c52a74aa7ee5e53ba2567187698b1040e4ec..0dd941bc1ddf001e58fc16b77d83da764009748a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/TransferredDataSetHandler.java @@ -71,7 +71,7 @@ public final class TransferredDataSetHandler implements IPathHandler, ISelfTesta static final String SUCCESSFULLY_REGISTERED = "Successfully registered data set: ["; @Private - static final String EMAIL_SUBJECT_TEMPLATE = "Success: data set for experiment '%s"; + public static final String EMAIL_SUBJECT_TEMPLATE = "Success: data set for experiment '%s"; static final Logger notificationLog = LogFactory.getLogger(LogCategory.NOTIFY, TransferredDataSetHandler.class);