From 26f262825e19aa021d5dfd3b5f6d7a8bdc4a9258 Mon Sep 17 00:00:00 2001
From: juanf <juanf>
Date: Wed, 13 Sep 2017 09:54:43 +0000
Subject: [PATCH] SSDM-5582 : New v3 upgrade script
SVN: 38718
---
.../resource/installer/bin/upgrade-eln-v3.sh | 83 +++++++++++++++++++
1 file changed, 83 insertions(+)
create mode 100644 installation/resource/installer/bin/upgrade-eln-v3.sh
diff --git a/installation/resource/installer/bin/upgrade-eln-v3.sh b/installation/resource/installer/bin/upgrade-eln-v3.sh
new file mode 100644
index 00000000000..a4302518a04
--- /dev/null
+++ b/installation/resource/installer/bin/upgrade-eln-v3.sh
@@ -0,0 +1,83 @@
+#!/bin/bash
+# Upgrades openbis ELN-LIMS.
+# Asumes that the eln-lims tarball is on the 'servers' directory
+# Assumes that core-plugins are installed in the 'servers' directory on the same level as this script parent directory
+
+##
+## Upgrade script algorithm explained
+##
+
+#-- If current installation don't exists return with message, no eln-lims installation found, do a normal first installation
+
+#-- If installation exists
+#-- Check if current installation is a minimum master data installation
+#-- Backup etc folder (skip if etc folder don't exist)
+#-- Remove eln-lims folder
+#-- Uncompress eln-lims tarball into the core-plugins folder
+#-- If last installation was minimum master data installation, remove extra eln-lims master data script (skip if wasn't)
+#-- Restore etc folder from backup (skip if backup don't exist)
+
+echo "1 - Starting ELN-LIMS Upgrade"
+
+# Define a timestamp function
+timestamp() {
+ date +"%y%m%d-%H%M"
+}
+
+# Directories used
+DIR="$( cd "$( dirname "${BASH_SOURCE[0]}" )" && pwd )"
+BASE=$DIR"/.."
+BACKUP_BASE=$BASE"/backup"
+BACKUP=$BACKUP_BASE"/$(timestamp)"
+CORE_PLUGINS=$BASE"/servers/core-plugins/"
+ELN_INSTALLATION=$BASE"/servers/core-plugins/eln-lims"
+ELN_INSTALLATION_MINIMUM_MD_SCRIPT=$ELN_INSTALLATION"/3/as/initializemasterdataminimum.py"
+ELN_INSTALLATION_STANDARD_MD_SCRIPT=$ELN_INSTALLATION"/3/as/initialize-master-data.py"
+ELN_ETC_CONFIG_FOLDER=$ELN_INSTALLATION"/3/as/webapps/eln-lims/html/etc/"
+ELN_TARBALL_LOCATION=$BASE"/servers/eln-lims-*.tar.gz";
+ELN_TARBALL="$( ls $ELN_TARBALL_LOCATION )" #The script fails and exits automatically if the tarball is not found
+echo "2 - The ELN-LIMS tarball found to be used is: "$ELN_TARBALL
+
+if [ -d $ELN_INSTALLATION ]; then
+ #Check if is a minimum master data installation
+ if [ -f $ELN_INSTALLATION_MINIMUM_MD_SCRIPT ]; then
+ IS_MINIMUM_MASTER_DATA=false
+ else
+ IS_MINIMUM_MASTER_DATA=true
+ fi
+ echo "3 - Is minimum master data installation: "$IS_MINIMUM_MASTER_DATA
+
+ #Backup ELN-LIMS etc folder
+ if [ -d $ELN_ETC_CONFIG_FOLDER ]; then
+ echo "4 - Backing up ELN-LIMS etc folder at: "$BACKUP
+ #Creating backup folder and its parents if doesn't exist
+ mkdir -p $BACKUP"/eln-lims/3/as/webapps/eln-lims/html/etc/"
+ cp $ELN_ETC_CONFIG_FOLDER* $BACKUP"/eln-lims/3/as/webapps/eln-lims/html/etc/"
+ else
+ echo "4 - ELN-LIMS etc folder was not found, is this installation quite old?"
+ fi
+
+ #Remove ELN-LIMS folder
+ echo "5 - Remove current ELN-LIMS installation"
+ rm -rf $ELN_INSTALLATION
+
+ #Uncompress eln-lims tarball into the eln-lims folder
+ echo "6 - Uncompressing tarball"
+ tar xfz $ELN_TARBALL -C $CORE_PLUGINS
+
+ #if is minimum master data, remove the extra types script
+ if [ IS_MINIMUM_MASTER_DATA ]; then
+ echo "7 - Replacing master data script since minimum master data installation was found"
+ mv $ELN_INSTALLATION_MINIMUM_MD_SCRIPT $ELN_INSTALLATION_STANDARD_MD_SCRIPT
+ else
+ echo "7 - Not modifying master data scripts since a standard master data installation was found"
+ fi
+ #Restore etc folder contents if they where backup
+ if [ -d $BACKUP"/eln-lims/3/as/webapps/eln-lims/html/etc/" ]; then
+ echo "8 - Restoring ELN-LIMS etc folder"
+ cp $BACKUP"/eln-lims/3/as/webapps/eln-lims/html/etc/"* $ELN_ETC_CONFIG_FOLDER
+ fi
+else
+ echo "3 - No ELN-LIMS installation found, at folder \""$ELN_INSTALLATION"\". Do first a normal installation, this script is only for upgrades."
+fi
+echo "9 - ELN-LIMS Upgrade Finished"
\ No newline at end of file
--
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