diff --git a/datastore_server/dist/data/processing/.gitignore b/datastore_server/dist/data/processing/.gitignore new file mode 100644 index 0000000000000000000000000000000000000000..e69de29bb2d1d6434b8b29ae775ad8c2e48c5391 diff --git a/datastore_server/dist/etc/etlserver.conf b/datastore_server/dist/etc/datastore_server.conf similarity index 100% rename from datastore_server/dist/etc/etlserver.conf rename to datastore_server/dist/etc/datastore_server.conf diff --git a/datastore_server/dist/etc/openBIS.keystore b/datastore_server/dist/etc/openBIS.keystore index b727bd0fb777fddb3463c81cb56963a7541f7b45..3982a68319e9e1fed5ace51f72682d79e448eaa2 100644 Binary files a/datastore_server/dist/etc/openBIS.keystore and b/datastore_server/dist/etc/openBIS.keystore differ diff --git a/datastore_server/dist/etc/service.properties b/datastore_server/dist/etc/service.properties index ac44c7717d06af8cc5e1291c70ed2788193787ff..7925bffc5a4b832776223ac35654b4c3ec491351 100644 --- a/datastore_server/dist/etc/service.properties +++ b/datastore_server/dist/etc/service.properties @@ -1,6 +1,21 @@ # The root directory of the data store storeroot-dir = data/store +# Port +port = 8444 + +# Session timeout in minutes +session-timeout = 30 + +# Path to the keystore +keystore.path = etc/jetty-keystore + +# Password of the keystore +keystore.password = changeit + +# Key password of the keystore +keystore.key-password = changeit + # The check interval (in seconds) check-interval = 60 @@ -14,7 +29,7 @@ shutdown-timeout = 180 # If free disk space goes below value defined here, a notification email will be sent. # Value must be specified in kilobytes (1048576 = 1024 * 1024 = 1GB). If no high water mark is # specified or if value is negative, the system will not be watching. -highwater-mark = 1048576 +highwater-mark = -1 # If a data set is successfully registered it sends out an email to the registrator. # If this property is not specified, no email is sent to the registrator. This property @@ -22,13 +37,13 @@ highwater-mark = 1048576 notify-successful-registration = false # The URL of the openBIS server -server-url = https://localhost:8443/openbis +server-url = https://localhost:8443/openbis/openbis # The username to use when contacting the openBIS server username = etlserver # The password to use when contacting the openBIS server -password = <change this> +password = etlserver # SMTP properties (must start with 'mail' to be considered). # mail.smtp.host = localhost @@ -64,7 +79,7 @@ default-prefix-for-absolute-paths = processors = DATA_ACQUISITION processor.DATA_ACQUISITION.prefix-for-absolute-paths = ${default-prefix-for-absolute-paths} -processor.DATA_ACQUISITION.prefix-for-relative-paths = targets/processing +processor.DATA_ACQUISITION.prefix-for-relative-paths = data/processing processor.DATA_ACQUISITION.parameters-file = parameters processor.DATA_ACQUISITION.data-set-code-prefix-glue = ${data-set-file-name-entity-separator} processor.DATA_ACQUISITION.finished-file-template = .MARKER_is_finished_{0} @@ -79,7 +94,8 @@ inputs=main-thread # --------------------------------------------------------------------------- # 'main-thread' thread configuration # --------------------------------------------------------------------------- - +# The group +main-thread.group-code = TEST # The directory to watch for incoming data. main-thread.incoming-dir = data/incoming # The group the samples extracted by this thread belong to. If commented out or empty, then samples @@ -87,7 +103,6 @@ main-thread.incoming-dir = data/incoming # main-thread.group-code = <change this> # ---------------- Plugin properties - # The extractor class to use for code extraction main-thread.data-set-info-extractor = ch.systemsx.cisd.etlserver.DefaultDataSetInfoExtractor # Separator used to extract the barcode in the data set file name @@ -107,4 +122,3 @@ main-thread.storage-processor = ch.systemsx.cisd.etlserver.DefaultStorageProcess # main-thread.storage-processor.sampleTypeCode = CELL_PLATE # main-thread.storage-processor.sampleTypeDescription = Screening Plate # main-thread.storage-processor.format = UNKNOWN V1.0 -