From 1e10e84198d36f7ec63418f35e7f449160a9c848 Mon Sep 17 00:00:00 2001 From: buczekp <buczekp> Date: Fri, 10 Dec 2010 12:19:49 +0000 Subject: [PATCH] [LMS-1921] migration - connect wells with plate experiments SVN: 19078 --- .../dataaccess/db/DatabaseVersionHolder.java | 2 +- openbis/source/sql/generic/063/data-063.sql | 357 +++++++++++++ openbis/source/sql/generic/063/schema-063.sql | 478 ++++++++++++++++++ .../source/sql/postgresql/063/domains-063.sql | 27 + .../sql/postgresql/063/function-063.sql | 274 ++++++++++ .../source/sql/postgresql/063/grants-063.sql | 83 +++ .../migration/migration-062-063.sql | 13 + 7 files changed, 1233 insertions(+), 1 deletion(-) create mode 100644 openbis/source/sql/generic/063/data-063.sql create mode 100644 openbis/source/sql/generic/063/schema-063.sql create mode 100644 openbis/source/sql/postgresql/063/domains-063.sql create mode 100644 openbis/source/sql/postgresql/063/function-063.sql create mode 100644 openbis/source/sql/postgresql/063/grants-063.sql create mode 100644 openbis/source/sql/postgresql/migration/migration-062-063.sql diff --git a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseVersionHolder.java b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseVersionHolder.java index 3236dd1e0a4..4ffd82cb28a 100644 --- a/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseVersionHolder.java +++ b/openbis/source/java/ch/systemsx/cisd/openbis/generic/server/dataaccess/db/DatabaseVersionHolder.java @@ -24,7 +24,7 @@ package ch.systemsx.cisd.openbis.generic.server.dataaccess.db; public final class DatabaseVersionHolder { /** Current version of the database. */ - private static final String DATABASE_VERSION = "062";// S95 + private static final String DATABASE_VERSION = "063";// S96 private DatabaseVersionHolder() { diff --git a/openbis/source/sql/generic/063/data-063.sql b/openbis/source/sql/generic/063/data-063.sql new file mode 100644 index 00000000000..282cfa39162 --- /dev/null +++ b/openbis/source/sql/generic/063/data-063.sql @@ -0,0 +1,357 @@ +---------------------------------------------------------------------------- +-- Purpose: Insert an initial data set into the table DATABASE_INSTANCES +---------------------------------------------------------------------------- + +INSERT INTO database_instances( + id + , code + , uuid + , is_original_source) + VALUES ( nextval('DATABASE_INSTANCE_ID_SEQ') + , 'SYSTEM_DEFAULT' + , 'SYSTEM_DEFAULT' + , 'T'); + +---------------------------------------------------------------------- +-- Purpose: Insert an initial data set into the table PERSONS +----------------------------------------------------------------------- + +insert into persons +(id +,first_name +,last_name +,user_id +,email +,dbin_id) +values +(nextval('PERSON_ID_SEQ') +,'' +,'System User' +,'system' +,'' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') ); + +----------------------------------------------------------------------------------- +-- Purpose: Create Controlled Vocabulary STORAGE_FORMAT +----------------------------------------------------------------------------------- +insert into controlled_vocabularies + ( id + , code + , is_internal_namespace + , description + , pers_id_registerer + , is_managed_internally + , dbin_id) +values (nextval('CONTROLLED_VOCABULARY_ID_SEQ') + , 'STORAGE_FORMAT' + , true + , 'The on-disk storage format of a data set' + , (select id from persons where user_id ='system') + , true + , (select id from database_instances where code = 'SYSTEM_DEFAULT')); + + +----------------------------------------------------------------------------------- +-- Purpose: Create Controlled Vocabulary Terms for STORAGE_FORMAT +----------------------------------------------------------------------------------- +insert into controlled_vocabulary_terms + ( id + , code + , covo_id + , pers_id_registerer + , ordinal ) +values (nextval('CVTE_ID_SEQ') + , 'PROPRIETARY' + , (select id from controlled_vocabularies where code = 'STORAGE_FORMAT' and is_internal_namespace = true) + , (select id from persons where user_id ='system') + , 1); + +insert into controlled_vocabulary_terms + ( id + , code + , covo_id + , pers_id_registerer + , ordinal) +values (nextval('CVTE_ID_SEQ') + , 'BDS_DIRECTORY' + , (select id from controlled_vocabularies where code = 'STORAGE_FORMAT' and is_internal_namespace = true) + , (select id from persons where user_id ='system') + , 2); + +------------------------------------------------------------------ +-- Purpose: Insert an initial data set into the table DATA_TYPES +------------------------------------------------------------------ + +insert into data_types +(id +,code +,description) +values +(nextval('DATA_TYPE_ID_SEQ') +,'VARCHAR' +,'Short text' +); + +insert into data_types +(id + ,code + ,description) + values + (nextval('DATA_TYPE_ID_SEQ') + ,'MULTILINE_VARCHAR' + ,'Long text' +); + +insert into data_types +(id +,code +,description) +values +(nextval('DATA_TYPE_ID_SEQ') +,'INTEGER' +,'Integer number' +); + +insert into data_types +(id +,code +,description) +values +(nextval('DATA_TYPE_ID_SEQ') +,'REAL' +,'Real number, i.e. an inexact, variable-precision numeric type' +); + +insert into data_types +(id +,code +,description) +values +(nextval('DATA_TYPE_ID_SEQ') +,'BOOLEAN' +,'True or False' +); + +insert into data_types +(id +,code +,description) +values +(nextval('DATA_TYPE_ID_SEQ') +,'TIMESTAMP' +,'Both date and time. Format: yyyy-mm-dd hh:mm:ss' +); + +insert into data_types +(id + ,code + ,description) + values + (nextval('DATA_TYPE_ID_SEQ') + ,'CONTROLLEDVOCABULARY' + ,'Controlled Vocabulary' +); + +insert into data_types +(id + ,code + ,description) + values + (nextval('DATA_TYPE_ID_SEQ') + ,'MATERIAL' + ,'Reference to a material' +); + +insert into data_types +(id + ,code + ,description) + values + (nextval('DATA_TYPE_ID_SEQ') + ,'HYPERLINK' + ,'Address of a web page' +); + +---------------------------------------------------------------------- +-- Purpose: Insert an initial data set into the table PROPERTY_TYPES +----------------------------------------------------------------------- + +insert into property_types +(id +,code +,description +,label +,daty_id +,pers_id_registerer +,dbin_id) +values +(nextval('PROPERTY_TYPE_ID_SEQ') +,'DESCRIPTION' +,'A Description' +,'Description' +,(select id from data_types where code ='VARCHAR') +,(select id from persons where user_id ='system') +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +-------------------------------------------------------------------------- +-- Purpose: Insert an initial data set into the table DATA_SET_TYPES +-------------------------------------------------------------------------- + +insert into data_set_types +(id +,code +,description +,dbin_id) +values +(nextval('DATA_SET_TYPE_ID_SEQ') +,'UNKNOWN' +,'Unknown' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +------------------------------------------------------------------------- +-- Purpose: Insert an initial data set into the table FILE_FORMAT_TYPES +------------------------------------------------------------------------- + +insert into file_format_types +(id +,code +,description +,dbin_id) +values +(nextval('FILE_FORMAT_TYPE_ID_SEQ') +,'HDF5' +,'Hierarchical Data Format File, version 5' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +insert into file_format_types +(id +,code +,description +,dbin_id) +values +(nextval('FILE_FORMAT_TYPE_ID_SEQ') +,'PROPRIETARY' +,'Proprietary Format File' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +insert into file_format_types +(id +,code +,description +,dbin_id) +values +(nextval('FILE_FORMAT_TYPE_ID_SEQ') +,'SRF' +,'Sequence Read Format File' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +insert into file_format_types +(id +,code +,description +,dbin_id) +values +(nextval('FILE_FORMAT_TYPE_ID_SEQ') +,'TIFF' +,'TIFF File' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +insert into file_format_types +(id +,code +,description +,dbin_id) +values +(nextval('FILE_FORMAT_TYPE_ID_SEQ') +,'TSV' +,'Tab Separated Values File' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +insert into file_format_types +(id +,code +,description +,dbin_id) +values +(nextval('FILE_FORMAT_TYPE_ID_SEQ') +,'XML' +,'XML File' +,(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +--------------------------------------------------------------------- +-- Purpose: Insert an initial data set into the table LOCATOR_TYPES +--------------------------------------------------------------------- + +insert into locator_types +(id +,code +,description) +values +(nextval('LOCATOR_TYPE_ID_SEQ') +,'RELATIVE_LOCATION' +,'Relative Location' +); + +--------------------------------------------------------------------- +-- Purpose: Insert an initial data into table RELATIONSHIP_TYPES +--------------------------------------------------------------------- + +insert into relationship_types +(id, +code, +label, +parent_label, +child_label, +description, +pers_id_registerer, +is_managed_internally, +is_internal_namespace, +dbin_id) +values +( +nextval('RELATIONSHIP_TYPE_ID_SEQ'), +'PARENT_CHILD', +'Parent - Child', +'Parent', +'Child', +'Parent - Child relationship', +(select id from persons where user_id ='system'), +'T', +'T', +(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + +insert into relationship_types +(id, +code, +label, +parent_label, +child_label, +description, +pers_id_registerer, +is_managed_internally, +is_internal_namespace, +dbin_id) +values +( +nextval('RELATIONSHIP_TYPE_ID_SEQ'), +'PLATE_CONTROL_LAYOUT', +'Plate - Control Layout', +'Plate', +'Control Layout', +'Plate - Control Layout relationship', +(select id from persons where user_id ='system'), +'T', +'T', +(select id from database_instances where code = 'SYSTEM_DEFAULT') +); + + diff --git a/openbis/source/sql/generic/063/schema-063.sql b/openbis/source/sql/generic/063/schema-063.sql new file mode 100644 index 00000000000..36c0d3e0d56 --- /dev/null +++ b/openbis/source/sql/generic/063/schema-063.sql @@ -0,0 +1,478 @@ +-- D:\DDL\postgresql\schema-023.sql +-- +-- Generated for ANSI SQL92 on Fri Jul 04 15:13:22 2008 by Server Generator 10.1.2.6.18 +------------------------------------------------------------------------------------ +-- +-- Post-Generation Modifications: +-- +-- 1. Changed domain FILE from BIT(32000) to BYTEA +-- 2. Changed domain TECH_ID from NUMERIC(20) to BIGINT +-- 3. Changed domain BOOLEAN_CHAR from CHAR(1) DEFAULT F to BOOLEAN DEFAULT FALSE +-- 4. Removed the check constraints to handle boolean values in Oracle for the +-- tables MATERIAL_TYPE_PROPERTY_TYPES, EXPERIMENT_TYPE_PROPERTY_TYPES and +-- SAMPLE_TYPE_PROPERTY_TYPES (AVCON_%) +-- 5. Added the ON DELETE CASCADE qualifier to the foreign keys MAPR_MTPT_FK, +-- EXPR_ETPT_FK and SAPR_STPT_FK +-- 6. Add the check constraint directly on the domain BOOLEAN_CHAR_OR_UNKNOWN +-- CREATE DOMAIN BOOLEAN_CHAR_OR_UNKNOWN AS CHAR(1) CHECK (VALUE in ('F', 'T', 'U')) DEFAULT 'U'; +-- 7. Add the WITH TIMEZONE qualifier to the domain TIME_STAMP +-- CREATE DOMAIN TIME_STAMP AS TIMESTAMP WITH TIME ZONE; +-- 8. Add the WITH TIMEZONE and NOT NULL qualifiers to the domain TIME_STAMP_DFL +-- CREATE DOMAIN TIME_STAMP_DFL AS TIMESTAMP WITH TIME ZONE NOT NULL DEFAULT CURRENT_TIMESTAMP; +-- 9. Extend the domain EVENT_TYPE by adding the CHECK constraint +-- CREATE DOMAIN EVENT_TYPE AS VARCHAR(40) CHECK (VALUE in ('DELETION', 'INVALIDATION', 'MOVEMENT')); +-- 10. Extend the domain AUTHORIZATION_ROLE by adding the CHECK constraint +-- CREATE DOMAIN AUTHORIZATION_ROLE as VARCHAR(40) CHECK (VALUE IN ('ADMIN', 'POWER_USER', 'USER', 'OBSERVER', 'ETL_SERVER')); +-- 11. Added the Sequence and Index sections +-- 12. Added DATABASE_INSTANCES.GLOBAL_CODE column for UUID +-- 13. DATABASE_INSTANCES.GLOBAL_CODE renamed to DATABASE_INSTANCES.UUID +-- 14. OBSERVABLE_TYPES renamed to DATA_SET_TYPES +-- 15. OBSERVABLE_TYPE_ID_SEQ renamed to DATA_SET_TYPE_ID_SEQ +-- 16. DATA.OBTY_ID renamed to DATA.DSTY_ID; +-- 17. some others - the source model should be updated to make these Post-Generation Modifications minimal +------------------------------------------------------------------------------------ + +-- Creating tables + +CREATE TABLE CONTROLLED_VOCABULARIES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID NOT NULL,IS_MANAGED_INTERNALLY BOOLEAN_CHAR NOT NULL DEFAULT 'F',IS_INTERNAL_NAMESPACE BOOLEAN_CHAR NOT NULL DEFAULT 'F',DBIN_ID TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, IS_CHOSEN_FROM_LIST BOOLEAN_CHAR NOT NULL DEFAULT TRUE, SOURCE_URI CHARACTER VARYING(250)); +CREATE TABLE CONTROLLED_VOCABULARY_TERMS (ID TECH_ID NOT NULL,CODE OBJECT_NAME NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,COVO_ID TECH_ID NOT NULL,PERS_ID_REGISTERER TECH_ID NOT NULL,LABEL COLUMN_LABEL, DESCRIPTION DESCRIPTION_2000, ORDINAL ORDINAL_INT NOT NULL); +CREATE TABLE DATA (ID TECH_ID NOT NULL,CODE CODE,DSTY_ID TECH_ID NOT NULL,DAST_ID TECH_ID NOT NULL,EXPE_ID TECH_ID NOT NULL,DATA_PRODUCER_CODE CODE,PRODUCTION_TIMESTAMP TIME_STAMP,SAMP_ID TECH_ID,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID,IS_PLACEHOLDER BOOLEAN_CHAR DEFAULT 'F',IS_VALID BOOLEAN_CHAR DEFAULT 'T', MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, IS_DERIVED BOOLEAN_CHAR NOT NULL); +CREATE TABLE DATABASE_INSTANCES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,UUID CODE NOT NULL,IS_ORIGINAL_SOURCE BOOLEAN_CHAR NOT NULL DEFAULT 'F',REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE DATA_SET_RELATIONSHIPS (DATA_ID_PARENT TECH_ID NOT NULL,DATA_ID_CHILD TECH_ID NOT NULL); +CREATE TABLE DATA_STORES (ID TECH_ID NOT NULL,DBIN_ID TECH_ID NOT NULL,CODE CODE NOT NULL,DOWNLOAD_URL VARCHAR(1024) NOT NULL,REMOTE_URL VARCHAR(250) NOT NULL,SESSION_TOKEN VARCHAR(50) NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, IS_ARCHIVER_CONFIGURED BOOLEAN_CHAR NOT NULL DEFAULT 'F'); +CREATE TABLE DATA_STORE_SERVICES (ID TECH_ID NOT NULL, KEY VARCHAR(256) NOT NULL, LABEL VARCHAR(256) NOT NULL, KIND DATA_STORE_SERVICE_KIND NOT NULL, DATA_STORE_ID TECH_ID NOT NULL, REPORTING_PLUGIN_TYPE DATA_STORE_SERVICE_REPORTING_PLUGIN_TYPE); +CREATE TABLE DATA_STORE_SERVICE_DATA_SET_TYPES (DATA_STORE_SERVICE_ID TECH_ID NOT NULL, DATA_SET_TYPE_ID TECH_ID NOT NULL); +CREATE TABLE DATA_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000 NOT NULL); +CREATE TABLE EVENTS (ID TECH_ID NOT NULL,EVENT_TYPE EVENT_TYPE NOT NULL,DESCRIPTION DESCRIPTION_2000,REASON DESCRIPTION_2000,PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, entity_type VARCHAR(80) NOT NULL, identifier VARCHAR(250) NOT NULL); +CREATE TABLE EXPERIMENTS (ID TECH_ID NOT NULL,PERM_ID CODE NOT NULL,CODE CODE NOT NULL,EXTY_ID TECH_ID NOT NULL,MATE_ID_STUDY_OBJECT TECH_ID,PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, PROJ_ID TECH_ID NOT NULL,INVA_ID TECH_ID,IS_PUBLIC BOOLEAN_CHAR NOT NULL DEFAULT 'F'); +CREATE TABLE ATTACHMENTS (ID TECH_ID NOT NULL,EXPE_ID TECH_ID,SAMP_ID TECH_ID,PROJ_ID TECH_ID,EXAC_ID TECH_ID NOT NULL,FILE_NAME FILE_NAME NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,VERSION INTEGER NOT NULL,PERS_ID_REGISTERER TECH_ID NOT NULL, title TITLE_100, description DESCRIPTION_2000); +CREATE TABLE ATTACHMENT_CONTENTS (ID TECH_ID NOT NULL,VALUE FILE NOT NULL); +CREATE TABLE EXPERIMENT_PROPERTIES (ID TECH_ID NOT NULL,EXPE_ID TECH_ID NOT NULL,ETPT_ID TECH_ID NOT NULL,VALUE TEXT_VALUE,CVTE_ID TECH_ID, MATE_PROP_ID TECH_ID, PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE EXPERIMENT_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000,DBIN_ID TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE EXPERIMENT_TYPE_PROPERTY_TYPES (ID TECH_ID NOT NULL,EXTY_ID TECH_ID NOT NULL,PRTY_ID TECH_ID NOT NULL,IS_MANDATORY BOOLEAN_CHAR NOT NULL DEFAULT 'F',IS_MANAGED_INTERNALLY BOOLEAN_CHAR NOT NULL DEFAULT 'F',PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, ORDINAL ORDINAL_INT NOT NULL, SECTION DESCRIPTION_2000,IS_DYNAMIC BOOLEAN NOT NULL DEFAULT FALSE,SCRIPT_ID TECH_ID); +CREATE TABLE EXTERNAL_DATA (DATA_ID TECH_ID NOT NULL,LOCATION VARCHAR(1024) NOT NULL,FFTY_ID TECH_ID NOT NULL,LOTY_ID TECH_ID NOT NULL,CVTE_ID_STOR_FMT TECH_ID NOT NULL,IS_COMPLETE BOOLEAN_CHAR_OR_UNKNOWN NOT NULL DEFAULT 'U',CVTE_ID_STORE TECH_ID, STATUS ARCHIVING_STATUS NOT NULL DEFAULT 'AVAILABLE'); +CREATE TABLE FILE_FORMAT_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000,DBIN_ID TECH_ID NOT NULL); +CREATE TABLE GRID_CUSTOM_COLUMNS (ID TECH_ID NOT NULL, DBIN_ID TECH_ID NOT NULL, CODE VARCHAR(200) NOT NULL, LABEL column_label NOT NULL, DESCRIPTION DESCRIPTION_2000,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, PERS_ID_REGISTERER TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, EXPRESSION GRID_EXPRESSION NOT NULL, IS_PUBLIC BOOLEAN NOT NULL, GRID_ID GRID_ID NOT NULL); +CREATE TABLE SPACES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DBIN_ID TECH_ID NOT NULL,DESCRIPTION DESCRIPTION_2000,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID NOT NULL); +CREATE TABLE INVALIDATIONS (ID TECH_ID NOT NULL,PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,REASON DESCRIPTION_2000); +CREATE TABLE LOCATOR_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000); +CREATE TABLE MATERIALS (ID TECH_ID NOT NULL,CODE CODE NOT NULL,MATY_ID TECH_ID NOT NULL,PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, DBIN_ID TECH_ID NOT NULL); +CREATE TABLE MATERIAL_PROPERTIES (ID TECH_ID NOT NULL,MATE_ID TECH_ID NOT NULL,MTPT_ID TECH_ID NOT NULL,VALUE TEXT_VALUE,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, PERS_ID_REGISTERER TECH_ID NOT NULL,CVTE_ID TECH_ID, MATE_PROP_ID TECH_ID); +CREATE TABLE MATERIAL_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000,DBIN_ID TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE MATERIAL_TYPE_PROPERTY_TYPES (ID TECH_ID NOT NULL,MATY_ID TECH_ID NOT NULL,PRTY_ID TECH_ID NOT NULL,IS_MANDATORY BOOLEAN_CHAR NOT NULL DEFAULT 'F',IS_MANAGED_INTERNALLY BOOLEAN_CHAR NOT NULL DEFAULT 'F',REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID NOT NULL, ORDINAL ORDINAL_INT NOT NULL, SECTION DESCRIPTION_2000,IS_DYNAMIC BOOLEAN NOT NULL DEFAULT FALSE,SCRIPT_ID TECH_ID); +CREATE TABLE DATA_SET_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000,DBIN_ID TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, MAIN_DS_PATTERN VARCHAR(300), MAIN_DS_PATH VARCHAR(1000)); +CREATE TABLE PERSONS (ID TECH_ID NOT NULL,FIRST_NAME VARCHAR(30),LAST_NAME VARCHAR(30),USER_ID USER_ID NOT NULL,EMAIL OBJECT_NAME,DBIN_ID TECH_ID NOT NULL,SPACE_ID TECH_ID,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID, DISPLAY_SETTINGS FILE); +CREATE TABLE PROJECTS (ID TECH_ID NOT NULL,CODE CODE NOT NULL,SPACE_ID TECH_ID NOT NULL,PERS_ID_LEADER TECH_ID,DESCRIPTION DESCRIPTION_2000,PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE PROPERTY_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000 NOT NULL,LABEL COLUMN_LABEL NOT NULL,DATY_ID TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID NOT NULL,COVO_ID TECH_ID,IS_MANAGED_INTERNALLY BOOLEAN_CHAR NOT NULL DEFAULT 'F',IS_INTERNAL_NAMESPACE BOOLEAN_CHAR NOT NULL DEFAULT 'F',DBIN_ID TECH_ID NOT NULL, MATY_PROP_ID TECH_ID, SCHEMA TEXT_VALUE, TRANSFORMATION TEXT_VALUE); +CREATE TABLE ROLE_ASSIGNMENTS (ID TECH_ID NOT NULL,ROLE_CODE AUTHORIZATION_ROLE NOT NULL,SPACE_ID TECH_ID,DBIN_ID TECH_ID,PERS_ID_GRANTEE TECH_ID, AG_ID_GRANTEE TECH_ID, PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE SAMPLES (ID TECH_ID NOT NULL,PERM_ID CODE NOT NULL,CODE CODE NOT NULL,EXPE_ID TECH_ID,SATY_ID TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID NOT NULL,INVA_ID TECH_ID,DBIN_ID TECH_ID,SPACE_ID TECH_ID,SAMP_ID_PART_OF TECH_ID); +CREATE TABLE SAMPLE_PROPERTIES (ID TECH_ID NOT NULL,SAMP_ID TECH_ID NOT NULL,STPT_ID TECH_ID NOT NULL,VALUE TEXT_VALUE,CVTE_ID TECH_ID,MATE_PROP_ID TECH_ID,PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE SAMPLE_TYPES (ID TECH_ID NOT NULL,CODE CODE NOT NULL,DESCRIPTION DESCRIPTION_2000,DBIN_ID TECH_ID NOT NULL, IS_LISTABLE BOOLEAN_CHAR NOT NULL DEFAULT 'T', GENERATED_FROM_DEPTH INTEGER NOT NULL DEFAULT 0, PART_OF_DEPTH INTEGER NOT NULL DEFAULT 0, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, is_auto_generated_code BOOLEAN_CHAR NOT NULL DEFAULT 'F', generated_code_prefix CODE NOT NULL DEFAULT 'S', is_subcode_unique BOOLEAN_CHAR NOT NULL DEFAULT 'F'); +CREATE TABLE SAMPLE_TYPE_PROPERTY_TYPES (ID TECH_ID NOT NULL,SATY_ID TECH_ID NOT NULL,PRTY_ID TECH_ID NOT NULL,IS_MANDATORY BOOLEAN_CHAR NOT NULL DEFAULT 'F',IS_MANAGED_INTERNALLY BOOLEAN_CHAR NOT NULL DEFAULT 'F',PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, IS_DISPLAYED BOOLEAN_CHAR NOT NULL DEFAULT 'T', ORDINAL ORDINAL_INT NOT NULL, SECTION DESCRIPTION_2000,IS_DYNAMIC BOOLEAN NOT NULL DEFAULT FALSE,SCRIPT_ID TECH_ID); + +CREATE TABLE DATA_SET_PROPERTIES (ID TECH_ID NOT NULL,DS_ID TECH_ID NOT NULL,DSTPT_ID TECH_ID NOT NULL,VALUE TEXT_VALUE,CVTE_ID TECH_ID, MATE_PROP_ID TECH_ID, PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE DATA_SET_TYPE_PROPERTY_TYPES (ID TECH_ID NOT NULL,DSTY_ID TECH_ID NOT NULL,PRTY_ID TECH_ID NOT NULL,IS_MANDATORY BOOLEAN_CHAR NOT NULL DEFAULT 'F',IS_MANAGED_INTERNALLY BOOLEAN_CHAR NOT NULL DEFAULT 'F',PERS_ID_REGISTERER TECH_ID NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, ORDINAL ORDINAL_INT NOT NULL, SECTION DESCRIPTION_2000,IS_DYNAMIC BOOLEAN NOT NULL DEFAULT FALSE,SCRIPT_ID TECH_ID); + +CREATE TABLE AUTHORIZATION_GROUPS (ID TECH_ID NOT NULL, DBIN_ID TECH_ID NOT NULL, CODE CODE NOT NULL, DESCRIPTION DESCRIPTION_2000,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, PERS_ID_REGISTERER TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP); +CREATE TABLE AUTHORIZATION_GROUP_PERSONS (AG_ID TECH_ID NOT NULL, PERS_ID TECH_ID NOT NULL); + +CREATE TABLE FILTERS (ID TECH_ID NOT NULL, DBIN_ID TECH_ID NOT NULL, NAME VARCHAR(200) NOT NULL, DESCRIPTION DESCRIPTION_2000,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, PERS_ID_REGISTERER TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, EXPRESSION VARCHAR(2000) NOT NULL, IS_PUBLIC BOOLEAN NOT NULL, GRID_ID VARCHAR(200) NOT NULL); +CREATE TABLE QUERIES (ID TECH_ID NOT NULL, DBIN_ID TECH_ID NOT NULL, NAME VARCHAR(200) NOT NULL, DESCRIPTION DESCRIPTION_2000,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, PERS_ID_REGISTERER TECH_ID NOT NULL, MODIFICATION_TIMESTAMP TIME_STAMP DEFAULT CURRENT_TIMESTAMP, EXPRESSION VARCHAR(2000) NOT NULL, IS_PUBLIC BOOLEAN NOT NULL, QUERY_TYPE QUERY_TYPE NOT NULL, ENTITY_TYPE_CODE CODE, DB_KEY CODE NOT NULL DEFAULT '1'); + +CREATE TABLE relationship_types (id TECH_ID NOT NULL, code CODE NOT NULL, label COLUMN_LABEL, parent_label COLUMN_LABEL, child_label COLUMN_LABEL, description DESCRIPTION_2000, registration_timestamp TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP, pers_id_registerer TECH_ID NOT NULL, is_managed_internally BOOLEAN_CHAR NOT NULL DEFAULT 'F', is_internal_namespace BOOLEAN_CHAR NOT NULL DEFAULT 'F', dbin_id TECH_ID NOT NULL); +CREATE TABLE sample_relationships (id TECH_ID NOT NULL, sample_id_parent TECH_ID NOT NULL, relationship_id TECH_ID NOT NULL, sample_id_child TECH_ID NOT NULL); + +CREATE TABLE scripts (ID TECH_ID NOT NULL,DBIN_ID TECH_ID NOT NULL,NAME VARCHAR(200) NOT NULL,DESCRIPTION DESCRIPTION_2000,SCRIPT TEXT_VALUE NOT NULL,REGISTRATION_TIMESTAMP TIME_STAMP_DFL NOT NULL DEFAULT CURRENT_TIMESTAMP,PERS_ID_REGISTERER TECH_ID NOT NULL,ENTITY_KIND ENTITY_KIND); + +-- Creating sequences + +CREATE SEQUENCE CONTROLLED_VOCABULARY_ID_SEQ; +CREATE SEQUENCE CVTE_ID_SEQ; +CREATE SEQUENCE DATABASE_INSTANCE_ID_SEQ; +CREATE SEQUENCE DATA_ID_SEQ; +CREATE SEQUENCE DATA_SET_RELATIONSHIP_ID_SEQ; +CREATE SEQUENCE DATA_STORE_ID_SEQ; +CREATE SEQUENCE DATA_STORE_SERVICES_ID_SEQ; +CREATE SEQUENCE DATA_TYPE_ID_SEQ; +CREATE SEQUENCE ETPT_ID_SEQ; +CREATE SEQUENCE EVENT_ID_SEQ; +CREATE SEQUENCE ATTACHMENT_ID_SEQ; +CREATE SEQUENCE ATTACHMENT_CONTENT_ID_SEQ; +CREATE SEQUENCE EXPERIMENT_ID_SEQ; +CREATE SEQUENCE EXPERIMENT_PROPERTY_ID_SEQ; +CREATE SEQUENCE EXPERIMENT_TYPE_ID_SEQ; +CREATE SEQUENCE FILE_FORMAT_TYPE_ID_SEQ; +CREATE SEQUENCE SPACE_ID_SEQ; +CREATE SEQUENCE INVALIDATION_ID_SEQ; +CREATE SEQUENCE LOCATOR_TYPE_ID_SEQ; +CREATE SEQUENCE MATERIAL_ID_SEQ; +CREATE SEQUENCE MATERIAL_PROPERTY_ID_SEQ; +CREATE SEQUENCE MATERIAL_TYPE_ID_SEQ; +CREATE SEQUENCE MTPT_ID_SEQ; +CREATE SEQUENCE DATA_SET_TYPE_ID_SEQ; +CREATE SEQUENCE PERSON_ID_SEQ; +CREATE SEQUENCE PROJECT_ID_SEQ; +CREATE SEQUENCE PROPERTY_TYPE_ID_SEQ; +CREATE SEQUENCE ROLE_ASSIGNMENT_ID_SEQ; +CREATE SEQUENCE SAMPLE_ID_SEQ; +CREATE SEQUENCE SAMPLE_PROPERTY_ID_SEQ; +CREATE SEQUENCE SAMPLE_TYPE_ID_SEQ; +CREATE SEQUENCE STPT_ID_SEQ; +CREATE SEQUENCE DATA_SET_PROPERTY_ID_SEQ; +CREATE SEQUENCE DSTPT_ID_SEQ; +CREATE SEQUENCE CODE_SEQ; +CREATE SEQUENCE PERM_ID_SEQ; +CREATE SEQUENCE AUTHORIZATION_GROUP_ID_SEQ; +CREATE SEQUENCE FILTER_ID_SEQ; +CREATE SEQUENCE GRID_CUSTOM_COLUMNS_ID_SEQ; +CREATE SEQUENCE QUERY_ID_SEQ; +CREATE SEQUENCE RELATIONSHIP_TYPE_ID_SEQ; +CREATE SEQUENCE SAMPLE_RELATIONSHIP_ID_SEQ; +CREATE SEQUENCE SCRIPT_ID_SEQ; + +-- Creating primary key constraints + +ALTER TABLE CONTROLLED_VOCABULARIES ADD CONSTRAINT COVO_PK PRIMARY KEY(ID); +ALTER TABLE CONTROLLED_VOCABULARY_TERMS ADD CONSTRAINT CVTE_PK PRIMARY KEY(ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_PK PRIMARY KEY(ID); +ALTER TABLE DATABASE_INSTANCES ADD CONSTRAINT DBIN_PK PRIMARY KEY(ID); +ALTER TABLE DATA_STORES ADD CONSTRAINT DAST_PK PRIMARY KEY(ID); +ALTER TABLE DATA_STORE_SERVICES ADD CONSTRAINT DSSE_PK PRIMARY KEY(ID); +ALTER TABLE DATA_TYPES ADD CONSTRAINT DATY_PK PRIMARY KEY(ID); +ALTER TABLE EVENTS ADD CONSTRAINT EVNT_PK PRIMARY KEY(ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_PK PRIMARY KEY(ID); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_PK PRIMARY KEY(ID); +ALTER TABLE ATTACHMENT_CONTENTS ADD CONSTRAINT EXAC_PK PRIMARY KEY(ID); +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_PK PRIMARY KEY(ID); +ALTER TABLE EXPERIMENT_TYPES ADD CONSTRAINT EXTY_PK PRIMARY KEY(ID); +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_PK PRIMARY KEY(ID); +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_PK PRIMARY KEY(DATA_ID); +ALTER TABLE FILE_FORMAT_TYPES ADD CONSTRAINT FFTY_PK PRIMARY KEY(ID); +ALTER TABLE SPACES ADD CONSTRAINT SPACE_PK PRIMARY KEY(ID); +ALTER TABLE INVALIDATIONS ADD CONSTRAINT INVA_PK PRIMARY KEY(ID); +ALTER TABLE LOCATOR_TYPES ADD CONSTRAINT LOTY_PK PRIMARY KEY(ID); +ALTER TABLE MATERIALS ADD CONSTRAINT MATE_PK PRIMARY KEY(ID); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_PK PRIMARY KEY(ID); +ALTER TABLE MATERIAL_TYPES ADD CONSTRAINT MATY_PK PRIMARY KEY(ID); +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_PK PRIMARY KEY(ID); +ALTER TABLE DATA_SET_TYPES ADD CONSTRAINT DSTY_PK PRIMARY KEY(ID); +ALTER TABLE PERSONS ADD CONSTRAINT PERS_PK PRIMARY KEY(ID); +ALTER TABLE PROJECTS ADD CONSTRAINT PROJ_PK PRIMARY KEY(ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_PK PRIMARY KEY(ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_PK PRIMARY KEY(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_PK PRIMARY KEY(ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_PK PRIMARY KEY(ID); +ALTER TABLE SAMPLE_TYPES ADD CONSTRAINT SATY_PK PRIMARY KEY(ID); +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_PK PRIMARY KEY(ID); +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_PK PRIMARY KEY(ID); +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_PK PRIMARY KEY(ID); +ALTER TABLE AUTHORIZATION_GROUPS ADD CONSTRAINT AG_PK PRIMARY KEY(ID); +ALTER TABLE AUTHORIZATION_GROUP_PERSONS ADD CONSTRAINT AGP_PK PRIMARY KEY(PERS_ID,AG_ID); +ALTER TABLE FILTERS ADD CONSTRAINT FILT_PK PRIMARY KEY(ID); +ALTER TABLE GRID_CUSTOM_COLUMNS ADD CONSTRAINT GRID_CUSTOM_COLUMNS_PK PRIMARY KEY(ID); +ALTER TABLE QUERIES ADD CONSTRAINT QUER_PK PRIMARY KEY(ID); +ALTER TABLE relationship_types ADD CONSTRAINT rety_pk PRIMARY KEY (id); +ALTER TABLE sample_relationships ADD CONSTRAINT sare_pk PRIMARY KEY (id); +ALTER TABLE SCRIPTS ADD CONSTRAINT SCRI_PK PRIMARY KEY(ID); + +-- Creating unique constraints + +ALTER TABLE CONTROLLED_VOCABULARIES ADD CONSTRAINT COVO_BK_UK UNIQUE(CODE,IS_INTERNAL_NAMESPACE,DBIN_ID); +ALTER TABLE CONTROLLED_VOCABULARY_TERMS ADD CONSTRAINT CVTE_BK_UK UNIQUE(CODE,COVO_ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_BK_UK UNIQUE(CODE); +ALTER TABLE DATABASE_INSTANCES ADD CONSTRAINT DBIN_BK_UK UNIQUE(CODE); +ALTER TABLE DATABASE_INSTANCES ADD CONSTRAINT DBIN_UUID_UK UNIQUE(UUID); +ALTER TABLE DATA_SET_RELATIONSHIPS ADD CONSTRAINT DSRE_BK_UK UNIQUE(DATA_ID_CHILD,DATA_ID_PARENT); +ALTER TABLE DATA_STORE_SERVICES ADD CONSTRAINT DSSE_BK_UK UNIQUE(KEY, DATA_STORE_ID); +ALTER TABLE DATA_STORE_SERVICE_DATA_SET_TYPES ADD CONSTRAINT DSSDST_BK_UK UNIQUE(DATA_STORE_SERVICE_ID, DATA_SET_TYPE_ID); +ALTER TABLE DATA_STORES ADD CONSTRAINT DAST_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE DATA_TYPES ADD CONSTRAINT DATY_BK_UK UNIQUE(CODE); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_BK_UK UNIQUE(CODE,PROJ_ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_PI_UK UNIQUE(PERM_ID); +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_BK_UK UNIQUE(EXPE_ID,ETPT_ID); +ALTER TABLE EXPERIMENT_TYPES ADD CONSTRAINT EXTY_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_BK_UK UNIQUE(EXTY_ID,PRTY_ID); +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_BK_UK UNIQUE(LOCATION,LOTY_ID); +ALTER TABLE FILE_FORMAT_TYPES ADD CONSTRAINT FFTY_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE SPACES ADD CONSTRAINT SPACE_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE LOCATOR_TYPES ADD CONSTRAINT LOTY_BK_UK UNIQUE(CODE); +ALTER TABLE MATERIALS ADD CONSTRAINT MATE_BK_UK UNIQUE(CODE,MATY_ID,DBIN_ID); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_BK_UK UNIQUE(MATE_ID,MTPT_ID); +ALTER TABLE MATERIAL_TYPES ADD CONSTRAINT MATY_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_BK_UK UNIQUE(MATY_ID,PRTY_ID); +ALTER TABLE DATA_SET_TYPES ADD CONSTRAINT DSTY_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE PERSONS ADD CONSTRAINT PERS_BK_UK UNIQUE(DBIN_ID,USER_ID); +ALTER TABLE PROJECTS ADD CONSTRAINT PROJ_BK_UK UNIQUE(CODE,SPACE_ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_BK_UK UNIQUE(CODE,IS_INTERNAL_NAMESPACE,DBIN_ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_PE_SPACE_BK_UK UNIQUE(PERS_ID_GRANTEE,ROLE_CODE,SPACE_ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_PE_INSTANCE_BK_UK UNIQUE(PERS_ID_GRANTEE,ROLE_CODE,DBIN_ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_AG_SPACE_BK_UK UNIQUE(AG_ID_GRANTEE,ROLE_CODE,SPACE_ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_AG_INSTANCE_BK_UK UNIQUE(AG_ID_GRANTEE,ROLE_CODE,DBIN_ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_PI_UK UNIQUE(PERM_ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_BK_UK UNIQUE(SAMP_ID,STPT_ID); +ALTER TABLE SAMPLE_TYPES ADD CONSTRAINT SATY_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_BK_UK UNIQUE(SATY_ID,PRTY_ID); +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_BK_UK UNIQUE(DSTY_ID,PRTY_ID); +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_BK_UK UNIQUE(DS_ID,DSTPT_ID); +-- NOTE: following uniqueness constraints for attachments work, because (null != null) in Postgres +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_EXPE_BK_UK UNIQUE(EXPE_ID,FILE_NAME,VERSION); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_PROJ_BK_UK UNIQUE(PROJ_ID,FILE_NAME,VERSION); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_SAMP_BK_UK UNIQUE(SAMP_ID,FILE_NAME,VERSION); +ALTER TABLE AUTHORIZATION_GROUPS ADD CONSTRAINT AG_BK_UK UNIQUE(CODE,DBIN_ID); +ALTER TABLE FILTERS ADD CONSTRAINT FILT_BK_UK UNIQUE(NAME, DBIN_ID, GRID_ID); +ALTER TABLE GRID_CUSTOM_COLUMNS ADD CONSTRAINT GRID_CUSTOM_COLUMNS_BK_UK UNIQUE(CODE, DBIN_ID, GRID_ID); +ALTER TABLE QUERIES ADD CONSTRAINT QUER_BK_UK UNIQUE(NAME, DBIN_ID); +ALTER TABLE sample_relationships ADD CONSTRAINT sare_bk_uk UNIQUE(sample_id_child,sample_id_parent,relationship_id); +ALTER TABLE relationship_types ADD CONSTRAINT rety_uk UNIQUE(code,dbin_id); +ALTER TABLE SCRIPTS ADD CONSTRAINT SCRI_UK UNIQUE(NAME,DBIN_ID); + +-- Creating foreign key constraints + +ALTER TABLE CONTROLLED_VOCABULARIES ADD CONSTRAINT COVO_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE CONTROLLED_VOCABULARIES ADD CONSTRAINT COVO_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE CONTROLLED_VOCABULARY_TERMS ADD CONSTRAINT CVTE_COVO_FK FOREIGN KEY (COVO_ID) REFERENCES CONTROLLED_VOCABULARIES(ID); +ALTER TABLE CONTROLLED_VOCABULARY_TERMS ADD CONSTRAINT CVTE_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_DSTY_FK FOREIGN KEY (DSTY_ID) REFERENCES DATA_SET_TYPES(ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_EXPE_FK FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS(ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_SAMP_FK FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES(ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_DAST_FK FOREIGN KEY (DAST_ID) REFERENCES DATA_STORES(ID); +ALTER TABLE DATA ADD CONSTRAINT DATA_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE DATA_SET_RELATIONSHIPS ADD CONSTRAINT DSRE_DATA_FK_CHILD FOREIGN KEY (DATA_ID_CHILD) REFERENCES DATA(ID); +ALTER TABLE DATA_SET_RELATIONSHIPS ADD CONSTRAINT DSRE_DATA_FK_PARENT FOREIGN KEY (DATA_ID_PARENT) REFERENCES DATA(ID); +ALTER TABLE sample_relationships ADD CONSTRAINT sare_data_fk_child FOREIGN KEY (sample_id_child) REFERENCES samples(id) ON DELETE CASCADE; +ALTER TABLE sample_relationships ADD CONSTRAINT sare_data_fk_parent FOREIGN KEY (sample_id_parent) REFERENCES samples(id) ON DELETE CASCADE; +ALTER TABLE sample_relationships ADD CONSTRAINT sare_data_fk_relationship FOREIGN KEY (relationship_id) REFERENCES relationship_types(id); +ALTER TABLE DATA_STORES ADD CONSTRAINT DAST_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE DATA_STORE_SERVICES ADD CONSTRAINT DSSE_DS_FK FOREIGN KEY (DATA_STORE_ID) REFERENCES DATA_STORES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_STORE_SERVICE_DATA_SET_TYPES ADD CONSTRAINT DSSDST_DS_FK FOREIGN KEY (DATA_STORE_SERVICE_ID) REFERENCES DATA_STORE_SERVICES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_STORE_SERVICE_DATA_SET_TYPES ADD CONSTRAINT DSSDST_DST_FK FOREIGN KEY (DATA_SET_TYPE_ID) REFERENCES DATA_SET_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE EVENTS ADD CONSTRAINT EVNT_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_EXTY_FK FOREIGN KEY (EXTY_ID) REFERENCES EXPERIMENT_TYPES(ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_INVA_FK FOREIGN KEY (INVA_ID) REFERENCES INVALIDATIONS(ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_MATE_FK FOREIGN KEY (MATE_ID_STUDY_OBJECT) REFERENCES MATERIALS(ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE EXPERIMENTS ADD CONSTRAINT EXPE_PROJ_FK FOREIGN KEY (PROJ_ID) REFERENCES PROJECTS(ID); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_EXPE_FK FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS(ID); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_PROJ_FK FOREIGN KEY (PROJ_ID) REFERENCES PROJECTS(ID); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_SAMP_FK FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES(ID); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_CONT_FK FOREIGN KEY (EXAC_ID) REFERENCES ATTACHMENT_CONTENTS(ID); +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_CVTE_FK FOREIGN KEY (CVTE_ID) REFERENCES CONTROLLED_VOCABULARY_TERMS(ID); +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_ETPT_FK FOREIGN KEY (ETPT_ID) REFERENCES EXPERIMENT_TYPE_PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_EXPE_FK FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS(ID); +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_MAPR_FK FOREIGN KEY (MATE_PROP_ID) REFERENCES MATERIALS(ID); +ALTER TABLE EXPERIMENT_TYPES ADD CONSTRAINT EXTY_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_EXTY_FK FOREIGN KEY (EXTY_ID) REFERENCES EXPERIMENT_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_PRTY_FK FOREIGN KEY (PRTY_ID) REFERENCES PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_CVTE_FK FOREIGN KEY (CVTE_ID_STOR_FMT) REFERENCES CONTROLLED_VOCABULARY_TERMS(ID); +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_CVTE_STORED_ON_FK FOREIGN KEY (CVTE_ID_STORE) REFERENCES CONTROLLED_VOCABULARY_TERMS(ID); +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_DATA_FK FOREIGN KEY (DATA_ID) REFERENCES DATA(ID); +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_FFTY_FK FOREIGN KEY (FFTY_ID) REFERENCES FILE_FORMAT_TYPES(ID); +ALTER TABLE EXTERNAL_DATA ADD CONSTRAINT EXDA_LOTY_FK FOREIGN KEY (LOTY_ID) REFERENCES LOCATOR_TYPES(ID); +ALTER TABLE FILE_FORMAT_TYPES ADD CONSTRAINT FFTY_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE SPACES ADD CONSTRAINT SPACE_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE SPACES ADD CONSTRAINT SPACE_PERS_FK_REGISTERER FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE INVALIDATIONS ADD CONSTRAINT INVA_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE MATERIALS ADD CONSTRAINT MATE_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE MATERIALS ADD CONSTRAINT MATE_MATY_FK FOREIGN KEY (MATY_ID) REFERENCES MATERIAL_TYPES(ID); +ALTER TABLE MATERIALS ADD CONSTRAINT MATE_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_CVTE_FK FOREIGN KEY (CVTE_ID) REFERENCES CONTROLLED_VOCABULARY_TERMS(ID); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_MAPR_FK FOREIGN KEY (MATE_PROP_ID) REFERENCES MATERIALS(ID); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_MATE_FK FOREIGN KEY (MATE_ID) REFERENCES MATERIALS(ID); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_MTPT_FK FOREIGN KEY (MTPT_ID) REFERENCES MATERIAL_TYPE_PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE MATERIAL_TYPES ADD CONSTRAINT MATY_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_MATY_FK FOREIGN KEY (MATY_ID) REFERENCES MATERIAL_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_PRTY_FK FOREIGN KEY (PRTY_ID) REFERENCES PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_SET_TYPES ADD CONSTRAINT DSTY_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE PERSONS ADD CONSTRAINT PERS_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE PERSONS ADD CONSTRAINT PERS_SPACE_FK FOREIGN KEY (SPACE_ID) REFERENCES SPACES(ID); +ALTER TABLE PERSONS ADD CONSTRAINT PERS_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE PROJECTS ADD CONSTRAINT PROJ_SPACE_FK FOREIGN KEY (SPACE_ID) REFERENCES SPACES(ID); +ALTER TABLE PROJECTS ADD CONSTRAINT PROJ_PERS_FK_LEADER FOREIGN KEY (PERS_ID_LEADER) REFERENCES PERSONS(ID); +ALTER TABLE PROJECTS ADD CONSTRAINT PROJ_PERS_FK_REGISTERER FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_COVO_FK FOREIGN KEY (COVO_ID) REFERENCES CONTROLLED_VOCABULARIES(ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_DATY_FK FOREIGN KEY (DATY_ID) REFERENCES DATA_TYPES(ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE PROPERTY_TYPES ADD CONSTRAINT PRTY_MATY_FK FOREIGN KEY (MATY_PROP_ID) REFERENCES MATERIAL_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_SPACE_FK FOREIGN KEY (SPACE_ID) REFERENCES SPACES(ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_PERS_FK_GRANTEE FOREIGN KEY (PERS_ID_GRANTEE) REFERENCES PERSONS(ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_AG_FK_GRANTEE FOREIGN KEY (AG_ID_GRANTEE) REFERENCES AUTHORIZATION_GROUPS(ID); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_PERS_FK_REGISTERER FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_SPACE_FK FOREIGN KEY (SPACE_ID) REFERENCES SPACES(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_INVA_FK FOREIGN KEY (INVA_ID) REFERENCES INVALIDATIONS(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_SAMP_FK_PART_OF FOREIGN KEY (SAMP_ID_PART_OF) REFERENCES SAMPLES(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_EXPE_FK FOREIGN KEY (EXPE_ID) REFERENCES EXPERIMENTS(ID); +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_SATY_FK FOREIGN KEY (SATY_ID) REFERENCES SAMPLE_TYPES(ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_CVTE_FK FOREIGN KEY (CVTE_ID) REFERENCES CONTROLLED_VOCABULARY_TERMS(ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_MAPR_FK FOREIGN KEY (MATE_PROP_ID) REFERENCES MATERIALS(ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_SAMP_FK FOREIGN KEY (SAMP_ID) REFERENCES SAMPLES(ID); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_STPT_FK FOREIGN KEY (STPT_ID) REFERENCES SAMPLE_TYPE_PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE SAMPLE_TYPES ADD CONSTRAINT SATY_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_PRTY_FK FOREIGN KEY (PRTY_ID) REFERENCES PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_SATY_FK FOREIGN KEY (SATY_ID) REFERENCES SAMPLE_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_DSTY_FK FOREIGN KEY (DSTY_ID) REFERENCES DATA_SET_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_PRTY_FK FOREIGN KEY (PRTY_ID) REFERENCES PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_CVTE_FK FOREIGN KEY (CVTE_ID) REFERENCES CONTROLLED_VOCABULARY_TERMS(ID); +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_DSTPT_FK FOREIGN KEY (DSTPT_ID) REFERENCES DATA_SET_TYPE_PROPERTY_TYPES(ID) ON DELETE CASCADE; +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_DS_FK FOREIGN KEY (DS_ID) REFERENCES DATA(ID); +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_MAPR_FK FOREIGN KEY (MATE_PROP_ID) REFERENCES MATERIALS(ID); +ALTER TABLE AUTHORIZATION_GROUPS ADD CONSTRAINT AG_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE AUTHORIZATION_GROUP_PERSONS ADD CONSTRAINT AGP_AG_FK FOREIGN KEY (AG_ID) REFERENCES AUTHORIZATION_GROUPS(ID); +ALTER TABLE AUTHORIZATION_GROUP_PERSONS ADD CONSTRAINT AGP_PERS_FK FOREIGN KEY (PERS_ID) REFERENCES PERSONS(ID); +ALTER TABLE AUTHORIZATION_GROUPS ADD CONSTRAINT AG_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); + +ALTER TABLE FILTERS ADD CONSTRAINT FILT_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE FILTERS ADD CONSTRAINT FILT_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE GRID_CUSTOM_COLUMNS ADD CONSTRAINT GRID_CUSTOM_COLUMNS_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE GRID_CUSTOM_COLUMNS ADD CONSTRAINT GRID_CUSTOM_COLUMNS_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE QUERIES ADD CONSTRAINT QUER_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE QUERIES ADD CONSTRAINT QUER_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); + +ALTER TABLE SCRIPTS ADD CONSTRAINT SCRI_DBIN_FK FOREIGN KEY (DBIN_ID) REFERENCES DATABASE_INSTANCES(ID); +ALTER TABLE SCRIPTS ADD CONSTRAINT SCRI_PERS_FK FOREIGN KEY (PERS_ID_REGISTERER) REFERENCES PERSONS(ID); +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_SCRIPT_FK FOREIGN KEY (SCRIPT_ID) REFERENCES SCRIPTS(ID); +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_SCRIPT_FK FOREIGN KEY (SCRIPT_ID) REFERENCES SCRIPTS(ID); +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_SCRIPT_FK FOREIGN KEY (SCRIPT_ID) REFERENCES SCRIPTS(ID); +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_SCRIPT_FK FOREIGN KEY (SCRIPT_ID) REFERENCES SCRIPTS(ID); + +-- Creating check constraints + +ALTER TABLE EXPERIMENT_PROPERTIES ADD CONSTRAINT EXPR_CK CHECK + ((VALUE IS NOT NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NOT NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NOT NULL) + ); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_DBIN_SPACE_ARC_CK CHECK ((DBIN_ID IS NOT NULL AND SPACE_ID IS NULL) OR (DBIN_ID IS NULL AND SPACE_ID IS NOT NULL)); +ALTER TABLE ROLE_ASSIGNMENTS ADD CONSTRAINT ROAS_AG_PERS_ARC_CK CHECK ((AG_ID_GRANTEE IS NOT NULL AND PERS_ID_GRANTEE IS NULL) OR (AG_ID_GRANTEE IS NULL AND PERS_ID_GRANTEE IS NOT NULL)); + +ALTER TABLE SAMPLES ADD CONSTRAINT SAMP_DBIN_SPACE_ARC_CK CHECK ((DBIN_ID IS NOT NULL AND SPACE_ID IS NULL) OR (DBIN_ID IS NULL AND SPACE_ID IS NOT NULL)); +ALTER TABLE SAMPLE_PROPERTIES ADD CONSTRAINT SAPR_CK CHECK + ((VALUE IS NOT NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NOT NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NOT NULL) + ); +ALTER TABLE MATERIAL_PROPERTIES ADD CONSTRAINT MAPR_CK CHECK + ((VALUE IS NOT NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NOT NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NOT NULL) + ); +ALTER TABLE DATA_SET_PROPERTIES ADD CONSTRAINT DSPR_CK CHECK + ((VALUE IS NOT NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NOT NULL AND MATE_PROP_ID IS NULL) OR + (VALUE IS NULL AND CVTE_ID IS NULL AND MATE_PROP_ID IS NOT NULL) + ); +ALTER TABLE ATTACHMENTS ADD CONSTRAINT ATTA_ARC_CK CHECK + ((EXPE_ID IS NOT NULL AND PROJ_ID IS NULL AND SAMP_ID IS NULL) OR + (EXPE_ID IS NULL AND PROJ_ID IS NOT NULL AND SAMP_ID IS NULL) OR + (EXPE_ID IS NULL AND PROJ_ID IS NULL AND SAMP_ID IS NOT NULL) + ); +ALTER TABLE events ADD CONSTRAINT evnt_et_enum_ck CHECK + (entity_type IN ('ATTACHMENT', 'DATASET', 'EXPERIMENT', 'SPACE', 'MATERIAL', 'PROJECT', 'PROPERTY_TYPE', 'SAMPLE', 'VOCABULARY', 'AUTHORIZATION_GROUP')); +ALTER TABLE controlled_vocabulary_terms ADD CONSTRAINT cvte_ck CHECK (ordinal > 0); + +ALTER TABLE MATERIAL_TYPE_PROPERTY_TYPES ADD CONSTRAINT MTPT_CK CHECK ((IS_DYNAMIC IS TRUE AND SCRIPT_ID IS NOT NULL) OR (IS_DYNAMIC IS FALSE AND SCRIPT_ID IS NULL)); +ALTER TABLE SAMPLE_TYPE_PROPERTY_TYPES ADD CONSTRAINT STPT_CK CHECK ((IS_DYNAMIC IS TRUE AND SCRIPT_ID IS NOT NULL) OR (IS_DYNAMIC IS FALSE AND SCRIPT_ID IS NULL)); +ALTER TABLE EXPERIMENT_TYPE_PROPERTY_TYPES ADD CONSTRAINT ETPT_CK CHECK ((IS_DYNAMIC IS TRUE AND SCRIPT_ID IS NOT NULL) OR (IS_DYNAMIC IS FALSE AND SCRIPT_ID IS NULL)); +ALTER TABLE DATA_SET_TYPE_PROPERTY_TYPES ADD CONSTRAINT DSTPT_CK CHECK ((IS_DYNAMIC IS TRUE AND SCRIPT_ID IS NOT NULL) OR (IS_DYNAMIC IS FALSE AND SCRIPT_ID IS NULL)); + +-- Creating indices + +CREATE INDEX COVO_PERS_FK_I ON CONTROLLED_VOCABULARIES (PERS_ID_REGISTERER); +CREATE INDEX CVTE_COVO_FK_I ON CONTROLLED_VOCABULARY_TERMS (COVO_ID); +CREATE INDEX CVTE_PERS_FK_I ON CONTROLLED_VOCABULARY_TERMS (PERS_ID_REGISTERER); +CREATE INDEX DATA_DSTY_FK_I ON DATA (DSTY_ID); +CREATE INDEX DATA_SAMP_FK_I ON DATA (SAMP_ID); +CREATE INDEX DATA_EXPE_FK_I ON DATA (EXPE_ID); +CREATE INDEX DAST_DBIN_FK_I ON DATA_STORES (DBIN_ID); +CREATE INDEX DSRE_DATA_FK_I_CHILD ON DATA_SET_RELATIONSHIPS (DATA_ID_CHILD); +CREATE INDEX DSRE_DATA_FK_I_PARENT ON DATA_SET_RELATIONSHIPS (DATA_ID_PARENT); +CREATE INDEX sare_data_fk_i_child ON sample_relationships (sample_id_child); +CREATE INDEX sare_data_fk_i_parent ON sample_relationships (sample_id_parent); +CREATE INDEX sare_data_fk_i_relationship ON sample_relationships (relationship_id); +CREATE INDEX DSSE_DS_FK_I ON DATA_STORE_SERVICES (DATA_STORE_ID); +CREATE INDEX DSSDST_DS_FK_I ON DATA_STORE_SERVICE_DATA_SET_TYPES (DATA_STORE_SERVICE_ID); +CREATE INDEX DSSDST_DST_FK_I ON DATA_STORE_SERVICE_DATA_SET_TYPES (DATA_SET_TYPE_ID); +CREATE INDEX ETPT_EXTY_FK_I ON EXPERIMENT_TYPE_PROPERTY_TYPES (EXTY_ID); +CREATE INDEX ETPT_PERS_FK_I ON EXPERIMENT_TYPE_PROPERTY_TYPES (PERS_ID_REGISTERER); +CREATE INDEX ETPT_PRTY_FK_I ON EXPERIMENT_TYPE_PROPERTY_TYPES (PRTY_ID); +CREATE INDEX EVNT_PERS_FK_I ON EVENTS (PERS_ID_REGISTERER); +CREATE INDEX ATTA_EXPE_FK_I ON ATTACHMENTS (EXPE_ID); +CREATE INDEX ATTA_SAMP_FK_I ON ATTACHMENTS (SAMP_ID); +CREATE INDEX ATTA_PROJ_FK_I ON ATTACHMENTS (PROJ_ID); +CREATE INDEX ATTA_PERS_FK_I ON ATTACHMENTS (PERS_ID_REGISTERER); +CREATE INDEX ATTA_EXAC_FK_I ON ATTACHMENTS (EXAC_ID); +CREATE INDEX EXDA_CVTE_FK_I ON EXTERNAL_DATA (CVTE_ID_STOR_FMT); +CREATE INDEX EXDA_CVTE_STORED_ON_FK_I ON EXTERNAL_DATA (CVTE_ID_STORE); +CREATE INDEX EXDA_FFTY_FK_I ON EXTERNAL_DATA (FFTY_ID); +CREATE INDEX EXDA_LOTY_FK_I ON EXTERNAL_DATA (LOTY_ID); +CREATE INDEX EXPE_EXTY_FK_I ON EXPERIMENTS (EXTY_ID); +CREATE INDEX EXPE_INVA_FK_I ON EXPERIMENTS (INVA_ID); +CREATE INDEX EXPE_MATE_FK_I ON EXPERIMENTS (MATE_ID_STUDY_OBJECT); +CREATE INDEX EXPE_PERS_FK_I ON EXPERIMENTS (PERS_ID_REGISTERER); +CREATE INDEX EXPE_PROJ_FK_I ON EXPERIMENTS (PROJ_ID); +CREATE INDEX EXPR_CVTE_FK_I ON EXPERIMENT_PROPERTIES (CVTE_ID); +CREATE INDEX EXPR_ETPT_FK_I ON EXPERIMENT_PROPERTIES (ETPT_ID); +CREATE INDEX EXPR_EXPE_FK_I ON EXPERIMENT_PROPERTIES (EXPE_ID); +CREATE INDEX EXPR_PERS_FK_I ON EXPERIMENT_PROPERTIES (PERS_ID_REGISTERER); +CREATE INDEX SPACE_DBIN_FK_I ON SPACES (DBIN_ID); +CREATE INDEX SPACE_PERS_REGISTERED_BY_FK_I ON SPACES (PERS_ID_REGISTERER); +CREATE INDEX INVA_PERS_FK_I ON INVALIDATIONS (PERS_ID_REGISTERER); +CREATE INDEX MAPR_CVTE_FK_I ON MATERIAL_PROPERTIES (CVTE_ID); +CREATE INDEX MAPR_MATE_FK_I ON MATERIAL_PROPERTIES (MATE_ID); +CREATE INDEX MAPR_MTPT_FK_I ON MATERIAL_PROPERTIES (MTPT_ID); +CREATE INDEX MAPR_PERS_FK_I ON MATERIAL_PROPERTIES (PERS_ID_REGISTERER); +CREATE INDEX MATE_MATY_FK_I ON MATERIALS (MATY_ID); +CREATE INDEX MATE_PERS_FK_I ON MATERIALS (PERS_ID_REGISTERER); +CREATE INDEX MTPT_MATY_FK_I ON MATERIAL_TYPE_PROPERTY_TYPES (MATY_ID); +CREATE INDEX MTPT_PERS_FK_I ON MATERIAL_TYPE_PROPERTY_TYPES (PERS_ID_REGISTERER); +CREATE INDEX MTPT_PRTY_FK_I ON MATERIAL_TYPE_PROPERTY_TYPES (PRTY_ID); +CREATE INDEX PERS_SPACE_FK_I ON PERSONS (SPACE_ID); +CREATE INDEX PROJ_SPACE_FK_I ON PROJECTS (SPACE_ID); +CREATE INDEX PROJ_PERS_FK_I_LEADER ON PROJECTS (PERS_ID_LEADER); +CREATE INDEX PROJ_PERS_FK_I_REGISTERER ON PROJECTS (PERS_ID_REGISTERER); +CREATE INDEX PRTY_COVO_FK_I ON PROPERTY_TYPES (COVO_ID); +CREATE INDEX PRTY_DATY_FK_I ON PROPERTY_TYPES (DATY_ID); +CREATE INDEX PRTY_PERS_FK_I ON PROPERTY_TYPES (PERS_ID_REGISTERER); +CREATE INDEX ROAS_DBIN_FK_I ON ROLE_ASSIGNMENTS (DBIN_ID); +CREATE INDEX ROAS_SPACE_FK_I ON ROLE_ASSIGNMENTS (SPACE_ID); +CREATE INDEX ROAS_PERS_FK_I_GRANTEE ON ROLE_ASSIGNMENTS (PERS_ID_GRANTEE); +CREATE INDEX ROAS_AG_FK_I_GRANTEE ON ROLE_ASSIGNMENTS (AG_ID_GRANTEE); +CREATE INDEX ROAS_PERS_FK_I_REGISTERER ON ROLE_ASSIGNMENTS (PERS_ID_REGISTERER); +CREATE INDEX SAMP_INVA_FK_I ON SAMPLES (INVA_ID); +CREATE INDEX SAMP_PERS_FK_I ON SAMPLES (PERS_ID_REGISTERER); +CREATE INDEX SAMP_SAMP_FK_I_PART_OF ON SAMPLES (SAMP_ID_PART_OF); +CREATE INDEX SAMP_EXPE_FK_I ON SAMPLES (EXPE_ID); +CREATE INDEX SAMP_CODE_I ON SAMPLES (CODE); +CREATE INDEX SAMP_SATY_FK_I ON SAMPLES (SATY_ID); +CREATE INDEX SAPR_CVTE_FK_I ON SAMPLE_PROPERTIES (CVTE_ID); +CREATE INDEX SAPR_PERS_FK_I ON SAMPLE_PROPERTIES (PERS_ID_REGISTERER); +CREATE INDEX SAPR_SAMP_FK_I ON SAMPLE_PROPERTIES (SAMP_ID); +CREATE INDEX SAPR_STPT_FK_I ON SAMPLE_PROPERTIES (STPT_ID); +CREATE INDEX STPT_PERS_FK_I ON SAMPLE_TYPE_PROPERTY_TYPES (PERS_ID_REGISTERER); +CREATE INDEX STPT_PRTY_FK_I ON SAMPLE_TYPE_PROPERTY_TYPES (PRTY_ID); +CREATE INDEX STPT_SATY_FK_I ON SAMPLE_TYPE_PROPERTY_TYPES (SATY_ID); +CREATE INDEX DSPR_CVTE_FK_I ON DATA_SET_PROPERTIES (CVTE_ID); +CREATE INDEX DSPR_DSTPT_FK_I ON DATA_SET_PROPERTIES (DSTPT_ID); +CREATE INDEX DSPR_DS_FK_I ON DATA_SET_PROPERTIES (DS_ID); +CREATE INDEX DSPR_PERS_FK_I ON DATA_SET_PROPERTIES (PERS_ID_REGISTERER); +CREATE INDEX DSTPT_DSTY_FK_I ON DATA_SET_TYPE_PROPERTY_TYPES (DSTY_ID); +CREATE INDEX DSTPT_PERS_FK_I ON DATA_SET_TYPE_PROPERTY_TYPES (PERS_ID_REGISTERER); +CREATE INDEX DSTPT_PRTY_FK_I ON DATA_SET_TYPE_PROPERTY_TYPES (PRTY_ID); +CREATE INDEX FILT_PERS_FK_I ON FILTERS (PERS_ID_REGISTERER); +CREATE INDEX FILT_DBIN_FK_I ON FILTERS (DBIN_ID); +CREATE INDEX GRID_CUSTOM_COLUMNS_PERS_FK_I ON GRID_CUSTOM_COLUMNS (PERS_ID_REGISTERER); +CREATE INDEX GRID_CUSTOM_COLUMNS_DBIN_FK_I ON GRID_CUSTOM_COLUMNS (DBIN_ID); +CREATE INDEX SCRIPT_PERS_FK_I ON SCRIPTS (PERS_ID_REGISTERER); +CREATE INDEX SCRIPT_DBIN_FK_I ON SCRIPTS (DBIN_ID); \ No newline at end of file diff --git a/openbis/source/sql/postgresql/063/domains-063.sql b/openbis/source/sql/postgresql/063/domains-063.sql new file mode 100644 index 00000000000..1731c94e500 --- /dev/null +++ b/openbis/source/sql/postgresql/063/domains-063.sql @@ -0,0 +1,27 @@ +-- Creating domains + +CREATE DOMAIN AUTHORIZATION_ROLE AS VARCHAR(40) CHECK (VALUE IN ('ADMIN', 'POWER_USER', 'USER', 'OBSERVER', 'ETL_SERVER')); +CREATE DOMAIN BOOLEAN_CHAR AS BOOLEAN DEFAULT FALSE; +CREATE DOMAIN BOOLEAN_CHAR_OR_UNKNOWN AS CHAR(1) DEFAULT 'U' CHECK (VALUE IN ('F', 'T', 'U')); +CREATE DOMAIN CODE AS VARCHAR(60); +CREATE DOMAIN COLUMN_LABEL AS VARCHAR(128); +CREATE DOMAIN DATA_STORE_SERVICE_KIND AS VARCHAR(40) CHECK (VALUE IN ('PROCESSING', 'QUERIES')); +CREATE DOMAIN DATA_STORE_SERVICE_REPORTING_PLUGIN_TYPE AS VARCHAR(40) CHECK (VALUE IN ('TABLE_MODEL', 'DSS_LINK')); +CREATE DOMAIN EVENT_TYPE AS VARCHAR(40) CHECK (VALUE IN ('DELETION', 'INVALIDATION', 'MOVEMENT')); +CREATE DOMAIN FILE AS BYTEA; +CREATE DOMAIN FILE_NAME AS VARCHAR(100); +CREATE DOMAIN TEXT_VALUE AS TEXT; +CREATE DOMAIN OBJECT_NAME AS VARCHAR(50); +CREATE DOMAIN REAL_VALUE AS REAL; +CREATE DOMAIN TECH_ID AS BIGINT; +CREATE DOMAIN TIME_STAMP AS TIMESTAMP WITH TIME ZONE; +CREATE DOMAIN TIME_STAMP_DFL AS TIMESTAMP WITH TIME ZONE NOT NULL DEFAULT CURRENT_TIMESTAMP; +CREATE DOMAIN USER_ID AS VARCHAR(50); +CREATE DOMAIN TITLE_100 AS VARCHAR(100); +CREATE DOMAIN GRID_EXPRESSION AS VARCHAR(2000); +CREATE DOMAIN GRID_ID AS VARCHAR(200); +CREATE DOMAIN ORDINAL_INT AS BIGINT CHECK (VALUE > 0); +CREATE DOMAIN DESCRIPTION_2000 AS VARCHAR(2000); +CREATE DOMAIN ARCHIVING_STATUS AS VARCHAR(100) CHECK (VALUE IN ('LOCKED', 'AVAILABLE', 'ARCHIVED', 'ARCHIVE_PENDING', 'UNARCHIVE_PENDING')); +CREATE DOMAIN QUERY_TYPE AS VARCHAR(40) CHECK (VALUE IN ('GENERIC', 'EXPERIMENT', 'SAMPLE', 'DATA_SET', 'MATERIAL')); +CREATE DOMAIN ENTITY_KIND AS VARCHAR(40) CHECK (VALUE IN ('SAMPLE', 'EXPERIMENT', 'DATA_SET', 'MATERIAL')); \ No newline at end of file diff --git a/openbis/source/sql/postgresql/063/function-063.sql b/openbis/source/sql/postgresql/063/function-063.sql new file mode 100644 index 00000000000..170393d9dcb --- /dev/null +++ b/openbis/source/sql/postgresql/063/function-063.sql @@ -0,0 +1,274 @@ +-- Creating Functions + +------------------------------------------------------------------------------------ +-- Purpose: Create function RENAME_SEQUENCE() that is required for renaming the sequences belonging to tables +------------------------------------------------------------------------------------ +CREATE FUNCTION RENAME_SEQUENCE(OLD_NAME VARCHAR, NEW_NAME VARCHAR) RETURNS INTEGER AS $$ +DECLARE + CURR_SEQ_VAL INTEGER; +BEGIN + SELECT INTO CURR_SEQ_VAL NEXTVAL(OLD_NAME); + EXECUTE 'CREATE SEQUENCE ' || NEW_NAME || ' START WITH ' || CURR_SEQ_VAL; + EXECUTE 'DROP SEQUENCE ' || OLD_NAME; + RETURN CURR_SEQ_VAL; +END; +$$ LANGUAGE 'plpgsql'; + + +------------------------------------------------------------------------------------ +-- Purpose: Create trigger CONTROLLED_VOCABULARY_CHECK +------------------------------------------------------------------------------------ + +CREATE OR REPLACE FUNCTION CONTROLLED_VOCABULARY_CHECK() RETURNS trigger AS $$ +DECLARE + v_code CODE; +BEGIN + + select code into v_code from data_types where id = NEW.daty_id; + + -- Check if the data is of type "CONTROLLEDVOCABULARY" + if v_code = 'CONTROLLEDVOCABULARY' then + if NEW.covo_id IS NULL then + RAISE EXCEPTION 'Insert/Update of Property Type (Code: %) failed, as its Data Type is CONTROLLEDVOCABULARY, but it is not linked to a Controlled Vocabulary.', NEW.code; + end if; + end if; + + RETURN NEW; + +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER CONTROLLED_VOCABULARY_CHECK BEFORE INSERT OR UPDATE ON PROPERTY_TYPES + FOR EACH ROW EXECUTE PROCEDURE CONTROLLED_VOCABULARY_CHECK(); + + +------------------------------------------------------------------------------------ +-- Purpose: Create trigger EXTERNAL_DATA_STORAGE_FORMAT_CHECK +------------------------------------------------------------------------------------ + +CREATE OR REPLACE FUNCTION EXTERNAL_DATA_STORAGE_FORMAT_CHECK() RETURNS trigger AS $$ +DECLARE + v_covo_code CODE; + data_code CODE; +BEGIN + + select code into v_covo_code from controlled_vocabularies + where is_internal_namespace = true and + id = (select covo_id from controlled_vocabulary_terms where id = NEW.cvte_id_stor_fmt); + -- Check if the data storage format is a term of the controlled vocabulary "STORAGE_FORMAT" + if v_covo_code != 'STORAGE_FORMAT' then + select code into data_code from data where id = NEW.data_id; + RAISE EXCEPTION 'Insert/Update of Data (Code: %) failed, as its Storage Format is %, but is required to be STORAGE_FORMAT.', data_code, v_covo_code; + end if; + + RETURN NEW; + +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER EXTERNAL_DATA_STORAGE_FORMAT_CHECK BEFORE INSERT OR UPDATE ON EXTERNAL_DATA + FOR EACH ROW EXECUTE PROCEDURE EXTERNAL_DATA_STORAGE_FORMAT_CHECK(); + + +------------------------------------------------------------------------------------ +-- Purpose: Create triggers for checking sample code uniqueness +------------------------------------------------------------------------------------ + +CREATE OR REPLACE FUNCTION SAMPLE_CODE_UNIQUENESS_CHECK() RETURNS trigger AS $$ +DECLARE + counter INTEGER; +BEGIN + LOCK TABLE samples IN EXCLUSIVE MODE; + + IF (NEW.samp_id_part_of is NULL) THEN + IF (NEW.dbin_id is not NULL) THEN + SELECT count(*) into counter FROM samples + where id != NEW.id and code = NEW.code and samp_id_part_of is NULL and dbin_id = NEW.dbin_id; + IF (counter > 0) THEN + RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because database instance sample with the same code already exists.', NEW.code; + END IF; + ELSIF (NEW.space_id is not NULL) THEN + SELECT count(*) into counter FROM samples + where id != NEW.id and code = NEW.code and samp_id_part_of is NULL and space_id = NEW.space_id; + IF (counter > 0) THEN + RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because space sample with the same code already exists.', NEW.code; + END IF; + END IF; + ELSE + IF (NEW.dbin_id is not NULL) THEN + SELECT count(*) into counter FROM samples + where id != NEW.id and code = NEW.code and samp_id_part_of = NEW.samp_id_part_of and dbin_id = NEW.dbin_id; + IF (counter > 0) THEN + RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because database instance sample with the same code and being the part of the same container already exists.', NEW.code; + END IF; + ELSIF (NEW.space_id is not NULL) THEN + SELECT count(*) into counter FROM samples + where id != NEW.id and code = NEW.code and samp_id_part_of = NEW.samp_id_part_of and space_id = NEW.space_id; + IF (counter > 0) THEN + RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because space sample with the same code and being the part of the same container already exists.', NEW.code; + END IF; + END IF; + END IF; + + RETURN NEW; +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER SAMPLE_CODE_UNIQUENESS_CHECK BEFORE INSERT OR UPDATE ON SAMPLES + FOR EACH ROW EXECUTE PROCEDURE SAMPLE_CODE_UNIQUENESS_CHECK(); + + +CREATE OR REPLACE FUNCTION SAMPLE_SUBCODE_UNIQUENESS_CHECK() RETURNS trigger AS $$ +DECLARE + counter INTEGER; + unique_subcode BOOLEAN_CHAR; +BEGIN + LOCK TABLE samples IN EXCLUSIVE MODE; + + SELECT is_subcode_unique into unique_subcode FROM sample_types WHERE id = NEW.saty_id; + + IF (unique_subcode) THEN + IF (NEW.dbin_id is not NULL) THEN + SELECT count(*) into counter FROM samples + where id != NEW.id and code = NEW.code and saty_id = NEW.saty_id and dbin_id = NEW.dbin_id; + IF (counter > 0) THEN + RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because database instance sample of the same type with the same subcode already exists.', NEW.code; + END IF; + ELSIF (NEW.space_id is not NULL) THEN + SELECT count(*) into counter FROM samples + where id != NEW.id and code = NEW.code and saty_id = NEW.saty_id and space_id = NEW.space_id; + IF (counter > 0) THEN + RAISE EXCEPTION 'Insert/Update of Sample (Code: %) failed because space sample of the same type with the same subcode already exists.', NEW.code; + END IF; + END IF; + END IF; + + RETURN NEW; +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER SAMPLE_SUBCODE_UNIQUENESS_CHECK BEFORE INSERT OR UPDATE ON SAMPLES + FOR EACH ROW EXECUTE PROCEDURE SAMPLE_SUBCODE_UNIQUENESS_CHECK(); + +------------------------------------------------------------------------------------ +-- Purpose: Create trigger MATERIAL/SAMPLE/EXPERIMENT/DATA_SET _PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK +-- It checks that if material property value is assigned to the entity, +-- then the material type is equal to the one described by property type. +------------------------------------------------------------------------------------ + +CREATE OR REPLACE FUNCTION MATERIAL_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from material_type_property_types etpt, property_types pt + where NEW.mtpt_id = etpt.id AND etpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER MATERIAL_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON material_properties + FOR EACH ROW EXECUTE PROCEDURE MATERIAL_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK(); + +CREATE OR REPLACE FUNCTION SAMPLE_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from sample_type_property_types etpt, property_types pt + where NEW.stpt_id = etpt.id AND etpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER SAMPLE_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON sample_properties + FOR EACH ROW EXECUTE PROCEDURE SAMPLE_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK(); + +CREATE OR REPLACE FUNCTION EXPERIMENT_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from experiment_type_property_types etpt, property_types pt + where NEW.etpt_id = etpt.id AND etpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER EXPERIMENT_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON experiment_properties + FOR EACH ROW EXECUTE PROCEDURE EXPERIMENT_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK(); + + -- data set +CREATE OR REPLACE FUNCTION DATA_SET_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK() RETURNS trigger AS $$ +DECLARE + v_type_id CODE; + v_type_id_prop CODE; +BEGIN + if NEW.mate_prop_id IS NOT NULL then + -- find material type id of the property type + select pt.maty_prop_id into v_type_id_prop + from data_set_type_property_types dstpt, property_types pt + where NEW.dstpt_id = dstpt.id AND dstpt.prty_id = pt.id; + + if v_type_id_prop IS NOT NULL then + -- find material type id of the material which consists the entity's property value + select entity.maty_id into v_type_id + from materials entity + where NEW.mate_prop_id = entity.id; + if v_type_id != v_type_id_prop then + RAISE EXCEPTION 'Insert/Update of property value referencing material (id: %) failed, as referenced material type is different than expected (id %, expected id: %).', + NEW.mate_prop_id, v_type_id, v_type_id_prop; + end if; + end if; + end if; + RETURN NEW; +END; +$$ LANGUAGE 'plpgsql'; + +CREATE TRIGGER DATA_SET_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK BEFORE INSERT OR UPDATE ON data_set_properties + FOR EACH ROW EXECUTE PROCEDURE DATA_SET_PROPERTY_WITH_MATERIAL_DATA_TYPE_CHECK(); \ No newline at end of file diff --git a/openbis/source/sql/postgresql/063/grants-063.sql b/openbis/source/sql/postgresql/063/grants-063.sql new file mode 100644 index 00000000000..a8d2f6799f3 --- /dev/null +++ b/openbis/source/sql/postgresql/063/grants-063.sql @@ -0,0 +1,83 @@ +-- Granting SELECT privilege to group OPENBIS_READONLY + +GRANT SELECT ON SEQUENCE attachment_content_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE attachment_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE code_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE controlled_vocabulary_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE cvte_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE data_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE data_set_property_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE data_set_relationship_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE data_set_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE data_store_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE DATA_STORE_SERVICES_ID_SEQ TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE data_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE database_instance_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE dstpt_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE etpt_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE event_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE experiment_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE experiment_property_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE experiment_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE file_format_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE space_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE invalidation_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE locator_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE material_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE material_property_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE material_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE mtpt_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE perm_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE person_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE project_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE property_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE role_assignment_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE sample_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE sample_property_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE sample_type_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE stpt_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE authorization_group_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE filter_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON SEQUENCE query_id_seq TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE attachment_contents TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE attachments TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE controlled_vocabularies TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE controlled_vocabulary_terms TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data_set_properties TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data_set_relationships TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data_set_type_property_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data_set_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data_stores TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE data_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE DATA_STORE_SERVICES TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE DATA_STORE_SERVICE_DATA_SET_TYPES TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE database_instances TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE database_version_logs TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE events TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE experiment_properties TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE experiment_type_property_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE experiment_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE experiments TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE external_data TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE file_format_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE spaces TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE invalidations TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE locator_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE material_properties TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE material_type_property_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE material_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE materials TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE persons TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE projects TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE property_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE role_assignments TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE sample_properties TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE sample_type_property_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE sample_types TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE samples TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE authorization_groups TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE authorization_group_persons TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE filters TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE queries TO GROUP OPENBIS_READONLY; +GRANT SELECT ON TABLE scripts TO GROUP OPENBIS_READONLY; diff --git a/openbis/source/sql/postgresql/migration/migration-062-063.sql b/openbis/source/sql/postgresql/migration/migration-062-063.sql new file mode 100644 index 00000000000..06d92f2a5c2 --- /dev/null +++ b/openbis/source/sql/postgresql/migration/migration-062-063.sql @@ -0,0 +1,13 @@ +-- Migration from 062 to 063 + +-- connect wells to experiments of their plates (screening specific) +UPDATE samples + SET expe_id = sc.expe_id + FROM samples sc, sample_types sct + WHERE sc.id = samples.samp_id_part_of + AND sct.id = sc.saty_id AND sct.code = 'PLATE' + +-- for testing: +-- SELECT s.id, s.expe_id, sc.expe_id FROM samples s, samples sc, sample_types sct +-- WHERE sc.id = s.samp_id_part_of +-- AND sct.id = sc.saty_id AND sct.code = 'PLATE' -- GitLab