diff --git a/deep_sequencing_unit/source/Jython/createSampleSheetTest.py b/deep_sequencing_unit/source/Jython/createSampleSheetTest.py
index 6144caba174110148364e02b37ed46c07ecbb25a..0d8b17b45553c1cc050cc49d3923d672490339b4 100644
--- a/deep_sequencing_unit/source/Jython/createSampleSheetTest.py
+++ b/deep_sequencing_unit/source/Jython/createSampleSheetTest.py
@@ -1,71 +1,186 @@
import unittest
from createSampleSheet import *
+from optparse import OptionParser
+
+def setUpLogger(logPath, logLevel=logging.INFO):
+ logFileName = 'createSampleSheet'
+ d = datetime.now()
+ logFileName = logFileName + '_' + d.strftime('%Y-%m-%d_%H_%M_%S') + '.log'
+ logging.basicConfig(filename=logPath + logFileName,
+ format='%(asctime)s [%(levelname)s] %(message)s', level=logLevel)
+ logger = logging.getLogger(logFileName)
+ return logger
+
+def setUpParser(self):
+ '''is there a more elegant way to mock parser object, except the v3.3
+ unitest.mock object library?'''
+
+ self.parser = OptionParser()
+ self.parser.add_option('--verbose', dest='verbose')
+ self.parser.add_option('--lineending', dest='lineending')
+ self.parser.add_option('--maillist', dest='maillist')
+ self.parser.add_option('--singlelane', dest='singlelane')
+ self.parser.add_option('--flowcell', dest='flowcell')
+ self.parser.add_option('--outdir', dest='outdir')
+ self.parser.add_option('--debug', dest='debug')
+ self.parser.verbose = False
+ self.parser.lineending = 'linux'
+ self.parser.maillist = False
+ self.parser.singlelane = False
+ self.parser.flowcell = '140127_SN792_0312_AC36DWACXX'
+ self.parser.outdir = './'
+ self.parser.debug = True
+ return self.parser
class TestCreateHiseqSampleSheet(unittest.TestCase):
+ '''
+ There are three cases currently covered:
+ Case1: PhiX and one or more other non-barcoded samples in a lane -> only one sample in the Sample Sheet
+ Case2: PhiX and one ore more barcoded samples in a lane -> all samples but PhiX in the Sample Sheet
+ Case3: PhiX in a lane -> Phix in the Sample Sheet
+
+ Also no Pools are allowed these are only relevant for the lab
+ '''
def setUp(self):
- from optparse import OptionParser
-
- def setUpLogger(logPath, logLevel=logging.INFO):
- logFileName = 'createSampleSheet'
- d = datetime.now()
- logFileName = logFileName + '_' + d.strftime('%Y-%m-%d_%H_%M_%S') + '.log'
- logging.basicConfig(filename=logPath + logFileName,
- format='%(asctime)s [%(levelname)s] %(message)s', level=logLevel)
- logger = logging.getLogger(logFileName)
- return logger
-
+ self.parser = setUpParser(self)
self.logger = setUpLogger('log/')
-
- self.parentDict = {u'BSSE_QGF_16252_140127_SN792_0312_AC36DWACXX_2': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'402', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'10.1', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:2', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 38.65', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_34', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ': u' 17.9', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 2.1'}, u'BSSE_QGF_16256_140127_SN792_0312_AC36DWACXX_7': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'363', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'9.1', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:7', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 38.57', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_38', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ': u' 17.9', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 2.1'}, u'BSSE_QGF_19990_140127_SN792_0312_AC36DWACXX_5': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'KIT_PREPARED': u'2013-12-09 12:00:00 +0100', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'2', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:5', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'DNA_CONCENTRATION_OF_LIBRARY': u'2', u'EXTERNAL_SAMPLE_NAME': u'Pool201_293', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-05 12:00:00 +0100', u'KIT': u'NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_6': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:6', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16253_140127_SN792_0312_AC36DWACXX_3': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'383', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.5', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'6.5', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:3', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 26.11', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_35', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ': u' 16.9', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.5', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 3.1'}, u'BSSE_QGF_16254_140127_SN792_0312_AC36DWACXX_4': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'385', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'9.9', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:4', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 39.56', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_36', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ': u' 18.0', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 2.0'}, u'BSSE_QGF_19989_140127_SN792_0312_AC36DWACXX_5': {u'QC_AT_DBSSE': u'false', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'581', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 48.4', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CONCENTRATION_PREPARED_ILLUMINA': u'23.4', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'KIT_PREPARED': u'2013-12-09 12:00:00 +0100', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'2', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'SINGLE_READ', u'BARCODE': u'GTGAAAC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:5', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'NM_DNA': u' 61.96', u'CONCENTRATION_ORIGINAL_ILLUMINA': u'38.3', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'EXTERNAL_SAMPLE_NAME': u'293', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-05 12:00:00 +0100', u'UL_EB_MISEQ': u' 46.8', u'KIT': u'NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.6', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'50', u'UL_DNA_MISEQ': u' 3.2'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_7': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:7', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:8', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_2': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:2', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16251_140127_SN792_0312_AC36DWACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'375', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CONCENTRATION_PREPARED_ILLUMINA': u'9.5', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'3', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CREATED_ON_CS': u'2014-01-08 12:00:00 +0100', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:1', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 38.97', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'15% Phix spike-in, this pool as test on SR50 first', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_33', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ': u' 17.9', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'1', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 2.1'}, u'BSSE_QGF_19988_140127_SN792_0312_AC36DWACXX_5': {u'QC_AT_DBSSE': u'false', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'564', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 48.9', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CONCENTRATION_PREPARED_ILLUMINA': u'33.3', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'KIT_PREPARED': u'2013-12-09 12:00:00 +0100', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'2', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'SINGLE_READ', u'BARCODE': u'ACAGTGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:5', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'NM_DNA': u' 90.83', u'CONCENTRATION_ORIGINAL_ILLUMINA': u'58.2', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'EXTERNAL_SAMPLE_NAME': u'201', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-05 12:00:00 +0100', u'UL_EB_MISEQ': u' 47.8', u'KIT': u'NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.1', u'NUMBER_OF_ATTACHMENTS': u'1', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'50', u'UL_DNA_MISEQ': u' 2.2'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_3': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:3', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16255_140127_SN792_0312_AC36DWACXX_6': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'373', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.2', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'12.2', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:6', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 50.32', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_37', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 18.4', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 0.8', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 1.6'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:4', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_1': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:1', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16257_140127_SN792_0312_AC36DWACXX_8': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'361', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'9.6', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'481459', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'CYCLES': u'157', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'marius.roesti@unibas.ch', u'INVOICE': u'false', 'LANE': u'140127_SN792_0312_AC36DWACXX:8', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Marius', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Marius R\xf6sti', u'REQUIRED_LANES': u'1', u'NM_DNA': u' 40.91', u'CYCLES_REQUESTED_BY_CUSTOMER': u'150', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'10-15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME': u'Walter Salzburger', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION': u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME': u'Ga_lib_39', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-06 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 18.0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'walter.salzburger@unibas.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'1', u'SAMPLE_KIND': u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION': u'v8', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 2.0'}}
- self.flowCellDict = {u'CONTROL_LANE': u'5', u'RUNNINGTIME': u'7 days, 18:25:19', u'SEQUENCER_FINISHED': u'2014-02-04 07:40:26 +0100', u'ILLUMINA_PIPELINE_VERSION': u'1.17.21.3', u'END_TYPE': u'SINGLE_READ', u'FLOW_CELL_SEQUENCED_ON': u'2014-01-27 13:15:07 +0100', u'INDEXREAD2': u'0', u'SBS_KIT': u'TruSeq SBS Kit v3', u'FLOWCELLTYPE': u'HiSeq Flow Cell v3', u'SEQUENCER': u'SN792', u'TILECOUNT': u'16', u'LANECOUNT': u'8', 'Name': u'140127_SN792_0312_AC36DWACXX', u'SEQUENCER_RUN_TIME': u'7.768', u'CYCLES_REQUESTED_BY_CUSTOMER': u'151', u'INDEXREAD': u'7', u'SWATHCOUNT': u'3', u'SURFACECOUNT': u'2', 'Project': u'2014.01'}
+ self.configMap = {'illuminaFlowCellTypeName':'ILLUMINA_FLOW_CELL', 'facilityName':'Quantitative Genomics Facility', 'index1Length':'INDEXREAD', 'clusterCountNumber':'50000000', 'connectionTimeout':60000, 'facilityInstitution':'ETHZ_D-BSSE', 'index1Name':'BARCODE', 'configureBclToFastqPath':'/usr/local/bin/configureBclToFastq.pl', 'smptHost':'smtp0.ethz.ch', 'miSeqApplication':'FASTQ Only', 'ncbi':'NCBI_ORGANISM_TAXONOMY', 'failedReads':'--with-failed-reads', 'nexteraAdapter':'Adapter,CTGTCTCTTATACACATCT', 'cycles':'CYCLES_REQUESTED_BY_CUSTOMER', 'miSeqChemistry':'Default', 'outputDir':'--output-dir', 'openbisUserName':'tracker', 'miSeqWorkflow':'GenerateFASTQ', 'openbisPassword':"*hsh8Fs['h9#$%^&", 'index2Length':'INDEXREAD2', 'mailFrom':'SampleSheetCreator@miseq.bsse.ethz.ch', 'hiSeqHeader':'FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject', 'externalSampleName':'EXTERNAL_SAMPLE_NAME', 'SampleSheetFileName':'SampleSheet', 'clusterCount':'--fastq-cluster-count', 'index2Name':'INDEX2', 'mailList':'manuel.kohler@bsse.ethz.ch', 'miSeqNames':'M00721 M00100', 'endType':'END_TYPE', 'miSeqSettingsSection':'[Settings], Adapter', 'facilityNameShort':'QGF', 'baseMask':'--use-bases-mask', 'miSeqReadsSection':'[Reads]', 'laneCount':'LANECOUNT', 'openbisServer':'http://openbis-dsu.bsse.ethz.ch:8080', 'iemFileVersion':'4', 'miSeqHeaderSection':'[Header], IEMFileVersion, Investigator Name, Project Name,Experiment Name, Date, Workflow, Application, Assay, Description, Chemistry', 'controlLane':'CONTROL_LANE', 'indexSeparator':'-', 'separator':',', 'hiSeqNames':'SN792 SN100', 'sampleSheetName':'--sample-sheet'}
- self.samplesPerLaneDict = {u'8': 2, u'1': 2, u'7': 2, u'5': 3, u'2': 2, u'6': 2, u'3': 2, u'4': 2}
+ self.flowCellDict = {u'CONTROL_LANE':u'5', u'RUNNINGTIME':u'7 days, 18:25:19', u'SEQUENCER_FINISHED':u'2014-02-04 07:40:26 +0100', u'ILLUMINA_PIPELINE_VERSION':u'1.17.21.3', u'END_TYPE':u'SINGLE_READ', u'FLOW_CELL_SEQUENCED_ON':u'2014-01-27 13:15:07 +0100', u'INDEXREAD2':u'0', u'SBS_KIT':u'TruSeq SBS Kit v3', u'FLOWCELLTYPE':u'HiSeq Flow Cell v3', u'SEQUENCER':u'SN792', u'TILECOUNT':u'16', u'LANECOUNT':u'8', 'Name':u'140127_SN792_0312_AC36DWACXX', u'SEQUENCER_RUN_TIME':u'7.768', u'CYCLES_REQUESTED_BY_CUSTOMER':u'151', u'INDEXREAD':u'7', u'SWATHCOUNT':u'3', u'SURFACECOUNT':u'2', 'Project':u'2014.01'}
+ self.parentDict = {u'BSSE_QGF_16252_140127_SN792_0312_AC36DWACXX_2':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'402', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 19.0', u'FLOW_CELL_PROPERTIES':u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA':u'10.1', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'1', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:2', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 38.65', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_34', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ':u' 17.9', u'KIT':u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.0', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 2.1'}, u'BSSE_QGF_16256_140127_SN792_0312_AC36DWACXX_7':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'363', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 19.0', u'FLOW_CELL_PROPERTIES':u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA':u'9.1', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'1', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:7', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 38.57', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_38', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ':u' 17.9', u'KIT':u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.0', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 2.1'}, u'BSSE_QGF_19990_140127_SN792_0312_AC36DWACXX_5':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'KIT_PREPARED':u'2013-12-09 12:00:00 +0100', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'2', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'OK', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:5', u'PREPARED_BY':u'Ina', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'DNA_CONCENTRATION_OF_LIBRARY':u'2', u'EXTERNAL_SAMPLE_NAME':u'Pool201_293', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-05 12:00:00 +0100', u'KIT':u'NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1', u'UL_EB_MISEQ':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u'0', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_6':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:6', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16253_140127_SN792_0312_AC36DWACXX_3':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'383', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 18.5', u'FLOW_CELL_PROPERTIES':u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA':u'6.5', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'1', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:3', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 26.11', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_35', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ':u' 16.9', u'KIT':u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.5', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 3.1'}, u'BSSE_QGF_16254_140127_SN792_0312_AC36DWACXX_4':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'385', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 19.0', u'FLOW_CELL_PROPERTIES':u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA':u'9.9', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'1', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:4', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 39.56', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_36', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ':u' 18.0', u'KIT':u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.0', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 2.0'}, u'BSSE_QGF_19989_140127_SN792_0312_AC36DWACXX_5':{u'QC_AT_DBSSE':u'false', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'581', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 48.4', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CONCENTRATION_PREPARED_ILLUMINA':u'23.4', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG':u'2000', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'KIT_PREPARED':u'2013-12-09 12:00:00 +0100', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'2', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'END_TYPE':u'SINGLE_READ', u'BARCODE':u'GTGAAAC', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:5', u'PREPARED_BY':u'Ina', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'NM_DNA':u' 61.96', u'CONCENTRATION_ORIGINAL_ILLUMINA':u'38.3', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'EXTERNAL_SAMPLE_NAME':u'293', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-05 12:00:00 +0100', u'UL_EB_MISEQ':u' 46.8', u'KIT':u'NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.6', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_STOCK':u'50', u'UL_DNA_MISEQ':u' 3.2'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_7':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:7', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_8':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:8', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_2':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:2', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16251_140127_SN792_0312_AC36DWACXX_1':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'375', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 19.0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CONCENTRATION_PREPARED_ILLUMINA':u'9.5', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'3', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CREATED_ON_CS':u'2014-01-08 12:00:00 +0100', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:1', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 38.97', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'15% Phix spike-in, this pool as test on SR50 first', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_33', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'UL_EB_MISEQ':u' 17.9', u'KIT':u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.0', u'NUMBER_OF_ATTACHMENTS':u'1', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 2.1'}, u'BSSE_QGF_19988_140127_SN792_0312_AC36DWACXX_5':{u'QC_AT_DBSSE':u'false', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'564', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 48.9', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CONCENTRATION_PREPARED_ILLUMINA':u'33.3', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG':u'2000', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'KIT_PREPARED':u'2013-12-09 12:00:00 +0100', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'2', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'END_TYPE':u'SINGLE_READ', u'BARCODE':u'ACAGTGA', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:5', u'PREPARED_BY':u'Ina', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'NM_DNA':u' 90.83', u'CONCENTRATION_ORIGINAL_ILLUMINA':u'58.2', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'EXTERNAL_SAMPLE_NAME':u'201', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-05 12:00:00 +0100', u'UL_EB_MISEQ':u' 47.8', u'KIT':u'NEBNEXT_DNA_SAMPLE_PREP_MASTER_MIX_SET1', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.1', u'NUMBER_OF_ATTACHMENTS':u'1', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_STOCK':u'50', u'UL_DNA_MISEQ':u' 2.2'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_3':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:3', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16255_140127_SN792_0312_AC36DWACXX_6':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'373', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 19.2', u'FLOW_CELL_PROPERTIES':u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA':u'12.2', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'1', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:6', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 50.32', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_37', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'KIT':u'NONE', u'UL_EB_MISEQ':u' 18.4', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 0.8', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 1.6'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_4':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:4', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_1':{u'QC_AT_DBSSE':u'false', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u'0', u'FLOW_CELL_PROPERTIES':u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'24', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'ina.nissen@bsse.ethz.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:1', u'LOT':u'9306315', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Ina Nissen', u'NM_DNA':u'0', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'PRINCIPAL_INVESTIGATOR_NAME':u'Christian Beisel', u'AFFILIATION':u'OTHER', u'EXTERNAL_SAMPLE_NAME':u'PhiX', u'KIT':u'NONE', u'UL_EB_MISEQ':u'0', u'UL_DNA':u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS':u'0', u'SAMPLE_KIND':u'GENOMIC_DNA', u'UL_DNA_MISEQ':u'0'}, u'BSSE_QGF_16257_140127_SN792_0312_AC36DWACXX_8':{u'QC_AT_DBSSE':u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA':u'361', u'UNIQUE_BARCODES':u'OK', u'UL_EB':u' 19.0', u'FLOW_CELL_PROPERTIES':u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 151\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA':u'9.6', u'CELL_PLASTICITY_SYSTEMSX':u'false', u'NCBI_ORGANISM_TAXONOMY':u'481459', u'CONCENTRATION_FLOWLANE':u'12', u'LIBRARY_PROCESSING_SUCCESSFUL':u'false', u'HOW_OFTEN_SEQUENCED':u'1', u'CYCLES':u'157', u'BAREBACKED':u'false', u'SEQUENCING_APPLICATION':u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION':u'CBOT', u'END_TYPE':u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER':u'No Pool', u'CONTACT_PERSON_EMAIL':u'marius.roesti@unibas.ch', u'INVOICE':u'false', 'LANE':u'140127_SN792_0312_AC36DWACXX:8', u'CLUSTER_GENERATION_KIT_VERSION':u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY':u'Marius', u'LIBRARY_PROCESSING_FAILED':u'false', u'CONTACT_PERSON_NAME':u'Marius R\xf6sti', u'REQUIRED_LANES':u'1', u'NM_DNA':u' 40.91', u'CYCLES_REQUESTED_BY_CUSTOMER':u'150', u'LIBRARY_PROCESSING_POSSIBLE':u'false', u'NOTES':u'10-15% Phix spike-in', u'PRINCIPAL_INVESTIGATOR_NAME':u'Walter Salzburger', u'NANO_DROP':u'CONCND3300', u'AFFILIATION':u'UNIVERSITY_BASEL', u'SBS_SEQUENCING_KIT_VERSION':u'SBS_HS_V3', u'EXTERNAL_SAMPLE_NAME':u'Ga_lib_39', u'BIOLOGICAL_SAMPLE_ARRIVED':u'2013-12-06 12:00:00 +0100', u'KIT':u'NONE', u'UL_EB_MISEQ':u' 18.0', u'PRINCIPAL_INVESTIGATOR_EMAIL':u'walter.salzburger@unibas.ch', u'UL_DNA':u' 1.0', u'NUMBER_OF_ATTACHMENTS':u'1', u'SAMPLE_KIND':u'FRAGMENTED_GENOMIC_DNA', u'CS_PROTOCOL_VERSION':u'v8', u'UL_STOCK':u'20', u'UL_DNA_MISEQ':u' 2.0'}}
+ self.samplesPerLaneDict = {u'8':2, u'1':2, u'7':2, u'5':3, u'2':2, u'6':2, u'3':2, u'4':2}
self.flowCellName = 'C36DWACXX'
- self.configMap = {'illuminaFlowCellTypeName': 'ILLUMINA_FLOW_CELL', 'facilityName': 'Quantitative Genomics Facility', 'index1Length': 'INDEXREAD', 'clusterCountNumber': '50000000', 'connectionTimeout': 60000, 'facilityInstitution': 'ETHZ_D-BSSE', 'index1Name': 'BARCODE', 'configureBclToFastqPath': '/usr/local/bin/configureBclToFastq.pl', 'smptHost': 'smtp0.ethz.ch', 'miSeqApplication': 'FASTQ Only', 'ncbi': 'NCBI_ORGANISM_TAXONOMY', 'failedReads': '--with-failed-reads', 'nexteraAdapter': 'Adapter,CTGTCTCTTATACACATCT', 'cycles': 'CYCLES_REQUESTED_BY_CUSTOMER', 'miSeqChemistry': 'Default', 'outputDir': '--output-dir', 'openbisUserName': 'tracker', 'miSeqWorkflow': 'GenerateFASTQ', 'openbisPassword': "*hsh8Fs['h9#$%^&", 'index2Length': 'INDEXREAD2', 'mailFrom': 'SampleSheetCreator@miseq.bsse.ethz.ch', 'hiSeqHeader': 'FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject', 'externalSampleName': 'EXTERNAL_SAMPLE_NAME', 'SampleSheetFileName': 'SampleSheet', 'clusterCount': '--fastq-cluster-count', 'index2Name': 'INDEX2', 'mailList': 'manuel.kohler@bsse.ethz.ch', 'miSeqNames': 'M00721 M00100', 'endType': 'END_TYPE', 'miSeqSettingsSection': '[Settings], Adapter', 'facilityNameShort': 'QGF', 'baseMask': '--use-bases-mask', 'miSeqReadsSection': '[Reads]', 'laneCount': 'LANECOUNT', 'openbisServer': 'http://openbis-dsu.bsse.ethz.ch:8080', 'iemFileVersion': '4', 'miSeqHeaderSection': '[Header], IEMFileVersion, Investigator Name, Project Name,Experiment Name, Date, Workflow, Application, Assay, Description, Chemistry', 'controlLane': 'CONTROL_LANE', 'indexSeparator': '-', 'separator': ',', 'hiSeqNames': 'SN792 SN100', 'sampleSheetName': '--sample-sheet'}
-
-
- # is there a more elegant way to mock parser object, except the v3.3 unitest.mock object library?
- self.parser = OptionParser()
- self.parser.add_option('--verbose', dest = 'verbose')
- self.parser.add_option('--lineending', dest = 'lineending')
- self.parser.add_option('--maillist', dest = 'maillist')
- self.parser.add_option('--singlelane', dest = 'singlelane')
- self.parser.add_option('--flowcell', dest = 'flowcell')
- self.parser.add_option('--outdir', dest = 'outdir')
- self.parser.add_option('--debug', dest = 'debug')
-
- self.parser.verbose = False
- self.parser.lineending = 'linux'
- self.parser.maillist = False
- self.parser.singlelane = False
- self.parser.flowcell = '140127_SN792_0312_AC36DWACXX'
- self.parser.outdir = './'
- self.parser.debug = True
+ self.flowCellDict2 = {u'RUNNINGTIME': u'1 day, 16:14:28', u'SEQUENCER_FINISHED': u'2014-02-21 06:23:44 +0100', u'ILLUMINA_PIPELINE_VERSION': u'1.18.42', u'END_TYPE': u'PAIRED_END', u'FLOW_CELL_SEQUENCED_ON': u'2014-02-19 14:09:16 +0100', u'INDEXREAD2': u'8', u'SBS_KIT': u'MS2048060-500V2', u'SEQUENCER': u'M01761', u'TILECOUNT': u'14', u'LANECOUNT': u'1', 'Name': u'140219_M01761_0057_000000000-A825W', u'SEQUENCER_RUN_TIME': u'1.677', u'CYCLES_REQUESTED_BY_CUSTOMER': u'251', u'INDEXREAD': u'8', u'SWATHCOUNT': u'1', u'SURFACECOUNT': u'2', 'Project': u'2014.02'}
+ self.parentDict2 = {u'BSSE_QGF_20267_140219_M01761_0057_000000000_A825W_1': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'AFFILIATION': u'UNIVERSITY_BASEL', u'EXTERNAL_SAMPLE_NAME': u'PAL MiSeq 22', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2014-02-14 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_14958_140219_M01761_0057_000000000_A825W_1': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'32', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'BSSE', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'UL_EB_MISEQ': u'0', u'KIT': u'NONE', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20261_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'TATCCTCT', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CTCTCTAC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01665', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20260_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'CTCTCTAT', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'TAGGCATG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01664', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20256_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'ACTGCATA', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CGTACTAG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01660', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20257_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'AAGGAGTA', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'AGGCAGAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01661', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20255_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'GTAAGGAG', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'TAAGGCGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01659', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20266_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'CTAAGCCT', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GTAGAGGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01670', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20258_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'CTAAGCCT', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'TCCTGAGC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01662', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20265_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'AAGGAGTA', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'AAGAGGCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01669', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20262_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'AGAGTAGA', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CAGAGAGG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01666', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20264_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'ACTGCATA', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CGAGGCTG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01668', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20259_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'TAGATCGC', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GGACTCCT', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01663', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20263_140219_M01761_0057_000000000_A825W_1': {u'HOW_OFTEN_SEQUENCED': u'1', u'INDEX2': u'ACTGCATA', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.18.42\nSequencer : QGF MiSeq (Yoda)\nRun type: PAIRED_END\nNumber of cycles: 251\n\nKit : MS2048060-500V2', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GCTACGCT', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Julia.Feldmann@unibas.ch', u'INVOICE': u'false', 'LANE': u'140219_M01761_0057_000000000-A825W:1', u'NCBI_ORGANISM_TAXONOMY': u'1773', u'EXTERNAL_SAMPLE_NAME': u'G01667', u'CONTACT_PERSON_NAME': u'Julia Feldmann', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'Sebastien.Gagneux@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Sebastien Gagneux', u'SAMPLE_KIND': u'GENOMIC_DNA', u'AFFILIATION': u'UNIVERSITY_BASEL', u'UL_DNA_MISEQ': u'0'}}
+ self.samplesPerLaneDict2 = {u'1': 14}
+ self.flowCellName2 = '000000000-A825W'
+
+ self.flowCellDict3 = {u'CONTROL_LANE': u'5', u'RUNNINGTIME': u'2 days, 11:29:33', u'SEQUENCER_FINISHED': u'2014-01-26 23:07:19 +0100', u'ILLUMINA_PIPELINE_VERSION': u'1.17.21.3', u'END_TYPE': u'SINGLE_READ', u'FLOW_CELL_SEQUENCED_ON': u'2014-01-24 11:37:46 +0100', u'INDEXREAD2': u'0', u'SBS_KIT': u'TruSeq SBS Kit v3', u'FLOWCELLTYPE': u'HiSeq Flow Cell v3', u'SEQUENCER': u'SN792', u'TILECOUNT': u'16', u'LANECOUNT': u'8', 'Name': u'140124_SN792_0311_AC36GVACXX', u'SEQUENCER_RUN_TIME': u'2.479', u'CYCLES_REQUESTED_BY_CUSTOMER': u'51', u'INDEXREAD': u'7', u'SWATHCOUNT': u'3', u'SURFACECOUNT': u'2', 'Project': u'2014.01'}
+ self.parentDict3 = {u'BSSE_QGF_20024_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CAAAAG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'14_G12.336 TA1', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20015_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'ACAGTGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'5_G08.792 NO', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19937_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'160', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 2.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.26', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'AGTTCCG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'24_fox-1 asd-1 3', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' -6.0', u'NM_DNA': u' 2.50', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 8.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 16.0'}, u'BSSE_QGF_19928_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'159', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'2.1', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'TTAGGCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'15_wt (N2) 3 (OLD)', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 16.1', u'NM_DNA': u' 20.32', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 2.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 3.9'}, u'BSSE_QGF_20029_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'870', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.3', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'13.7', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE': u'GATCAGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u' 24.23', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'2_Dcar_Grengiols', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'UL_EB_MISEQ': u' 16.7', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u' 1.7', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 3.3'}, u'BSSE_QGF_20030_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'903', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.3', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'13.9', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE': u'GTGGCCT', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u' 23.68', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'3_Dcar_Gibidumsee', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 16.6', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u' 1.7', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 3.4'}, u'BSSE_QGF_20025_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GAAACC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'15_G12.336 TA2', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19914_140124_SN792_0311_AC36GVACXX_2': {u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.4', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'CGATGTA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'2_wt L2', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19956_140124_SN792_0311_AC36GVACXX_7': {u'QC_AT_DBSSE': u'false', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'189', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'CONCENTRATION_FLOWLANE': u'13', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'2', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CREATED_ON_CS': u'2014-01-23 12:00:00 +0100', u'CONTACT_PERSON_EMAIL': u'arnau.vinavilaseca@unibas.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:7', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Arnau', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Arnau Vina Vilaseca', u'REQUIRED_LANES': u'2', u'NM_DNA': u'0', u'CYCLES_REQUESTED_BY_CUSTOMER': u'58', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mihaela Zavolan', u'NANO_DROP': u'CONCND3300', u'BARCODES': u'these are 12 samples pooled together with the True seq universal adaptor and personal internal barcode\n\nthe samples should run in two lanes.\n\nlet me know if any questions\n\nArnau', u'AFFILIATION': u'BIOCENTER_BASEL', u'EXTERNAL_SAMPLE_NAME': u'Ina-PseudoUridination', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2014-01-13 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mihaela.zavolan@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'2', u'CS_PROTOCOL_VERSION': u'v8', u'SAMPLE_KIND': u'SMALL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20039_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'ACAGTGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'22Ab', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20017_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CAGATCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'7_G09.245 TA1', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20013_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'TTAGGCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'3_G11.806 TA2', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19924_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'159', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 3.1', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.3', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'AGTTCCG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'12_Q L3', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' -3.8', u'NM_DNA': u' 2.90', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 6.9', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 13.8'}, u'BSSE_QGF_19934_140124_SN792_0311_AC36GVACXX_3': {u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'GGCTACA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'21_fox-1 3', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20042_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'CTTGTAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'26Ny', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20033_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'775', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.6', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'14.8', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE': u'ATTCCTA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u' 29.38', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'6_Dcar_Niedergampel', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 17.3', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u' 1.4', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 2.7'}, u'BSSE_QGF_20041_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'CAGATCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'16Ny', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20016_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GCCAATA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'6_G09.245 NO', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20020_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'TAGCTTA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'10_G11.838 TA2', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_16028_140124_SN792_0311_AC36GVACXX_5': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'10847', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'24', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'ina.nissen@bsse.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:5', u'LOT': u'9306315', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Ina Nissen', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Christian Beisel', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'PhiX', u'UL_EB_MISEQ': u'0', u'KIT': u'NONE', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'christian.beisel@bsse.ethz.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20018_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'1000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'ACTTGAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'8_G11.838 NO', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19956_140124_SN792_0311_AC36GVACXX_6': {u'QC_AT_DBSSE': u'false', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'189', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'CONCENTRATION_FLOWLANE': u'13', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'2', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CREATED_ON_CS': u'2014-01-23 12:00:00 +0100', u'CONTACT_PERSON_EMAIL': u'arnau.vinavilaseca@unibas.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:6', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Arnau', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Arnau Vina Vilaseca', u'REQUIRED_LANES': u'2', u'NM_DNA': u'0', u'CYCLES_REQUESTED_BY_CUSTOMER': u'58', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mihaela Zavolan', u'NANO_DROP': u'CONCND3300', u'BARCODES': u'these are 12 samples pooled together with the True seq universal adaptor and personal internal barcode\n\nthe samples should run in two lanes.\n\nlet me know if any questions\n\nArnau', u'AFFILIATION': u'BIOCENTER_BASEL', u'EXTERNAL_SAMPLE_NAME': u'Ina-PseudoUridination', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2014-01-13 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mihaela.zavolan@unibas.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'2', u'CS_PROTOCOL_VERSION': u'v8', u'SAMPLE_KIND': u'SMALL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19930_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'147', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.7', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'2.84', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'ACAGTGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'17_asd-1 2 (OLD)', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 17.3', u'NM_DNA': u' 29.72', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.3', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 2.7'}, u'BSSE_QGF_20012_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'CGATGTA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'2_G11.806 TA1', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19923_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'161', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 6.2', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.55', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'AGTCAAC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'11_Q L2', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 2.4', u'NM_DNA': u' 5.26', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 3.8', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 7.6'}, u'BSSE_QGF_20043_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'AGTCAAC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'14Ny', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19929_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'153', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'3.9', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'TGACCAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'16_asd-1 1 (OLD)', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 18.0', u'NM_DNA': u' 39.22', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 2.0'}, u'BSSE_QGF_19919_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'162', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.1', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'4.89', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'CAGATCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'7_58 80 L1', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 18.3', u'NM_DNA': u' 46.44', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 0.9', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 1.7'}, u'BSSE_QGF_19925_140124_SN792_0311_AC36GVACXX_2': {u'QC_AT_DBSSE': u'true', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CREATED_ON_CS': u'2014-01-23 12:00:00 +0100', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'PREPARED_BY': u'Deni', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'REQUIRED_LANES': u'1', u'NM_DNA': u'0', u'CYCLES_REQUESTED_BY_CUSTOMER': u'58', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'DNA_CONCENTRATION_OF_LIBRARY': u'2', u'EXTERNAL_SAMPLE_NAME': u'Pool 1(1-12)', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-17 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'8', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'CS_PROTOCOL_VERSION': u'v8', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19935_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'162', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 7.9', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'1.01', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'CTTGTAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'22_fox-1 asd-1 1', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 5.8', u'NM_DNA': u' 9.59', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 2.1', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 4.2'}, u'BSSE_QGF_20037_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'CGATGTA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'14An', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20044_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'AGTTCCG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'37Ny', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20019_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'1000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GATCAGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'9_G11.838 TA1', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19926_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'160', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 5.8', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.49', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'ATCACGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'13_wt (N2) 1 (OLD)', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 1.5', u'NM_DNA': u' 4.71', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 4.2', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 8.5'}, u'BSSE_QGF_20021_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'1000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'GGCTACA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'11_G09.258 NO', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19936_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'163', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 5.8', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.5', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'AGTCAAC', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'23_fox-1 asd-1 2', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 1.5', u'NM_DNA': u' 4.72', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 4.2', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 8.5'}, u'BSSE_QGF_20040_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'GCCAATA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'37Br', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19938_140124_SN792_0311_AC36GVACXX_3': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CREATED_ON_CS': u'2014-01-23 12:00:00 +0100', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Deni', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'DNA_CONCENTRATION_OF_LIBRARY': u'2', u'EXTERNAL_SAMPLE_NAME': u'Pool 2 (13-24)', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-17 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'NONE', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'CS_PROTOCOL_VERSION': u'v8', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20026_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'CONCENTRATION_FLOWLANE': u'12', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'CLUSTER_STATION': u'CBOT', u'END_TYPE': u'SINGLE_READ', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CREATED_ON_CS': u'2014-01-24 12:00:00 +0100', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'CLUSTER_GENERATION_KIT_VERSION': u'TRUSEQ_CBOT_HS_V3', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'REQUIRED_LANES': u'1', u'NM_DNA': u'0', u'CYCLES_REQUESTED_BY_CUSTOMER': u'50', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'Test', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'Pool_Exome 23.01.14', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'2', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19921_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'200', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.1', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'5.91', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'GGCTACA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'9_58 80 L3', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 18.2', u'NM_DNA': u' 45.46', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 0.9', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 1.8'}, u'BSSE_QGF_20038_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE': u'TGACCAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'16Ab', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20028_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'770', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 17.9', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'9.4', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE': u'TTAGGCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u' 18.78', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'1_Dcar_Unterstalden', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 15.7', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u' 2.1', u'NUMBER_OF_ATTACHMENTS': u'1', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 4.3'}, u'BSSE_QGF_20034_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u'0', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'DNA_CONCENTRATION_OF_LIBRARY': u'2', u'EXTERNAL_SAMPLE_NAME': u'Pool_Set2_Simone', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'1', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19917_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'160', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.6', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'2.9', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'ACAGTGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'5_mir-58 L2', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 17.1', u'NM_DNA': u' 27.88', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.4', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 2.9'}, u'BSSE_QGF_19918_140124_SN792_0311_AC36GVACXX_2': {u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'GCCAATA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'6_mir-58 L3', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20011_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'ATCACGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'1_G11.806 NO', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'UL_EB_MISEQ': u'0', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19915_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'160', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 19.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'3.99', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'TTAGGCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'3_wt L3', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 17.9', u'NM_DNA': u' 38.37', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 2.1'}, u'BSSE_QGF_19916_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'160', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.5', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'2.83', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'TGACCAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'4_mir-58 L1', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 17.1', u'NM_DNA': u' 27.21', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.5', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 2.9'}, u'BSSE_QGF_19932_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'161', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'CAGATCA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'19_fox-1 1', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20031_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'740', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.3', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'11.6', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE': u'GTTTCGG', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u' 24.12', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'4_Dcar_Simplonpass', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 16.7', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u' 1.7', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 3.3'}, u'BSSE_QGF_20014_140124_SN792_0311_AC36GVACXX_4': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Sample got sequenced more than once. Please check the flow lane properties for detailed description!', u'STARTING_AMOUNT_OF_SAMPLE_IN_NG': u'2000', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'4', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'BARCODE': u'TGACCAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'Christine.Fritz@usz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:4', u'PREPARED_BY': u'Ina', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fritz Christine', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Peter Wild', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'4_G08.792 TA1', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-10-29 12:00:00 +0100', u'KIT': u'AGILENT_SURESELECT_ENRICHMENTSYSTEM', u'UL_EB_MISEQ': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'peter.wild@usz.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_20045_140124_SN792_0311_AC36GVACXX_8': {u'QC_AT_DBSSE': u'false', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'27434', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'RNA_SEQ', u'BARCODE_COMPLEXITY_CHECKER': u'OK', u'CONTACT_PERSON_EMAIL': u'minwu@ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:8', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Min Wu', u'NM_DNA': u'0', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'NOTES': u'TruSeq Strande mRNA sample Prep Kit', u'PRINCIPAL_INVESTIGATOR_NAME': u'Mathias K\xf6lliker', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'Pool1_Min Wu_TruSeq Str.', u'UL_EB_MISEQ': u'0', u'UL_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'mathias.koelliker@unibas.ch', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'TOTAL_RNA', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19931_140124_SN792_0311_AC36GVACXX_3': {u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u'0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'GCCAATA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'18_asd-1 3 (OLD)', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u'0', u'NM_DNA': u'0', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u'0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u'0'}, u'BSSE_QGF_19933_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'161', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 8.6', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'1.45', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'ACTTGAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'20_fox-1 2', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 7.1', u'NM_DNA': u' 13.86', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.4', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 2.9'}, u'BSSE_QGF_19913_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'163', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 8.3', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'1.22', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'ATCACGA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'1_wt L1', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 6.5', u'NM_DNA': u' 11.51', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 1.7', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 3.5'}, u'BSSE_QGF_19922_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'163', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 7.8', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.97', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'CTTGTAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'10_Q L1', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 5.6', u'NM_DNA': u' 9.16', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 2.2', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 4.4'}, u'BSSE_QGF_20032_140124_SN792_0311_AC36GVACXX_1': {u'QC_AT_DBSSE': u'true', u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'870', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 18.4', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'13.8', u'CELL_PLASTICITY_SYSTEMSX': u'false', u'NCBI_ORGANISM_TAXONOMY': u'3569', u'LIBRARY_PROCESSING_SUCCESSFUL': u'false', u'HOW_OFTEN_SEQUENCED': u'1', u'BAREBACKED': u'false', u'SEQUENCING_APPLICATION': u'GENOMIC_DNA_SEQ', u'END_TYPE': u'PAIRED_END', u'BARCODE': u'CGTACGT', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'simone.fior@env.ethz.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:1', u'PREPARED_BY': u'Simone', u'LIBRARY_PROCESSING_FAILED': u'false', u'CONTACT_PERSON_NAME': u'Fior Simone', u'NM_DNA': u' 24.40', u'CYCLES_REQUESTED_BY_CUSTOMER': u'100', u'LIBRARY_PROCESSING_POSSIBLE': u'false', u'PRINCIPAL_INVESTIGATOR_NAME': u'Alexander Widmer', u'NANO_DROP': u'CONCND3300', u'AFFILIATION': u'OTHER', u'EXTERNAL_SAMPLE_NAME': u'5_Dcar_Faldumalp', u'BIOLOGICAL_SAMPLE_ARRIVED': u'2013-12-16 12:00:00 +0100', u'KIT': u'NONE', u'UL_EB_MISEQ': u' 16.7', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'alex.widmer@env.ethz.ch', u'UL_DNA': u' 1.6', u'NUMBER_OF_ATTACHMENTS': u'0', u'SAMPLE_KIND': u'GENOMIC_DNA', u'UL_STOCK': u'20', u'UL_DNA_MISEQ': u' 3.3'}, u'BSSE_QGF_19920_140124_SN792_0311_AC36GVACXX_2': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'162', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 16.9', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'1.38', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'ACTTGAA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:2', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'8_58 80 L2', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 13.9', u'NM_DNA': u' 13.11', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 3.1', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'20', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 6.1'}, u'BSSE_QGF_19927_140124_SN792_0311_AC36GVACXX_3': {u'FRAGMENT_SIZE_PREPARED_ILLUMINA': u'160', u'HOW_OFTEN_SEQUENCED': u'1', u'UNIQUE_BARCODES': u'OK', u'UL_EB': u' 6.0', u'FLOW_CELL_PROPERTIES': u'Illumina RTA Version: 1.17.21.3\nSequencer : QGF HiSeq2000 (Rua)\nRun type: SINGLE_READ\nNumber of cycles: 51\nFLOWCELLTYPE: HiSeq Flow Cell v3\nKit : TruSeq SBS Kit v3', u'CONCENTRATION_PREPARED_ILLUMINA': u'0.52', u'SEQUENCING_APPLICATION': u'SMALL_RNA_SEQ', u'BARCODE': u'CGATGTA', u'BARCODE_COMPLEXITY_CHECKER': u'No Pool', u'CONTACT_PERSON_EMAIL': u'deni.subasic@imls.uzh.ch', u'INVOICE': u'false', 'LANE': u'140124_SN792_0311_AC36GVACXX:3', u'NCBI_ORGANISM_TAXONOMY': u'9606', u'EXTERNAL_SAMPLE_NAME': u'14_wt (N2) 2 (OLD)', u'CONTACT_PERSON_NAME': u'Deni Subasic', u'UL_EB_MISEQ': u' 2.0', u'NM_DNA': u' 5.00', u'PRINCIPAL_INVESTIGATOR_EMAIL': u'michael.hengartner@imls.uzh.ch', u'UL_DNA': u' 4.0', u'NUMBER_OF_ATTACHMENTS': u'0', u'PRINCIPAL_INVESTIGATOR_NAME': u'Michael Hengartner', u'SAMPLE_KIND': u'PROCESSED_DNA_LIBRARY', u'UL_STOCK': u'10', u'AFFILIATION': u'OTHER', u'UL_DNA_MISEQ': u' 8.0'}}
+ self.samplesPerLaneDict3 = {u'8': 9, u'1': 7, u'5': 1, u'7': 1, u'2': 13, u'6': 1, u'3': 13, u'4': 14}
+ self.flowCellName3 = 'C36GVACXX'
- def test_createHiseqSampleSheet (self):
+ def test_createHiseqSampleSheet_PhiX_and_NoIndex (self):
+ '''
+ Case1: we have Phix and a non-barcoded sample in the same lane
+ Only one sample is allowed per lane
+ '''
- sampleSheetDict, testFile = sampleSheetFile = createHiseqSampleSheet(self.parentDict, self.flowCellDict,
+ sampleSheetDict1, testFile = sampleSheetFile = createHiseqSampleSheet(self.parentDict, self.flowCellDict,
self.samplesPerLaneDict, self.flowCellName, self.configMap, self.logger, self.parser)
- d1={u'3_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_3': [u'C36DWACXX,3,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_3,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_3'],
- u'5_BSSE_QGF_19988_140127_SN792_0312_AC36DWACXX_5': [u'C36DWACXX,5,BSSE_QGF_19988_140127_SN792_0312_AC36DWACXX_5,481459,ACAGTG,201,Y,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_5'],
- u'!': ['FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject'],
- u'1_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_1': [u'C36DWACXX,1,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_1,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_1'],
- u'4_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_4': [u'C36DWACXX,4,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_4,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_4'],
- u'5_BSSE_QGF_19989_140127_SN792_0312_AC36DWACXX_5': [u'C36DWACXX,5,BSSE_QGF_19989_140127_SN792_0312_AC36DWACXX_5,481459,GTGAAA,293,Y,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_5'],
- u'6_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_6': [u'C36DWACXX,6,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_6,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_6'],
- u'2_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_2': [u'C36DWACXX,2,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_2,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_2'],
- u'7_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_7': [u'C36DWACXX,7,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_7,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_7'],
- u'8_BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_8': [u'C36DWACXX,8,BSSE_QGF_16028_140127_SN792_0312_AC36DWACXX_8,10847, ,PhiX,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_8']}
+ d1 = {u'6_BSSE_QGF_16255_140127_SN792_0312_AC36DWACXX_6': [u'C36DWACXX,6,BSSE_QGF_16255_140127_SN792_0312_AC36DWACXX_6,481459, ,Ga_lib_37,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_6'],
+ u'5_BSSE_QGF_19988_140127_SN792_0312_AC36DWACXX_5': [u'C36DWACXX,5,BSSE_QGF_19988_140127_SN792_0312_AC36DWACXX_5,481459,ACAGTG,201,Y,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_5'],
+ u'!': ['FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject'],
+ u'4_BSSE_QGF_16254_140127_SN792_0312_AC36DWACXX_4': [u'C36DWACXX,4,BSSE_QGF_16254_140127_SN792_0312_AC36DWACXX_4,481459, ,Ga_lib_36,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_4'],
+ u'7_BSSE_QGF_16256_140127_SN792_0312_AC36DWACXX_7': [u'C36DWACXX,7,BSSE_QGF_16256_140127_SN792_0312_AC36DWACXX_7,481459, ,Ga_lib_38,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_7'],
+ u'8_BSSE_QGF_16257_140127_SN792_0312_AC36DWACXX_8': [u'C36DWACXX,8,BSSE_QGF_16257_140127_SN792_0312_AC36DWACXX_8,481459, ,Ga_lib_39,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_8'],
+ u'5_BSSE_QGF_19989_140127_SN792_0312_AC36DWACXX_5': [u'C36DWACXX,5,BSSE_QGF_19989_140127_SN792_0312_AC36DWACXX_5,481459,GTGAAA,293,Y,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_5'],
+ u'1_BSSE_QGF_16251_140127_SN792_0312_AC36DWACXX_1': [u'C36DWACXX,1,BSSE_QGF_16251_140127_SN792_0312_AC36DWACXX_1,481459, ,Ga_lib_33,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_1'],
+ u'2_BSSE_QGF_16252_140127_SN792_0312_AC36DWACXX_2': [u'C36DWACXX,2,BSSE_QGF_16252_140127_SN792_0312_AC36DWACXX_2,481459, ,Ga_lib_34,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_2'],
+ u'3_BSSE_QGF_16253_140127_SN792_0312_AC36DWACXX_3': [u'C36DWACXX,3,BSSE_QGF_16253_140127_SN792_0312_AC36DWACXX_3,481459, ,Ga_lib_35,N,SINGLE_READ_151,ETHZ_D-BSSE,140127_SN792_0312_AC36DWACXX_3']}
+
+ if (sampleSheetDict1 != d1):
+ self.fail("Dictionaries do not match!")
+
+
+ def test_createHiseqSampleSheet_PhiX_plus_Index (self):
+ '''
+ Case2: We have several indexed samples plus a PhiX in the lane
+ '''
+
+ sampleSheetDict2, testFile = sampleSheetFile = createHiseqSampleSheet(self.parentDict2, self.flowCellDict2,
+ self.samplesPerLaneDict2, self.flowCellName2, self.configMap, self.logger, self.parser)
+
+ d2 = {u'1_BSSE_QGF_20262_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20262_140219_M01761_0057_000000000_A825W_1,1773,CAGAGAG-AGAGTAG,G01666,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20258_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20258_140219_M01761_0057_000000000_A825W_1,1773,TCCTGAG-CTAAGCC,G01662,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20255_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20255_140219_M01761_0057_000000000_A825W_1,1773,TAAGGCG-GTAAGGA,G01659,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20259_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20259_140219_M01761_0057_000000000_A825W_1,1773,GGACTCC-TAGATCG,G01663,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20266_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20266_140219_M01761_0057_000000000_A825W_1,1773,GTAGAGG-CTAAGCC,G01670,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'!': ['FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject'],
+ u'1_BSSE_QGF_20263_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20263_140219_M01761_0057_000000000_A825W_1,1773,GCTACGC-ACTGCAT,G01667,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20261_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20261_140219_M01761_0057_000000000_A825W_1,1773,CTCTCTA-TATCCTC,G01665,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20264_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20264_140219_M01761_0057_000000000_A825W_1,1773,CGAGGCT-ACTGCAT,G01668,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20257_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20257_140219_M01761_0057_000000000_A825W_1,1773,AGGCAGA-AAGGAGT,G01661,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20265_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20265_140219_M01761_0057_000000000_A825W_1,1773,AAGAGGC-AAGGAGT,G01669,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20256_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20256_140219_M01761_0057_000000000_A825W_1,1773,CGTACTA-ACTGCAT,G01660,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1'],
+ u'1_BSSE_QGF_20260_140219_M01761_0057_000000000_A825W_1': [u'000000000-A825W,1,BSSE_QGF_20260_140219_M01761_0057_000000000_A825W_1,1773,TAGGCAT-CTCTCTA,G01664,N,PAIRED_END_251,ETHZ_D-BSSE,140219_M01761_0057_000000000_A825W_1']}
- if (sampleSheetDict != d1):
+ if (sampleSheetDict2 != d2):
self.fail("Dictionaries do not match!")
+
+
+ def test_createHiseqSampleSheet_Lane5_PhiX (self):
+ '''
+ Case3: "Normal" use case with Lane #5 as a PhiX Control lane
+ '''
+ sampleSheetDict3, testFile = sampleSheetFile = createHiseqSampleSheet(self.parentDict3, self.flowCellDict3,
+ self.samplesPerLaneDict3, self.flowCellName3, self.configMap, self.logger, self.parser)
+ d3 = {u'4_BSSE_QGF_20018_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20018_140124_SN792_0311_AC36GVACXX_4,9606,ACTTGA,8_G11_838_NO,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'5_BSSE_QGF_16028_140124_SN792_0311_AC36GVACXX_5': [u'C36GVACXX,5,BSSE_QGF_16028_140124_SN792_0311_AC36GVACXX_5,10847, ,PhiX,Y,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_5'],
+ u'4_BSSE_QGF_20014_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20014_140124_SN792_0311_AC36GVACXX_4,9606,TGACCA,4_G08_792_TA1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'3_BSSE_QGF_19933_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19933_140124_SN792_0311_AC36GVACXX_3,9606,ACTTGA,20_fox_1_2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'8_BSSE_QGF_20041_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20041_140124_SN792_0311_AC36GVACXX_8,27434,CAGATC,16Ny,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'6_BSSE_QGF_19956_140124_SN792_0311_AC36GVACXX_6': [u'C36GVACXX,6,BSSE_QGF_19956_140124_SN792_0311_AC36GVACXX_6,9606, ,Ina_PseudoUridination,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_6'],
+ u'2_BSSE_QGF_19918_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19918_140124_SN792_0311_AC36GVACXX_2,9606,GCCAAT,6_mir_58_L3,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'2_BSSE_QGF_19916_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19916_140124_SN792_0311_AC36GVACXX_2,9606,TGACCA,4_mir_58_L1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'3_BSSE_QGF_19927_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19927_140124_SN792_0311_AC36GVACXX_3,9606,CGATGT,14_wt_N2_2_OLD_,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'2_BSSE_QGF_19913_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19913_140124_SN792_0311_AC36GVACXX_2,9606,ATCACG,1_wt_L1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'3_BSSE_QGF_19929_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19929_140124_SN792_0311_AC36GVACXX_3,9606,TGACCA,16_asd_1_1_OLD_,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'8_BSSE_QGF_20037_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20037_140124_SN792_0311_AC36GVACXX_8,27434,CGATGT,14An,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'4_BSSE_QGF_20025_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20025_140124_SN792_0311_AC36GVACXX_4,9606,GAAACC,15_G12_336_TA2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'4_BSSE_QGF_20020_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20020_140124_SN792_0311_AC36GVACXX_4,9606,TAGCTT,10_G11_838_TA2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'4_BSSE_QGF_20016_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20016_140124_SN792_0311_AC36GVACXX_4,9606,GCCAAT,6_G09_245_NO,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'7_BSSE_QGF_19956_140124_SN792_0311_AC36GVACXX_7': [u'C36GVACXX,7,BSSE_QGF_19956_140124_SN792_0311_AC36GVACXX_7,9606, ,Ina_PseudoUridination,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_7'],
+ u'2_BSSE_QGF_19922_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19922_140124_SN792_0311_AC36GVACXX_2,9606,CTTGTA,10_Q_L1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'1_BSSE_QGF_20033_140124_SN792_0311_AC36GVACXX_1': [u'C36GVACXX,1,BSSE_QGF_20033_140124_SN792_0311_AC36GVACXX_1,3569,ATTCCT,6_Dcar_Niedergampel,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_1'],
+ u'4_BSSE_QGF_20017_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20017_140124_SN792_0311_AC36GVACXX_4,9606,CAGATC,7_G09_245_TA1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'1_BSSE_QGF_20030_140124_SN792_0311_AC36GVACXX_1': [u'C36GVACXX,1,BSSE_QGF_20030_140124_SN792_0311_AC36GVACXX_1,3569,GTGGCC,3_Dcar_Gibidumsee,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_1'],
+ u'8_BSSE_QGF_20043_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20043_140124_SN792_0311_AC36GVACXX_8,27434,AGTCAA,14Ny,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'3_BSSE_QGF_19926_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19926_140124_SN792_0311_AC36GVACXX_3,9606,ATCACG,13_wt_N2_1_OLD_,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'1_BSSE_QGF_20029_140124_SN792_0311_AC36GVACXX_1': [u'C36GVACXX,1,BSSE_QGF_20029_140124_SN792_0311_AC36GVACXX_1,3569,GATCAG,2_Dcar_Grengiols,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_1'],
+ u'3_BSSE_QGF_19936_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19936_140124_SN792_0311_AC36GVACXX_3,9606,AGTCAA,23_fox_1_asd_1_2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'3_BSSE_QGF_19935_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19935_140124_SN792_0311_AC36GVACXX_3,9606,CTTGTA,22_fox_1_asd_1_1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'2_BSSE_QGF_19921_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19921_140124_SN792_0311_AC36GVACXX_2,9606,GGCTAC,9_58_80_L3,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'8_BSSE_QGF_20038_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20038_140124_SN792_0311_AC36GVACXX_8,27434,TGACCA,16Ab,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'8_BSSE_QGF_20044_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20044_140124_SN792_0311_AC36GVACXX_8,27434,AGTTCC,37Ny,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'4_BSSE_QGF_20012_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20012_140124_SN792_0311_AC36GVACXX_4,9606,CGATGT,2_G11_806_TA1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'!': ['FCID,Lane,SampleID,SampleRef,Index,Description,Control,Recipe,Operator,SampleProject'],
+ u'2_BSSE_QGF_19919_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19919_140124_SN792_0311_AC36GVACXX_2,9606,CAGATC,7_58_80_L1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'3_BSSE_QGF_19928_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19928_140124_SN792_0311_AC36GVACXX_3,9606,TTAGGC,15_wt_N2_3_OLD_,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'3_BSSE_QGF_19932_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19932_140124_SN792_0311_AC36GVACXX_3,9606,CAGATC,19_fox_1_1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'8_BSSE_QGF_20039_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20039_140124_SN792_0311_AC36GVACXX_8,27434,ACAGTG,22Ab,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'2_BSSE_QGF_19917_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19917_140124_SN792_0311_AC36GVACXX_2,9606,ACAGTG,5_mir_58_L2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'4_BSSE_QGF_20024_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20024_140124_SN792_0311_AC36GVACXX_4,9606,CAAAAG,14_G12_336_TA1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'4_BSSE_QGF_20019_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20019_140124_SN792_0311_AC36GVACXX_4,9606,GATCAG,9_G11_838_TA1,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'1_BSSE_QGF_20031_140124_SN792_0311_AC36GVACXX_1': [u'C36GVACXX,1,BSSE_QGF_20031_140124_SN792_0311_AC36GVACXX_1,3569,GTTTCG,4_Dcar_Simplonpass,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_1'],
+ u'4_BSSE_QGF_20011_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20011_140124_SN792_0311_AC36GVACXX_4,9606,ATCACG,1_G11_806_NO,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'4_BSSE_QGF_20021_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20021_140124_SN792_0311_AC36GVACXX_4,9606,GGCTAC,11_G09_258_NO,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'2_BSSE_QGF_19924_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19924_140124_SN792_0311_AC36GVACXX_2,9606,AGTTCC,12_Q_L3,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'2_BSSE_QGF_19923_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19923_140124_SN792_0311_AC36GVACXX_2,9606,AGTCAA,11_Q_L2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'2_BSSE_QGF_19914_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19914_140124_SN792_0311_AC36GVACXX_2,9606,CGATGT,2_wt_L2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'3_BSSE_QGF_19931_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19931_140124_SN792_0311_AC36GVACXX_3,9606,GCCAAT,18_asd_1_3_OLD_,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'1_BSSE_QGF_20032_140124_SN792_0311_AC36GVACXX_1': [u'C36GVACXX,1,BSSE_QGF_20032_140124_SN792_0311_AC36GVACXX_1,3569,CGTACG,5_Dcar_Faldumalp,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_1'],
+ u'4_BSSE_QGF_20013_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20013_140124_SN792_0311_AC36GVACXX_4,9606,TTAGGC,3_G11_806_TA2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'3_BSSE_QGF_19934_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19934_140124_SN792_0311_AC36GVACXX_3,9606,GGCTAC,21_fox_1_3,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'3_BSSE_QGF_19937_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19937_140124_SN792_0311_AC36GVACXX_3,9606,AGTTCC,24_fox_1_asd_1_3,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'2_BSSE_QGF_19915_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19915_140124_SN792_0311_AC36GVACXX_2,9606,TTAGGC,3_wt_L3,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'4_BSSE_QGF_20015_140124_SN792_0311_AC36GVACXX_4': [u'C36GVACXX,4,BSSE_QGF_20015_140124_SN792_0311_AC36GVACXX_4,9606,ACAGTG,5_G08_792_NO,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_4'],
+ u'2_BSSE_QGF_19920_140124_SN792_0311_AC36GVACXX_2': [u'C36GVACXX,2,BSSE_QGF_19920_140124_SN792_0311_AC36GVACXX_2,9606,ACTTGA,8_58_80_L2,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_2'],
+ u'1_BSSE_QGF_20028_140124_SN792_0311_AC36GVACXX_1': [u'C36GVACXX,1,BSSE_QGF_20028_140124_SN792_0311_AC36GVACXX_1,3569,TTAGGC,1_Dcar_Unterstalden,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_1'],
+ u'8_BSSE_QGF_20040_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20040_140124_SN792_0311_AC36GVACXX_8,27434,GCCAAT,37Br,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8'],
+ u'3_BSSE_QGF_19930_140124_SN792_0311_AC36GVACXX_3': [u'C36GVACXX,3,BSSE_QGF_19930_140124_SN792_0311_AC36GVACXX_3,9606,ACAGTG,17_asd_1_2_OLD_,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_3'],
+ u'8_BSSE_QGF_20042_140124_SN792_0311_AC36GVACXX_8': [u'C36GVACXX,8,BSSE_QGF_20042_140124_SN792_0311_AC36GVACXX_8,27434,CTTGTA,26Ny,N,SINGLE_READ_51,ETHZ_D-BSSE,140124_SN792_0311_AC36GVACXX_8']}
+
+ if (sampleSheetDict3 != d3):
+ self.fail("Dictionaries do not match!")
+
def tearDown(self):
pass
-if __name__ == '__main__':
- unittest.main()
+suite = unittest.TestLoader().loadTestsFromTestCase(TestCreateHiseqSampleSheet)
+unittest.TextTestRunner(verbosity=2).run(suite)
\ No newline at end of file