From 1ee259a082dfadc205e6dfaf49dea97e1dbac2ca Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Fri, 29 Aug 2014 13:22:58 +0000
Subject: [PATCH] - bug fix for pool samples which have NOINDEX set as an index
SVN: 32389
---
deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py | 2 +-
1 file changed, 1 insertion(+), 1 deletion(-)
diff --git a/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py b/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
index 558b4a74816..b8045213b59 100644
--- a/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
+++ b/deep_sequencing_unit/source/Jython/createSampleSheet_nextseq.py
@@ -491,7 +491,7 @@ def createMiSeqSampleSheet(parentDict, flowCellDict, configMap, index1Vocabulary
for key in parentDict.keys():
lane = parentDict[key]['LANE'][-1:]
# If no index then just skip this sample
- if configMap['index1Name'] not in parentDict[key]:
+ if (configMap['index1Name'] not in parentDict[key]) or (parentDict[key][configMap['index1Name']] == 'NOINDEX'):
continue
index1 = parentDict[key][configMap['index1Name']]
--
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