From 2d0e3ac6862e5f0e113a3cb399d81a20b8fc9cc1 Mon Sep 17 00:00:00 2001
From: juanf <juanf>
Date: Wed, 5 Nov 2014 09:33:34 +0000
Subject: [PATCH] SSDM-1078 : PAPER - Provide sensible defaults -
Implementation
SVN: 32733
---
.../newbrowser/1/as/initialize-master-data.py | 31 +++++++++++++++++++
1 file changed, 31 insertions(+)
diff --git a/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py b/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
index 68a26af72b2..5492a745934 100644
--- a/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
+++ b/plasmid/source/core-plugins/newbrowser/1/as/initialize-master-data.py
@@ -495,3 +495,34 @@ createSampleTypeWithProperties("OLIGO", "", [
["SEQUENC", "Details", "Sequence", DataType.MULTILINE_VARCHAR, None, "Sequence of the oligonucleotide"],
["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
]);
+
+createSampleTypeWithProperties("RNA", "", [
+ ["RNA_NAME", "General", "Name of RNA", DataType.VARCHAR, None, "Name of the RNA: species/number/strand"],
+ ["TARGET", "General", "Target of the RNA", DataType.VARCHAR, None, "Target of the oligonucleotide"],
+ ["TYPE", "General", "Type of RNA", DataType.CONTROLLEDVOCABULARY, "RNA_TYPE", "Type of RNA in terms of function: mimic of RNAi or inhibitor of RNAi"],
+ ["STRAND", "Details", "Strand", DataType.CONTROLLEDVOCABULARY, "STRAND", "Double or single strand RNA"],
+ ["BACKBONE_TYPE", "Details", "Backbone type", DataType.CONTROLLEDVOCABULARY, "RNA_BACKBONE", "Type of backbone, modifications in the backbone"],
+ ["MODIFICATIONS", "Details", "Modifications", DataType.VARCHAR, None, "Modifications of the ordered oligonucleotide"],
+ ["SEQUENCE", "Details", "Sequence", DataType.MULTILINE_VARCHAR, None, "Sequence of the oligonucleotide"],
+ ["SUPPLIER", "Supplier and storage", "Supplier", DataType.MULTILINE_VARCHAR, None, "Supplier of the product"],
+ ["ARTICLE_NUMBER", "Supplier and storage", "Art. Number", DataType.MULTILINE_VARCHAR, None, "Article number of the product"],
+ ["STORAGE", "Supplier and storage", "Storage", DataType.CONTROLLEDVOCABULARY, "STORAGE", "Storage conditions of the product"],
+ ["PUBLICATION", "Comments", "Publication", DataType.MULTILINE_VARCHAR, None, "Publication from where the information was first found OR technical sheet given by the manufacturer"],
+ ["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
+]);
+
+createSampleTypeWithProperties("PLASMID", "", [
+ ["PLASMID_NAME", "General", "Plasmid", DataType.VARCHAR, None, "Plasmid name"],
+ ["OWNER", "General", "Owner", DataType.CONTROLLEDVOCABULARY, "OWNER", "Who produced/owned the sample"],
+ ["OWNER_NUMBER", "General", "Owner number", DataType.MULTILINE_VARCHAR, None, "Owner number"],
+ ["BACKBONE", "Details", "Backbone", DataType.CONTROLLEDVOCABULARY, "BACKBONE", "Backbone of the plasmid"],
+ ["BACTERIAL_ANTIBIOTIC_RESISTANCE", "Details", "Bacterial Antibiotic Resistance", DataType.CONTROLLEDVOCABULARY, "BACTERIAL_ANTIBIOTIC_RESISTANCE", "Bacterial antibiotic resistance"],
+ ["MARKER", "Details", "Marke", DataType.CONTROLLEDVOCABULARY, "MARKER", "Marker to select the strain/cell line after transformation/transfection"],
+ ["OTHER_MARKER", "Details", "Other Marker", DataType.VARCHAR, None, "Other marker useful for selection"],
+ ["FLANKING_RESTRICTION_ENZYMES", "Details", "Flanking Restriction Enzymes", DataType.VARCHAR, None, "Restriction enzymes sites flanking the insert of the plasmid"],
+ ["OLIGOS_TEMPLATE", "Details", "Oligos and template", DataType.MULTILINE_VARCHAR, None, "Oligos and template used to clone the single parts of the plasmid"],
+ ["SOURCE", "Origin", "Source", DataType.VARCHAR, None, "Source from where the construct/strain/cell line obtained or purchased, if it was not produced in the lab"],
+ ["PUBLICATION", "Comments", "Publication", DataType.MULTILINE_VARCHAR, None, "Publication from where the information was first found OR technical sheet given by the manufacturer"],
+ ["NOTES", "Comments", "Notes", DataType.MULTILINE_VARCHAR, None, "Notes"],
+ ["XMLCOMMENTS", "Comments", "Comments List", DataType.XML, None, "Several comments can be added by different users"]
+]);
--
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