From 064d0b6877c170c4b88d6eac268a6ed834871e12 Mon Sep 17 00:00:00 2001 From: jakubs <jakubs> Date: Mon, 22 Oct 2012 09:43:46 +0000 Subject: [PATCH] SP-334 SWE-14 rename common package to openbis.common in openbis-common project SVN: 27282 --- .../DataSetRegistrationAlgorithm.java | 2 +- .../etlserver/api/v1/PutDataSetService.java | 4 ++-- .../etlserver/hdf5/HDF5StorageProcessor.java | 4 ++-- .../DatabaseBasedDataSetPathsInfoFeeder.java | 4 ++-- .../systemsx/cisd/etlserver/path/PathInfo.java | 2 +- ...athInfoDatabaseChecksumCalculationTask.java | 2 +- .../path/PathInfoDatabaseFeedingTask.java | 12 ++++++------ .../Hdf5CompressingPostRegistrationTask.java | 8 ++++---- .../api/v1/impl/ConversionUtils.java | 2 +- .../dss/client/api/v1/impl/DssComponent.java | 8 ++++---- .../api/v1/impl/OpenbisServiceFacade.java | 2 +- .../openbis/dss/generic/DataStoreServer.java | 2 +- .../server/AbstractDatasetDownloadServlet.java | 2 +- .../generic/server/AbstractDssServiceRpc.java | 4 ++-- .../dss/generic/server/AutoResolveUtils.java | 4 ++-- .../dss/generic/server/DataStoreServer.java | 6 +++--- .../dss/generic/server/DataStoreService.java | 8 ++++---- .../generic/server/DataStoreServiceLogger.java | 2 +- .../generic/server/DatasetDownloadServlet.java | 6 +++--- .../server/DatasetImageOverviewServlet.java | 2 +- .../server/EncapsulatedOpenBISService.java | 2 +- .../server/IDatasetImageOverviewPlugin.java | 2 +- .../dss/generic/server/RenderingContext.java | 4 ++-- .../ServiceConversationClientManager.java | 2 +- .../ServiceConversationServerManager.java | 4 ++-- .../dss/generic/server/UploadingCommand.java | 6 +++--- .../cisd/openbis/dss/generic/server/Utils.java | 2 +- .../server/api/v1/DssServiceRpcGeneric.java | 8 ++++---- .../api/v1/DssServiceRpcGenericLogger.java | 2 +- .../dss/generic/server/ftp/FtpFileFactory.java | 6 +++--- .../ftp/resolver/FtpFileEvaluationContext.java | 4 ++-- .../server/ftp/resolver/FtpFileImpl.java | 8 ++++---- .../TemplateBasedDataSetResourceResolver.java | 6 +++--- .../plugins/demo/DemoOverviewPlugin.java | 2 +- .../plugins/demo/DemoProcessingPlugin.java | 2 +- .../plugins/demo/DemoReportingPlugin.java | 2 +- .../plugins/jython/JythonBasedPluginUtils.java | 2 +- .../jython/PluginScriptRunnerFactory.java | 2 +- .../server/plugins/jython/api/IDataSet.java | 2 +- .../standard/AbstractDatastorePlugin.java | 4 ++-- ...InfoDBConsistencyCheckProcessingPlugin.java | 8 ++++---- .../server/plugins/standard/RsyncArchiver.java | 6 +++--- .../standard/TSVViewReportingPlugin.java | 4 ++-- .../HierarchicalContentChecksumProvider.java | 6 ++---- .../shared/HierarchicalContentProvider.java | 4 ++-- .../HierarchicalContentTraverseUtil.java | 6 +++--- .../IHierarchicalContentNodeVisitor.java | 2 +- .../shared/IHierarchicalContentProvider.java | 2 +- .../internal/v1/IDataSetContentProvider.java | 2 +- .../api/v1/HierarchicalFileInfoDssBuilder.java | 2 +- ...hInfoDBAwareHierarchicalContentFactory.java | 6 +++--- ...thInfoDBOnlyHierarchicalContentFactory.java | 6 +++--- ...thInfoProviderBasedHierarchicalContent.java | 8 ++++---- .../generic/shared/dto/DataSetInformation.java | 2 +- .../dss/generic/shared/utils/ImageUtil.java | 4 ++-- .../PutDataSetTopLevelDataSetHandlerTest.java | 6 +++--- .../hdf5/AbstractHDF5StorageProcessorTest.java | 8 ++++---- ...atabaseBasedDataSetPathsInfoFeederTest.java | 2 +- ...nfoDatabaseChecksumCalculationTaskTest.java | 4 ++-- .../path/PathInfoDatabaseFeedingTaskTest.java | 6 +++--- .../cisd/etlserver/path/PathInfoTest.java | 6 +++--- .../JythonTopLevelDataSetRegistratorTest.java | 2 +- .../systemtests/ServiceConversationTest.java | 18 +++++++++--------- .../client/api/v1/impl/DssComponentTest.java | 2 +- .../generic/server/AutoResolveUtilsTest.java | 4 ++-- .../server/DatasetDownloadServletTest.java | 4 ++-- .../generic/server/DssServiceRpcV1Test.java | 10 +++++----- .../generic/server/UploadingCommandTest.java | 4 ++-- .../api/v1/DssServiceRpcGenericTest.java | 4 ++-- ...mplateBasedDataSetResourceResolverTest.java | 6 +++--- ...dAggregationServiceReportingPluginTest.java | 4 ++-- .../JythonBasedProcessingPluginTest.java | 2 +- .../jython/JythonBasedReportingPluginTest.java | 2 +- ...DBConsistencyCheckProcessingPluginTest.java | 4 ++-- .../plugins/standard/RsyncArchiverTest.java | 4 ++-- .../standard/TSVViewReportingPluginTest.java | 4 ++-- .../tasks/PluginTaskParametersTest.java | 4 ++-- .../HierarchicalContentProviderTest.java | 6 +++--- ...foProviderBasedHierarchicalContentTest.java | 8 ++++---- .../generic/shared/utils/ImageUtilTest.java | 4 ++-- 80 files changed, 176 insertions(+), 178 deletions(-) diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java index 03257b95cda..96a356b899c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java @@ -38,11 +38,11 @@ import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.time.DateFormatThreadLocal; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.IStorageProcessorTransaction; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.StorageProcessorTransactionParameters; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.UnstoreDataAction; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java index c1842779069..55ffdbc6292 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java @@ -31,8 +31,6 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.ByteArrayBasedContentNode; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.etlserver.DataStrategyStore; @@ -41,6 +39,8 @@ import ch.systemsx.cisd.etlserver.Parameters; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.validation.DataSetValidator; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; +import ch.systemsx.cisd.openbis.common.io.ByteArrayBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; import ch.systemsx.cisd.openbis.dss.generic.shared.Constants; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java index 1dd49eccc47..fe550acae14 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java @@ -20,13 +20,13 @@ import java.io.File; import java.util.Properties; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.hdf5.HDF5Container; -import ch.systemsx.cisd.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.etlserver.AbstractStorageProcessor; import ch.systemsx.cisd.etlserver.AbstractStorageProcessorTransaction; import ch.systemsx.cisd.etlserver.ITypeExtractor; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; +import ch.systemsx.cisd.openbis.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; /** * Storage processor that keeps data in an HDF5 container on the file system. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java index dc9589d14f4..c6b826f46d7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java @@ -21,9 +21,9 @@ import java.util.ArrayList; import java.util.List; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.etlserver.IDataSetPathsInfoFeeder; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; /** * Data set paths info feeder feeding a data base. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java index 2002d304b64..29c4f213fba 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java @@ -22,7 +22,7 @@ import java.util.Comparator; import java.util.Date; import java.util.List; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Immutable class with path informations about a {@link IHierarchicalContentNode} and its descendants. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java index 9260a0ab4dd..3c222082054 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java @@ -29,12 +29,12 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.maintenance.IMaintenanceTask; import ch.systemsx.cisd.common.utilities.ITimeProvider; import ch.systemsx.cisd.common.utilities.SystemTimeProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java index aa21ca7fd6e..a692871c011 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java @@ -25,8 +25,6 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.maintenance.IMaintenanceTask; @@ -35,6 +33,8 @@ import ch.systemsx.cisd.etlserver.postregistration.ICleanupTask; import ch.systemsx.cisd.etlserver.postregistration.IPostRegistrationTask; import ch.systemsx.cisd.etlserver.postregistration.IPostRegistrationTaskExecutor; import ch.systemsx.cisd.etlserver.postregistration.NoCleanupTask; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; @@ -53,7 +53,7 @@ public class PathInfoDatabaseFeedingTask implements IMaintenanceTask, IPostRegis { private static final Logger operationLog = LogFactory.getLogger(LogCategory.OPERATION, PathInfoDatabaseFeedingTask.class); - + static final String COMPUTE_CHECKSUM_KEY = "compute-checksum"; private static IPathsInfoDAO createDAO() @@ -78,7 +78,7 @@ public class PathInfoDatabaseFeedingTask implements IMaintenanceTask, IPostRegis private IPathsInfoDAO dao; private IHierarchicalContentFactory hierarchicalContentFactory; // filesystem based - + private boolean computeChecksum; public PathInfoDatabaseFeedingTask() @@ -174,8 +174,8 @@ public class PathInfoDatabaseFeedingTask implements IMaintenanceTask, IPostRegis File dataSetRoot = directoryProvider.getDataSetDirectory(dataSet); if (dataSetRoot.exists() == false) { - operationLog.error("Root directory of data set " + dataSetCode + " does not exists: " - + dataSetRoot); + operationLog.error("Root directory of data set " + dataSetCode + + " does not exists: " + dataSetRoot); shareIdManager.releaseLocks(); return; } diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java index 7a34cccd1bd..0fb16ed115e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java @@ -32,14 +32,14 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.hdf5.HDF5Container; -import ch.systemsx.cisd.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; +import ch.systemsx.cisd.openbis.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java index e66a0a2146c..39eed27b987 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java @@ -21,8 +21,8 @@ import java.util.List; import java.util.Set; import ch.systemsx.cisd.common.exception.NotImplementedException; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Code; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java index 1f381c32cdd..ed5a94562e1 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java @@ -43,14 +43,14 @@ import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.api.IRpcServiceFactory; import ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.exception.AuthorizationFailureException; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java index a3a962d734f..2b026817a8f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java @@ -25,13 +25,13 @@ import java.util.List; import java.util.Map; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.api.retry.RetryCaller; import ch.systemsx.cisd.common.api.retry.RetryProxyFactory; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.InvalidSessionException; import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet; import ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java index 995dec9db02..d68727f69bc 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java @@ -26,8 +26,8 @@ import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.properties.ExtendedProperties; -import ch.systemsx.cisd.common.spring.SpringEoDSQLExceptionTranslator; import ch.systemsx.cisd.etlserver.ETLDaemon; +import ch.systemsx.cisd.openbis.common.spring.SpringEoDSQLExceptionTranslator; import ch.systemsx.cisd.openbis.dss.BuildAndEnvironmentInfo; import ch.systemsx.cisd.openbis.dss.generic.server.CommandQueueLister; import ch.systemsx.cisd.openbis.dss.generic.shared.QueueingDataSetStatusUpdaterService; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java index 53e4d33f388..184a2724560 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java @@ -39,9 +39,9 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java index 5eaeed073db..316500c96f8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java @@ -21,8 +21,8 @@ import java.io.InputStream; import org.springframework.beans.factory.annotation.Autowired; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.spring.AbstractServiceWithLogger; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.spring.AbstractServiceWithLogger; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java index 01521a71d61..6ba09943720 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java @@ -27,8 +27,8 @@ import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Utility class defining methods related to auto resolving data sets. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java index 443d044d253..dc6ef592b70 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java @@ -57,9 +57,6 @@ import com.marathon.util.spring.StreamSupportingHttpInvokerServiceExporter; import ch.systemsx.cisd.common.api.IRpcServiceNameServer; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.api.server.RpcServiceNameServer; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationClientManagerRemote; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationServerManagerRemote; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; @@ -67,6 +64,9 @@ import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.resource.IInitializable; +import ch.systemsx.cisd.openbis.common.api.server.RpcServiceNameServer; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationClientManagerRemote; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationServerManagerRemote; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DssSessionAuthorizationHolder; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java index 3b693acbcf5..0c3e86726f8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java @@ -30,8 +30,6 @@ import org.springframework.beans.factory.InitializingBean; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; -import ch.systemsx.cisd.common.conversation.context.ServiceConversationsThreadContext; -import ch.systemsx.cisd.common.conversation.progress.IServiceConversationProgressListener; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; import ch.systemsx.cisd.common.exception.InvalidSessionException; @@ -39,9 +37,11 @@ import ch.systemsx.cisd.common.filesystem.QueueingPathRemoverService; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.common.mail.MailClientParameters; -import ch.systemsx.cisd.common.spring.AbstractServiceWithLogger; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.etlserver.api.v1.PutDataSetService; +import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; +import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; +import ch.systemsx.cisd.openbis.common.spring.AbstractServiceWithLogger; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.ArchiverPluginFactory; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IPluginTaskInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java index 87d60f68e17..d96e6d5ab36 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java @@ -24,7 +24,7 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; import ch.systemsx.cisd.common.resource.IInitializable; import ch.systemsx.cisd.common.serviceconversation.ServiceMessage; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.shared.IDataStoreService; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CustomImportFile; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java index 563fb3ead2b..0339172baa1 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java @@ -36,9 +36,9 @@ import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size; import ch.systemsx.cisd.openbis.generic.shared.util.HttpRequestUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java index 8c229b5cf60..931862ef0a0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java @@ -25,7 +25,7 @@ import javax.servlet.http.HttpServletResponse; import javax.servlet.http.HttpSession; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.DatasetImageOverviewUtilities; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java index 5e9533589e0..aaa4440c848 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java @@ -24,10 +24,10 @@ import org.apache.commons.lang.time.DateUtils; import org.apache.log4j.Logger; import org.springframework.beans.factory.FactoryBean; -import ch.systemsx.cisd.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java index 6d861b2c959..4e000dd8c7c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java index 0284be0fa78..e3451b38002 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import org.apache.commons.lang.builder.ToStringBuilder; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; final class RenderingContext { diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java index c2d8b6fa915..5a43cad3c63 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.openbis.dss.generic.server; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationClientManager; import ch.systemsx.cisd.common.spring.PropertyPlaceholderUtils; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationClientManager; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationApplicationServerUrl; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationDataStoreClientId; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java index 95b9e407d5a..e592152a3f5 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java @@ -18,9 +18,9 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import org.springframework.beans.factory.InitializingBean; -import ch.systemsx.cisd.common.conversation.client.ServiceConversationClientDetails; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationServerManager; import ch.systemsx.cisd.common.spring.PropertyPlaceholderUtils; +import ch.systemsx.cisd.openbis.common.conversation.client.ServiceConversationClientDetails; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationServerManager; import ch.systemsx.cisd.openbis.generic.shared.IDataStoreService; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationApplicationServerClientId; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationApplicationServerUrl; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java index 1f557c08d8b..4da24df40dd 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java @@ -40,15 +40,15 @@ import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXUploader; import ch.systemsx.cisd.cifex.rpc.client.gui.IProgressListener; import ch.systemsx.cisd.cifex.shared.basic.Constants; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.common.mail.MailClientParameters; import ch.systemsx.cisd.common.security.TokenGenerator; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java index b7b35905d1b..b955dc3dc9d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java @@ -20,7 +20,7 @@ import javax.activation.MimetypesFileTypeMap; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java index 429e0bc4075..b5701825a85 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java @@ -32,13 +32,13 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.etlserver.api.v1.PutDataSetService; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractDssServiceRpc; import ch.systemsx.cisd.openbis.dss.generic.server.IStreamRepository; import ch.systemsx.cisd.openbis.dss.generic.server.SessionWorkspaceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java index 3447568a0cf..d74998e699b 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java @@ -20,7 +20,7 @@ import java.io.File; import java.io.InputStream; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DataSetAccessGuard; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssServiceRpcGenericInternal; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java index aa8f4ed3822..94bae15ea0f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java @@ -20,9 +20,9 @@ import java.io.File; import org.apache.ftpserver.ftplet.FtpFile; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentNodeFilter; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentNodeFilter; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.resolver.FtpFileImpl; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java index e112df1a69b..20aa978f3fc 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java @@ -25,8 +25,8 @@ import java.util.Map; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java index 4f634a1699e..61496d8fc1c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java @@ -23,10 +23,10 @@ import java.util.List; import org.apache.ftpserver.ftplet.FtpFile; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentNodeFilter; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentNodeFilter; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpConstants; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpFileFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java index 095863d1f8a..5ea7717addb 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java @@ -32,12 +32,12 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentNodeFilter; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.string.Template; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentNodeFilter; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpConstants; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpFileFactory; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpPathResolverContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java index 4cbf44bd952..26b797d5a4c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java @@ -27,8 +27,8 @@ import java.util.Properties; import javax.imageio.ImageIO; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.IDatasetImageOverviewPlugin; import ch.systemsx.cisd.openbis.dss.generic.server.ResponseContentStream; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java index 104ce5081a8..da07d21504c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java @@ -22,9 +22,9 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.HierarchicalContentTraverseUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java index fe5d781a614..0628ec71f61 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java @@ -22,7 +22,7 @@ import java.util.Date; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractTableModelReportingPlugin; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.HierarchicalContentTraverseUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java index ac452ae6fb8..b3218854549 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java index 71b90bfb043..a176de1e19f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java @@ -25,13 +25,13 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.jython.evaluator.Evaluator; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IMailService; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java index 9710d2c8299..a723d1f7de9 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; /** * Abstraction of a data set with both content and metadata. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java index 777ac732910..5c2aa2ff9d3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java @@ -24,10 +24,10 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java index 61534c39122..539814b76ee 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java @@ -32,12 +32,12 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.MailService; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IEmailSender; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java index d07867a32b5..a5feb8361a7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java @@ -28,10 +28,10 @@ import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.filesystem.BooleanStatus; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ArchiverTaskContext; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java index 32f6568c4c6..372d0c99850 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java @@ -21,9 +21,9 @@ import java.util.List; import java.util.Properties; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.AutoResolveUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java index 3b75976744e..0467a2cfb0e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java @@ -18,10 +18,8 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.io.IOException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; -import ch.systemsx.cisd.openbis.dss.generic.shared.IChecksumProvider; -import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Checksum provider that uses a hierarchical content provider to get checksums. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java index 345724bd5b3..7c5359bafb7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java @@ -24,10 +24,10 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.content.PathInfoDBAwareHierarchicalContentFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalDataLocationNode; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java index 43d2fbbb635..4841520a515 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java @@ -18,9 +18,9 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.util.List; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * A utility class to abstract traversing of {@link IHierarchicalContentNode}-s. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java index ab8ef46bfd3..e9e6e404ca7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * A visitor for {@link IHierarchicalContentNode}-s. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java index 4933f4feb38..2a6d2fe9877 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.io.File; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java index 1e35f645b2e..4c0fb724742 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; /** * Interface for classes providing {@link IHierarchicalContent} of a data set. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java index 9855b9a9781..5104ff7ad30 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1; import java.io.IOException; import java.util.ArrayList; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Helper Class for creating FileInfoDss objects based on file system abstraction. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java index 5ce40771bc2..19d7e823542 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java @@ -6,11 +6,11 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java index cce3740d054..32e00636863 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java @@ -20,9 +20,9 @@ import java.io.File; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java index 1a78fc926fc..8d5d2ba8cca 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java @@ -29,11 +29,11 @@ import ch.systemsx.cisd.base.io.RandomAccessFileImpl; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.AbstractHierarchicalContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.HDF5ContainerBasedHierarchicalContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.AbstractHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HDF5ContainerBasedHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java index 86ce6cdc1c7..8a980484dc5 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java @@ -24,7 +24,7 @@ import java.util.List; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.common.time.DateFormatThreadLocal; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.SpeedUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ToStringUtil; import ch.systemsx.cisd.openbis.generic.shared.IServer; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java index a68f7dea7ee..c70f19fbbc3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java @@ -49,8 +49,6 @@ import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.image.IntensityRescaling; import ch.systemsx.cisd.common.image.IntensityRescaling.GrayscalePixels; import ch.systemsx.cisd.common.image.IntensityRescaling.Levels; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.imagereaders.IImageReader; @@ -58,6 +56,8 @@ import ch.systemsx.cisd.imagereaders.IReadParams; import ch.systemsx.cisd.imagereaders.ImageID; import ch.systemsx.cisd.imagereaders.ImageReaderConstants; import ch.systemsx.cisd.imagereaders.ImageReaderFactory; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Utility function on images. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java index aa825b912d4..618debef77e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java @@ -37,9 +37,6 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.ByteArrayBasedContentNode; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; @@ -52,6 +49,9 @@ import ch.systemsx.cisd.etlserver.ThreadParameters; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransactionTest.MockStorageProcessor; import ch.systemsx.cisd.etlserver.registrator.recovery.DataSetStorageRecoveryManager; +import ch.systemsx.cisd.openbis.common.io.ByteArrayBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java index 6c6be735e45..673e081a1cd 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java @@ -21,12 +21,12 @@ import java.util.Properties; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.hdf5.FileToHDF5DuplicationVerifier; -import ch.systemsx.cisd.common.hdf5.HDF5Container; -import ch.systemsx.cisd.common.hdf5.HDF5Container.IHDF5ReaderClient; -import ch.systemsx.cisd.common.hdf5.IHDF5ContainerReader; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.IStorageProcessorTransaction; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.StorageProcessorTransactionParameters; +import ch.systemsx.cisd.openbis.common.hdf5.FileToHDF5DuplicationVerifier; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container.IHDF5ReaderClient; +import ch.systemsx.cisd.openbis.common.hdf5.IHDF5ContainerReader; /** * Tests for {@link HDF5StorageProcessor}. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java index 736e509f36a..f285d7c5bef 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java @@ -30,8 +30,8 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; import ch.systemsx.cisd.etlserver.IDataSetPathsInfoFeeder; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; /** * @author Franz-Josef Elmer diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java index 86fe0673637..e08d32ab5f3 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java @@ -28,10 +28,10 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.utilities.ITimeProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; /** diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java index 616c801c9a9..725104b6784 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java @@ -32,10 +32,10 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogInitializer; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java index 694e917b929..b0ed06e5d6d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java @@ -24,9 +24,9 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java index cd8979bb46d..5c0ffebb0d2 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java @@ -41,7 +41,6 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.eodsql.MockDataSet; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.NotImplementedException; import ch.systemsx.cisd.common.exception.UserFailureException; @@ -55,6 +54,7 @@ import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.UnstoreDataAction; import ch.systemsx.cisd.etlserver.ThreadParameters; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; +import ch.systemsx.cisd.openbis.common.eodsql.MockDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java index dcda1f090c5..be33ade2620 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java @@ -48,17 +48,17 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; import ch.systemsx.cisd.common.concurrent.MessageChannel; -import ch.systemsx.cisd.common.conversation.annotation.Conversational; -import ch.systemsx.cisd.common.conversation.annotation.Progress; -import ch.systemsx.cisd.common.conversation.client.ServiceConversationClientDetails; -import ch.systemsx.cisd.common.conversation.context.ServiceConversationsThreadContext; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationClientManager; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationServerManager; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationClientManagerRemote; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationServerManagerRemote; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.serviceconversation.client.ServiceExecutionException; -import ch.systemsx.cisd.common.spring.WaitAction; +import ch.systemsx.cisd.openbis.common.conversation.annotation.Conversational; +import ch.systemsx.cisd.openbis.common.conversation.annotation.Progress; +import ch.systemsx.cisd.openbis.common.conversation.client.ServiceConversationClientDetails; +import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationClientManager; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationServerManager; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationClientManagerRemote; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationServerManagerRemote; +import ch.systemsx.cisd.openbis.common.spring.WaitAction; @Test public class ServiceConversationTest diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java index c6fa92950c9..9db80015336 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java @@ -52,7 +52,7 @@ import ch.systemsx.cisd.common.exception.AuthorizationFailureException; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractDssServiceRpc; import ch.systemsx.cisd.openbis.dss.generic.server.DatasetSessionAuthorizer; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java index f0d6a59d545..d0ea377b35d 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java @@ -30,9 +30,9 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogInitializer; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Test cases for {@link AutoResolveUtils}. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java index d3a6a1e0346..0999cceacf9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java @@ -51,10 +51,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.test.AssertionUtil; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.MockDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.HierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java index d88f0aa5c7d..9051f5b3892 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java @@ -42,11 +42,6 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.QueueingPathRemoverService; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; @@ -61,6 +56,11 @@ import ch.systemsx.cisd.etlserver.api.v1.TestDataSetTypeToTopLevelRegistratorMap import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransactionTest.MockStorageProcessor; import ch.systemsx.cisd.etlserver.registrator.recovery.DataSetStorageRecoveryManager; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.DssServiceRpcAuthorizationAdvisor.DssServiceRpcAuthorizationMethodInterceptor; import ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.MockDataSetDirectoryProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java index efd0745a6ae..801cbefedf7 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java @@ -49,10 +49,10 @@ import ch.systemsx.cisd.cifex.rpc.client.gui.IProgressListener; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.AuthorizationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.mail.MailClientParameters; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java index e4c4366df2d..d1cf39c44b9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java @@ -30,8 +30,8 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.DatasetSessionAuthorizer; import ch.systemsx.cisd.openbis.dss.generic.server.DssServiceRpcAuthorizationAdvisor; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IPluginTaskInfoProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java index 8234917d5cb..2cac5be3df5 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java @@ -40,11 +40,11 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.test.TrackingMockery; import ch.systemsx.cisd.common.utilities.ITimeProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.Cache; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpConstants; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpPathResolverContext; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java index 90a1be99553..241967c522f 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java @@ -32,11 +32,11 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetImmutable; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IReportingPluginTask; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java index 7a3e51fa049..c6ed1fdc3d5 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java @@ -27,10 +27,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java index 8b9a7aa49f8..ffcf7d91455 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java @@ -29,10 +29,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java index d007953ac73..bb5e9734a5f 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java @@ -30,10 +30,10 @@ import org.testng.annotations.DataProvider; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.mail.IMailClient; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java index 19003d30ae3..ea44393e7a5 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java @@ -45,10 +45,10 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.logging.LogInitializer; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ArchiverTaskContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IConfigProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDeleter; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java index 4829f8dd0dc..8af4a09e3b3 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java @@ -31,8 +31,8 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java index 833b0b4661f..1783cc98083 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java @@ -38,10 +38,10 @@ import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.IServletPropertiesManager; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.demo.DemoProcessingPlugin; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.demo.DemoReportingPlugin; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java index 4795aa98c02..f0bfa43365e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java @@ -28,10 +28,10 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DatasetLocation; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DatasetLocationNode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java index 08b2a1a9536..9e3a22af732 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java @@ -30,10 +30,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentTest; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentTest; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java index 6e4c97203f6..d0952b083f7 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java @@ -30,10 +30,10 @@ import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile; import ch.systemsx.cisd.base.io.IRandomAccessFile; import ch.systemsx.cisd.base.io.RandomAccessFileImpl; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.imagereaders.ImageReaderConstants; import ch.systemsx.cisd.imagereaders.ImageReadersTestHelper; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * @author Franz-Josef Elmer -- GitLab