From 1ea71b0a80f5f575ed8b49b61f6081b4bd7bf52c Mon Sep 17 00:00:00 2001
From: kohleman <kohleman>
Date: Mon, 30 Jul 2012 11:46:31 +0000
Subject: [PATCH] added openBIS connection (OpenbisServiceFacadeFactory)
SVN: 26282
---
deep_sequencing_unit/source/Jython/create_QGF_Invoices.py | 6 +++++-
1 file changed, 5 insertions(+), 1 deletion(-)
diff --git a/deep_sequencing_unit/source/Jython/create_QGF_Invoices.py b/deep_sequencing_unit/source/Jython/create_QGF_Invoices.py
index 37f45710803..804dcceef72 100644
--- a/deep_sequencing_unit/source/Jython/create_QGF_Invoices.py
+++ b/deep_sequencing_unit/source/Jython/create_QGF_Invoices.py
@@ -177,7 +177,9 @@ def getVocabulary(vocabularyCode):
def getNonbilledSamples (sampleType):
- '''Getting all RAW samples where no Invoice was sent '''
+ '''Getting all samples where no Invoice was sent
+ @param param: Sample Type which we are looking for
+ '''
sc = SearchCriteria();
sc.addMatchClause(SearchCriteria.MatchClause.createAttributeMatch(SearchCriteria.MatchClauseAttribute.TYPE, sampleType));
@@ -380,6 +382,8 @@ Main script
# for now setting the format by hand
format = "xlsx"
+service = OpenbisServiceFacadeFactory.tryCreate("openBISUsername", "password", "https://my-openbis.bsse.ethz.ch:8443", 5000)
+
foundSamples = getNonbilledSamples("ILLUMINA_SEQUENCING")
groupByPiDict = groupByPi(foundSamples)
--
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