diff --git a/gradle/settings.gradle b/gradle/settings.gradle
index d29899caeb4c71b923643d854aab75f12db6efb7..9ce1438eb1c85f3c4fef12e89795e39aa92e9280 100644
--- a/gradle/settings.gradle
+++ b/gradle/settings.gradle
@@ -1,5 +1,4 @@
includeFlat 'commonbase', 'common', 'openbis_api', 'openbis-common', 'authentication', 'dbmigration', 'openbis',
- 'datastore_server', 'screening',
- 'openbis_standard_technologies', 'installation', 'image_readers', 'ui-test', 'js-test', 'datamover',
- 'big_data_link_server', 'openbis_ng_ui', 'microservice_server_template',
- 'openbis_statistics_server', 'openbis_benchmark'
\ No newline at end of file
+ 'datastore_server', 'screening', 'openbis_standard_technologies', 'installation',
+ 'image_readers', 'ui-test', 'js-test', 'datamover', 'big_data_link_server', 'openbis_ng_ui',
+ 'microservice_server_template', 'openbis_statistics_server'
\ No newline at end of file
diff --git a/openbis_benchmark/.gitignore b/openbis_benchmark/.gitignore
deleted file mode 100644
index e18173b1bb08e58b11fc2305f927e4f590e153bb..0000000000000000000000000000000000000000
--- a/openbis_benchmark/.gitignore
+++ /dev/null
@@ -1,5 +0,0 @@
-/build/
-/bin/
-/.idea/
-*.iml
-*.eml
\ No newline at end of file
diff --git a/openbis_benchmark/README.md b/openbis_benchmark/README.md
deleted file mode 100644
index 533b2df6312c23fe6aafa6fadc71d5078992ebcf..0000000000000000000000000000000000000000
--- a/openbis_benchmark/README.md
+++ /dev/null
@@ -1,5 +0,0 @@
-# openBIS Benchmark #
-
-## Introduction ##
-
-It benchmarks openBIS, please create a sample type as show in benchmark-sample.png
\ No newline at end of file
diff --git a/openbis_benchmark/build.gradle b/openbis_benchmark/build.gradle
deleted file mode 100644
index d7a1443e9a01e1ac36341f3ac98dc0831aed31f2..0000000000000000000000000000000000000000
--- a/openbis_benchmark/build.gradle
+++ /dev/null
@@ -1,30 +0,0 @@
-apply plugin: 'java'
-apply plugin: 'application'
-
-applicationDefaultJvmArgs = ["-Xms2048m", "-Xmx2048m"]
-
-repositories {
- ivy {
- ivyPattern "https://sissource.ethz.ch/openbis/openbis-public/openbis-ivy/-/raw/main/[organisation]/[module]/[revision]/ivy.xml"
- artifactPattern "https://sissource.ethz.ch/openbis/openbis-public/openbis-ivy/-/raw/main/[organisation]/[module]/[revision]/[artifact]-[revision](-[classifier]).[ext]"
- }
-}
-
-dependencies {
- implementation 'log4j:log4j-api:2.10.0',
- 'log4j:log4j-core:2.10.0',
- 'fasterxml:jackson-annotations:2.0.2',
- 'fasterxml:jackson-core:2.0.2',
- 'fasterxml:jackson-databind:2.0.2',
- 'postgresql:postgresql:42.5.0',
- 'openbis:openbis-v3-api-batteries-included:20.10.1'
-}
-
-mainClassName = "ch.ethz.sis.startup.Main"
-
-distZip {
- into(project.name) {
- from './conf'
- include '*'
- }
-}
\ No newline at end of file
diff --git a/openbis_benchmark/conf/config-dev-load.json b/openbis_benchmark/conf/config-dev-load.json
deleted file mode 100644
index 5d59ea01ec2dffae6b2bc02c7c69639f22b87b2d..0000000000000000000000000000000000000000
--- a/openbis_benchmark/conf/config-dev-load.json
+++ /dev/null
@@ -1,15 +0,0 @@
-[{
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "admin",
- "password" : "changeit",
- "openbisURL" : "http://localhost:8888/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "http://localhost:8888/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "SPACES_TO_CREATE" : 1,
- "SAMPLES_TO_CREATE" : 50000,
- "PROPERTIES_NUMBER" : 50
- }
-}]
\ No newline at end of file
diff --git a/openbis_benchmark/conf/config-dev.json b/openbis_benchmark/conf/config-dev.json
deleted file mode 100644
index 388260b86c0f5fdf7f6630cc9852764aee9dfdfd..0000000000000000000000000000000000000000
--- a/openbis_benchmark/conf/config-dev.json
+++ /dev/null
@@ -1,186 +0,0 @@
-[{
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 5,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 10,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 20,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 50,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 5,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 10,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 20,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 50,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 5,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 10,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 20,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 50,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}]
\ No newline at end of file
diff --git a/openbis_benchmark/config-default.json b/openbis_benchmark/config-default.json
deleted file mode 100644
index 388260b86c0f5fdf7f6630cc9852764aee9dfdfd..0000000000000000000000000000000000000000
--- a/openbis_benchmark/config-default.json
+++ /dev/null
@@ -1,186 +0,0 @@
-[{
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 5,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 10,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 20,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.LoadBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 50,
- "parameters" : {
- "SPACES_TO_CREATE" : 4,
- "SAMPLES_TO_CREATE" : 20000
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 5,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 10,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 20,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.GlobalSearchBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 50,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 1,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 5,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 10,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 20,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}, {
- "className" : "ch.ethz.sis.benchmark.impl.ListBenchmark",
- "user" : "test",
- "password" : "test",
- "openbisURL" : "https://openbis-polyhub.ethz.ch/openbis/openbis/rmi-application-server-v3",
- "openbisTimeout" : "3600000",
- "datastoreURL" : "https://openbis-polyhub.ethz.ch/datastore_server/rmi-data-store-server-v3",
- "datastoreTimeout" : "3600000",
- "threads" : 50,
- "parameters" : {
- "ITERATIONS" : 10
- }
-}]
\ No newline at end of file
diff --git a/openbis_benchmark/gradle/wrapper/gradle-wrapper.jar b/openbis_benchmark/gradle/wrapper/gradle-wrapper.jar
deleted file mode 100644
index 5c2d1cf016b3885f6930543d57b744ea8c220a1a..0000000000000000000000000000000000000000
Binary files a/openbis_benchmark/gradle/wrapper/gradle-wrapper.jar and /dev/null differ
diff --git a/openbis_benchmark/gradle/wrapper/gradle-wrapper.properties b/openbis_benchmark/gradle/wrapper/gradle-wrapper.properties
deleted file mode 100644
index 7745c4ec463c7bb1c4ff6a5e58db239890345152..0000000000000000000000000000000000000000
--- a/openbis_benchmark/gradle/wrapper/gradle-wrapper.properties
+++ /dev/null
@@ -1,5 +0,0 @@
-distributionBase=GRADLE_USER_HOME
-distributionPath=wrapper/dists
-distributionUrl=https\://sissource.ethz.ch/openbis/openbis-public/openbis-ivy/-/raw/main/gradle/distribution/7.4/gradle-7.4-bin.zip
-zipStoreBase=GRADLE_USER_HOME
-zipStorePath=wrapper/dists
diff --git a/openbis_benchmark/gradlew b/openbis_benchmark/gradlew
deleted file mode 100755
index 83f2acfdc319a24e8766cca78f32474ad7a22dd6..0000000000000000000000000000000000000000
--- a/openbis_benchmark/gradlew
+++ /dev/null
@@ -1,188 +0,0 @@
-#!/usr/bin/env sh
-
-#
-# Copyright 2015 the original author or authors.
-#
-# Licensed under the Apache License, Version 2.0 (the "License");
-# you may not use this file except in compliance with the License.
-# You may obtain a copy of the License at
-#
-# https://www.apache.org/licenses/LICENSE-2.0
-#
-# Unless required by applicable law or agreed to in writing, software
-# distributed under the License is distributed on an "AS IS" BASIS,
-# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-# See the License for the specific language governing permissions and
-# limitations under the License.
-#
-
-##############################################################################
-##
-## Gradle start up script for UN*X
-##
-##############################################################################
-
-# Attempt to set APP_HOME
-# Resolve links: $0 may be a link
-PRG="$0"
-# Need this for relative symlinks.
-while [ -h "$PRG" ] ; do
- ls=`ls -ld "$PRG"`
- link=`expr "$ls" : '.*-> \(.*\)$'`
- if expr "$link" : '/.*' > /dev/null; then
- PRG="$link"
- else
- PRG=`dirname "$PRG"`"/$link"
- fi
-done
-SAVED="`pwd`"
-cd "`dirname \"$PRG\"`/" >/dev/null
-APP_HOME="`pwd -P`"
-cd "$SAVED" >/dev/null
-
-APP_NAME="Gradle"
-APP_BASE_NAME=`basename "$0"`
-
-# Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-DEFAULT_JVM_OPTS='"-Xmx64m" "-Xms64m"'
-
-# Use the maximum available, or set MAX_FD != -1 to use that value.
-MAX_FD="maximum"
-
-warn () {
- echo "$*"
-}
-
-die () {
- echo
- echo "$*"
- echo
- exit 1
-}
-
-# OS specific support (must be 'true' or 'false').
-cygwin=false
-msys=false
-darwin=false
-nonstop=false
-case "`uname`" in
- CYGWIN* )
- cygwin=true
- ;;
- Darwin* )
- darwin=true
- ;;
- MINGW* )
- msys=true
- ;;
- NONSTOP* )
- nonstop=true
- ;;
-esac
-
-CLASSPATH=$APP_HOME/gradle/wrapper/gradle-wrapper.jar
-
-# Determine the Java command to use to start the JVM.
-if [ -n "$JAVA_HOME" ] ; then
- if [ -x "$JAVA_HOME/jre/sh/java" ] ; then
- # IBM's JDK on AIX uses strange locations for the executables
- JAVACMD="$JAVA_HOME/jre/sh/java"
- else
- JAVACMD="$JAVA_HOME/bin/java"
- fi
- if [ ! -x "$JAVACMD" ] ; then
- die "ERROR: JAVA_HOME is set to an invalid directory: $JAVA_HOME
-
-Please set the JAVA_HOME variable in your environment to match the
-location of your Java installation."
- fi
-else
- JAVACMD="java"
- which java >/dev/null 2>&1 || die "ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
-
-Please set the JAVA_HOME variable in your environment to match the
-location of your Java installation."
-fi
-
-# Increase the maximum file descriptors if we can.
-if [ "$cygwin" = "false" -a "$darwin" = "false" -a "$nonstop" = "false" ] ; then
- MAX_FD_LIMIT=`ulimit -H -n`
- if [ $? -eq 0 ] ; then
- if [ "$MAX_FD" = "maximum" -o "$MAX_FD" = "max" ] ; then
- MAX_FD="$MAX_FD_LIMIT"
- fi
- ulimit -n $MAX_FD
- if [ $? -ne 0 ] ; then
- warn "Could not set maximum file descriptor limit: $MAX_FD"
- fi
- else
- warn "Could not query maximum file descriptor limit: $MAX_FD_LIMIT"
- fi
-fi
-
-# For Darwin, add options to specify how the application appears in the dock
-if $darwin; then
- GRADLE_OPTS="$GRADLE_OPTS \"-Xdock:name=$APP_NAME\" \"-Xdock:icon=$APP_HOME/media/gradle.icns\""
-fi
-
-# For Cygwin or MSYS, switch paths to Windows format before running java
-if [ "$cygwin" = "true" -o "$msys" = "true" ] ; then
- APP_HOME=`cygpath --path --mixed "$APP_HOME"`
- CLASSPATH=`cygpath --path --mixed "$CLASSPATH"`
- JAVACMD=`cygpath --unix "$JAVACMD"`
-
- # We build the pattern for arguments to be converted via cygpath
- ROOTDIRSRAW=`find -L / -maxdepth 1 -mindepth 1 -type d 2>/dev/null`
- SEP=""
- for dir in $ROOTDIRSRAW ; do
- ROOTDIRS="$ROOTDIRS$SEP$dir"
- SEP="|"
- done
- OURCYGPATTERN="(^($ROOTDIRS))"
- # Add a user-defined pattern to the cygpath arguments
- if [ "$GRADLE_CYGPATTERN" != "" ] ; then
- OURCYGPATTERN="$OURCYGPATTERN|($GRADLE_CYGPATTERN)"
- fi
- # Now convert the arguments - kludge to limit ourselves to /bin/sh
- i=0
- for arg in "$@" ; do
- CHECK=`echo "$arg"|egrep -c "$OURCYGPATTERN" -`
- CHECK2=`echo "$arg"|egrep -c "^-"` ### Determine if an option
-
- if [ $CHECK -ne 0 ] && [ $CHECK2 -eq 0 ] ; then ### Added a condition
- eval `echo args$i`=`cygpath --path --ignore --mixed "$arg"`
- else
- eval `echo args$i`="\"$arg\""
- fi
- i=$((i+1))
- done
- case $i in
- (0) set -- ;;
- (1) set -- "$args0" ;;
- (2) set -- "$args0" "$args1" ;;
- (3) set -- "$args0" "$args1" "$args2" ;;
- (4) set -- "$args0" "$args1" "$args2" "$args3" ;;
- (5) set -- "$args0" "$args1" "$args2" "$args3" "$args4" ;;
- (6) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" ;;
- (7) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" ;;
- (8) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" ;;
- (9) set -- "$args0" "$args1" "$args2" "$args3" "$args4" "$args5" "$args6" "$args7" "$args8" ;;
- esac
-fi
-
-# Escape application args
-save () {
- for i do printf %s\\n "$i" | sed "s/'/'\\\\''/g;1s/^/'/;\$s/\$/' \\\\/" ; done
- echo " "
-}
-APP_ARGS=$(save "$@")
-
-# Collect all arguments for the java command, following the shell quoting and substitution rules
-eval set -- $DEFAULT_JVM_OPTS $JAVA_OPTS $GRADLE_OPTS "\"-Dorg.gradle.appname=$APP_BASE_NAME\"" -classpath "\"$CLASSPATH\"" org.gradle.wrapper.GradleWrapperMain "$APP_ARGS"
-
-# by default we should be in the correct project dir, but when run from Finder on Mac, the cwd is wrong
-if [ "$(uname)" = "Darwin" ] && [ "$HOME" = "$PWD" ]; then
- cd "$(dirname "$0")"
-fi
-
-exec "$JAVACMD" "$@"
diff --git a/openbis_benchmark/gradlew.bat b/openbis_benchmark/gradlew.bat
deleted file mode 100644
index 24467a141f791695fc1009c78d913b2c849d1412..0000000000000000000000000000000000000000
--- a/openbis_benchmark/gradlew.bat
+++ /dev/null
@@ -1,100 +0,0 @@
-@rem
-@rem Copyright 2015 the original author or authors.
-@rem
-@rem Licensed under the Apache License, Version 2.0 (the "License");
-@rem you may not use this file except in compliance with the License.
-@rem You may obtain a copy of the License at
-@rem
-@rem https://www.apache.org/licenses/LICENSE-2.0
-@rem
-@rem Unless required by applicable law or agreed to in writing, software
-@rem distributed under the License is distributed on an "AS IS" BASIS,
-@rem WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
-@rem See the License for the specific language governing permissions and
-@rem limitations under the License.
-@rem
-
-@if "%DEBUG%" == "" @echo off
-@rem ##########################################################################
-@rem
-@rem Gradle startup script for Windows
-@rem
-@rem ##########################################################################
-
-@rem Set local scope for the variables with windows NT shell
-if "%OS%"=="Windows_NT" setlocal
-
-set DIRNAME=%~dp0
-if "%DIRNAME%" == "" set DIRNAME=.
-set APP_BASE_NAME=%~n0
-set APP_HOME=%DIRNAME%
-
-@rem Add default JVM options here. You can also use JAVA_OPTS and GRADLE_OPTS to pass JVM options to this script.
-set DEFAULT_JVM_OPTS="-Xmx64m" "-Xms64m"
-
-@rem Find java.exe
-if defined JAVA_HOME goto findJavaFromJavaHome
-
-set JAVA_EXE=java.exe
-%JAVA_EXE% -version >NUL 2>&1
-if "%ERRORLEVEL%" == "0" goto init
-
-echo.
-echo ERROR: JAVA_HOME is not set and no 'java' command could be found in your PATH.
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
-
-goto fail
-
-:findJavaFromJavaHome
-set JAVA_HOME=%JAVA_HOME:"=%
-set JAVA_EXE=%JAVA_HOME%/bin/java.exe
-
-if exist "%JAVA_EXE%" goto init
-
-echo.
-echo ERROR: JAVA_HOME is set to an invalid directory: %JAVA_HOME%
-echo.
-echo Please set the JAVA_HOME variable in your environment to match the
-echo location of your Java installation.
-
-goto fail
-
-:init
-@rem Get command-line arguments, handling Windows variants
-
-if not "%OS%" == "Windows_NT" goto win9xME_args
-
-:win9xME_args
-@rem Slurp the command line arguments.
-set CMD_LINE_ARGS=
-set _SKIP=2
-
-:win9xME_args_slurp
-if "x%~1" == "x" goto execute
-
-set CMD_LINE_ARGS=%*
-
-:execute
-@rem Setup the command line
-
-set CLASSPATH=%APP_HOME%\gradle\wrapper\gradle-wrapper.jar
-
-@rem Execute Gradle
-"%JAVA_EXE%" %DEFAULT_JVM_OPTS% %JAVA_OPTS% %GRADLE_OPTS% "-Dorg.gradle.appname=%APP_BASE_NAME%" -classpath "%CLASSPATH%" org.gradle.wrapper.GradleWrapperMain %CMD_LINE_ARGS%
-
-:end
-@rem End local scope for the variables with windows NT shell
-if "%ERRORLEVEL%"=="0" goto mainEnd
-
-:fail
-rem Set variable GRADLE_EXIT_CONSOLE if you need the _script_ return code instead of
-rem the _cmd.exe /c_ return code!
-if not "" == "%GRADLE_EXIT_CONSOLE%" exit 1
-exit /b 1
-
-:mainEnd
-if "%OS%"=="Windows_NT" endlocal
-
-:omega
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/Benchmark.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/Benchmark.java
deleted file mode 100644
index c44c3fffcc4b57b2adf5efaf1f0512aeaecab6ee..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/Benchmark.java
+++ /dev/null
@@ -1,107 +0,0 @@
-package ch.ethz.sis.benchmark;
-
-import ch.ethz.sis.benchmark.impl.IApplicationServerApiWrapper;
-import ch.ethz.sis.logging.LogManager;
-import ch.ethz.sis.logging.Logger;
-import ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi;
-import ch.ethz.sis.ssl.SslCertificateHelper;
-import ch.systemsx.cisd.common.spring.HttpInvokerUtils;
-
-public abstract class Benchmark
-{
- protected BenchmarkConfig configuration;
- protected Logger logger;
- protected IApplicationServerApi v3;
- protected IApplicationServerApiWrapper v3Wrapper;
- protected String sessionToken;
-
- protected long maxOpTime = Long.MIN_VALUE;
- protected long minOpTime = Long.MAX_VALUE;
- protected long numOps = 0;
- protected long totalOpTime = 0;
-
- protected void addOperation(long start, long end, int size) {
- long total = end - start;
- totalOpTime += total;
- numOps++;
- if(total < minOpTime) {
- minOpTime = total;
- }
- if(total > maxOpTime) {
- maxOpTime = total;
- }
- logger.info("REPORT SINGLE\t" + size + "\t" + total);
- }
-
- public void start() {
- logger = LogManager.getLogger(this.getClass());
- logger.traceAccess(null, configuration);
- logger.info("REPORT THREAD\ttotalOpTime\tnumOps\tavgOpTime\tmaxOpTime\tminOpTime");
- logger.info("REPORT SINGLE\topSize\topTime");
- try {
- startInternal();
- } catch(Throwable throwable) {
- logger.catching(throwable);
- }
- logger.traceExit(configuration);
- if(numOps > 0) {
- logger.info("REPORT THREAD\t" + totalOpTime + "\t" + numOps + "\t" + (totalOpTime/numOps) + "\t" + maxOpTime + "\t" + minOpTime);
- } else {
- logger.info("REPORT THREAD\tNO-OP");
- }
-
- }
-
- public abstract void startInternal() throws Exception;
-
- public IApplicationServerApi login() {
- if(v3 == null) {
- v3 = HttpInvokerUtils.createServiceStub(IApplicationServerApi.class, getConfiguration().getOpenbisURL(), getConfiguration().getOpenbisTimeout());
- if (v3Wrapper != null) {
- v3Wrapper.setInstance(v3);
- v3 = v3Wrapper;
- v3Wrapper = null;
- }
- sessionToken = v3.login(getConfiguration().getUser(), getConfiguration().getPassword());
- }
- return v3;
- }
-
- public void logout() {
- v3.logout(sessionToken);
- v3 = null;
- sessionToken = null;
- }
-
- public BenchmarkConfig getConfiguration()
- {
- return configuration;
- }
-
- public void setConfiguration(BenchmarkConfig serviceConfig)
- {
- this.configuration = serviceConfig;
- SslCertificateHelper.trustAnyCertificate(getConfiguration().getOpenbisURL());
- SslCertificateHelper.trustAnyCertificate(getConfiguration().getDatastoreURL());
- }
-
- public long getMaxOpTime() {
- return maxOpTime;
- }
-
- public long getMinOpTime() {
- return minOpTime;
- }
-
- public long getNumOps() {
- return numOps;
- }
-
- public long getTotalOpTime() {
- return totalOpTime;
- }
-
- public long getAVGOpTime() {
- return totalOpTime/numOps;
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/BenchmarkConfig.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/BenchmarkConfig.java
deleted file mode 100644
index 08893ba92531cd987e7c3419106de5e481c9c9b1..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/BenchmarkConfig.java
+++ /dev/null
@@ -1,106 +0,0 @@
-package ch.ethz.sis.benchmark;
-
-import java.util.HashMap;
-
-public class BenchmarkConfig
-{
- private String className;
- private String user;
- private String password;
- private String openbisURL;
- private int openbisTimeout;
- private String datastoreURL;
- private int datastoreTimeout;
- private HashMap<String, String> parameters;
- private int threads;
-
- public BenchmarkConfig() {
- }
-
- public String getClassName() {
- return className;
- }
-
- public void setClassName(String className) {
- this.className = className;
- }
-
- public String getUser() {
- return user;
- }
-
- public void setUser(String user) {
- this.user = user;
- }
-
- public String getPassword() {
- return password;
- }
-
- public void setPassword(String password) {
- this.password = password;
- }
-
- public String getOpenbisURL() {
- return openbisURL;
- }
-
- public void setOpenbisURL(String openbisURL) {
- this.openbisURL = openbisURL;
- }
-
- public int getOpenbisTimeout() {
- return openbisTimeout;
- }
-
- public void setOpenbisTimeout(int openbisTimeout) {
- this.openbisTimeout = openbisTimeout;
- }
-
- public String getDatastoreURL() {
- return datastoreURL;
- }
-
- public void setDatastoreURL(String datastoreURL) {
- this.datastoreURL = datastoreURL;
- }
-
- public int getDatastoreTimeout() {
- return datastoreTimeout;
- }
-
- public void setDatastoreTimeout(int datastoreTimeout) {
- this.datastoreTimeout = datastoreTimeout;
- }
-
- public HashMap<String, String> getParameters() {
- return parameters;
- }
-
- public void setParameters(HashMap<String, String> parameters) {
- this.parameters = parameters;
- }
-
- public int getThreads() {
- return threads;
- }
-
- public void setThreads(int threads) {
- this.threads = threads;
- }
-
- @Override
- public String toString() {
- return "BenchmarkConfig{" +
- "className='" + className + '\'' +
- ", user='" + user + '\'' +
- ", password='" + password + '\'' +
- ", openbisURL='" + openbisURL + '\'' +
- ", openbisTimeout=" + openbisTimeout +
- ", datastoreURL='" + datastoreURL + '\'' +
- ", datastoreTimeout=" + datastoreTimeout +
- ", parameters=" + parameters +
- ", threads=" + threads +
- '}';
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/GlobalSearchBenchmark.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/GlobalSearchBenchmark.java
deleted file mode 100644
index 07cf4d6821e5aef9208e5e5529e51bf4820bd0cc..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/GlobalSearchBenchmark.java
+++ /dev/null
@@ -1,63 +0,0 @@
-package ch.ethz.sis.benchmark.impl;
-
-import ch.ethz.sis.benchmark.Benchmark;
-import ch.ethz.sis.benchmark.util.RandomWord;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.SearchResult;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions.ExperimentFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.global.GlobalSearchObject;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.global.fetchoptions.GlobalSearchObjectFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.global.search.GlobalSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions.SampleFetchOptions;
-
-public class GlobalSearchBenchmark extends Benchmark {
-
- private enum Parameters { ITERATIONS, THREADS }
-
- @Override
- public void startInternal() throws Exception {
- int iterations = Integer.parseInt(this.getConfiguration().getParameters().get(Parameters.ITERATIONS.name()));
- long laps = 0;
- for(int i = 0; i < iterations; i++) {
- String word = RandomWord.getRandomWord();
- GlobalSearchCriteria criteria = new GlobalSearchCriteria();
- criteria.withText().thatContains(word);
-
- GlobalSearchObjectFetchOptions options = new GlobalSearchObjectFetchOptions();
- options.from(0);
- options.count(25);
-
- SampleFetchOptions sampleFetchOptions = options.withSample();
- sampleFetchOptions.withSpace();
- sampleFetchOptions.withType();
- sampleFetchOptions.withRegistrator();
- sampleFetchOptions.withModifier();
- sampleFetchOptions.withExperiment();
- sampleFetchOptions.withProperties();
-
- ExperimentFetchOptions experimentFetchOptions = options.withExperiment();
- experimentFetchOptions.withType();
- experimentFetchOptions.withRegistrator();
- experimentFetchOptions.withModifier();
- experimentFetchOptions.withProperties();
-
- DataSetFetchOptions dataSetFetchOptions = options.withDataSet();
- dataSetFetchOptions.withType();
- dataSetFetchOptions.withRegistrator();
- dataSetFetchOptions.withModifier();
- dataSetFetchOptions.withProperties();
-
- login();
- long start = System.currentTimeMillis();
- SearchResult<GlobalSearchObject> objects = v3.searchGlobally(sessionToken, criteria, options);
- long end = System.currentTimeMillis();
- addOperation(start, end, objects.getTotalCount());
- long lap = end - start;
- laps += lap;
- logout();
- //logger.info("Found " + objects.getTotalCount() + " objects containting '" + word+ "' in " + lap + " millis.");
- }
- //logger.info("Done " + iterations + " global searches in " + laps + " millis, " + (laps/iterations) + " millis/search avg");
- }
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/IApplicationServerApiWrapper.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/IApplicationServerApiWrapper.java
deleted file mode 100644
index db92dd5d68c6f2b35dcf42c189fcc693ab8c91e0..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/IApplicationServerApiWrapper.java
+++ /dev/null
@@ -1,7 +0,0 @@
-package ch.ethz.sis.benchmark.impl;
-
-import ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi;
-
-public interface IApplicationServerApiWrapper extends IApplicationServerApi {
- void setInstance(IApplicationServerApi instance);
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/ListBenchmark.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/ListBenchmark.java
deleted file mode 100644
index ac0429951212648b8e258fa0acd8396a7727f36f..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/ListBenchmark.java
+++ /dev/null
@@ -1,79 +0,0 @@
-package ch.ethz.sis.benchmark.impl;
-
-import java.util.Collections;
-import java.util.List;
-
-import ch.ethz.sis.benchmark.Benchmark;
-import ch.ethz.sis.benchmark.util.RandomValueGenerator;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.SearchResult;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.Experiment;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions.ExperimentFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search.ExperimentSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.Sample;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions.SampleFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search.SampleSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.Space;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.fetchoptions.SpaceFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.search.SpaceSearchCriteria;
-
-public class ListBenchmark extends Benchmark {
-
- private enum Parameters { ITERATIONS, THREADS }
-
- @Override
- public void startInternal() throws Exception {
- login();
- int iterations = Integer.parseInt(this.getConfiguration().getParameters().get(Parameters.ITERATIONS.name()));
- long start = System.currentTimeMillis();
- List<Space> spaces = v3.searchSpaces(sessionToken, new SpaceSearchCriteria(), new SpaceFetchOptions()).getObjects();
- long end = System.currentTimeMillis();
- //logger.info("Found " + spaces.size() + " spaces in " + (end-start) + " millis.");
- final RandomValueGenerator<Space> random = new RandomValueGenerator<>();
- random.addAll(spaces);
- logout();
-
- long laps = 0;
- for(int i = 0; i < iterations; i++) {
- login();
-
- List<Experiment> experiments = Collections.emptyList();
- Space space = null;
- long lapStart1 = System.currentTimeMillis();
- while(experiments.isEmpty()) {
- space = random.getRandom();
- ExperimentSearchCriteria experimentSearchCriteria = new ExperimentSearchCriteria();
- experimentSearchCriteria.withProject().withSpace().withCode().thatEquals(space.getCode());
- ExperimentFetchOptions experimentFetchOptions = new ExperimentFetchOptions();
- experiments = v3.searchExperiments(sessionToken, experimentSearchCriteria, experimentFetchOptions).getObjects();
- }
- long lapEnd1 = System.currentTimeMillis();
- Experiment experiment = experiments.get(0);
- //logger.info("Found experiment '" + experiment.getPermId().getPermId()+ "' from space " + space.getCode() + " in " + (lapEnd1-lapStart1) + " millis.");
-
- SampleSearchCriteria criteria = new SampleSearchCriteria();
- criteria.withExperiment().withPermId().thatEquals(experiment.getPermId().getPermId());
-
- SampleFetchOptions options = new SampleFetchOptions();
- options.from(0);
- options.count(25);
- options.withType();
- options.withSpace();
- options.withRegistrator();
- options.withModifier();
- options.withProperties();
- options.withParents();
- options.withChildren();
-
- long lapStart2 = System.currentTimeMillis();
- SearchResult<Sample> samples = v3.searchSamples(sessionToken, criteria, options);
- long lapEnd2 = System.currentTimeMillis();
- addOperation(lapStart2, lapEnd2, samples.getTotalCount());
- long lap = lapEnd2 - lapStart2;
- laps += lap;
- //logger.info("Found " + samples.getTotalCount() + " objects in experiment '" + experiment.getPermId().getPermId()+ "' from space " + space.getCode() + " in " + lap + " millis.");
- logout();
- }
- //logger.info("Done " + (iterations) + " experiment object lists in " + laps + " millis, " + ((laps)/(iterations)) + " millis/search avg");
- }
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/LoadBenchmark.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/LoadBenchmark.java
deleted file mode 100644
index b9f2c7839db30bb43ecbde59d05ba81d0f03e884..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/LoadBenchmark.java
+++ /dev/null
@@ -1,231 +0,0 @@
-package ch.ethz.sis.benchmark.impl;
-
-import java.rmi.server.UID;
-import java.util.*;
-
-import ch.ethz.sis.benchmark.Benchmark;
-import ch.ethz.sis.benchmark.impl.jdbc.ApplicationServerApiPostgresWrapper;
-import ch.ethz.sis.benchmark.util.RandomValueGenerator;
-import ch.ethz.sis.benchmark.util.RandomWord;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.CreationId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id.EntityTypePermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.ExperimentCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.ExperimentTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.id.ExperimentIdentifier;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create.ProjectCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.id.ProjectIdentifier;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.SampleType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.SampleCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.SampleTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions.SampleTypeFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.id.SampleIdentifier;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search.SampleTypeSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create.SpaceCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.id.SpacePermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.DataType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create.PropertyAssignmentCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create.PropertyTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.id.PropertyTypePermId;
-
-public class LoadBenchmark extends Benchmark {
-
- private enum Parameters { SPACES_TO_CREATE, SAMPLES_TO_CREATE, PROPERTIES_NUMBER, USE_DATABASE, DATABASE_URL, DATABASE_USER, DATABASE_PASS, SET_SAMPLES_RELATIONSHIPS }
- private enum Prefix { SPACE_, COLLECTION_, PROJECT_, OBJECT_ }
-
- @Override
- public void startInternal() throws Exception {
- login();
-
- String propertyTypeCode = "BENCHMARK_STRING_";
- EntityTypePermId sampleTypeCode = new EntityTypePermId("BENCHMARK_OBJECT");
- EntityTypePermId experimentTypeCode = new EntityTypePermId("BENCHMARK_COLLECTION");
-
- SampleTypeSearchCriteria stsc = new SampleTypeSearchCriteria();
- stsc.withCode().thatEquals(sampleTypeCode.getPermId());
- SampleTypeFetchOptions stfo = new SampleTypeFetchOptions();
- List<SampleType> types = v3.searchSampleTypes(sessionToken, stsc, stfo).getObjects();
-
- int propertiesNumber = Integer.parseInt(Optional.ofNullable(this.getConfiguration().getParameters().get(Parameters.PROPERTIES_NUMBER.name())).orElse("2"));
-
- if(types.isEmpty()) {
- //
- // Setup - Create Property Types
- //
- List<PropertyTypeCreation> propertyTypeCreations = new ArrayList<>(propertiesNumber);
- for(int i = 0; i < propertiesNumber; i++) {
- int propertyNumber = i + 1;
- PropertyTypeCreation propertyTypeCreation = new PropertyTypeCreation();
- propertyTypeCreation.setCode(propertyTypeCode + propertyNumber);
- propertyTypeCreation.setDataType(DataType.MULTILINE_VARCHAR);
- propertyTypeCreation.setLabel("Benchmark String " + propertyNumber + " label");
- propertyTypeCreation.setDescription("Benchmark String " + propertyNumber + " description");
- propertyTypeCreations.add(propertyTypeCreation);
- }
-
- v3.createPropertyTypes(sessionToken, propertyTypeCreations);
-
- //
- // Setup - Create Sample Type
- //
-
- SampleTypeCreation sampleTypeCreation = new SampleTypeCreation();
- sampleTypeCreation.setCode(sampleTypeCode.getPermId());
-
- List<PropertyAssignmentCreation> propertyAssignments = new ArrayList<>(propertiesNumber);
- for(int i = 0; i < propertiesNumber; i++) {
- int propertyNumber = i + 1;
- PropertyAssignmentCreation propertyAssignmentCreation = new PropertyAssignmentCreation();
- propertyAssignmentCreation.setPropertyTypeId(new PropertyTypePermId(propertyTypeCode + propertyNumber));
- propertyAssignments.add(propertyAssignmentCreation);
- }
-
- sampleTypeCreation.setPropertyAssignments(propertyAssignments);
-
- v3.createSampleTypes(sessionToken, Arrays.asList(sampleTypeCreation));
-
- //
- // Setup - Create Experiment Type
- //
-
- ExperimentTypeCreation experimentTypeCreation = new ExperimentTypeCreation();
- experimentTypeCreation.setCode(experimentTypeCode.getPermId());
-
- v3.createExperimentTypes(sessionToken, Arrays.asList(experimentTypeCreation));
- }
-
- //
- // Setup - Create codes
- //
- Set<String> codes = new HashSet<String>();
- int spacesToCreate = Integer.parseInt(this.getConfiguration().getParameters().get(Parameters.SPACES_TO_CREATE.name()));
- for(int i = 0; i < spacesToCreate; i++) {
- String code = null;
- while(code == null || codes.contains(code)) {
- code = RandomWord.getRandomWord() + "_" + RandomWord.getRandomWord();
- }
- codes.add(code);
- }
- RandomValueGenerator<String> randomValueGenerator = new RandomValueGenerator<>();
- randomValueGenerator.addAll(codes);
-
- //
- // Part 1 - Creating Spaces
- //
-
- List<SpaceCreation> spaceCreations = new ArrayList<SpaceCreation>();
- for(String code:codes) {
- SpaceCreation creation = new SpaceCreation();
- creation.setCode(Prefix.SPACE_ + code);
- spaceCreations.add(creation);
- }
- long start1 = System.currentTimeMillis();
- v3.createSpaces(sessionToken, spaceCreations);
- long end1 = System.currentTimeMillis();
- //logger.info("Create " + spacesToCreate + " Spaces took: " + (end1-start1) + " millis - " + ((end1-start1)/spacesToCreate) + " millis/space");
-
- //
- // Part 2 - Creating Projects
- //
- List<ProjectCreation> projectCreations = new ArrayList<ProjectCreation>();
- for(String code:codes) {
- ProjectCreation creation = new ProjectCreation();
- creation.setCode(Prefix.PROJECT_ + code);
- creation.setSpaceId(new SpacePermId(Prefix.SPACE_ + code));
- projectCreations.add(creation);
- }
- long start2 = System.currentTimeMillis();
- v3.createProjects(sessionToken, projectCreations);
- long end2 = System.currentTimeMillis();
- //logger.info("Create " + spacesToCreate + " Projects took: " + (end2-start2) + " millis - " + ((end2-start2)/spacesToCreate) + " millis/project");
-
- //
- // Part 3 - Creating Experiments
- //
- List<ExperimentCreation> experimentCreations = new ArrayList<ExperimentCreation>();
- for(String code:codes) {
- ExperimentCreation creation = new ExperimentCreation();
- creation.setCode(Prefix.COLLECTION_ + code);
- creation.setProjectId(new ProjectIdentifier("/" + Prefix.SPACE_ + code + "/" + Prefix.PROJECT_ + code));
- creation.setTypeId(experimentTypeCode);
- experimentCreations.add(creation);
- }
- long start3 = System.currentTimeMillis();
- v3.createExperiments(sessionToken, experimentCreations);
- long end3 = System.currentTimeMillis();
- //logger.info("Create " + spacesToCreate + " Collections took: " + (end3-start3) + " millis - " + ((end3-start3)/spacesToCreate) + " millis/collection");
-
- logout();
- //
- // Part 4 - Creating Samples
- //
- long start4 = System.currentTimeMillis();
-
- Set<String> sampleCodes = new HashSet<String>();
- int sampleBatchSize = 5000;
- int samplesToCreate = Integer.parseInt(this.getConfiguration().getParameters().get(Parameters.SAMPLES_TO_CREATE.name()));
- List<SampleCreation> sampleCreations = new ArrayList<SampleCreation>();
- boolean setSamplesRelationships = Boolean.parseBoolean(this.getConfiguration().getParameters().get(
- Parameters.SET_SAMPLES_RELATIONSHIPS.name()));
- int relationshipsIndex = 0;
- for(int i = 0; i < samplesToCreate; i++) {
- SampleCreation sampleCreation = new SampleCreation();
- String sampleCode = null;
- while(sampleCode == null || sampleCodes.contains(sampleCode)) {
- sampleCode = "SAMPLE_" + RandomWord.getRandomWord() + "_" + RandomWord.getRandomWord() + "_" + RandomWord.getRandomWord();
- }
- sampleCreation.setCreationId(new CreationId(UUID.randomUUID().toString()));
- sampleCreation.setTypeId(sampleTypeCode);
- sampleCreation.setCode(sampleCode);
-
- for(int j = 0; j < propertiesNumber; j++) {
- int propertyNumber = j + 1;
- sampleCreation.setProperty(propertyTypeCode + propertyNumber, RandomWord.getRandomWord() + " " + RandomWord.getRandomWord());
- }
-
- String code = randomValueGenerator.getRandom();
- sampleCreation.setSpaceId(new SpacePermId(Prefix.SPACE_ + code)); // Spaces are distributed randomly
- sampleCreation.setProjectId(new ProjectIdentifier("/" + Prefix.SPACE_ + code + "/" + Prefix.PROJECT_ + code));
- sampleCreation.setExperimentId(new ExperimentIdentifier("/" + Prefix.SPACE_ + code + "/" + Prefix.PROJECT_ + code + "/" + Prefix.COLLECTION_ + code));
- sampleCreations.add(sampleCreation);
-
- if (setSamplesRelationships && relationshipsIndex % 5 == 4)
- {
- SampleCreation sampleCreation1 = sampleCreations.get(relationshipsIndex - 1);
- SampleCreation sampleCreation2 = sampleCreations.get(relationshipsIndex - 2);
- SampleCreation sampleCreation3 = sampleCreations.get(relationshipsIndex - 3);
- SampleCreation sampleCreation4 = sampleCreations.get(relationshipsIndex - 4);
-
- sampleCreation2.setParentIds(Arrays.asList(sampleCreation1.getCreationId()));
- sampleCreation3.setParentIds(Arrays.asList(sampleCreation1.getCreationId()));
- sampleCreation4.setParentIds(Arrays.asList(sampleCreation2.getCreationId()));
- }
-
- relationshipsIndex++;
-
- if(samplesToCreate > sampleBatchSize && (i+1) % sampleBatchSize == 0 || // Every 5000, send to openBIS
- samplesToCreate <= sampleBatchSize && samplesToCreate == sampleCreations.size()) { // If less than 5000, send to openBIS
- // Use JDBC If requested
- boolean useDatabase = Boolean.parseBoolean(this.getConfiguration().getParameters().get(Parameters.USE_DATABASE.name()));
- if (useDatabase) {
- String databaseURL = this.getConfiguration().getParameters().get(Parameters.DATABASE_URL.name());
- String databaseUser = this.getConfiguration().getParameters().get(Parameters.DATABASE_USER.name());
- String databasePass = this.getConfiguration().getParameters().get(Parameters.DATABASE_PASS.name());
- this.v3Wrapper = new ApplicationServerApiPostgresWrapper(databaseURL, databaseUser, databasePass);
- }
- //
- login();
- long lapStart4 = System.currentTimeMillis();
- v3.createSamples(sessionToken, sampleCreations);
- long lapEnd4 = System.currentTimeMillis();
- addOperation(lapStart4, lapEnd4, sampleCreations.size());
- logout();
- //logger.info("Create " + sampleCreations.size() + " Samples took: " + (lapEnd4 - lapStart4) + " millis - " + ((lapEnd4-lapStart4)/sampleCreations.size()) + " millis/sample");
- sampleCreations.clear();
- relationshipsIndex = 0;
- }
- }
- long end4 = System.currentTimeMillis();
- //logger.info("Create " + samplesToCreate + " Samples took: " + (end4-start4) + " millis - " + ((end4-start4)/samplesToCreate) + " millis/sample");
- }
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/ApplicationServerApiPostgresWrapper.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/ApplicationServerApiPostgresWrapper.java
deleted file mode 100644
index 7bbb1b60efc2274fc616eaf7427f2387e5b284e5..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/ApplicationServerApiPostgresWrapper.java
+++ /dev/null
@@ -1,1098 +0,0 @@
-package ch.ethz.sis.benchmark.impl.jdbc;
-
-import ch.ethz.sis.benchmark.impl.IApplicationServerApiWrapper;
-import ch.ethz.sis.openbis.generic.asapi.v3.IApplicationServerApi;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.AuthorizationGroup;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.create.AuthorizationGroupCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.delete.AuthorizationGroupDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.fetchoptions.AuthorizationGroupFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.id.AuthorizationGroupPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.id.IAuthorizationGroupId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.search.AuthorizationGroupSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.authorizationgroup.update.AuthorizationGroupUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.TableModel;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.id.IObjectId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.operation.IOperation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.common.search.SearchResult;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.DataSet;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.DataSetType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.archive.DataSetArchiveOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.DataSetCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.create.DataSetTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DataSetDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.delete.DataSetTypeDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.fetchoptions.DataSetTypeFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.DataSetPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.id.IDataSetId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.lock.DataSetLockOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.search.DataSetTypeSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unarchive.DataSetUnarchiveOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.unlock.DataSetUnlockOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update.DataSetTypeUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.dataset.update.DataSetUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.DataStore;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.fetchoptions.DataStoreFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.datastore.search.DataStoreSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.Deletion;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.fetchoptions.DeletionFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.id.IDeletionId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.deletion.search.DeletionSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.EntityKind;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id.EntityTypePermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.entitytype.id.IEntityTypeId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.Experiment;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.ExperimentType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.ExperimentCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.create.ExperimentTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete.ExperimentDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.delete.ExperimentTypeDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions.ExperimentFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.fetchoptions.ExperimentTypeFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.id.ExperimentIdentifier;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.id.ExperimentPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.id.IExperimentId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search.ExperimentSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.search.ExperimentTypeSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.update.ExperimentTypeUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.experiment.update.ExperimentUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.ExternalDms;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.create.ExternalDmsCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.delete.ExternalDmsDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.fetchoptions.ExternalDmsFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.id.ExternalDmsPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.id.IExternalDmsId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.search.ExternalDmsSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.externaldms.update.ExternalDmsUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.global.GlobalSearchObject;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.global.fetchoptions.GlobalSearchObjectFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.global.search.GlobalSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.Material;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.MaterialType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.MaterialCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.create.MaterialTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete.MaterialDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.delete.MaterialTypeDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.fetchoptions.MaterialFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.fetchoptions.MaterialTypeFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.id.IMaterialId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.id.MaterialPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.search.MaterialSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.search.MaterialTypeSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.update.MaterialTypeUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.material.update.MaterialUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.ObjectKindModification;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.fetchoptions.ObjectKindModificationFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.objectkindmodification.search.ObjectKindModificationSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.IOperationExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.IOperationExecutionResults;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.OperationExecution;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.delete.OperationExecutionDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.fetchoptions.OperationExecutionFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.id.IOperationExecutionId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.search.OperationExecutionSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.operation.update.OperationExecutionUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.Person;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.create.PersonCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.delete.PersonDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.fetchoptions.PersonFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.id.IPersonId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.id.PersonPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.search.PersonSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.person.update.PersonUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.Plugin;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.create.PluginCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.delete.PluginDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.evaluate.PluginEvaluationOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.evaluate.PluginEvaluationResult;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.fetchoptions.PluginFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.id.IPluginId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.id.PluginPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.search.PluginSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.plugin.update.PluginUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.Project;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.create.ProjectCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.delete.ProjectDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.fetchoptions.ProjectFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.id.IProjectId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.id.ProjectIdentifier;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.id.ProjectPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.search.ProjectSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.project.update.ProjectUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.PropertyAssignment;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.PropertyType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.create.PropertyTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.delete.PropertyTypeDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions.PropertyAssignmentFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.fetchoptions.PropertyTypeFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.id.IPropertyTypeId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.id.PropertyTypePermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.search.PropertyAssignmentSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.search.PropertyTypeSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.property.update.PropertyTypeUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.Query;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.QueryDatabase;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.create.QueryCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.delete.QueryDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute.QueryExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.execute.SqlExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.fetchoptions.QueryDatabaseFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.fetchoptions.QueryFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id.IQueryDatabaseId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id.IQueryId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.id.QueryTechId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search.QueryDatabaseSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.search.QuerySearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.query.update.QueryUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.rights.Rights;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.rights.fetchoptions.RightsFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.RoleAssignment;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.create.RoleAssignmentCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.delete.RoleAssignmentDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.fetchoptions.RoleAssignmentFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.id.IRoleAssignmentId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.id.RoleAssignmentTechId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.roleassignment.search.RoleAssignmentSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.Sample;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.SampleType;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.SampleCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.create.SampleTypeCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete.SampleDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.delete.SampleTypeDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions.SampleFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.fetchoptions.SampleTypeFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.id.ISampleId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.id.SamplePermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search.SampleSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.search.SampleTypeSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.update.SampleTypeUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.sample.update.SampleUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.SemanticAnnotation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.create.SemanticAnnotationCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.delete.SemanticAnnotationDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.fetchoptions.SemanticAnnotationFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.id.ISemanticAnnotationId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.id.SemanticAnnotationPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.search.SemanticAnnotationSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.semanticannotation.update.SemanticAnnotationUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.*;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.AggregationServiceExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ProcessingServiceExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.ReportingServiceExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.execute.SearchDomainServiceExecutionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.fetchoptions.*;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id.ICustomASServiceId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.id.IDssServiceId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.service.search.*;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.session.SessionInformation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.Space;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.create.SpaceCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.delete.SpaceDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.fetchoptions.SpaceFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.id.ISpaceId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.id.SpacePermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.search.SpaceSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.space.update.SpaceUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.Tag;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.create.TagCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.delete.TagDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.fetchoptions.TagFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.id.ITagId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.id.TagPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.search.TagSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.tag.update.TagUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.Vocabulary;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.VocabularyTerm;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.VocabularyCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.create.VocabularyTermCreation;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete.VocabularyDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.delete.VocabularyTermDeletionOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions.VocabularyFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.fetchoptions.VocabularyTermFetchOptions;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id.IVocabularyId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id.IVocabularyTermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id.VocabularyPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.id.VocabularyTermPermId;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.search.VocabularySearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.search.VocabularyTermSearchCriteria;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.update.VocabularyTermUpdate;
-import ch.ethz.sis.openbis.generic.asapi.v3.dto.vocabulary.update.VocabularyUpdate;
-
-import java.sql.Connection;
-import java.sql.DriverManager;
-import java.sql.SQLException;
-import java.util.*;
-import java.util.stream.Collectors;
-
-public class ApplicationServerApiPostgresWrapper implements IApplicationServerApiWrapper {
-
- private IApplicationServerApi instance;
- private String databaseURL;
- private String databaseUser;
- private String databasePass;
- private Connection connection;
-
- public ApplicationServerApiPostgresWrapper(String databaseURL,
- String databaseUser,
- String databasePass) throws SQLException {
- //
- this.databaseURL = databaseURL;
- this.databaseUser = databaseUser;
- this.databasePass = databasePass;
- DriverManager.registerDriver(new org.postgresql.Driver());
- //
- }
-
-
- public void setInstance(IApplicationServerApi instance) {
- this.instance = instance;
- }
-
- @Override
- public String login(String s, String s1) {
- //
- try {
- connection = DriverManager.getConnection(databaseURL, databaseUser, databasePass);
- } catch (Throwable t) {
- throw new RuntimeException(t);
- }
- //
- return instance.login(s, s1);
- }
-
- @Override
- public String loginAs(String s, String s1, String s2) {
- return instance.loginAs(s, s1, s2);
- }
-
- @Override
- public String loginAsAnonymousUser() {
- return instance.loginAsAnonymousUser();
- }
-
- @Override
- public void logout(String s) {
- //
- try {
- connection.close();
- } catch (Throwable t) {
- throw new RuntimeException(t);
- }
- //
- instance.logout(s);
- }
-
- @Override
- public SessionInformation getSessionInformation(String s) {
- return instance.getSessionInformation(s);
- }
-
- @Override
- public boolean isSessionActive(String s) {
- return instance.isSessionActive(s);
- }
-
- @Override
- public List<SpacePermId> createSpaces(String s, List<SpaceCreation> list) {
- return instance.createSpaces(s, list);
- }
-
- @Override
- public List<ProjectPermId> createProjects(String s, List<ProjectCreation> list) {
- return instance.createProjects(s, list);
- }
-
- @Override
- public List<ExperimentPermId> createExperiments(String s, List<ExperimentCreation> list) {
- return instance.createExperiments(s, list);
- }
-
- @Override
- public List<EntityTypePermId> createExperimentTypes(String s, List<ExperimentTypeCreation> list) {
- return instance.createExperimentTypes(s, list);
- }
-
- @Override
- public List<SamplePermId> createSamples(String s, List<SampleCreation> list) {
- long start = System.currentTimeMillis();
- Set<String> spaceCodes = list.stream().map(sc -> ((SpacePermId) sc.getSpaceId()).getPermId()).collect(Collectors.toSet());
- Map<String, Long> spaceIdsByCode = SQLQueries.getSpaceIds(connection, spaceCodes);
-
- Set<String> projectIdentifiers = list.stream().map(sc -> ((ProjectIdentifier) sc.getProjectId() != null)?((ProjectIdentifier) sc.getProjectId()).getIdentifier():null).collect(Collectors.toSet());
-
- Map<String, Long> projectIdsByIdentifier = Map.of();
- if(!projectIdentifiers.contains(null)) {
- projectIdsByIdentifier = SQLQueries.getProjectIds(connection, projectIdentifiers, spaceIdsByCode);
- }
-
- Set<String> experimentIdentifiers = list.stream().map(sc -> ((ExperimentIdentifier) sc.getExperimentId() != null)?((ExperimentIdentifier) sc.getExperimentId()).getIdentifier():null).collect(Collectors.toSet());
- Map<String, Long> experimentIdsByIdentifier = Map.of();
- if(!experimentIdentifiers.contains(null)) {
- experimentIdsByIdentifier = SQLQueries.getExperimentIds(connection, experimentIdentifiers, projectIdsByIdentifier);
- }
-
- Set<String> sampleTypeCodes = list.stream().map(sc -> ((EntityTypePermId) sc.getTypeId()).getPermId()).collect(Collectors.toSet());
- Map<String, Long> sampleTypeIdsByCode = SQLQueries.getTypeIds(connection, sampleTypeCodes);
-
- Set<String> propertyTypeCodes = list.stream().flatMap(sc -> sc.getProperties().keySet().stream()).collect(Collectors.toSet());
- Map<String, Long> propertyTypeIdsByCode = SQLQueries.getPropertyTypeIds(connection, propertyTypeCodes);
-
- SessionInformation sessionInformation = instance.getSessionInformation(s);
- String user_id = sessionInformation.getPerson().getUserId();
- Long personId = SQLQueries.getPersonId(connection, user_id);
-
- Set<String> stIdsptIds = new HashSet<>();
- for (SampleCreation sampleCreation:list) {
- Long sampleTypeId = sampleTypeIdsByCode.get(((EntityTypePermId) sampleCreation.getTypeId()).getPermId());
- for (String propertyCode:sampleCreation.getProperties().keySet()) {
- Long propertyTypeId = propertyTypeIdsByCode.get(propertyCode);
- stIdsptIds.add(sampleTypeId + ":" + propertyTypeId);
- }
- }
- Map<String, Long> stIdsptIdsByReference = SQLQueries.getSampleTypePropertyTypeIds(connection, stIdsptIds);
-
- List<SamplePermId> permIds = new ArrayList<>(list.size());
-
- List<Long> nextIds = SQLQueries.nextSampleIds(connection, list.size());
-
- List<List<Object>> sampleInsertArgs = new ArrayList<>();
- List<List<Object>> samplePropertiesInsertArgs = new ArrayList<>();
- for (int idx = 0; idx < list.size(); idx++) {
- SampleCreation sampleCreation = list.get(idx);
-
- Long id = nextIds.get(idx);
- String perm_id = UUID.randomUUID().toString();
- permIds.add(new SamplePermId(perm_id));
- String code = sampleCreation.getCode();
- Long proj_id = null;
- if (sampleCreation.getProjectId() != null) {
- proj_id = projectIdsByIdentifier.get(((ProjectIdentifier) sampleCreation.getProjectId()).getIdentifier());
- }
- Long expe_id = null;
- if (sampleCreation.getExperimentId() != null) {
- expe_id = experimentIdsByIdentifier.get(((ExperimentIdentifier) sampleCreation.getExperimentId()).getIdentifier());
- }
- Long saty_id = sampleTypeIdsByCode.get(((EntityTypePermId)sampleCreation.getTypeId()).getPermId());
- Long pers_id_registerer = personId;
- Long modification_timestamp = personId;
- Long space_id = spaceIdsByCode.get(((SpacePermId) sampleCreation.getSpaceId()).getPermId());
- sampleInsertArgs.add(Arrays.asList(id, perm_id, code, proj_id, expe_id, saty_id, pers_id_registerer, modification_timestamp, space_id));
-
- Long sampleTypeId = sampleTypeIdsByCode.get(((EntityTypePermId) sampleCreation.getTypeId()).getPermId());
- for (String propertyCode:sampleCreation.getProperties().keySet()) {
- Long propertyTypeId = propertyTypeIdsByCode.get(propertyCode);
- String reference = sampleTypeId + ":" + propertyTypeId;
- samplePropertiesInsertArgs.add(Arrays.asList(id, stIdsptIdsByReference.get(reference), sampleCreation.getProperties().get(propertyCode), pers_id_registerer, modification_timestamp));
- }
- }
-
- try {
- connection.setAutoCommit(false);
-
- long end = System.currentTimeMillis();
- System.out.println("ApplicationServerApiPostgresWrapper.createSamples Preparation Took: " + (end-start)/1000 + " sec");
- int inserts = SQLQueries.insertSamples(connection, sampleInsertArgs);
- long end2 = System.currentTimeMillis();
- System.out.println("ApplicationServerApiPostgresWrapper.createSamples inserts Took: " + (end2-end)/1000 + " sec");
- int propertyInserts = SQLQueries.insertSamplesProperties(connection, samplePropertiesInsertArgs);
- long end3 = System.currentTimeMillis();
- System.out.println("ApplicationServerApiPostgresWrapper.createSamples property inserts Took: " + (end3-end2)/1000 + " sec");
- System.out.println("ApplicationServerApiPostgresWrapper.createSamples Total: " + (end3-start)/1000 + " sec");
- System.out.println("ApplicationServerApiPostgresWrapper.createSamples Total: " + list.size()/((end3-start)/1000) + " samples/sec");
-
- connection.commit();
- } catch (Exception ex) {
- try {
- connection.rollback();
- } catch (Exception ex2) {}
- } finally {
- try {
- connection.setAutoCommit(true);
- } catch (Exception ex3) {}
- }
-
- return permIds;
- }
-
- @Override
- public List<EntityTypePermId> createSampleTypes(String s, List<SampleTypeCreation> list) {
- return instance.createSampleTypes(s, list);
- }
-
- @Override
- public List<DataSetPermId> createDataSets(String s, List<DataSetCreation> list) {
- return instance.createDataSets(s, list);
- }
-
- @Override
- public List<EntityTypePermId> createDataSetTypes(String s, List<DataSetTypeCreation> list) {
- return instance.createDataSetTypes(s, list);
- }
-
- @Override
- public List<MaterialPermId> createMaterials(String s, List<MaterialCreation> list) {
- return instance.createMaterials(s, list);
- }
-
- @Override
- public List<EntityTypePermId> createMaterialTypes(String s, List<MaterialTypeCreation> list) {
- return instance.createMaterialTypes(s, list);
- }
-
- @Override
- public List<PropertyTypePermId> createPropertyTypes(String s, List<PropertyTypeCreation> list) {
- return instance.createPropertyTypes(s, list);
- }
-
- @Override
- public List<PluginPermId> createPlugins(String s, List<PluginCreation> list) {
- return instance.createPlugins(s, list);
- }
-
- @Override
- public List<VocabularyPermId> createVocabularies(String s, List<VocabularyCreation> list) {
- return instance.createVocabularies(s, list);
- }
-
- @Override
- public List<VocabularyTermPermId> createVocabularyTerms(String s, List<VocabularyTermCreation> list) {
- return instance.createVocabularyTerms(s, list);
- }
-
- @Override
- public List<TagPermId> createTags(String s, List<TagCreation> list) {
- return instance.createTags(s, list);
- }
-
- @Override
- public List<AuthorizationGroupPermId> createAuthorizationGroups(String s, List<AuthorizationGroupCreation> list) {
- return instance.createAuthorizationGroups(s, list);
- }
-
- @Override
- public List<RoleAssignmentTechId> createRoleAssignments(String s, List<RoleAssignmentCreation> list) {
- return instance.createRoleAssignments(s, list);
- }
-
- @Override
- public List<PersonPermId> createPersons(String s, List<PersonCreation> list) {
- return instance.createPersons(s, list);
- }
-
- @Override
- public List<ExternalDmsPermId> createExternalDataManagementSystems(String s, List<ExternalDmsCreation> list) {
- return instance.createExternalDataManagementSystems(s, list);
- }
-
- @Override
- public List<QueryTechId> createQueries(String s, List<QueryCreation> list) {
- return instance.createQueries(s, list);
- }
-
- @Override
- public List<SemanticAnnotationPermId> createSemanticAnnotations(String s, List<SemanticAnnotationCreation> list) {
- return instance.createSemanticAnnotations(s, list);
- }
-
- @Override
- public void updateSpaces(String s, List<SpaceUpdate> list) {
- instance.updateSpaces(s, list);
- }
-
- @Override
- public void updateProjects(String s, List<ProjectUpdate> list) {
- instance.updateProjects(s, list);
- }
-
- @Override
- public void updateExperiments(String s, List<ExperimentUpdate> list) {
- instance.updateExperiments(s, list);
- }
-
- @Override
- public void updateExperimentTypes(String s, List<ExperimentTypeUpdate> list) {
- instance.updateExperimentTypes(s, list);
- }
-
- @Override
- public void updateSamples(String s, List<SampleUpdate> list) {
- instance.updateSamples(s, list);
- }
-
- @Override
- public void updateSampleTypes(String s, List<SampleTypeUpdate> list) {
- instance.updateSampleTypes(s, list);
- }
-
- @Override
- public void updateDataSets(String s, List<DataSetUpdate> list) {
- instance.updateDataSets(s, list);
- }
-
- @Override
- public void updateDataSetTypes(String s, List<DataSetTypeUpdate> list) {
- instance.updateDataSetTypes(s, list);
- }
-
- @Override
- public void updateMaterials(String s, List<MaterialUpdate> list) {
- instance.updateMaterials(s, list);
- }
-
- @Override
- public void updateMaterialTypes(String s, List<MaterialTypeUpdate> list) {
- instance.updateMaterialTypes(s, list);
- }
-
- @Override
- public void updateExternalDataManagementSystems(String s, List<ExternalDmsUpdate> list) {
- instance.updateExternalDataManagementSystems(s, list);
- }
-
- @Override
- public void updatePropertyTypes(String s, List<PropertyTypeUpdate> list) {
- instance.updatePropertyTypes(s, list);
- }
-
- @Override
- public void updatePlugins(String s, List<PluginUpdate> list) {
- instance.updatePlugins(s, list);
- }
-
- @Override
- public void updateVocabularies(String s, List<VocabularyUpdate> list) {
- instance.updateVocabularies(s, list);
- }
-
- @Override
- public void updateVocabularyTerms(String s, List<VocabularyTermUpdate> list) {
- instance.updateVocabularyTerms(s, list);
- }
-
- @Override
- public void updateTags(String s, List<TagUpdate> list) {
- instance.updateTags(s, list);
- }
-
- @Override
- public void updateAuthorizationGroups(String s, List<AuthorizationGroupUpdate> list) {
- instance.updateAuthorizationGroups(s, list);
- }
-
- @Override
- public void updatePersons(String s, List<PersonUpdate> list) {
- instance.updatePersons(s, list);
- }
-
- @Override
- public void updateOperationExecutions(String s, List<OperationExecutionUpdate> list) {
- instance.updateOperationExecutions(s, list);
- }
-
- @Override
- public void updateSemanticAnnotations(String s, List<SemanticAnnotationUpdate> list) {
- instance.updateSemanticAnnotations(s, list);
- }
-
- @Override
- public void updateQueries(String s, List<QueryUpdate> list) {
- instance.updateQueries(s, list);
-
- }
-
- @Override
- public Map<IObjectId, Rights> getRights(String s, List<? extends IObjectId> list, RightsFetchOptions rightsFetchOptions) {
- return instance.getRights(s, list, rightsFetchOptions);
- }
-
- @Override
- public Map<ISpaceId, Space> getSpaces(String s, List<? extends ISpaceId> list, SpaceFetchOptions spaceFetchOptions) {
- return instance.getSpaces(s, list, spaceFetchOptions);
- }
-
- @Override
- public Map<IProjectId, Project> getProjects(String s, List<? extends IProjectId> list, ProjectFetchOptions projectFetchOptions) {
- return instance.getProjects(s, list, projectFetchOptions);
- }
-
- @Override
- public Map<IExperimentId, Experiment> getExperiments(String s, List<? extends IExperimentId> list, ExperimentFetchOptions experimentFetchOptions) {
- return instance.getExperiments(s, list, experimentFetchOptions);
- }
-
- @Override
- public Map<IEntityTypeId, ExperimentType> getExperimentTypes(String s, List<? extends IEntityTypeId> list, ExperimentTypeFetchOptions experimentTypeFetchOptions) {
- return instance.getExperimentTypes(s, list, experimentTypeFetchOptions);
- }
-
- @Override
- public Map<ISampleId, Sample> getSamples(String s, List<? extends ISampleId> list, SampleFetchOptions sampleFetchOptions) {
- return instance.getSamples(s, list, sampleFetchOptions);
- }
-
- @Override
- public Map<IEntityTypeId, SampleType> getSampleTypes(String s, List<? extends IEntityTypeId> list, SampleTypeFetchOptions sampleTypeFetchOptions) {
- return instance.getSampleTypes(s, list, sampleTypeFetchOptions);
- }
-
- @Override
- public Map<IDataSetId, DataSet> getDataSets(String s, List<? extends IDataSetId> list, DataSetFetchOptions dataSetFetchOptions) {
- return instance.getDataSets(s, list, dataSetFetchOptions);
- }
-
- @Override
- public Map<IEntityTypeId, DataSetType> getDataSetTypes(String s, List<? extends IEntityTypeId> list, DataSetTypeFetchOptions dataSetTypeFetchOptions) {
- return instance.getDataSetTypes(s, list, dataSetTypeFetchOptions);
- }
-
- @Override
- public Map<IMaterialId, Material> getMaterials(String s, List<? extends IMaterialId> list, MaterialFetchOptions materialFetchOptions) {
- return instance.getMaterials(s, list, materialFetchOptions);
- }
-
- @Override
- public Map<IEntityTypeId, MaterialType> getMaterialTypes(String s, List<? extends IEntityTypeId> list, MaterialTypeFetchOptions materialTypeFetchOptions) {
- return instance.getMaterialTypes(s, list, materialTypeFetchOptions);
- }
-
- @Override
- public Map<IPropertyTypeId, PropertyType> getPropertyTypes(String s, List<? extends IPropertyTypeId> list, PropertyTypeFetchOptions propertyTypeFetchOptions) {
- return instance.getPropertyTypes(s, list, propertyTypeFetchOptions);
- }
-
- @Override
- public Map<IPluginId, Plugin> getPlugins(String s, List<? extends IPluginId> list, PluginFetchOptions pluginFetchOptions) {
- return instance.getPlugins(s, list, pluginFetchOptions);
- }
-
- @Override
- public Map<IVocabularyId, Vocabulary> getVocabularies(String s, List<? extends IVocabularyId> list, VocabularyFetchOptions vocabularyFetchOptions) {
- return instance.getVocabularies(s, list, vocabularyFetchOptions);
- }
-
- @Override
- public Map<IVocabularyTermId, VocabularyTerm> getVocabularyTerms(String s, List<? extends IVocabularyTermId> list, VocabularyTermFetchOptions vocabularyTermFetchOptions) {
- return instance.getVocabularyTerms(s, list, vocabularyTermFetchOptions);
- }
-
- @Override
- public Map<ITagId, Tag> getTags(String s, List<? extends ITagId> list, TagFetchOptions tagFetchOptions) {
- return instance.getTags(s, list, tagFetchOptions);
- }
-
- @Override
- public Map<IAuthorizationGroupId, AuthorizationGroup> getAuthorizationGroups(String s, List<? extends IAuthorizationGroupId> list, AuthorizationGroupFetchOptions authorizationGroupFetchOptions) {
- return instance.getAuthorizationGroups(s, list, authorizationGroupFetchOptions);
- }
-
- @Override
- public Map<IRoleAssignmentId, RoleAssignment> getRoleAssignments(String s, List<? extends IRoleAssignmentId> list, RoleAssignmentFetchOptions roleAssignmentFetchOptions) {
- return instance.getRoleAssignments(s, list, roleAssignmentFetchOptions);
- }
-
- @Override
- public Map<IPersonId, Person> getPersons(String s, List<? extends IPersonId> list, PersonFetchOptions personFetchOptions) {
- return instance.getPersons(s, list, personFetchOptions);
- }
-
- @Override
- public Map<IExternalDmsId, ExternalDms> getExternalDataManagementSystems(String s, List<? extends IExternalDmsId> list, ExternalDmsFetchOptions externalDmsFetchOptions) {
- return instance.getExternalDataManagementSystems(s, list, externalDmsFetchOptions);
- }
-
- @Override
- public Map<ISemanticAnnotationId, SemanticAnnotation> getSemanticAnnotations(String s, List<? extends ISemanticAnnotationId> list, SemanticAnnotationFetchOptions semanticAnnotationFetchOptions) {
- return instance.getSemanticAnnotations(s, list, semanticAnnotationFetchOptions);
- }
-
- @Override
- public Map<IOperationExecutionId, OperationExecution> getOperationExecutions(String s, List<? extends IOperationExecutionId> list, OperationExecutionFetchOptions operationExecutionFetchOptions) {
- return instance.getOperationExecutions(s, list, operationExecutionFetchOptions);
- }
-
- @Override
- public Map<IQueryId, Query> getQueries(String s, List<? extends IQueryId> list, QueryFetchOptions queryFetchOptions) {
- return instance.getQueries(s, list, queryFetchOptions);
- }
-
- @Override
- public Map<IQueryDatabaseId, QueryDatabase> getQueryDatabases(String s, List<? extends IQueryDatabaseId> list, QueryDatabaseFetchOptions queryDatabaseFetchOptions) {
- return instance.getQueryDatabases(s, list, queryDatabaseFetchOptions);
- }
-
- @Override
- public SearchResult<Space> searchSpaces(String s, SpaceSearchCriteria spaceSearchCriteria, SpaceFetchOptions spaceFetchOptions) {
- return instance.searchSpaces(s, spaceSearchCriteria, spaceFetchOptions);
- }
-
- @Override
- public SearchResult<Project> searchProjects(String s, ProjectSearchCriteria projectSearchCriteria, ProjectFetchOptions projectFetchOptions) {
- return instance.searchProjects(s, projectSearchCriteria, projectFetchOptions);
- }
-
- @Override
- public SearchResult<Experiment> searchExperiments(String s, ExperimentSearchCriteria experimentSearchCriteria, ExperimentFetchOptions experimentFetchOptions) {
- return instance.searchExperiments(s, experimentSearchCriteria, experimentFetchOptions);
- }
-
- @Override
- public SearchResult<ExperimentType> searchExperimentTypes(String s, ExperimentTypeSearchCriteria experimentTypeSearchCriteria, ExperimentTypeFetchOptions experimentTypeFetchOptions) {
- return instance.searchExperimentTypes(s, experimentTypeSearchCriteria, experimentTypeFetchOptions);
- }
-
- @Override
- public SearchResult<Sample> searchSamples(String s, SampleSearchCriteria sampleSearchCriteria, SampleFetchOptions sampleFetchOptions) {
- return instance.searchSamples(s, sampleSearchCriteria, sampleFetchOptions);
- }
-
- @Override
- public SearchResult<SampleType> searchSampleTypes(String s, SampleTypeSearchCriteria sampleTypeSearchCriteria, SampleTypeFetchOptions sampleTypeFetchOptions) {
- return instance.searchSampleTypes(s, sampleTypeSearchCriteria, sampleTypeFetchOptions);
- }
-
- @Override
- public SearchResult<DataSet> searchDataSets(String s, DataSetSearchCriteria dataSetSearchCriteria, DataSetFetchOptions dataSetFetchOptions) {
- return instance.searchDataSets(s, dataSetSearchCriteria, dataSetFetchOptions);
- }
-
- @Override
- public SearchResult<DataSetType> searchDataSetTypes(String s, DataSetTypeSearchCriteria dataSetTypeSearchCriteria, DataSetTypeFetchOptions dataSetTypeFetchOptions) {
- return instance.searchDataSetTypes(s, dataSetTypeSearchCriteria, dataSetTypeFetchOptions);
- }
-
- @Override
- public SearchResult<Material> searchMaterials(String s, MaterialSearchCriteria materialSearchCriteria, MaterialFetchOptions materialFetchOptions) {
- return instance.searchMaterials(s, materialSearchCriteria, materialFetchOptions);
- }
-
- @Override
- public SearchResult<ExternalDms> searchExternalDataManagementSystems(String s, ExternalDmsSearchCriteria externalDmsSearchCriteria, ExternalDmsFetchOptions externalDmsFetchOptions) {
- return instance.searchExternalDataManagementSystems(s, externalDmsSearchCriteria, externalDmsFetchOptions);
- }
-
- @Override
- public SearchResult<MaterialType> searchMaterialTypes(String s, MaterialTypeSearchCriteria materialTypeSearchCriteria, MaterialTypeFetchOptions materialTypeFetchOptions) {
- return instance.searchMaterialTypes(s, materialTypeSearchCriteria, materialTypeFetchOptions);
- }
-
- @Override
- public SearchResult<Plugin> searchPlugins(String s, PluginSearchCriteria pluginSearchCriteria, PluginFetchOptions pluginFetchOptions) {
- return instance.searchPlugins(s, pluginSearchCriteria, pluginFetchOptions);
- }
-
- @Override
- public SearchResult<Vocabulary> searchVocabularies(String s, VocabularySearchCriteria vocabularySearchCriteria, VocabularyFetchOptions vocabularyFetchOptions) {
- return instance.searchVocabularies(s, vocabularySearchCriteria, vocabularyFetchOptions);
- }
-
- @Override
- public SearchResult<VocabularyTerm> searchVocabularyTerms(String s, VocabularyTermSearchCriteria vocabularyTermSearchCriteria, VocabularyTermFetchOptions vocabularyTermFetchOptions) {
- return instance.searchVocabularyTerms(s, vocabularyTermSearchCriteria, vocabularyTermFetchOptions);
- }
-
- @Override
- public SearchResult<Tag> searchTags(String s, TagSearchCriteria tagSearchCriteria, TagFetchOptions tagFetchOptions) {
- return instance.searchTags(s, tagSearchCriteria, tagFetchOptions);
- }
-
- @Override
- public SearchResult<AuthorizationGroup> searchAuthorizationGroups(String s, AuthorizationGroupSearchCriteria authorizationGroupSearchCriteria, AuthorizationGroupFetchOptions authorizationGroupFetchOptions) {
- return instance.searchAuthorizationGroups(s, authorizationGroupSearchCriteria, authorizationGroupFetchOptions);
- }
-
- @Override
- public SearchResult<RoleAssignment> searchRoleAssignments(String s, RoleAssignmentSearchCriteria roleAssignmentSearchCriteria, RoleAssignmentFetchOptions roleAssignmentFetchOptions) {
- return instance.searchRoleAssignments(s, roleAssignmentSearchCriteria, roleAssignmentFetchOptions);
- }
-
- @Override
- public SearchResult<Person> searchPersons(String s, PersonSearchCriteria personSearchCriteria, PersonFetchOptions personFetchOptions) {
- return instance.searchPersons(s, personSearchCriteria, personFetchOptions);
- }
-
- @Override
- public SearchResult<CustomASService> searchCustomASServices(String s, CustomASServiceSearchCriteria customASServiceSearchCriteria, CustomASServiceFetchOptions customASServiceFetchOptions) {
- return instance.searchCustomASServices(s, customASServiceSearchCriteria, customASServiceFetchOptions);
- }
-
- @Override
- public SearchResult<SearchDomainService> searchSearchDomainServices(String s, SearchDomainServiceSearchCriteria searchDomainServiceSearchCriteria, SearchDomainServiceFetchOptions searchDomainServiceFetchOptions) {
- return instance.searchSearchDomainServices(s, searchDomainServiceSearchCriteria, searchDomainServiceFetchOptions);
- }
-
- @Override
- public SearchResult<AggregationService> searchAggregationServices(String s, AggregationServiceSearchCriteria aggregationServiceSearchCriteria, AggregationServiceFetchOptions aggregationServiceFetchOptions) {
- return instance.searchAggregationServices(s, aggregationServiceSearchCriteria, aggregationServiceFetchOptions);
- }
-
- @Override
- public SearchResult<ReportingService> searchReportingServices(String s, ReportingServiceSearchCriteria reportingServiceSearchCriteria, ReportingServiceFetchOptions reportingServiceFetchOptions) {
- return instance.searchReportingServices(s, reportingServiceSearchCriteria, reportingServiceFetchOptions);
- }
-
- @Override
- public SearchResult<ProcessingService> searchProcessingServices(String s, ProcessingServiceSearchCriteria processingServiceSearchCriteria, ProcessingServiceFetchOptions processingServiceFetchOptions) {
- return instance.searchProcessingServices(s, processingServiceSearchCriteria, processingServiceFetchOptions);
- }
-
- @Override
- public SearchResult<ObjectKindModification> searchObjectKindModifications(String s, ObjectKindModificationSearchCriteria objectKindModificationSearchCriteria, ObjectKindModificationFetchOptions objectKindModificationFetchOptions) {
- return instance.searchObjectKindModifications(s, objectKindModificationSearchCriteria, objectKindModificationFetchOptions);
- }
-
- @Override
- public SearchResult<GlobalSearchObject> searchGlobally(String s, GlobalSearchCriteria globalSearchCriteria, GlobalSearchObjectFetchOptions globalSearchObjectFetchOptions) {
- return instance.searchGlobally(s, globalSearchCriteria, globalSearchObjectFetchOptions);
- }
-
- @Override
- public SearchResult<OperationExecution> searchOperationExecutions(String s, OperationExecutionSearchCriteria operationExecutionSearchCriteria, OperationExecutionFetchOptions operationExecutionFetchOptions) {
- return instance.searchOperationExecutions(s, operationExecutionSearchCriteria, operationExecutionFetchOptions);
- }
-
- @Override
- public SearchResult<DataStore> searchDataStores(String s, DataStoreSearchCriteria dataStoreSearchCriteria, DataStoreFetchOptions dataStoreFetchOptions) {
- return instance.searchDataStores(s, dataStoreSearchCriteria, dataStoreFetchOptions);
- }
-
- @Override
- public SearchResult<SemanticAnnotation> searchSemanticAnnotations(String s, SemanticAnnotationSearchCriteria semanticAnnotationSearchCriteria, SemanticAnnotationFetchOptions semanticAnnotationFetchOptions) {
- return instance.searchSemanticAnnotations(s, semanticAnnotationSearchCriteria, semanticAnnotationFetchOptions);
- }
-
- @Override
- public SearchResult<PropertyType> searchPropertyTypes(String s, PropertyTypeSearchCriteria propertyTypeSearchCriteria, PropertyTypeFetchOptions propertyTypeFetchOptions) {
- return instance.searchPropertyTypes(s, propertyTypeSearchCriteria, propertyTypeFetchOptions);
- }
-
- @Override
- public SearchResult<PropertyAssignment> searchPropertyAssignments(String s, PropertyAssignmentSearchCriteria propertyAssignmentSearchCriteria, PropertyAssignmentFetchOptions propertyAssignmentFetchOptions) {
- return instance.searchPropertyAssignments(s, propertyAssignmentSearchCriteria, propertyAssignmentFetchOptions);
- }
-
- @Override
- public SearchResult<Query> searchQueries(String s, QuerySearchCriteria querySearchCriteria, QueryFetchOptions queryFetchOptions) {
- return instance.searchQueries(s, querySearchCriteria, queryFetchOptions);
- }
-
- @Override
- public SearchResult<QueryDatabase> searchQueryDatabases(String s, QueryDatabaseSearchCriteria queryDatabaseSearchCriteria, QueryDatabaseFetchOptions queryDatabaseFetchOptions) {
- return instance.searchQueryDatabases(s, queryDatabaseSearchCriteria, queryDatabaseFetchOptions);
- }
-
- @Override
- public void deleteSpaces(String s, List<? extends ISpaceId> list, SpaceDeletionOptions spaceDeletionOptions) {
- instance.deleteSpaces(s, list, spaceDeletionOptions);
- }
-
- @Override
- public void deleteProjects(String s, List<? extends IProjectId> list, ProjectDeletionOptions projectDeletionOptions) {
- instance.deleteProjects(s, list, projectDeletionOptions);
- }
-
- @Override
- public IDeletionId deleteExperiments(String s, List<? extends IExperimentId> list, ExperimentDeletionOptions experimentDeletionOptions) {
- return instance.deleteExperiments(s, list, experimentDeletionOptions);
- }
-
- @Override
- public IDeletionId deleteSamples(String s, List<? extends ISampleId> list, SampleDeletionOptions sampleDeletionOptions) {
- return instance.deleteSamples(s, list, sampleDeletionOptions);
- }
-
- @Override
- public IDeletionId deleteDataSets(String s, List<? extends IDataSetId> list, DataSetDeletionOptions dataSetDeletionOptions) {
- return instance.deleteDataSets(s, list, dataSetDeletionOptions);
- }
-
- @Override
- public void deleteMaterials(String s, List<? extends IMaterialId> list, MaterialDeletionOptions materialDeletionOptions) {
- instance.deleteMaterials(s, list, materialDeletionOptions);
- }
-
- @Override
- public void deletePlugins(String s, List<? extends IPluginId> list, PluginDeletionOptions pluginDeletionOptions) {
- instance.deletePlugins(s, list, pluginDeletionOptions);
- }
-
- @Override
- public void deletePropertyTypes(String s, List<? extends IPropertyTypeId> list, PropertyTypeDeletionOptions propertyTypeDeletionOptions) {
- instance.deletePropertyTypes(s, list, propertyTypeDeletionOptions);
- }
-
- @Override
- public void deleteVocabularies(String s, List<? extends IVocabularyId> list, VocabularyDeletionOptions vocabularyDeletionOptions) {
- instance.deleteVocabularies(s, list, vocabularyDeletionOptions);
- }
-
- @Override
- public void deleteVocabularyTerms(String s, List<? extends IVocabularyTermId> list, VocabularyTermDeletionOptions vocabularyTermDeletionOptions) {
- instance.deleteVocabularyTerms(s, list, vocabularyTermDeletionOptions);
- }
-
- @Override
- public void deleteExperimentTypes(String s, List<? extends IEntityTypeId> list, ExperimentTypeDeletionOptions experimentTypeDeletionOptions) {
- instance.deleteExperimentTypes(s, list, experimentTypeDeletionOptions);
- }
-
- @Override
- public void deleteSampleTypes(String s, List<? extends IEntityTypeId> list, SampleTypeDeletionOptions sampleTypeDeletionOptions) {
- instance.deleteSampleTypes(s, list, sampleTypeDeletionOptions);
- }
-
- @Override
- public void deleteDataSetTypes(String s, List<? extends IEntityTypeId> list, DataSetTypeDeletionOptions dataSetTypeDeletionOptions) {
- instance.deleteDataSetTypes(s, list, dataSetTypeDeletionOptions);
- }
-
- @Override
- public void deleteMaterialTypes(String s, List<? extends IEntityTypeId> list, MaterialTypeDeletionOptions materialTypeDeletionOptions) {
- instance.deleteMaterialTypes(s, list, materialTypeDeletionOptions);
- }
-
- @Override
- public void deleteExternalDataManagementSystems(String s, List<? extends IExternalDmsId> list, ExternalDmsDeletionOptions externalDmsDeletionOptions) {
- instance.deleteExternalDataManagementSystems(s, list, externalDmsDeletionOptions);
- }
-
- @Override
- public void deleteTags(String s, List<? extends ITagId> list, TagDeletionOptions tagDeletionOptions) {
- instance.deleteTags(s, list, tagDeletionOptions);
- }
-
- @Override
- public void deleteAuthorizationGroups(String s, List<? extends IAuthorizationGroupId> list, AuthorizationGroupDeletionOptions authorizationGroupDeletionOptions) {
- instance.deleteAuthorizationGroups(s, list, authorizationGroupDeletionOptions);
- }
-
- @Override
- public void deleteRoleAssignments(String s, List<? extends IRoleAssignmentId> list, RoleAssignmentDeletionOptions roleAssignmentDeletionOptions) {
- instance.deleteRoleAssignments(s, list, roleAssignmentDeletionOptions);
- }
-
- @Override
- public void deleteOperationExecutions(String s, List<? extends IOperationExecutionId> list, OperationExecutionDeletionOptions operationExecutionDeletionOptions) {
- instance.deleteOperationExecutions(s, list, operationExecutionDeletionOptions);
- }
-
- @Override
- public void deleteSemanticAnnotations(String s, List<? extends ISemanticAnnotationId> list, SemanticAnnotationDeletionOptions semanticAnnotationDeletionOptions) {
- instance.deleteSemanticAnnotations(s, list, semanticAnnotationDeletionOptions);
- }
-
- @Override
- public void deleteQueries(String s, List<? extends IQueryId> list, QueryDeletionOptions queryDeletionOptions) {
- instance.deleteQueries(s, list, queryDeletionOptions);
- }
-
- @Override
- public void deletePersons(String s, List<? extends IPersonId> list, PersonDeletionOptions personDeletionOptions) {
- instance.deletePersons(s, list, personDeletionOptions);
- }
-
- @Override
- public SearchResult<Deletion> searchDeletions(String s, DeletionSearchCriteria deletionSearchCriteria, DeletionFetchOptions deletionFetchOptions) {
- return instance.searchDeletions(s, deletionSearchCriteria, deletionFetchOptions);
- }
-
- @Override
- public void revertDeletions(String s, List<? extends IDeletionId> list) {
- instance.revertDeletions(s, list);
- }
-
- @Override
- public void confirmDeletions(String s, List<? extends IDeletionId> list) {
- instance.confirmDeletions(s, list);
- }
-
- @Override
- public Object executeCustomASService(String s, ICustomASServiceId iCustomASServiceId, CustomASServiceExecutionOptions customASServiceExecutionOptions) {
- return instance.executeCustomASService(s, iCustomASServiceId, customASServiceExecutionOptions);
- }
-
- @Override
- public SearchResult<SearchDomainServiceExecutionResult> executeSearchDomainService(String s, SearchDomainServiceExecutionOptions searchDomainServiceExecutionOptions) {
- return instance.executeSearchDomainService(s, searchDomainServiceExecutionOptions);
- }
-
- @Override
- public TableModel executeAggregationService(String s, IDssServiceId iDssServiceId, AggregationServiceExecutionOptions aggregationServiceExecutionOptions) {
- return instance.executeAggregationService(s, iDssServiceId, aggregationServiceExecutionOptions);
- }
-
- @Override
- public TableModel executeReportingService(String s, IDssServiceId iDssServiceId, ReportingServiceExecutionOptions reportingServiceExecutionOptions) {
- return instance.executeReportingService(s, iDssServiceId, reportingServiceExecutionOptions);
- }
-
- @Override
- public void executeProcessingService(String s, IDssServiceId iDssServiceId, ProcessingServiceExecutionOptions processingServiceExecutionOptions) {
- instance.executeProcessingService(s, iDssServiceId, processingServiceExecutionOptions);
- }
-
- @Override
- public TableModel executeQuery(String s, IQueryId iQueryId, QueryExecutionOptions queryExecutionOptions) {
- return instance.executeQuery(s, iQueryId, queryExecutionOptions);
- }
-
- @Override
- public TableModel executeSql(String s, String s1, SqlExecutionOptions sqlExecutionOptions) {
- return instance.executeSql(s, s1, sqlExecutionOptions);
- }
-
- @Override
- public PluginEvaluationResult evaluatePlugin(String s, PluginEvaluationOptions pluginEvaluationOptions) {
- return instance.evaluatePlugin(s, pluginEvaluationOptions);
- }
-
- @Override
- public void archiveDataSets(String s, List<? extends IDataSetId> list, DataSetArchiveOptions dataSetArchiveOptions) {
- instance.archiveDataSets(s, list, dataSetArchiveOptions);
- }
-
- @Override
- public void unarchiveDataSets(String s, List<? extends IDataSetId> list, DataSetUnarchiveOptions dataSetUnarchiveOptions) {
- instance.unarchiveDataSets(s, list, dataSetUnarchiveOptions);
- }
-
- @Override
- public void lockDataSets(String s, List<? extends IDataSetId> list, DataSetLockOptions dataSetLockOptions) {
- instance.lockDataSets(s, list, dataSetLockOptions);
- }
-
- @Override
- public void unlockDataSets(String s, List<? extends IDataSetId> list, DataSetUnlockOptions dataSetUnlockOptions) {
- instance.unlockDataSets(s, list, dataSetUnlockOptions);
- }
-
- @Override
- public IOperationExecutionResults executeOperations(String s, List<? extends IOperation> list, IOperationExecutionOptions iOperationExecutionOptions) {
- return instance.executeOperations(s, list, iOperationExecutionOptions);
- }
-
- @Override
- public Map<String, String> getServerInformation(String s) {
- return instance.getServerInformation(s);
- }
-
- @Override
- public List<String> createPermIdStrings(String s, int i) {
- return instance.createPermIdStrings(s, i);
- }
-
- @Override
- public List<String> createCodes(String s, String s1, EntityKind entityKind, int i) {
- return instance.createCodes(s, s1, entityKind, i);
- }
-
- @Override
- public int getMajorVersion() {
- return instance.getMajorVersion();
- }
-
- @Override
- public int getMinorVersion() {
- return instance.getMinorVersion();
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/SQLExecutor.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/SQLExecutor.java
deleted file mode 100644
index b95e3a45944a4b17c223439c7df658b87ce98d13..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/SQLExecutor.java
+++ /dev/null
@@ -1,145 +0,0 @@
-/*
- * Copyright 2011 ETH Zuerich, CISD
- *
- * Licensed under the Apache License, Version 2.0 (the "License");
- * you may not use this file except in compliance with the License.
- * You may obtain a copy of the License at
- *
- * http://www.apache.org/licenses/LICENSE-2.0
- *
- * Unless required by applicable law or agreed to in writing, software
- * distributed under the License is distributed on an "AS IS" BASIS,
- * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
- * See the License for the specific language governing permissions and
- * limitations under the License.
- */
-
-package ch.ethz.sis.benchmark.impl.jdbc;
-
-import ch.ethz.sis.logging.LogManager;
-import ch.ethz.sis.logging.Logger;
-
-import java.sql.*;
-import java.util.Date;
-import java.util.*;
-
-public class SQLExecutor
-{
-
- private static Logger logger = LogManager.getLogger(SQLExecutor.class);
-
- private static final Map<Class<?>, String> TYPE_CONVERSION_MAP = new HashMap<>();
-
- static
- {
- TYPE_CONVERSION_MAP.put(Boolean.class, "boolean");
-
- TYPE_CONVERSION_MAP.put(Character.class, "character");
- TYPE_CONVERSION_MAP.put(String.class, "varchar");
-
- TYPE_CONVERSION_MAP.put(Double.class, "float8");
- TYPE_CONVERSION_MAP.put(Float.class, "float4");
-
- TYPE_CONVERSION_MAP.put(Long.class, "int8");
- TYPE_CONVERSION_MAP.put(Integer.class, "int4");
- TYPE_CONVERSION_MAP.put(Short.class, "int2");
- TYPE_CONVERSION_MAP.put(Byte.class, "int2");
- }
-
- public static int executeUpdate(
- final Connection connection,
- final String sqlUpdate,
- final List<List<Object>> parametersBatch) {
- logger.info("QUERY: " + sqlUpdate);
-
- int results = 0;
- try (final PreparedStatement preparedStatement = connection.prepareStatement(sqlUpdate))
- {
- for (List<Object> parameters : parametersBatch) {
- setArgsForPreparedStatement(parameters, preparedStatement);
- preparedStatement.addBatch();
- int[] batchResults = preparedStatement.executeBatch();
- for (int result : batchResults) {
- results += result;
- }
- }
- } catch (SQLException ex)
- {
- throw new RuntimeException(ex);
- }
- logger.info("RESULTS COUNT: " + results);
- return results;
- }
-
- public static List<Map<String, Object>> executeQuery(final Connection connection, final String sqlQuery, final List<Object> parameters) {
-
- logger.info("QUERY: " + sqlQuery);
-
- final List<Map<String, Object>> results = new ArrayList<>();
- try (final PreparedStatement preparedStatement = connection.prepareStatement(sqlQuery))
- {
- setArgsForPreparedStatement(parameters, preparedStatement);
-
- try (final ResultSet resultSet = preparedStatement.executeQuery())
- {
- final ResultSetMetaData resultSetMetaData = resultSet.getMetaData();
- final int columnCount = resultSetMetaData.getColumnCount();
- final List<String> columnNames = new ArrayList<>(columnCount);
- for (int index = 0; index < columnCount; index++)
- {
- columnNames.add(resultSetMetaData.getColumnName(index + 1));
- }
-
- while (resultSet.next())
- {
- final Map<String, Object> row = new HashMap<>();
- for (final String columnName : columnNames)
- {
- row.put(columnName, resultSet.getObject(columnName));
- }
- results.add(row);
- }
- }
- } catch (SQLException ex)
- {
- throw new RuntimeException(ex);
- }
-
- logger.info("RESULTS COUNT: " + results.size());
- return results;
- }
-
- private static void setArgsForPreparedStatement(final List<Object> args, final PreparedStatement preparedStatement) throws SQLException
- {
- for (int index = 0; index < args.size(); index++)
- {
- final Object object = args.get(index);
- if (object != null && object.getClass().isArray())
- {
- final Object[] objectArray = (Object[]) object;
- final Class<?> arrayObjectType = object.getClass().getComponentType();
- final String psqlType = TYPE_CONVERSION_MAP.get(arrayObjectType);
-
- if (psqlType == null)
- {
- throw new IllegalArgumentException("JDBCSQLExecutor don't support arrays of type: " + object.getClass().getName()
- + " - With elements of type: " + arrayObjectType.getName() + " - Data: " + Arrays.toString(objectArray));
- }
-
- preparedStatement.setArray(index + 1, preparedStatement.getConnection().createArrayOf(psqlType, objectArray));
- } else if (object instanceof Date)
- {
- final Date date = (Date) object;
- preparedStatement.setTimestamp(index + 1, new Timestamp(date.getTime()));
- } else if (object instanceof Calendar)
- {
- final Calendar calendar = (Calendar) object;
- preparedStatement.setTimestamp(index + 1, new Timestamp(calendar.getTimeInMillis()), calendar);
- } else
- {
- preparedStatement.setObject(index + 1, object);
- }
- }
- }
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/SQLQueries.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/SQLQueries.java
deleted file mode 100644
index 34e353a7673eb2f47b35bea007fcdb74d39c2c5b..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/impl/jdbc/SQLQueries.java
+++ /dev/null
@@ -1,231 +0,0 @@
-package ch.ethz.sis.benchmark.impl.jdbc;
-
-import java.sql.Connection;
-import java.util.*;
-
-public class SQLQueries {
-
- //
- // Help Query methods
- //
-
- public static Map<String, Long> getIds(Connection connection, String QUERY, Collection<String> codes) {
- Map<String, Long> idsByCode = new HashMap<>();
-
- ArrayList arg = new ArrayList();
- arg.add(codes.toArray(new String[0]));
-
- List<Map<String, Object>> idsWithCodes = SQLExecutor.executeQuery(connection, QUERY, arg);
- for (Map<String, Object> idsWithCode:idsWithCodes) {
- idsByCode.put((String) idsWithCode.get("code"), (Long) idsWithCode.get("id"));
- }
-
- return idsByCode;
- }
-
- //
- // Query methods
- //
-
- private static final String SELECT_SPACES = "SELECT id, code FROM spaces WHERE code IN(SELECT * FROM unnest(?))";
-
- public static Map<String, Long> getSpaceIds(Connection connection, Collection<String> spaceCodes) {
- return getIds(connection, SELECT_SPACES, spaceCodes);
- }
-
- private static final String SELECT_PROJECTS = "SELECT id, code, space_id FROM projects WHERE FALSE";
-
- public static Map<String, Long> getProjectIds(Connection connection, Collection<String> projectIdentifiers, Map<String, Long> spaceIdsByCode) {
- Map<Long, String> spaceCodeByIds = revertMap(spaceIdsByCode);
- Map<String, Long> projectIdsByIdentifier = new HashMap<>();
-
- StringBuilder SELECT_PROJECTS_WITH_ORS = new StringBuilder(SELECT_PROJECTS);
- for (String projectIdentifier:projectIdentifiers) {
- Long space_id = spaceIdsByCode.get(projectIdentifier.split("/")[1]);
- String code = projectIdentifier.split("/")[2];
- SELECT_PROJECTS_WITH_ORS.append(" OR space_id = " + space_id + " AND code = '" + code + "'");
- }
- List<Map<String, Object>> projectIdsWithCodes = SQLExecutor.executeQuery(connection, SELECT_PROJECTS_WITH_ORS.toString(), Arrays.asList());
- for (Map<String, Object> projectIdsWithCode:projectIdsWithCodes) {
- projectIdsByIdentifier.put("/" + spaceCodeByIds.get(projectIdsWithCode.get("space_id")) + "/" + projectIdsWithCode.get("code"), (Long) projectIdsWithCode.get("id"));
- }
-
- return projectIdsByIdentifier;
- }
-
- private static final String SELECT_EXPERIMENTS = "SELECT id, code, proj_id FROM experiments_all WHERE FALSE";
-
- public static Map<String, Long> getExperimentIds(Connection connection, Collection<String> experimentIdentifiers, Map<String, Long> projectIdsByIdentifier) {
- Map<Long, String> projectIdentifiersByIds = revertMap(projectIdsByIdentifier);
- Map<String, Long> experimentIdsByIdentifier = new HashMap<>();
-
- StringBuilder SELECT_EXPERIMENTS_WITH_ORS = new StringBuilder(SELECT_EXPERIMENTS);
- for (String experimentIdentifier:experimentIdentifiers) {
- String projectIdentifier = "/" + experimentIdentifier.split("/")[1] + "/" + experimentIdentifier.split("/")[2];
- Long proj_id = projectIdsByIdentifier.get(projectIdentifier);
- String code = experimentIdentifier.split("/")[3];
- SELECT_EXPERIMENTS_WITH_ORS.append(" OR (proj_id = " + proj_id + " AND code = '" + code + "')");
- }
- List<Map<String, Object>> experimentIdsWithCodes = SQLExecutor.executeQuery(connection, SELECT_EXPERIMENTS_WITH_ORS.toString(), Arrays.asList());
- for (Map<String, Object> experimentIdsWithCode:experimentIdsWithCodes) {
- experimentIdsByIdentifier.put(projectIdentifiersByIds.get(experimentIdsWithCode.get("proj_id")) + "/" + experimentIdsWithCode.get("code"), (Long) experimentIdsWithCode.get("id"));
- }
-
- return experimentIdsByIdentifier;
- }
-
- private static final String SELECT_TYPES = "SELECT id, code FROM sample_types WHERE code IN(SELECT * FROM unnest(?))";
-
- public static Map<String, Long> getTypeIds(Connection connection, Collection<String> sampleTypeCodes) {
- return getIds(connection, SELECT_TYPES, sampleTypeCodes);
- }
-
- private static final String SELECT_PROPERTY_TYPES = "SELECT id, code FROM property_types WHERE code IN(SELECT * FROM unnest(?))";
-
- public static Map<String, Long> getPropertyTypeIds(Connection connection, Collection<String> propertyTypeCodes) {
- return getIds(connection, SELECT_PROPERTY_TYPES, propertyTypeCodes);
- }
-
- private static final String SELECT_PERSON = "SELECT id FROM persons WHERE user_id = ?";
-
- public static Long getPersonId(Connection connection, String user_id) {
- Map<String, Object> personId = SQLExecutor.executeQuery(connection, SELECT_PERSON, Arrays.asList(user_id)).get(0);
- return (Long) personId.get("id");
- }
-
-// /*
-// * samples_all table has several CONSTRAINTS that get executed on INSERT that chain more inserts that ara impossible due to a missing FK
-// * Because of that, all this contraints are actually doing nothing more than forcing the system to first insert the row and then do an update
-// *
-// * Example:
-// * INSERT INTO samples_all(id, perm_id, code, proj_id, expe_id, saty_id, registration_timestamp, modification_timestamp, pers_id_registerer, pers_id_modifier, space_id) VALUES(nextval('sample_id_seq'), 'fd4e9cec-ed92-455a-accd-8ff41ed83c6b', 'SAMPLE_lcd_nascar_adams', 17, 17, 2, NOW(), NOW(), 2, 2, 14) was aborted: ERROR: insert or update on table "experiment_relationships_history" violates foreign key constraint "exrelh_samp_fk"
-// * Detail: Key (samp_id)=(6) is not present in table "samples_all". Call getNextException to see other errors in the batch.
-// */
-//
-// private static final String SAMPLE_INITIAL_INSERT = "INSERT INTO samples_all(id, perm_id, code, saty_id, registration_timestamp, modification_timestamp, pers_id_registerer, pers_id_modifier) VALUES(?, ?, ?, ?, NOW(), NOW(), ?, ?)";
-//
-// private static final String SAMPLE_UPDATE_INSERT = "UPDATE samples_all SET proj_id = ?, expe_id = ?, space_id = ? WHERE id = ?";
-//
-// // private static final String SAMPLE_INSERT = "INSERT INTO samples_all(id, perm_id, code, proj_id, expe_id, saty_id, registration_timestamp, modification_timestamp, pers_id_registerer, pers_id_modifier, space_id) VALUES(?, ?, ?, ?, ?, ?, NOW(), NOW(), ?, ?, ?)";
-//
-// public static int insertSamplesOLD(Connection connection, List<List<Object>> samplesInsertArgs) {
-// List<List<Object>> SAMPLE_INITIAL_INSERT_ARGS = new ArrayList<>();
-// List<List<Object>> SAMPLE_UPDATE_INSERT_ARGS = new ArrayList<>();
-//
-// // perm_id, code, proj_id, expe_id, saty_id, pers_id_registerer, pers_id_modifier, space_id
-// for (List<Object> sampleInsertArgs:samplesInsertArgs) {
-// // perm_id, code, saty_id, pers_id_registerer, pers_id_modifier
-// List<Object> SAMPLE_INITIAL_INSERT_ARG = new ArrayList<>();
-// SAMPLE_INITIAL_INSERT_ARG.add(sampleInsertArgs.get(0));
-// SAMPLE_INITIAL_INSERT_ARG.add(sampleInsertArgs.get(1));
-// SAMPLE_INITIAL_INSERT_ARG.add(sampleInsertArgs.get(2));
-// SAMPLE_INITIAL_INSERT_ARG.add(sampleInsertArgs.get(5));
-// SAMPLE_INITIAL_INSERT_ARG.add(sampleInsertArgs.get(6));
-// SAMPLE_INITIAL_INSERT_ARG.add(sampleInsertArgs.get(7));
-// SAMPLE_INITIAL_INSERT_ARGS.add(SAMPLE_INITIAL_INSERT_ARG);
-//
-// // proj_id = ?, expe_id, = ?, space_id = ? WHERE permId = ?
-// List<Object> SAMPLE_UPDATE_INSERT_ARG = new ArrayList<>();
-// SAMPLE_UPDATE_INSERT_ARG.add(sampleInsertArgs.get(3));
-// SAMPLE_UPDATE_INSERT_ARG.add(sampleInsertArgs.get(4));
-// SAMPLE_UPDATE_INSERT_ARG.add(sampleInsertArgs.get(8));
-// SAMPLE_UPDATE_INSERT_ARG.add(sampleInsertArgs.get(0));
-// SAMPLE_UPDATE_INSERT_ARGS.add(SAMPLE_UPDATE_INSERT_ARG);
-// }
-// try {
-// connection.setAutoCommit(false);
-// SQLExecutor.executeUpdate(connection, SAMPLE_INITIAL_INSERT, SAMPLE_INITIAL_INSERT_ARGS);
-// SQLExecutor.executeUpdate(connection, SAMPLE_UPDATE_INSERT, SAMPLE_UPDATE_INSERT_ARGS);
-// connection.commit();
-// } catch (Exception ex) {
-// try {
-// connection.rollback();
-// } catch (Exception ex2) {}
-// } finally {
-// try {
-// connection.setAutoCommit(true);
-// } catch (Exception ex3) {}
-// }
-//
-// return samplesInsertArgs.size();
-// }
-
- private static final String SAMPLE_INSERT_HIBERNATE = "insert into samples (code, samp_id_part_of, cont_frozen, del_id, expe_frozen, expe_id, frozen, frozen_for_children, frozen_for_comp, frozen_for_data, frozen_for_parents, modification_timestamp, pers_id_modifier, orig_del, perm_id, proj_id, proj_frozen, pers_id_registerer, saty_id, space_id, space_frozen, version, id) values (?, NULL, FALSE, NULL, FALSE, ?, FALSE, FALSE, FALSE, FALSE, FALSE, NOW(), ?, NULL, ?, ?, FALSE, ?, ?, ?, FALSE, 1, ?)";
-
- // code, expe_id, pers_id_modifier, perm_id, proj_id, pers_id_registerer, saty_id, space_id, version, id
-
- public static int insertSamples(Connection connection, List<List<Object>> samplesInsertArgs) {
- List<List<Object>> SAMPLE_HIBERNATE_INSERT_ARGS = new ArrayList<>();
- for (List<Object> sampleInsertArgs:samplesInsertArgs) {
- List<Object> SAMPLE_HIBERNATE_INSERT_ARG = new ArrayList<>();
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(2));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(4));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(6));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(1));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(3));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(6));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(5));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(8));
- SAMPLE_HIBERNATE_INSERT_ARG.add(sampleInsertArgs.get(0));
- SAMPLE_HIBERNATE_INSERT_ARGS.add(SAMPLE_HIBERNATE_INSERT_ARG);
- }
- SQLExecutor.executeUpdate(connection, SAMPLE_INSERT_HIBERNATE, SAMPLE_HIBERNATE_INSERT_ARGS);
-
- return samplesInsertArgs.size();
- }
-
- private static final String NEXT_SAMPLE_IDS = "SELECT setval('sample_id_seq', nextval('sample_id_seq') + 5000, true)";
-
- public static List<Long> nextSampleIds(Connection connection, int number) {
- List<Map<String, Object>> lastRes = SQLExecutor.executeQuery(connection, NEXT_SAMPLE_IDS, Arrays.asList());
- long last = (Long) lastRes.get(0).get("setval");
- long first = last - number;
- List<Long> results = new ArrayList<>(number);
- for (int i = 0; i < number; i++) {
- results.add(first + 1 + i);
- }
- return results;
- }
-
- private static final String SELECT_STPT = "SELECT id, saty_id, prty_id FROM sample_type_property_types WHERE FALSE";
-
- public static Map<String, Long> getSampleTypePropertyTypeIds(Connection connection, Collection<String> sampleType_propertyTypes) {
- Map<String, Long> sampleTypePropertyTypeIdsByIdentifier = new HashMap<>();
-
- StringBuilder SELECT_STPT_WITH_ORS = new StringBuilder(SELECT_STPT);
- for (String sampleType_propertyType:sampleType_propertyTypes) {
- SELECT_STPT_WITH_ORS.append(" OR (saty_id = " + sampleType_propertyType.split(":")[0] + " AND prty_id = " + sampleType_propertyType.split(":")[1] + ")");
- }
-
- List<Map<String, Object>> sampleTypePropertyTypeIdsWithReferences = SQLExecutor.executeQuery(connection, SELECT_STPT_WITH_ORS.toString(), Arrays.asList());
- for (Map<String, Object> sampleTypePropertyTypeIdsWithReference:sampleTypePropertyTypeIdsWithReferences) {
- sampleTypePropertyTypeIdsByIdentifier.put(
- sampleTypePropertyTypeIdsWithReference.get("saty_id") + ":" + sampleTypePropertyTypeIdsWithReference.get("prty_id")
- ,
- (Long) sampleTypePropertyTypeIdsWithReference.get("id")
- );
- }
-
- return sampleTypePropertyTypeIdsByIdentifier;
- }
-
- private static final String SAMPLE_PROPERTIES_INSERT = "INSERT INTO sample_properties(id, samp_id, stpt_id, value, registration_timestamp, modification_timestamp, pers_id_registerer, pers_id_author) VALUES(nextval('sample_property_id_seq'), ?, ?, ?, NOW(), NOW(), ?, ?)";
-
- public static int insertSamplesProperties(Connection connection, List<List<Object>> samplesPropertiesArgs) {
- SQLExecutor.executeUpdate(connection, SAMPLE_PROPERTIES_INSERT, samplesPropertiesArgs);
- return samplesPropertiesArgs.size();
- }
-
- //
- // Utility methods
- //
-
- private static <VALUE, KEY> Map<VALUE,KEY> revertMap(Map<KEY, VALUE> map) {
- Map<VALUE, KEY> rMap = new HashMap<>(map.size());
- for (KEY key:map.keySet()) {
- rMap.put(map.get(key), key);
- }
- return rMap;
- }
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/RandomValueGenerator.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/RandomValueGenerator.java
deleted file mode 100644
index b1b2bb5d95d6d76b8795448f2d4c20dcc52c0b20..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/RandomValueGenerator.java
+++ /dev/null
@@ -1,36 +0,0 @@
-package ch.ethz.sis.benchmark.util;
-
-import java.util.ArrayList;
-import java.util.Collection;
-import java.util.Collections;
-import java.util.List;
-import java.util.Set;
-import java.util.concurrent.ConcurrentHashMap;
-import java.util.concurrent.ThreadLocalRandom;
-
-public class RandomValueGenerator<V> {
- public List<V> valuesAsList = new ArrayList<>();
- public Set<V> valuesAsMap = Collections.newSetFromMap(new ConcurrentHashMap<>());
-
- public synchronized void add(V value) {
- if(!valuesAsMap.contains(value)) {
- valuesAsMap.add(value);
- valuesAsList.add(value);
- }
- }
-
- public synchronized void addAll(Collection<V> values) {
- for(V value:values) {
- add(value);
- }
- }
-
- public synchronized boolean contains(V value) {
- return valuesAsMap.contains(value);
- }
-
- public synchronized V getRandom() {
- return valuesAsList.get(ThreadLocalRandom.current().nextInt(0, valuesAsList.size()));
- }
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/RandomWord.java b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/RandomWord.java
deleted file mode 100644
index 007b8911e77471080532e772b3e3f2bb0c046dbd..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/RandomWord.java
+++ /dev/null
@@ -1,30 +0,0 @@
-package ch.ethz.sis.benchmark.util;
-
-import java.io.BufferedReader;
-import java.io.IOException;
-import java.io.InputStream;
-import java.io.InputStreamReader;
-
-public class RandomWord {
-
- private static final RandomValueGenerator<String> words = new RandomValueGenerator<>();
-
- static {
- InputStream in = RandomWord.class.getResourceAsStream("google-10000-english.txt");
- BufferedReader reader = new BufferedReader(new InputStreamReader(in));
- String line = null;
- try {
- while((line = reader.readLine()) != null) {
- words.add(line);
- }
- } catch (IOException e) {
- e.printStackTrace();
- }
- }
-
- private RandomWord() {}
-
- public static String getRandomWord() {
- return words.getRandom();
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/google-10000-english.txt b/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/google-10000-english.txt
deleted file mode 100644
index 3164d7bf96a91257fc384c02d74e9b6b93cb08f6..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/benchmark/util/google-10000-english.txt
+++ /dev/null
@@ -1,10000 +0,0 @@
-the
-of
-and
-to
-a
-in
-for
-is
-on
-that
-by
-this
-with
-i
-you
-it
-not
-or
-be
-are
-from
-at
-as
-your
-all
-have
-new
-more
-an
-was
-we
-will
-home
-can
-us
-about
-if
-page
-my
-has
-search
-free
-but
-our
-one
-other
-do
-no
-information
-time
-they
-site
-he
-up
-may
-what
-which
-their
-news
-out
-use
-any
-there
-see
-only
-so
-his
-when
-contact
-here
-business
-who
-web
-also
-now
-help
-get
-pm
-view
-online
-c
-e
-first
-am
-been
-would
-how
-were
-me
-s
-services
-some
-these
-click
-its
-like
-service
-x
-than
-find
-price
-date
-back
-top
-people
-had
-list
-name
-just
-over
-state
-year
-day
-into
-email
-two
-health
-n
-world
-re
-next
-used
-go
-b
-work
-last
-most
-products
-music
-buy
-data
-make
-them
-should
-product
-system
-post
-her
-city
-t
-add
-policy
-number
-such
-please
-available
-copyright
-support
-message
-after
-best
-software
-then
-jan
-good
-video
-well
-d
-where
-info
-rights
-public
-books
-high
-school
-through
-m
-each
-links
-she
-review
-years
-order
-very
-privacy
-book
-items
-company
-r
-read
-group
-sex
-need
-many
-user
-said
-de
-does
-set
-under
-general
-research
-university
-january
-mail
-full
-map
-reviews
-program
-life
-know
-games
-way
-days
-management
-p
-part
-could
-great
-united
-hotel
-real
-f
-item
-international
-center
-ebay
-must
-store
-travel
-comments
-made
-development
-report
-off
-member
-details
-line
-terms
-before
-hotels
-did
-send
-right
-type
-because
-local
-those
-using
-results
-office
-education
-national
-car
-design
-take
-posted
-internet
-address
-community
-within
-states
-area
-want
-phone
-dvd
-shipping
-reserved
-subject
-between
-forum
-family
-l
-long
-based
-w
-code
-show
-o
-even
-black
-check
-special
-prices
-website
-index
-being
-women
-much
-sign
-file
-link
-open
-today
-technology
-south
-case
-project
-same
-pages
-uk
-version
-section
-own
-found
-sports
-house
-related
-security
-both
-g
-county
-american
-photo
-game
-members
-power
-while
-care
-network
-down
-computer
-systems
-three
-total
-place
-end
-following
-download
-h
-him
-without
-per
-access
-think
-north
-resources
-current
-posts
-big
-media
-law
-control
-water
-history
-pictures
-size
-art
-personal
-since
-including
-guide
-shop
-directory
-board
-location
-change
-white
-text
-small
-rating
-rate
-government
-children
-during
-usa
-return
-students
-v
-shopping
-account
-times
-sites
-level
-digital
-profile
-previous
-form
-events
-love
-old
-john
-main
-call
-hours
-image
-department
-title
-description
-non
-k
-y
-insurance
-another
-why
-shall
-property
-class
-cd
-still
-money
-quality
-every
-listing
-content
-country
-private
-little
-visit
-save
-tools
-low
-reply
-customer
-december
-compare
-movies
-include
-college
-value
-article
-york
-man
-card
-jobs
-provide
-j
-food
-source
-author
-different
-press
-u
-learn
-sale
-around
-print
-course
-job
-canada
-process
-teen
-room
-stock
-training
-too
-credit
-point
-join
-science
-men
-categories
-advanced
-west
-sales
-look
-english
-left
-team
-estate
-box
-conditions
-select
-windows
-photos
-gay
-thread
-week
-category
-note
-live
-large
-gallery
-table
-register
-however
-june
-october
-november
-market
-library
-really
-action
-start
-series
-model
-features
-air
-industry
-plan
-human
-provided
-tv
-yes
-required
-second
-hot
-accessories
-cost
-movie
-forums
-march
-la
-september
-better
-say
-questions
-july
-yahoo
-going
-medical
-test
-friend
-come
-dec
-server
-pc
-study
-application
-cart
-staff
-articles
-san
-feedback
-again
-play
-looking
-issues
-april
-never
-users
-complete
-street
-topic
-comment
-financial
-things
-working
-against
-standard
-tax
-person
-below
-mobile
-less
-got
-blog
-party
-payment
-equipment
-login
-student
-let
-programs
-offers
-legal
-above
-recent
-park
-stores
-side
-act
-problem
-red
-give
-memory
-performance
-social
-q
-august
-quote
-language
-story
-sell
-options
-experience
-rates
-create
-key
-body
-young
-america
-important
-field
-few
-east
-paper
-single
-ii
-age
-activities
-club
-example
-girls
-additional
-password
-z
-latest
-something
-road
-gift
-question
-changes
-night
-ca
-hard
-texas
-oct
-pay
-four
-poker
-status
-browse
-issue
-range
-building
-seller
-court
-february
-always
-result
-audio
-light
-write
-war
-nov
-offer
-blue
-groups
-al
-easy
-given
-files
-event
-release
-analysis
-request
-fax
-china
-making
-picture
-needs
-possible
-might
-professional
-yet
-month
-major
-star
-areas
-future
-space
-committee
-hand
-sun
-cards
-problems
-london
-washington
-meeting
-rss
-become
-interest
-id
-child
-keep
-enter
-california
-porn
-share
-similar
-garden
-schools
-million
-added
-reference
-companies
-listed
-baby
-learning
-energy
-run
-delivery
-net
-popular
-term
-film
-stories
-put
-computers
-journal
-reports
-co
-try
-welcome
-central
-images
-president
-notice
-god
-original
-head
-radio
-until
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-accompanying
-vatican
-brutal
-learners
-gd
-selective
-arbitration
-configuring
-token
-editorials
-zinc
-sacrifice
-seekers
-guru
-isa
-removable
-convergence
-yields
-gibraltar
-levy
-suited
-numeric
-anthropology
-skating
-kinda
-aberdeen
-emperor
-grad
-malpractice
-dylan
-bras
-belts
-blacks
-educated
-rebates
-reporters
-burke
-proudly
-pix
-necessity
-rendering
-mic
-inserted
-pulling
-basename
-kyle
-obesity
-curves
-suburban
-touring
-clara
-vertex
-bw
-hepatitis
-nationally
-tomato
-andorra
-waterproof
-expired
-mj
-travels
-flush
-waiver
-pale
-specialties
-hayes
-humanitarian
-invitations
-functioning
-delight
-survivor
-garcia
-cingular
-economies
-alexandria
-bacterial
-moses
-counted
-undertake
-declare
-continuously
-johns
-valves
-gaps
-impaired
-achievements
-donors
-tear
-jewel
-teddy
-lf
-convertible
-ata
-teaches
-ventures
-nil
-bufing
-stranger
-tragedy
-julian
-nest
-pam
-dryer
-painful
-velvet
-tribunal
-ruled
-nato
-pensions
-prayers
-funky
-secretariat
-nowhere
-cop
-paragraphs
-gale
-joins
-adolescent
-nominations
-wesley
-dim
-lately
-cancelled
-scary
-mattress
-mpegs
-brunei
-likewise
-banana
-introductory
-slovak
-cakes
-stan
-reservoir
-occurrence
-idol
-bloody
-mixer
-remind
-wc
-worcester
-sbjct
-demographic
-charming
-mai
-tooth
-disciplinary
-annoying
-respected
-stays
-disclose
-affair
-drove
-washer
-upset
-restrict
-springer
-beside
-mines
-portraits
-rebound
-logan
-mentor
-interpreted
-evaluations
-fought
-baghdad
-elimination
-metres
-hypothetical
-immigrants
-complimentary
-helicopter
-pencil
-freeze
-hk
-performer
-abu
-titled
-commissions
-sphere
-powerseller
-moss
-ratios
-concord
-graduated
-endorsed
-ty
-surprising
-walnut
-lance
-ladder
-italia
-unnecessary
-dramatically
-liberia
-sherman
-cork
-maximize
-cj
-hansen
-senators
-workout
-mali
-yugoslavia
-bleeding
-characterization
-colon
-likelihood
-lanes
-purse
-fundamentals
-contamination
-mtv
-endangered
-compromise
-masturbation
-optimize
-stating
-dome
-caroline
-leu
-expiration
-namespace
-align
-peripheral
-bless
-engaging
-negotiation
-crest
-opponents
-triumph
-nominated
-confidentiality
-electoral
-changelog
-welding
-orgasm
-deferred
-alternatively
-heel
-alloy
-condos
-plots
-polished
-yang
-gently
-greensboro
-tulsa
-locking
-casey
-controversial
-draws
-fridge
-blanket
-bloom
-qc
-simpsons
-lou
-elliott
-recovered
-fraser
-justify
-upgrading
-blades
-pgp
-loops
-surge
-frontpage
-trauma
-aw
-tahoe
-advert
-possess
-demanding
-defensive
-sip
-flashers
-subaru
-forbidden
-tf
-vanilla
-programmers
-pj
-monitored
-installations
-deutschland
-picnic
-souls
-arrivals
-spank
-cw
-practitioner
-motivated
-wr
-dumb
-smithsonian
-hollow
-vault
-securely
-examining
-fioricet
-groove
-revelation
-rg
-pursuit
-delegation
-wires
-bl
-dictionaries
-mails
-backing
-greenhouse
-sleeps
-vc
-blake
-transparency
-dee
-travis
-wx
-endless
-figured
-orbit
-currencies
-niger
-bacon
-survivors
-positioning
-heater
-colony
-cannon
-circus
-promoted
-forbes
-mae
-moldova
-mel
-descending
-paxil
-spine
-trout
-enclosed
-feat
-temporarily
-ntsc
-cooked
-thriller
-transmit
-apnic
-fatty
-gerald
-pressed
-frequencies
-scanned
-reflections
-hunger
-mariah
-sic
-municipality
-usps
-joyce
-detective
-surgeon
-cement
-experiencing
-fireplace
-endorsement
-bg
-planners
-disputes
-textiles
-missile
-intranet
-closes
-seq
-psychiatry
-persistent
-deborah
-conf
-marco
-assists
-summaries
-glow
-gabriel
-auditor
-wma
-aquarium
-violin
-prophet
-cir
-bracket
-looksmart
-isaac
-oxide
-oaks
-magnificent
-erik
-colleague
-naples
-promptly
-modems
-adaptation
-hu
-harmful
-paintball
-prozac
-sexually
-enclosure
-acm
-dividend
-newark
-kw
-paso
-glucose
-phantom
-norm
-playback
-supervisors
-westminster
-turtle
-ips
-distances
-absorption
-treasures
-dsc
-warned
-neural
-ware
-fossil
-mia
-hometown
-badly
-transcripts
-apollo
-wan
-disappointed
-persian
-continually
-communist
-collectible
-handmade
-greene
-entrepreneurs
-robots
-grenada
-creations
-jade
-scoop
-acquisitions
-foul
-keno
-gtk
-earning
-mailman
-sanyo
-nested
-biodiversity
-excitement
-somalia
-movers
-verbal
-blink
-presently
-seas
-carlo
-workflow
-mysterious
-novelty
-bryant
-tiles
-voyuer
-librarian
-subsidiaries
-switched
-stockholm
-tamil
-garmin
-ru
-pose
-fuzzy
-indonesian
-grams
-therapist
-richards
-mrna
-budgets
-toolkit
-promising
-relaxation
-goat
-render
-carmen
-ira
-sen
-thereafter
-hardwood
-erotica
-temporal
-sail
-forge
-commissioners
-dense
-dts
-brave
-forwarding
-qt
-awful
-nightmare
-airplane
-reductions
-southampton
-istanbul
-impose
-organisms
-sega
-telescope
-viewers
-asbestos
-portsmouth
-cdna
-meyer
-enters
-pod
-savage
-advancement
-wu
-harassment
-willow
-resumes
-bolt
-gage
-throwing
-existed
-whore
-generators
-lu
-wagon
-barbie
-dat
-favour
-soa
-knock
-urge
-smtp
-generates
-potatoes
-thorough
-replication
-inexpensive
-kurt
-receptors
-peers
-roland
-optimum
-neon
-interventions
-quilt
-huntington
-creature
-ours
-mounts
-syracuse
-internship
-lone
-refresh
-aluminium
-snowboard
-beastality
-webcast
-michel
-evanescence
-subtle
-coordinated
-notre
-shipments
-maldives
-stripes
-firmware
-antarctica
-cope
-shepherd
-lm
-canberra
-cradle
-chancellor
-mambo
-lime
-kirk
-flour
-controversy
-legendary
-bool
-sympathy
-choir
-avoiding
-beautifully
-blond
-expects
-cho
-jumping
-fabrics
-antibodies
-polymer
-hygiene
-wit
-poultry
-virtue
-burst
-examinations
-surgeons
-bouquet
-immunology
-promotes
-mandate
-wiley
-departmental
-bbs
-spas
-ind
-corpus
-johnston
-terminology
-gentleman
-fibre
-reproduce
-convicted
-shades
-jets
-indices
-roommates
-adware
-qui
-intl
-threatening
-spokesman
-zoloft
-activists
-frankfurt
-prisoner
-daisy
-halifax
-encourages
-ultram
-cursor
-assembled
-earliest
-donated
-stuffed
-restructuring
-insects
-terminals
-crude
-morrison
-maiden
-simulations
-cz
-sufficiently
-examines
-viking
-myrtle
-bored
-cleanup
-yarn
-knit
-conditional
-mug
-crossword
-bother
-budapest
-conceptual
-knitting
-attacked
-hl
-bhutan
-liechtenstein
-mating
-compute
-redhead
-arrives
-translator
-automobiles
-tractor
-allah
-continent
-ob
-unwrap
-fares
-longitude
-resist
-challenged
-telecharger
-hoped
-pike
-safer
-insertion
-instrumentation
-ids
-hugo
-wagner
-constraint
-groundwater
-touched
-strengthening
-cologne
-gzip
-wishing
-ranger
-smallest
-insulation
-newman
-marsh
-ricky
-ctrl
-scared
-theta
-infringement
-bent
-laos
-subjective
-monsters
-asylum
-lightbox
-robbie
-stake
-cocktail
-outlets
-swaziland
-varieties
-arbor
-mediawiki
-configurations
-poison
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/json/JSONObjectMapper.java b/openbis_benchmark/src/main/java/ch/ethz/sis/json/JSONObjectMapper.java
deleted file mode 100644
index 38b5b4aa399164724c9eea2633072b676fc34906..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/json/JSONObjectMapper.java
+++ /dev/null
@@ -1,12 +0,0 @@
-package ch.ethz.sis.json;
-
-import java.io.FileInputStream;
-
-public interface JSONObjectMapper
-{
-
- <T> T readValue(FileInputStream src, Class<T> valueType) throws Exception;
-
- byte[] writeValue(Object value) throws Exception;
-
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/json/jackson/JacksonObjectMapper.java b/openbis_benchmark/src/main/java/ch/ethz/sis/json/jackson/JacksonObjectMapper.java
deleted file mode 100644
index 71b9762aa802400797a32b3bdd167635a6e2ae6b..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/json/jackson/JacksonObjectMapper.java
+++ /dev/null
@@ -1,52 +0,0 @@
-package ch.ethz.sis.json.jackson;
-
-import java.io.FileInputStream;
-
-import com.fasterxml.jackson.databind.ObjectMapper;
-import com.fasterxml.jackson.databind.SerializationFeature;
-
-import ch.ethz.sis.json.JSONObjectMapper;
-
-public class JacksonObjectMapper implements JSONObjectMapper
-{
- //
- // Singleton
- //
- private static final JacksonObjectMapper jacksonObjectMapper;
-
- static
- {
- jacksonObjectMapper = new JacksonObjectMapper();
- }
-
- public static JSONObjectMapper getInstance()
- {
- return jacksonObjectMapper;
- }
-
- //
- // Class implementation
- //
-
- private final ObjectMapper objectMapper;
-
- private JacksonObjectMapper()
- {
- objectMapper = new ObjectMapper();
- objectMapper.enable(SerializationFeature.INDENT_OUTPUT);
- objectMapper.configure(SerializationFeature.WRITE_DATES_AS_TIMESTAMPS, false);
- objectMapper.enableDefaultTyping();
- }
-
- @Override
- public <T> T readValue(FileInputStream src, Class<T> valueType) throws Exception
- {
- return objectMapper.readValue(src, valueType);
- }
-
- @Override
- public byte[] writeValue(Object value) throws Exception
- {
- return objectMapper.writeValueAsBytes(value);
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogFactory.java b/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogFactory.java
deleted file mode 100644
index 9ab870f980824f6900083b5db830f021902f62df..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogFactory.java
+++ /dev/null
@@ -1,5 +0,0 @@
-package ch.ethz.sis.logging;
-
-public interface LogFactory {
- <T> Logger getLogger(Class<T> clazz);
-}
\ No newline at end of file
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogFactoryFactory.java b/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogFactoryFactory.java
deleted file mode 100644
index be6bf46db74037158ae32fcbc97369f0641ea561..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogFactoryFactory.java
+++ /dev/null
@@ -1,7 +0,0 @@
-package ch.ethz.sis.logging;
-
-public class LogFactoryFactory {
- public LogFactory create(String logFactoryClass) throws Exception {
- return (LogFactory) Class.forName(logFactoryClass).newInstance();
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogManager.java b/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogManager.java
deleted file mode 100644
index 759a546054bfdd05028509f30b6f7dafac1c77e4..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/LogManager.java
+++ /dev/null
@@ -1,22 +0,0 @@
-package ch.ethz.sis.logging;
-
-public class LogManager {
- private static LogFactory factory;
-
- private static boolean isNotInitialized() {
- return factory == null;
- }
-
- public static void setLogFactory(LogFactory logFactory) {
- if (isNotInitialized()) {
- factory = logFactory;
- }
- }
-
- public static <T> Logger getLogger(Class<T> clazz) {
- if (isNotInitialized()) {
- throw new RuntimeException("LogFactory not initialized.");
- }
- return factory.getLogger(clazz);
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/Logger.java b/openbis_benchmark/src/main/java/ch/ethz/sis/logging/Logger.java
deleted file mode 100644
index b1be892bc49a893b6a08766990cd3c148f530d9a..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/Logger.java
+++ /dev/null
@@ -1,18 +0,0 @@
-package ch.ethz.sis.logging;
-
-
-public interface Logger {
- //
- // Trace API - Used for debugging
- //
- void traceAccess(String message, Object... args);
-
- <R> R traceExit(R arg);
-
- void catching(Throwable ex);
-
- //
- // INFO API
- //
- void info(String message, Object... args);
-}
\ No newline at end of file
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/log4j/Log4J2LogFactory.java b/openbis_benchmark/src/main/java/ch/ethz/sis/logging/log4j/Log4J2LogFactory.java
deleted file mode 100644
index cc1d73a93944ecc4254889f47086ede6e3a97fed..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/log4j/Log4J2LogFactory.java
+++ /dev/null
@@ -1,15 +0,0 @@
-package ch.ethz.sis.logging.log4j;
-
-import org.apache.logging.log4j.LogManager;
-
-import ch.ethz.sis.logging.LogFactory;
-import ch.ethz.sis.logging.Logger;
-
-public class Log4J2LogFactory implements LogFactory
-{
- @Override
- public <T> Logger getLogger(Class<T> clazz)
- {
- return (Logger) new Log4JLogger(LogManager.getLogger(clazz));
- }
-}
\ No newline at end of file
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/log4j/Log4JLogger.java b/openbis_benchmark/src/main/java/ch/ethz/sis/logging/log4j/Log4JLogger.java
deleted file mode 100644
index c69b4d000d2e328b0be8214af8f674e2c84bb092..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/logging/log4j/Log4JLogger.java
+++ /dev/null
@@ -1,59 +0,0 @@
-package ch.ethz.sis.logging.log4j;
-
-import org.apache.logging.log4j.Level;
-import org.apache.logging.log4j.Logger;
-import org.apache.logging.log4j.spi.AbstractLogger;
-import org.apache.logging.log4j.spi.ExtendedLoggerWrapper;
-
-class Log4JLogger extends ExtendedLoggerWrapper implements ch.ethz.sis.logging.Logger
-{
-
- private final String FQCN;
-
- Log4JLogger(final Logger logger)
- {
- super((AbstractLogger) logger, logger.getName(), logger.getMessageFactory());
- FQCN = this.getClass().getName();
- }
-
- @Override
- public void traceAccess(String message, Object... args)
- {
- this.logMessage(FQCN,
- Level.TRACE,
- ENTRY_MARKER,
- entryMsg(message, args),
- (Throwable) null);
- }
-
- @Override
- public <R> R traceExit(R result)
- {
- this.logMessage(FQCN,
- Level.TRACE,
- EXIT_MARKER,
- exitMsg((String) null, result),
- (Throwable) null);
- return result;
- }
-
- @Override
- public void catching(Throwable ex)
- {
- this.logMessage(FQCN,
- Level.TRACE,
- CATCHING_MARKER,
- catchingMsg(ex),
- ex);
- }
-
- @Override
- public void info(String message, Object... args)
- {
- this.logMessage(FQCN,
- Level.INFO,
- null,
- logger.getMessageFactory().newMessage(message, args),
- (Throwable) null);
- }
-}
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/ssl/SslCertificateHelper.java b/openbis_benchmark/src/main/java/ch/ethz/sis/ssl/SslCertificateHelper.java
deleted file mode 100644
index 610b8d896d29f0c39398cef6495946c7be7c5aa7..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/ssl/SslCertificateHelper.java
+++ /dev/null
@@ -1,215 +0,0 @@
-package ch.ethz.sis.ssl;
-
-import java.io.File;
-import java.io.FileOutputStream;
-import java.io.IOException;
-import java.io.OutputStream;
-import java.net.URL;
-import java.security.KeyStore;
-import java.security.cert.Certificate;
-
-import javax.net.ssl.HostnameVerifier;
-import javax.net.ssl.HttpsURLConnection;
-import javax.net.ssl.SSLContext;
-import javax.net.ssl.SSLSession;
-import javax.net.ssl.SSLSocket;
-import javax.net.ssl.SSLSocketFactory;
-import javax.net.ssl.TrustManager;
-import javax.net.ssl.X509TrustManager;
-
-import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel;
-
-/**
- * Helper class for retrieving and locally storing SSL certificates from a server.
- *
- * @author Chandrasekhar Ramakrishnan
- */
-public class SslCertificateHelper
-{
- private final String serviceURL;
-
- private final File keystoreFile;
-
- private final String certificateEntryName;
-
- /**
- * Create a helper that retrieves a certificate from the serviceURL, and stores it in a keystore file with the name "keystore" in the
- * configDirectory.
- *
- * @param serviceURL The URL to retrieve the certificate from.
- * @param keystoreFile The file where to store the certificate in.
- * @param certificateEntryName The name in the keystore the certificate is stored under.
- */
- public SslCertificateHelper(String serviceURL, File keystoreFile, String certificateEntryName)
- {
- this.serviceURL = serviceURL;
- this.keystoreFile = keystoreFile;
- this.certificateEntryName = certificateEntryName;
- }
-
- public void setUpKeyStore()
- {
- if (serviceURL.startsWith("https"))
- {
- Certificate[] certificates = getServerCertificate();
- KeyStore keyStore;
- try
- {
- keyStore = KeyStore.getInstance("JKS");
- keyStore.load(null, null);
- for (int i = 0; i < certificates.length; i++)
- {
- keyStore.setCertificateEntry(certificateEntryName + i, certificates[i]);
- }
- } catch (Exception ex)
- {
- throw CheckedExceptionTunnel.wrapIfNecessary(ex);
- }
- FileOutputStream fileOutputStream = null;
- try
- {
- fileOutputStream = new FileOutputStream(keystoreFile);
- keyStore.store(fileOutputStream, "changeit".toCharArray());
- fileOutputStream.close();
- System.setProperty("javax.net.ssl.trustStore", keystoreFile.getAbsolutePath());
- } catch (Exception ex)
- {
- throw CheckedExceptionTunnel.wrapIfNecessary(ex);
- } finally
- {
- closeQuietly(fileOutputStream);
- }
- }
- }
-
- private static void closeQuietly(OutputStream output)
- {
- try
- {
- if (output != null)
- {
- output.close();
- }
- } catch (IOException ioe)
- {
- // ignore
- }
- }
-
- private Certificate[] getServerCertificate()
- {
- workAroundABugInJava6();
-
- // Create a trust manager that does not validate certificate chains
- setUpAllAcceptingTrustManager();
- setUpAllAcceptingHostNameVerifier();
- SSLSocket socket = null;
- try
- {
- URL url = new URL(serviceURL);
- int port = url.getPort();
- if (port == -1)
- {
- port = 443; // standard port for https
- }
- String hostname = url.getHost();
- SSLSocketFactory factory = HttpsURLConnection.getDefaultSSLSocketFactory();
- socket = (SSLSocket) factory.createSocket(hostname, port);
- socket.startHandshake();
- return socket.getSession().getPeerCertificates();
- } catch (Exception e)
- {
- throw CheckedExceptionTunnel.wrapIfNecessary(e);
- } finally
- {
- if (socket != null)
- {
- try
- {
- socket.close();
- } catch (IOException ex)
- {
- // ignored
- }
- }
- }
- }
-
- private void setUpAllAcceptingTrustManager()
- {
- TrustManager[] trustAllCerts = new TrustManager[]
- { new X509TrustManager()
- {
- @Override
- public java.security.cert.X509Certificate[] getAcceptedIssuers()
- {
- return null;
- }
-
- @Override
- public void checkClientTrusted(java.security.cert.X509Certificate[] certs,
- String authType)
- {
- }
-
- @Override
- public void checkServerTrusted(java.security.cert.X509Certificate[] certs,
- String authType)
- {
- }
- } };
-
- // Install the all-trusting trust manager
- try
- {
- SSLContext sc = SSLContext.getInstance("SSL");
- sc.init(null, trustAllCerts, new java.security.SecureRandom());
- HttpsURLConnection.setDefaultSSLSocketFactory(sc.getSocketFactory());
- } catch (Exception e)
- {
- }
- }
-
- private void setUpAllAcceptingHostNameVerifier()
- {
- HostnameVerifier acceptAllHostNames = new HostnameVerifier()
- {
- @Override
- public boolean verify(String hostname, SSLSession session)
- {
- return true;
- }
- };
- HttpsURLConnection.setDefaultHostnameVerifier(acceptAllHostNames);
- }
-
- // WORKAROUND: see comment submitted on 31-JAN-2008 for
- // http://bugs.sun.com/bugdatabase/view_bug.do?bug_id=6514454
- private void workAroundABugInJava6()
- {
- try
- {
- SSLContext.getInstance("SSL").createSSLEngine();
- } catch (Exception ex)
- {
- // Ignore this one.
- }
- }
-
- public static void trustAnyCertificate(String url)
- {
- if (url.startsWith("https://"))
- {
- try
- {
- File tempKeyStore = File.createTempFile("cert", "keystore");
- tempKeyStore.deleteOnExit();
- SslCertificateHelper helper = new SslCertificateHelper(url, tempKeyStore, "cert");
- helper.setUpKeyStore();
- } catch (IOException ioex)
- {
- throw CheckedExceptionTunnel.wrapIfNecessary(ioex);
- }
- }
- }
-}
\ No newline at end of file
diff --git a/openbis_benchmark/src/main/java/ch/ethz/sis/startup/Main.java b/openbis_benchmark/src/main/java/ch/ethz/sis/startup/Main.java
deleted file mode 100644
index ea8796db60af683c7a2a0700a7e4ee26abf71a7e..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/java/ch/ethz/sis/startup/Main.java
+++ /dev/null
@@ -1,112 +0,0 @@
-package ch.ethz.sis.startup;
-
-import java.io.File;
-import java.io.FileInputStream;
-import java.util.ArrayList;
-import java.util.List;
-
-import ch.ethz.sis.benchmark.Benchmark;
-import ch.ethz.sis.benchmark.BenchmarkConfig;
-import ch.ethz.sis.json.jackson.JacksonObjectMapper;
-import ch.ethz.sis.logging.LogManager;
-import ch.ethz.sis.logging.Logger;
-import ch.ethz.sis.logging.log4j.Log4J2LogFactory;
-
-public class Main
-{
- static
- {
- // Configuring Logging
- LogManager.setLogFactory(new Log4J2LogFactory());
- }
-
- private static Logger logger = LogManager.getLogger(Main.class);
-
- public static void main(String[] args) throws Exception
- {
- logger.info("Current Workspace: " + (new File("").getAbsolutePath()));
- File configFile;
- if (args.length < 1)
- {
- configFile = new File("../openbis_benchmark/conf/config-dev.json");
- if(configFile.exists()) {
- logger.info("No arguments given, starting with development config file: " + (configFile.getAbsolutePath()));
- } else {
- configFile = new File("./config-default.json");
- if(configFile.exists()) {
- logger.info("No arguments given, starting with default config file: " + (configFile.getAbsolutePath()));
- }
- }
- } else
- {
- configFile = new File(args[0]);
- }
-
- BenchmarkConfig[] benchmarkConfigs = JacksonObjectMapper.getInstance().readValue(new FileInputStream(configFile), BenchmarkConfig[].class);
- logger.info("REPORT MAIN\ttotalRealTime\taggAVGOpTime\ttotalOpTime\tnumOps\tavgOpTime\tmaxOpTime\tminOpTime");
- for(BenchmarkConfig benchmarkConfig:benchmarkConfigs) { // For each benchmark
- logger.traceAccess(null, benchmarkConfig);
- long start = System.currentTimeMillis();
- List<BenchmarkThread> threadsToJoin = new ArrayList<>();
- for(int t = 0; t < benchmarkConfig.getThreads(); t++) {
- BenchmarkThread thread = new BenchmarkThread(benchmarkConfig) {
- public void run() {
- benchmark.start();
- }
- };
- threadsToJoin.add(thread);
- thread.start();
- }
-
- for(BenchmarkThread thread:threadsToJoin) {
- thread.join();
- }
- long end = System.currentTimeMillis();
- logger.traceExit(benchmarkConfig);
- logger.info("Benchmark took: " + (end-start) + " millis");
- logJointStats(start, end, threadsToJoin);
- }
- }
-
- private static abstract class BenchmarkThread extends Thread {
- protected Benchmark benchmark;
-
- public BenchmarkThread(BenchmarkConfig benchmarkConfig) {
- super();
- try {
- benchmark = (Benchmark) Class.forName(benchmarkConfig.getClassName()).newInstance();
- benchmark.setConfiguration(benchmarkConfig);
- } catch (Exception e) {
- e.printStackTrace();
- }
- }
-
- public Benchmark getBenchmark() {
- return benchmark;
- }
- }
-
- private static void logJointStats(long start, long end, List<BenchmarkThread> benchmarkThreads) {
- long maxOpTime = Long.MIN_VALUE;
- long minOpTime = Long.MAX_VALUE;
- long numOps = 0;
- long totalOpTime = 0;
-
- for(BenchmarkThread benchmarkThread:benchmarkThreads) {
- totalOpTime += benchmarkThread.getBenchmark().getTotalOpTime();
- numOps += benchmarkThread.getBenchmark().getNumOps();
- if(benchmarkThread.getBenchmark().getMinOpTime() < minOpTime) {
- minOpTime = benchmarkThread.getBenchmark().getMinOpTime();
- }
- if(benchmarkThread.getBenchmark().getMaxOpTime() > maxOpTime) {
- maxOpTime = benchmarkThread.getBenchmark().getMaxOpTime();
- }
- }
-
- if(numOps > 0) {
- logger.info("REPORT MAIN\t" + (end-start) + "\t" + ((end-start)/numOps) + "\t" + totalOpTime + "\t" + numOps + "\t" + (totalOpTime/numOps) + "\t" + maxOpTime + "\t" + minOpTime);
- } else {
- logger.info("REPORT MAIN\tNO-OP");
- }
- }
-}
diff --git a/openbis_benchmark/src/main/resources/ch/ethz/sis/benchmark/util/google-10000-english.txt b/openbis_benchmark/src/main/resources/ch/ethz/sis/benchmark/util/google-10000-english.txt
deleted file mode 100644
index 3164d7bf96a91257fc384c02d74e9b6b93cb08f6..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/resources/ch/ethz/sis/benchmark/util/google-10000-english.txt
+++ /dev/null
@@ -1,10000 +0,0 @@
-the
-of
-and
-to
-a
-in
-for
-is
-on
-that
-by
-this
-with
-i
-you
-it
-not
-or
-be
-are
-from
-at
-as
-your
-all
-have
-new
-more
-an
-was
-we
-will
-home
-can
-us
-about
-if
-page
-my
-has
-search
-free
-but
-our
-one
-other
-do
-no
-information
-time
-they
-site
-he
-up
-may
-what
-which
-their
-news
-out
-use
-any
-there
-see
-only
-so
-his
-when
-contact
-here
-business
-who
-web
-also
-now
-help
-get
-pm
-view
-online
-c
-e
-first
-am
-been
-would
-how
-were
-me
-s
-services
-some
-these
-click
-its
-like
-service
-x
-than
-find
-price
-date
-back
-top
-people
-had
-list
-name
-just
-over
-state
-year
-day
-into
-email
-two
-health
-n
-world
-re
-next
-used
-go
-b
-work
-last
-most
-products
-music
-buy
-data
-make
-them
-should
-product
-system
-post
-her
-city
-t
-add
-policy
-number
-such
-please
-available
-copyright
-support
-message
-after
-best
-software
-then
-jan
-good
-video
-well
-d
-where
-info
-rights
-public
-books
-high
-school
-through
-m
-each
-links
-she
-review
-years
-order
-very
-privacy
-book
-items
-company
-r
-read
-group
-sex
-need
-many
-user
-said
-de
-does
-set
-under
-general
-research
-university
-january
-mail
-full
-map
-reviews
-program
-life
-know
-games
-way
-days
-management
-p
-part
-could
-great
-united
-hotel
-real
-f
-item
-international
-center
-ebay
-must
-store
-travel
-comments
-made
-development
-report
-off
-member
-details
-line
-terms
-before
-hotels
-did
-send
-right
-type
-because
-local
-those
-using
-results
-office
-education
-national
-car
-design
-take
-posted
-internet
-address
-community
-within
-states
-area
-want
-phone
-dvd
-shipping
-reserved
-subject
-between
-forum
-family
-l
-long
-based
-w
-code
-show
-o
-even
-black
-check
-special
-prices
-website
-index
-being
-women
-much
-sign
-file
-link
-open
-today
-technology
-south
-case
-project
-same
-pages
-uk
-version
-section
-own
-found
-sports
-house
-related
-security
-both
-g
-county
-american
-photo
-game
-members
-power
-while
-care
-network
-down
-computer
-systems
-three
-total
-place
-end
-following
-download
-h
-him
-without
-per
-access
-think
-north
-resources
-current
-posts
-big
-media
-law
-control
-water
-history
-pictures
-size
-art
-personal
-since
-including
-guide
-shop
-directory
-board
-location
-change
-white
-text
-small
-rating
-rate
-government
-children
-during
-usa
-return
-students
-v
-shopping
-account
-times
-sites
-level
-digital
-profile
-previous
-form
-events
-love
-old
-john
-main
-call
-hours
-image
-department
-title
-description
-non
-k
-y
-insurance
-another
-why
-shall
-property
-class
-cd
-still
-money
-quality
-every
-listing
-content
-country
-private
-little
-visit
-save
-tools
-low
-reply
-customer
-december
-compare
-movies
-include
-college
-value
-article
-york
-man
-card
-jobs
-provide
-j
-food
-source
-author
-different
-press
-u
-learn
-sale
-around
-print
-course
-job
-canada
-process
-teen
-room
-stock
-training
-too
-credit
-point
-join
-science
-men
-categories
-advanced
-west
-sales
-look
-english
-left
-team
-estate
-box
-conditions
-select
-windows
-photos
-gay
-thread
-week
-category
-note
-live
-large
-gallery
-table
-register
-however
-june
-october
-november
-market
-library
-really
-action
-start
-series
-model
-features
-air
-industry
-plan
-human
-provided
-tv
-yes
-required
-second
-hot
-accessories
-cost
-movie
-forums
-march
-la
-september
-better
-say
-questions
-july
-yahoo
-going
-medical
-test
-friend
-come
-dec
-server
-pc
-study
-application
-cart
-staff
-articles
-san
-feedback
-again
-play
-looking
-issues
-april
-never
-users
-complete
-street
-topic
-comment
-financial
-things
-working
-against
-standard
-tax
-person
-below
-mobile
-less
-got
-blog
-party
-payment
-equipment
-login
-student
-let
-programs
-offers
-legal
-above
-recent
-park
-stores
-side
-act
-problem
-red
-give
-memory
-performance
-social
-q
-august
-quote
-language
-story
-sell
-options
-experience
-rates
-create
-key
-body
-young
-america
-important
-field
-few
-east
-paper
-single
-ii
-age
-activities
-club
-example
-girls
-additional
-password
-z
-latest
-something
-road
-gift
-question
-changes
-night
-ca
-hard
-texas
-oct
-pay
-four
-poker
-status
-browse
-issue
-range
-building
-seller
-court
-february
-always
-result
-audio
-light
-write
-war
-nov
-offer
-blue
-groups
-al
-easy
-given
-files
-event
-release
-analysis
-request
-fax
-china
-making
-picture
-needs
-possible
-might
-professional
-yet
-month
-major
-star
-areas
-future
-space
-committee
-hand
-sun
-cards
-problems
-london
-washington
-meeting
-rss
-become
-interest
-id
-child
-keep
-enter
-california
-porn
-share
-similar
-garden
-schools
-million
-added
-reference
-companies
-listed
-baby
-learning
-energy
-run
-delivery
-net
-popular
-term
-film
-stories
-put
-computers
-journal
-reports
-co
-try
-welcome
-central
-images
-president
-notice
-god
-original
-head
-radio
-until
-cell
-color
-self
-council
-away
-includes
-track
-australia
-discussion
-archive
-once
-others
-entertainment
-agreement
-format
-least
-society
-months
-log
-safety
-friends
-sure
-faq
-trade
-edition
-cars
-messages
-marketing
-tell
-further
-updated
-association
-able
-having
-provides
-david
-fun
-already
-green
-studies
-close
-common
-drive
-specific
-several
-gold
-feb
-living
-sep
-collection
-called
-short
-arts
-lot
-ask
-display
-limited
-powered
-solutions
-means
-director
-daily
-beach
-past
-natural
-whether
-due
-et
-electronics
-five
-upon
-period
-planning
-database
-says
-official
-weather
-mar
-land
-average
-done
-technical
-window
-france
-pro
-region
-island
-record
-direct
-microsoft
-conference
-environment
-records
-st
-district
-calendar
-costs
-style
-url
-front
-statement
-update
-parts
-aug
-ever
-downloads
-early
-miles
-sound
-resource
-present
-applications
-either
-ago
-document
-word
-works
-material
-bill
-apr
-written
-talk
-federal
-hosting
-rules
-final
-adult
-tickets
-thing
-centre
-requirements
-via
-cheap
-nude
-kids
-finance
-true
-minutes
-else
-mark
-third
-rock
-gifts
-europe
-reading
-topics
-bad
-individual
-tips
-plus
-auto
-cover
-usually
-edit
-together
-videos
-percent
-fast
-function
-fact
-unit
-getting
-global
-tech
-meet
-far
-economic
-en
-player
-projects
-lyrics
-often
-subscribe
-submit
-germany
-amount
-watch
-included
-feel
-though
-bank
-risk
-thanks
-everything
-deals
-various
-words
-linux
-jul
-production
-commercial
-james
-weight
-town
-heart
-advertising
-received
-choose
-treatment
-newsletter
-archives
-points
-knowledge
-magazine
-error
-camera
-jun
-girl
-currently
-construction
-toys
-registered
-clear
-golf
-receive
-domain
-methods
-chapter
-makes
-protection
-policies
-loan
-wide
-beauty
-manager
-india
-position
-taken
-sort
-listings
-models
-michael
-known
-half
-cases
-step
-engineering
-florida
-simple
-quick
-none
-wireless
-license
-paul
-friday
-lake
-whole
-annual
-published
-later
-basic
-sony
-shows
-corporate
-google
-church
-method
-purchase
-customers
-active
-response
-practice
-hardware
-figure
-materials
-fire
-holiday
-chat
-enough
-designed
-along
-among
-death
-writing
-speed
-html
-countries
-loss
-face
-brand
-discount
-higher
-effects
-created
-remember
-standards
-oil
-bit
-yellow
-political
-increase
-advertise
-kingdom
-base
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-environmental
-thought
-stuff
-french
-storage
-oh
-japan
-doing
-loans
-shoes
-entry
-stay
-nature
-orders
-availability
-africa
-summary
-turn
-mean
-growth
-notes
-agency
-king
-monday
-european
-activity
-copy
-although
-drug
-pics
-western
-income
-force
-cash
-employment
-overall
-bay
-river
-commission
-ad
-package
-contents
-seen
-players
-engine
-port
-album
-regional
-stop
-supplies
-started
-administration
-bar
-institute
-views
-plans
-double
-dog
-build
-screen
-exchange
-types
-soon
-sponsored
-lines
-electronic
-continue
-across
-benefits
-needed
-season
-apply
-someone
-held
-ny
-anything
-printer
-condition
-effective
-believe
-organization
-effect
-asked
-eur
-mind
-sunday
-selection
-casino
-pdf
-lost
-tour
-menu
-volume
-cross
-anyone
-mortgage
-hope
-silver
-corporation
-wish
-inside
-solution
-mature
-role
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-weeks
-addition
-came
-supply
-nothing
-certain
-usr
-executive
-running
-lower
-necessary
-union
-jewelry
-according
-dc
-clothing
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-particular
-fine
-names
-robert
-homepage
-hour
-gas
-skills
-six
-bush
-islands
-advice
-career
-military
-rental
-decision
-leave
-british
-teens
-pre
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-sat
-woman
-facilities
-zip
-bid
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-sellers
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-cable
-opportunities
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-tuesday
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-machine
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-length
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-score
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-returns
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-ms
-lead
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-starting
-registration
-fri
-thursday
-courses
-consumer
-hi
-airport
-foreign
-artist
-outside
-furniture
-levels
-channel
-letter
-mode
-phones
-ideas
-wednesday
-structure
-fund
-summer
-allow
-degree
-contract
-button
-releases
-wed
-homes
-super
-male
-matter
-custom
-virginia
-almost
-took
-located
-multiple
-asian
-distribution
-editor
-inn
-industrial
-cause
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-song
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-focus
-late
-fall
-featured
-idea
-rooms
-female
-responsible
-inc
-communications
-win
-associated
-thomas
-primary
-cancer
-numbers
-reason
-tool
-browser
-spring
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-schedule
-documents
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-purpose
-feature
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-police
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-ip
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-cameras
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-physical
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-hill
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-deal
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-ratings
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-population
-pa
-regular
-secure
-navigation
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-therefore
-ass
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-christian
-round
-paypal
-favorite
-understand
-option
-master
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-recently
-probably
-thu
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-built
-publications
-blood
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-worldwide
-improve
-connection
-publisher
-hall
-larger
-anti
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-parents
-nokia
-impact
-transfer
-introduction
-kitchen
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-wedding
-properties
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-overview
-ship
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-owners
-disease
-tx
-excellent
-paid
-italy
-perfect
-hair
-opportunity
-kit
-classic
-basis
-command
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-william
-express
-anal
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-distance
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-ensure
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-involved
-el
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-especially
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-pussy
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-budget
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-guides
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-maximum
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-selected
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-amazon
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-restaurants
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-lists
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-ways
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-rule
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-bring
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-considered
-told
-xml
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-programme
-joined
-input
-strategy
-feet
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-valid
-bin
-modern
-senior
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-sexy
-teaching
-door
-grand
-testing
-trial
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-units
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-cool
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-viking
-myrtle
-bored
-cleanup
-yarn
-knit
-conditional
-mug
-crossword
-bother
-budapest
-conceptual
-knitting
-attacked
-hl
-bhutan
-liechtenstein
-mating
-compute
-redhead
-arrives
-translator
-automobiles
-tractor
-allah
-continent
-ob
-unwrap
-fares
-longitude
-resist
-challenged
-telecharger
-hoped
-pike
-safer
-insertion
-instrumentation
-ids
-hugo
-wagner
-constraint
-groundwater
-touched
-strengthening
-cologne
-gzip
-wishing
-ranger
-smallest
-insulation
-newman
-marsh
-ricky
-ctrl
-scared
-theta
-infringement
-bent
-laos
-subjective
-monsters
-asylum
-lightbox
-robbie
-stake
-cocktail
-outlets
-swaziland
-varieties
-arbor
-mediawiki
-configurations
-poison
diff --git a/openbis_benchmark/src/main/resources/log4j2.xml b/openbis_benchmark/src/main/resources/log4j2.xml
deleted file mode 100644
index 23a16f0c6ff50129eda492edfa062f4117044151..0000000000000000000000000000000000000000
--- a/openbis_benchmark/src/main/resources/log4j2.xml
+++ /dev/null
@@ -1,17 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<Configuration status="INFO">
- <Appenders>
- <Console name="Console" target="SYSTEM_OUT">
- <PatternLayout pattern="%msg%n" />
- </Console>
- <File name="MyFile" fileName="system.log" immediateFlush="false" append="false">
- <PatternLayout pattern="%msg%n"/>
- </File>
- </Appenders>
- <Loggers>
- <Root level="debug">
- <AppenderRef ref="Console" />
- <AppenderRef ref="MyFile"/>
- </Root>
- </Loggers>
-</Configuration>
\ No newline at end of file