From 12c968577d8625e1bf53bbf1a7d9ed4a372d0bfc Mon Sep 17 00:00:00 2001
From: buczekp <buczekp>
Date: Wed, 25 Nov 2009 08:42:11 +0000
Subject: [PATCH] [LMS-1264] added information about external sample name for
tracked data set
SVN: 13525
---
.../email/EntityTrackingEmailGenerator.java | 22 +++++++++++++++++++
1 file changed, 22 insertions(+)
diff --git a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/email/EntityTrackingEmailGenerator.java b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/email/EntityTrackingEmailGenerator.java
index 14d26904450..b6ecc853094 100644
--- a/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/email/EntityTrackingEmailGenerator.java
+++ b/deep_sequencing_unit/source/java/ch/ethz/bsse/cisd/dsu/tracking/email/EntityTrackingEmailGenerator.java
@@ -134,6 +134,8 @@ public class EntityTrackingEmailGenerator implements IEntityTrackingEmailGenerat
private static final String SUBSECTION_SEPARATOR_LINE =
createSeparatorLine(SUBSECTION_SEPARATOR_CHAR);
+ private final static String EXTERNAL_SAMPLE_NAME_PROPERTY_CODE = "EXTERNAL_SAMPLE_NAME";
+
private static final String PERMLINK_LABEL = "See details in openBIS";
private static final String GENARATED_CONTENT_TARGET = "{generated-content}";
@@ -242,10 +244,30 @@ public class EntityTrackingEmailGenerator implements IEntityTrackingEmailGenerat
appendAttribute(sb, "Sequencing sample", String.format("'%s'\n %s", sequencingSample
.getCode(), sequencingSample.getPermlink()));
+ // information about external sample name
+ appendAttribute(sb, "External sample name", tryGetSamplePropertyValue(sequencingSample,
+ EXTERNAL_SAMPLE_NAME_PROPERTY_CODE));
+
// data set properties
appendProperties(sb, dataSet.getProperties());
}
+ private static String tryGetSamplePropertyValue(Sample sequencingSample,
+ String externalSampleNamePropertyCode)
+ {
+ String result = null;
+ for (IEntityProperty property : sequencingSample.getProperties())
+ {
+ final String propertyCode = property.getPropertyType().getCode();
+ if (propertyCode.equals(EXTERNAL_SAMPLE_NAME_PROPERTY_CODE))
+ {
+ result = StringEscapeUtils.unescapeHtml(property.getValue());
+ break;
+ }
+ }
+ return result;
+ }
+
// NOTE: Information about properties assigned to entity type are not loaded.
// If it would be available we could append information about all properties assigned
// to entity type, not only about properties filled for specific entity. Additionally
--
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