diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java index c52c9f02d36ef1d1d5f1478a9d95cc425dd72d22..a500dee321d77ff1df224371a278ea345e48520a 100644 --- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java +++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/dss/FlowLaneFeeder.java @@ -153,11 +153,11 @@ class FlowLaneFeeder extends AbstractPostRegistrationDataSetHandlerForFileBasedU String flowcellID = originalData.getName(); List<File> files = new ArrayList<File>(); FileUtilities.findFiles(originalData, files, createSrfFileFilter()); - // if (files.size() < flowLaneSampleMap.size()) - // { - // throw new EnvironmentFailureException("Only " + files.size() - // + " flow lane files found instead of " + flowLaneSampleMap.size() + "."); - // } + if (files.size() < flowLaneSampleMap.size()) + { + throw new EnvironmentFailureException("Only " + files.size() + + " flow lane files found instead of " + flowLaneSampleMap.size() + "."); + } Set<String> processedFlowLanes = new LinkedHashSet<String>(); for (File file : files) {