diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/ImageLibraryInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/ImageLibraryInfo.java index b225c6862b5caf0c4dcf50933143c27a112b2a47..17561e6ff9d066946dca032a49d3e15657dbdbb8 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/ImageLibraryInfo.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/ImageLibraryInfo.java @@ -16,13 +16,17 @@ package ch.systemsx.cisd.openbis.dss.etl.dto; +import java.io.Serializable; + /** * Stores information about the library and its reader which should be used to read the image. * * @author Tomasz Pylak */ -public class ImageLibraryInfo +public class ImageLibraryInfo implements Serializable { + private static final long serialVersionUID = 1L; + // Which image library should be used to read the image? private final String name; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/RelativeImageFile.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/RelativeImageFile.java index 53df7a99792291a66040e4bc9896ec5b91a4e23d..051161ecac4297d0a966725576fd693a24ab78fc 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/RelativeImageFile.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/RelativeImageFile.java @@ -16,6 +16,8 @@ package ch.systemsx.cisd.openbis.dss.etl.dto; +import java.io.Serializable; + import ch.systemsx.cisd.common.utilities.AbstractHashable; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ImageFileInfo; import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ImageIdentifier; @@ -25,8 +27,10 @@ import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.ImageIdentifier; * * @author Tomasz Pylak */ -public class RelativeImageFile extends AbstractHashable +public class RelativeImageFile extends AbstractHashable implements Serializable { + private static final long serialVersionUID = 1L; + private final String imageRelativePath; private final String imageIDOrNull; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureDefinition.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureDefinition.java index 6eda73dd15f88690bf4ca6cad7181d651723a038..9e842f120498ffac5830ade38ce84e2199790f75 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureDefinition.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/FeatureDefinition.java @@ -16,6 +16,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.impl; +import java.io.Serializable; import java.util.ArrayList; import java.util.HashMap; import java.util.HashSet; @@ -39,8 +40,10 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.ImgFe * * @author Tomasz Pylak */ -public class FeatureDefinition implements IFeatureDefinition +public class FeatureDefinition implements IFeatureDefinition, Serializable { + private static final long serialVersionUID = 1L; + private final ImgFeatureDefDTO imgFeatureDefDTO; private final List<FeatureValuesMap> values; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java index 325040d27530dafb8f60bec6d9919bdd1fc9d9a3..1590263d7cbf9c10533d7972028bb6335ed74e9d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ImageDataSetStructure.java @@ -16,6 +16,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.impl; +import java.io.Serializable; import java.util.List; import ch.systemsx.cisd.common.collections.CollectionUtils; @@ -33,8 +34,11 @@ import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ToStringUtil; * * @author Tomasz Pylak */ -public class ImageDataSetStructure +public class ImageDataSetStructure implements Serializable { + + private static final long serialVersionUID = 1L; + private List<ImageFileInfo> images; private List<Channel> channels; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ThumbnailsInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ThumbnailsInfo.java index bd71a0d82d568351d78e388858c3dbdf0c5109d4..6c3c8c3f44466f29193d20c0b06c32f5cedb1a2d 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ThumbnailsInfo.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/impl/ThumbnailsInfo.java @@ -1,5 +1,6 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.impl; +import java.io.Serializable; import java.util.HashMap; import java.util.Map; import java.util.Set; @@ -15,10 +16,14 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess.Color * * @author Tomasz Pylak */ -public class ThumbnailsInfo +public class ThumbnailsInfo implements Serializable { - public static class PhysicalDatasetInfo + private static final long serialVersionUID = 1L; + + public static class PhysicalDatasetInfo implements Serializable { + private static final long serialVersionUID = 1L; + private final String rootPath; private int thumbnailsWidth; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/Channel.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/Channel.java index dbb5d610ccc02ce84545e4d22a054844f55154fe..c2a615f1a7da25cf99bec67b98929ca0ad468f9f 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/Channel.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/Channel.java @@ -1,6 +1,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1; import java.awt.Color; +import java.io.Serializable; import ch.systemsx.cisd.common.image.WavelengthColor; import ch.systemsx.cisd.common.utilities.AbstractHashable; @@ -14,8 +15,10 @@ import ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations.ImageTransfor * * @author Tomasz Pylak */ -public final class Channel extends AbstractHashable +public final class Channel extends AbstractHashable implements Serializable { + private static final long serialVersionUID = 1L; + private final String code; private final String label; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageFileInfo.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageFileInfo.java index 891ea1e259fa7e714bf32d66eefbaadf49cf7666..85c50c1d8932508bb9374fa8892be0b64ead5774 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageFileInfo.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageFileInfo.java @@ -1,5 +1,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1; +import java.io.Serializable; + import ch.systemsx.cisd.bds.hcs.Location; import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation; @@ -8,8 +10,10 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation; * * @author Tomasz Pylak */ -public final class ImageFileInfo +public final class ImageFileInfo implements Serializable { + private static final long serialVersionUID = 1L; + private WellLocation wellLocationOrNull; private Location tileLocation; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageIdentifier.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageIdentifier.java index 126b83ddbe32dce5e0eaa8c7f3274a3fa8a08b34..8699b2189ff1f2f424cc4418b45c808b4f657d0a 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageIdentifier.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageIdentifier.java @@ -16,6 +16,8 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1; +import java.io.Serializable; + import ch.systemsx.cisd.imagereaders.ImageID; /** @@ -25,8 +27,10 @@ import ch.systemsx.cisd.imagereaders.ImageID; * * @author Franz-Josef Elmer */ -public class ImageIdentifier implements Comparable<ImageIdentifier> +public class ImageIdentifier implements Comparable<ImageIdentifier>, Serializable { + private static final long serialVersionUID = 1L; + public static final ImageIdentifier NULL = new ImageIdentifier(0, 0, 0, 0); private final int seriesIndex; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageStorageConfiguraton.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageStorageConfiguraton.java index 2b964329b07a3f2b4746689d463b1ed45e5426d7..2945eea4553c113f1840f599caf90e3a690555aa 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageStorageConfiguraton.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ImageStorageConfiguraton.java @@ -16,6 +16,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1; +import java.io.Serializable; import java.util.ArrayList; import java.util.List; @@ -32,8 +33,10 @@ import ch.systemsx.cisd.openbis.dss.etl.dto.ImageLibraryInfo; * * @author Tomasz Pylak */ -public class ImageStorageConfiguraton extends AbstractHashable +public class ImageStorageConfiguraton extends AbstractHashable implements Serializable { + private static final long serialVersionUID = 1L; + /** Returns the default configuration. */ public static ImageStorageConfiguraton createDefault() { diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ThumbnailsStorageFormat.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ThumbnailsStorageFormat.java index feb1357bd5fdca0c6aab98c07fe4cdc08f082d94..df581ffa11dec9bafd9586d929befdc3ecbab699 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ThumbnailsStorageFormat.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/ThumbnailsStorageFormat.java @@ -18,6 +18,7 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1; import java.awt.image.BufferedImage; import java.io.OutputStream; +import java.io.Serializable; import java.util.Collections; import java.util.HashMap; import java.util.List; @@ -32,9 +33,11 @@ import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil; * * @author Tomasz Pylak */ -public class ThumbnailsStorageFormat extends AbstractHashable +public class ThumbnailsStorageFormat extends AbstractHashable implements Serializable { + private static final long serialVersionUID = 1L; + public enum FileFormat { PNG diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformation.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformation.java index 972b6bd27a555538f03379a739ee42cf87ff2130..6c67458d0e8c110a62ea232439eb1b3d9ec1559e 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformation.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/dto/api/v1/transformations/ImageTransformation.java @@ -16,6 +16,8 @@ package ch.systemsx.cisd.openbis.dss.etl.dto.api.v1.transformations; +import java.io.Serializable; + import ch.systemsx.cisd.base.image.IImageTransformerFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.CodeNormalizer; @@ -24,8 +26,11 @@ import ch.systemsx.cisd.openbis.generic.shared.basic.CodeNormalizer; * * @author Tomasz Pylak */ -public class ImageTransformation +public class ImageTransformation implements Serializable { + + private static final long serialVersionUID = 1L; + private String code; private String label; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureValuesMap.java b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureValuesMap.java index 103b8aaca69ce7073c3b09f51c68b25ca10e25a5..2074090f6bb7f2fbbc8097ef47063eb2dfe323eb 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureValuesMap.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/dss/etl/featurevector/FeatureValuesMap.java @@ -16,6 +16,7 @@ package ch.systemsx.cisd.openbis.dss.etl.featurevector; +import java.io.Serializable; import java.util.HashMap; import java.util.HashSet; import java.util.Map; @@ -31,8 +32,10 @@ import ch.systemsx.cisd.openbis.plugin.screening.shared.basic.dto.WellLocation; * * @author Tomasz Pylak */ -public class FeatureValuesMap +public class FeatureValuesMap implements Serializable { + private static final long serialVersionUID = 1L; + private final Map<WellLocation, String> valuesMap; private final Double depthOrNull; diff --git a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgFeatureDefDTO.java b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgFeatureDefDTO.java index 29831f4768fb848237787086f7b8bb8acb6e5a5c..b430b22985357cf88efe0e0585bedb6fa4f91c3b 100644 --- a/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgFeatureDefDTO.java +++ b/screening/source/java/ch/systemsx/cisd/openbis/plugin/screening/shared/imaging/dataaccess/ImgFeatureDefDTO.java @@ -16,6 +16,8 @@ package ch.systemsx.cisd.openbis.plugin.screening.shared.imaging.dataaccess; +import java.io.Serializable; + import net.lemnik.eodsql.ResultColumn; /** @@ -24,8 +26,10 @@ import net.lemnik.eodsql.ResultColumn; * * @author Chandrasekhar Ramakrishnan */ -public class ImgFeatureDefDTO extends AbstractImgIdentifiable +public class ImgFeatureDefDTO extends AbstractImgIdentifiable implements Serializable { + private static final long serialVersionUID = 1L; + @ResultColumn("LABEL") private String label;