diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractTabularDataGraphServlet.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java similarity index 95% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java index df7ed6ce97e2c3288d1282b4aa8e168bfe8af24a..ef67dc98f602de06c3bace97bb8d2596e8b4248d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/FileTabularDataGraphServlet.java @@ -21,7 +21,7 @@ import java.io.IOException; import ch.systemsx.cisd.common.exceptions.UserFailureException; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.ITabularData; -import ch.systemsx.cisd.utils.CsvFileReaderHelper; +import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper; /** * @author Chandrasekhar Ramakrishnan diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraph.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraph.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraph.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/AbstractTabularDataGraph.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/HeatmapDataset.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/HeatmapDataset.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/HeatmapDataset.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/HeatmapDataset.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/ITabularDataGraph.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/ITabularDataGraph.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/ITabularDataGraph.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/ITabularDataGraph.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/SpreadsheetColumnTickUnit.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/SpreadsheetColumnTickUnit.java similarity index 92% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/SpreadsheetColumnTickUnit.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/SpreadsheetColumnTickUnit.java index b5c0e8682de754ad14a54e7e765185c426e0277d..2e36820d5da762c3bcb4bb65602fd41437dd00c1 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/SpreadsheetColumnTickUnit.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/SpreadsheetColumnTickUnit.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.graph; import org.jfree.chart.axis.NumberTickUnit; -import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.PlateUtils; +import ch.systemsx.cisd.common.geometry.ConversionUtils; /** * @author Chandrasekhar Ramakrishnan @@ -62,6 +62,6 @@ public class SpreadsheetColumnTickUnit extends NumberTickUnit { return ""; } - return PlateUtils.translateRowNumberIntoLetterCode((int) value); + return ConversionUtils.translateRowNumberIntoLetterCode((int) value); } } diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java similarity index 97% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java index 572eb11bb7e92f0a21584dcc5031ca2152abdedd..9e6ba0f63d3809da4cbfd61ef686cf45362e88da 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphCollectionConfiguration.java @@ -30,12 +30,11 @@ import ch.systemsx.cisd.common.exceptions.EnvironmentFailureException; import ch.systemsx.cisd.common.utilities.PropertyParametersUtil; import ch.systemsx.cisd.common.utilities.PropertyParametersUtil.SectionProperties; import ch.systemsx.cisd.common.utilities.PropertyUtils; -import ch.systemsx.cisd.openbis.dss.generic.server.TabularDataGraphServlet; import ch.systemsx.cisd.openbis.dss.generic.server.graph.TabularDataGraphConfiguration.GraphType; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.ITabularData; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CodeAndLabelUtil; +import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CodeAndLabel; -import ch.systemsx.cisd.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration; /** * @author Chandrasekhar Ramakrishnan @@ -183,10 +182,10 @@ public class TabularDataGraphCollectionConfiguration implements ICsvFileReaderCo // specified. CodeAndLabel xAxis = getCodeAndLabelWithDefault(props, X_AXIS_KEY, - TabularDataGraphServlet.WELL_ROW_COLUMN); + "Row"); CodeAndLabel yAxis = getCodeAndLabelWithDefault(props, Y_AXIS_KEY, - TabularDataGraphServlet.WELL_COLUMN_COLUMN); + "Column"); CodeAndLabel zAxis = getCodeAndLabel(props, COLUMN_KEY); if (xAxis.equals(yAxis)) { diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphConfiguration.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphConfiguration.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataGraphConfiguration.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmap.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmap.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmap.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmap.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmapConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmapConfiguration.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmapConfiguration.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHeatmapConfiguration.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogram.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogram.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogram.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogram.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogramConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogramConfiguration.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogramConfiguration.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataHistogramConfiguration.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplot.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplot.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplot.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplot.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplotConfiguration.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplotConfiguration.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplotConfiguration.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataScatterplotConfiguration.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnit.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnit.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnit.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnit.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnitSource.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnitSource.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnitSource.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/graph/TabularDataTickUnitSource.java diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java similarity index 100% rename from screening/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/FileBasedImageAnalysisGraphReportingPlugin.java diff --git a/screening/source/java/ch/systemsx/cisd/utils/CsvFileReaderHelper.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java similarity index 98% rename from screening/source/java/ch/systemsx/cisd/utils/CsvFileReaderHelper.java rename to datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java index 2a752f299c1742b98148b87f8aacf41d4a2d615f..22f3454155aae6429c3a9d1791abafc728a84ea9 100644 --- a/screening/source/java/ch/systemsx/cisd/utils/CsvFileReaderHelper.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/CsvFileReaderHelper.java @@ -14,7 +14,7 @@ * limitations under the License. */ -package ch.systemsx.cisd.utils; +package ch.systemsx.cisd.openbis.dss.generic.shared.utils; import java.io.File; import java.io.FileInputStream; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorMigrator.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorMigrator.java index 94b201d5affee94001fc368241c32e172234c36a..daa7fa233ab90696109c72ea78c9bd492e6e5092 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorMigrator.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorMigrator.java @@ -28,8 +28,8 @@ import ch.systemsx.cisd.openbis.dss.etl.HCSContainerDatasetInfo; import ch.systemsx.cisd.openbis.dss.etl.dataaccess.IImagingQueryDAO; import ch.systemsx.cisd.openbis.dss.etl.featurevector.CsvFeatureVectorParser.CsvFeatureVectorParserConfiguration; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.DatasetFileLines; +import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper; import ch.systemsx.cisd.openbis.generic.shared.dto.SimpleDataSetInformationDTO; -import ch.systemsx.cisd.utils.CsvFileReaderHelper; /** * @author Chandrasekhar Ramakrishnan diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java index 446112863690fb5ed5dbbf174969219e1788a7a3..976e31e6473da892fcc8564cc0f6545823370656 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/CsvFeatureVectorParser.java @@ -29,10 +29,10 @@ import ch.systemsx.cisd.common.utilities.Counters; import ch.systemsx.cisd.openbis.dss.etl.dto.api.impl.FeatureDefinition; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.DatasetFileLines; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CodeAndLabelUtil; +import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CodeAndLabel; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation; import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.ImgFeatureDefDTO; -import ch.systemsx.cisd.utils.CsvFileReaderHelper; /** * Converts feature vectors from CSV files to {@link FeatureDefinition} objects. diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessorConfiguration.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessorConfiguration.java index 19e5942378ef698975f6d72d8c740285a3d99c37..e1a2ed592a0c4f8e74ac3917f9f7042bf7b183c7 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessorConfiguration.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureVectorStorageProcessorConfiguration.java @@ -23,7 +23,7 @@ import java.util.Set; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.utilities.PropertyUtils; -import ch.systemsx.cisd.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration; +import ch.systemsx.cisd.openbis.dss.generic.shared.utils.CsvFileReaderHelper.ICsvFileReaderConfiguration; class FeatureVectorStorageProcessorConfiguration implements ICsvFileReaderConfiguration