diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java index 03257b95cda67fa8070e08dd67d25a525e29a078..96a356b899c16e08ddc157abdd258fa6cc10cca6 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/DataSetRegistrationAlgorithm.java @@ -38,11 +38,11 @@ import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.time.DateFormatThreadLocal; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.IStorageProcessorTransaction; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.StorageProcessorTransactionParameters; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.UnstoreDataAction; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DataSetType; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java index c18427790697135f35228f683d82b38a774e87de..55ffdbc6292fa31254ac21046bdadc96252f93f9 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetService.java @@ -31,8 +31,6 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.ByteArrayBasedContentNode; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.etlserver.DataStrategyStore; @@ -41,6 +39,8 @@ import ch.systemsx.cisd.etlserver.Parameters; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.validation.DataSetValidator; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; +import ch.systemsx.cisd.openbis.common.io.ByteArrayBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; import ch.systemsx.cisd.openbis.dss.generic.shared.Constants; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java index 1dd49eccc4712e63b6daef15cf3798fc66b1e2f9..fe550acae14b0c80c50ea60ad4ba89bd10267296 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/hdf5/HDF5StorageProcessor.java @@ -20,13 +20,13 @@ import java.io.File; import java.util.Properties; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.hdf5.HDF5Container; -import ch.systemsx.cisd.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.properties.PropertyUtils; import ch.systemsx.cisd.etlserver.AbstractStorageProcessor; import ch.systemsx.cisd.etlserver.AbstractStorageProcessorTransaction; import ch.systemsx.cisd.etlserver.ITypeExtractor; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; +import ch.systemsx.cisd.openbis.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; /** * Storage processor that keeps data in an HDF5 container on the file system. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java index dc9589d14f4289e35f14f94306fcb4359f0e1ff2..c6b826f46d714b044bfa5aa638ee42e868747f76 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeeder.java @@ -21,9 +21,9 @@ import java.util.ArrayList; import java.util.List; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.etlserver.IDataSetPathsInfoFeeder; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; /** * Data set paths info feeder feeding a data base. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java index 2002d304b648231c5925ae14e1ae5770b19027aa..29c4f213fbacf1f4815ab996827eb61b2c89200d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfo.java @@ -22,7 +22,7 @@ import java.util.Comparator; import java.util.Date; import java.util.List; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Immutable class with path informations about a {@link IHierarchicalContentNode} and its descendants. diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java index 9260a0ab4dda956d8e2be70f22f561a9f803cffd..3c222082054baaeffc9e9f20d4a7b23883255301 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTask.java @@ -29,12 +29,12 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.maintenance.IMaintenanceTask; import ch.systemsx.cisd.common.utilities.ITimeProvider; import ch.systemsx.cisd.common.utilities.SystemTimeProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.PathInfoDataSourceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java index aa21ca7fd6e47ae74ad10183dd12fc9f13d14224..a692871c0115a81069141929a53244f86ad7d96f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTask.java @@ -25,8 +25,6 @@ import net.lemnik.eodsql.QueryTool; import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.maintenance.IMaintenanceTask; @@ -35,6 +33,8 @@ import ch.systemsx.cisd.etlserver.postregistration.ICleanupTask; import ch.systemsx.cisd.etlserver.postregistration.IPostRegistrationTask; import ch.systemsx.cisd.etlserver.postregistration.IPostRegistrationTaskExecutor; import ch.systemsx.cisd.etlserver.postregistration.NoCleanupTask; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; @@ -53,7 +53,7 @@ public class PathInfoDatabaseFeedingTask implements IMaintenanceTask, IPostRegis { private static final Logger operationLog = LogFactory.getLogger(LogCategory.OPERATION, PathInfoDatabaseFeedingTask.class); - + static final String COMPUTE_CHECKSUM_KEY = "compute-checksum"; private static IPathsInfoDAO createDAO() @@ -78,7 +78,7 @@ public class PathInfoDatabaseFeedingTask implements IMaintenanceTask, IPostRegis private IPathsInfoDAO dao; private IHierarchicalContentFactory hierarchicalContentFactory; // filesystem based - + private boolean computeChecksum; public PathInfoDatabaseFeedingTask() @@ -174,8 +174,8 @@ public class PathInfoDatabaseFeedingTask implements IMaintenanceTask, IPostRegis File dataSetRoot = directoryProvider.getDataSetDirectory(dataSet); if (dataSetRoot.exists() == false) { - operationLog.error("Root directory of data set " + dataSetCode + " does not exists: " - + dataSetRoot); + operationLog.error("Root directory of data set " + dataSetCode + + " does not exists: " + dataSetRoot); shareIdManager.releaseLocks(); return; } diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java index 7a34cccd1bd9f65f934a7d0b738b6525c8b3d348..0fb16ed115e02596cb34f664f1f7198f20b5d24f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/postregistration/Hdf5CompressingPostRegistrationTask.java @@ -32,14 +32,14 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.hdf5.HDF5Container; -import ch.systemsx.cisd.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.ISimpleLogger; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; +import ch.systemsx.cisd.openbis.common.hdf5.HierarchicalStructureDuplicatorFileToHDF5; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java index e66a0a2146c160d6d6e1c94f43d6203a753706df..39eed27b9878602b79181b4d68ca6c27d6efad86 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/etlserver/registrator/api/v1/impl/ConversionUtils.java @@ -21,8 +21,8 @@ import java.util.List; import java.util.Set; import ch.systemsx.cisd.common.exception.NotImplementedException; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; import ch.systemsx.cisd.etlserver.registrator.DataSetRegistrationDetails; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetInformation; import ch.systemsx.cisd.openbis.generic.shared.basic.TechId; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.Code; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java index 1f381c32cddc369bd896eadd92b6fb2a8d45af78..ed5a94562e1e7b1e6a71b24c68b88dd735a160d0 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponent.java @@ -43,14 +43,14 @@ import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.api.IRpcServiceFactory; import ch.systemsx.cisd.common.api.RpcServiceInterfaceDTO; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.exception.AuthorizationFailureException; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.InvalidSessionException; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.client.api.v1.FileInfoDssDownloader; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDssComponent; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java index a3a962d734f26e5494fed0c6189d0b07801de88f..2b026817a8f6bbec6bc09e9d90eda0aa08beb694 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/OpenbisServiceFacade.java @@ -25,13 +25,13 @@ import java.util.List; import java.util.Map; import ch.rinn.restrictions.Private; -import ch.systemsx.cisd.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.api.retry.RetryCaller; import ch.systemsx.cisd.common.api.retry.RetryProxyFactory; import ch.systemsx.cisd.common.collection.CollectionUtils; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.InvalidSessionException; import ch.systemsx.cisd.common.exception.UserFailureException; +import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.openbis.dss.client.api.v1.DataSet; import ch.systemsx.cisd.openbis.dss.client.api.v1.DssComponentFactory; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java index 995dec9db0249bf638e861426967711adde82223..d68727f69bc6a8518f55866bb725c21611d7d886 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/DataStoreServer.java @@ -26,8 +26,8 @@ import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.properties.ExtendedProperties; -import ch.systemsx.cisd.common.spring.SpringEoDSQLExceptionTranslator; import ch.systemsx.cisd.etlserver.ETLDaemon; +import ch.systemsx.cisd.openbis.common.spring.SpringEoDSQLExceptionTranslator; import ch.systemsx.cisd.openbis.dss.BuildAndEnvironmentInfo; import ch.systemsx.cisd.openbis.dss.generic.server.CommandQueueLister; import ch.systemsx.cisd.openbis.dss.generic.shared.QueueingDataSetStatusUpdaterService; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java index 53e4d33f388fa4e9b3d4f50b5f09eb22b46ab1a3..184a27245602e46b3a3c3f9814c497f4fef5b965 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDatasetDownloadServlet.java @@ -39,9 +39,9 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ImageUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java index 5eaeed073db75ad8716a1c27d7b94d05df752275..316500c96f848e5e47cfe6218213010d448dd2ea 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AbstractDssServiceRpc.java @@ -21,8 +21,8 @@ import java.io.InputStream; import org.springframework.beans.factory.annotation.Autowired; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.spring.AbstractServiceWithLogger; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.spring.AbstractServiceWithLogger; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java index 01521a71d61feb85bde4afad65ac98cbf256ae33..6ba09943720dccd3cc675004f51c236eaed7a868 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtils.java @@ -27,8 +27,8 @@ import org.apache.commons.lang.StringUtils; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Utility class defining methods related to auto resolving data sets. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java index 443d044d253723fbd7ac9f749c84a262b9d63bc4..dc6ef592b705c93c5b372a4e7373389346bbca5e 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServer.java @@ -57,9 +57,6 @@ import com.marathon.util.spring.StreamSupportingHttpInvokerServiceExporter; import ch.systemsx.cisd.common.api.IRpcServiceNameServer; import ch.systemsx.cisd.common.api.RpcServiceInterfaceVersionDTO; -import ch.systemsx.cisd.common.api.server.RpcServiceNameServer; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationClientManagerRemote; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationServerManagerRemote; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.logging.LogCategory; @@ -67,6 +64,9 @@ import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.properties.ExtendedProperties; import ch.systemsx.cisd.common.resource.IInitializable; +import ch.systemsx.cisd.openbis.common.api.server.RpcServiceNameServer; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationClientManagerRemote; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationServerManagerRemote; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DssSessionAuthorizationHolder; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java index 3b693acbcf51dcd4b8a287314cfd81ed71855dff..0c3e86726f8d0075e60d9ea6fd9aa3a4fe870afe 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreService.java @@ -30,8 +30,6 @@ import org.springframework.beans.factory.InitializingBean; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; -import ch.systemsx.cisd.common.conversation.context.ServiceConversationsThreadContext; -import ch.systemsx.cisd.common.conversation.progress.IServiceConversationProgressListener; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; import ch.systemsx.cisd.common.exception.InvalidSessionException; @@ -39,9 +37,11 @@ import ch.systemsx.cisd.common.filesystem.QueueingPathRemoverService; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.common.mail.MailClientParameters; -import ch.systemsx.cisd.common.spring.AbstractServiceWithLogger; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.etlserver.api.v1.PutDataSetService; +import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; +import ch.systemsx.cisd.openbis.common.conversation.progress.IServiceConversationProgressListener; +import ch.systemsx.cisd.openbis.common.spring.AbstractServiceWithLogger; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.ArchiverPluginFactory; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IPluginTaskInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java index 87d60f68e174b88d468b8540bea3e5bd3af19485..d96e6d5ab36ae40245c3fffae9beb9e4886f98a3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DataStoreServiceLogger.java @@ -24,7 +24,7 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.InvalidAuthenticationException; import ch.systemsx.cisd.common.resource.IInitializable; import ch.systemsx.cisd.common.serviceconversation.ServiceMessage; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.generic.shared.IDataStoreService; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.CustomImportFile; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java index 563fb3ead2be3ed29f34cd75d11c0bc5e80be1bf..0339172baa154b32624dd140699f0d36c72cfe73 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServlet.java @@ -36,9 +36,9 @@ import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.Size; import ch.systemsx.cisd.openbis.generic.shared.util.HttpRequestUtils; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java index 8c229b5cf6006ac3ae9ee135a1ee04a6a3dfd442..931862ef0a085204b2986c55d6943f0df6b23fc4 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetImageOverviewServlet.java @@ -25,7 +25,7 @@ import javax.servlet.http.HttpServletResponse; import javax.servlet.http.HttpSession; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.DatasetImageOverviewUtilities; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java index 5e9533589e00666565dccba85e829eb1f44d7626..aaa4440c848f6bea758991ae8e7ad384aa8e1081 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/EncapsulatedOpenBISService.java @@ -24,10 +24,10 @@ import org.apache.commons.lang.time.DateUtils; import org.apache.log4j.Logger; import org.springframework.beans.factory.FactoryBean; -import ch.systemsx.cisd.common.api.client.ServiceFinder; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.api.client.ServiceFinder; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java index 6d861b2c959c1bf205c3f9f950f608128806653e..4e000dd8c7c66da25a0bde205d226cb8ac082d71 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/IDatasetImageOverviewPlugin.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java index 0284be0fa7873d2a2258f79227719089197e9cec..e3451b380027e207eac00adca2837cef15af5359 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/RenderingContext.java @@ -18,8 +18,8 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import org.apache.commons.lang.builder.ToStringBuilder; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; final class RenderingContext { diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java index c2d8b6fa91551325334b784b12ab8edd8665a5de..5a43cad3c63bf2bbc94abb18d5e0ca0a2ef217e4 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationClientManager.java @@ -16,8 +16,8 @@ package ch.systemsx.cisd.openbis.dss.generic.server; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationClientManager; import ch.systemsx.cisd.common.spring.PropertyPlaceholderUtils; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationClientManager; import ch.systemsx.cisd.openbis.generic.shared.IETLLIMSService; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationApplicationServerUrl; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationDataStoreClientId; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java index 95b9e407d5a924aac2ba8e1b2c329181848bd355..e592152a3f5fb921d4725e4adffee9c6ba0a52a6 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ServiceConversationServerManager.java @@ -18,9 +18,9 @@ package ch.systemsx.cisd.openbis.dss.generic.server; import org.springframework.beans.factory.InitializingBean; -import ch.systemsx.cisd.common.conversation.client.ServiceConversationClientDetails; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationServerManager; import ch.systemsx.cisd.common.spring.PropertyPlaceholderUtils; +import ch.systemsx.cisd.openbis.common.conversation.client.ServiceConversationClientDetails; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationServerManager; import ch.systemsx.cisd.openbis.generic.shared.IDataStoreService; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationApplicationServerClientId; import ch.systemsx.cisd.openbis.generic.shared.conversation.ServiceConversationApplicationServerUrl; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java index 1f557c08d8b98562b985d53737b53639d6d75c5b..4da24df40ddf1ec970bc27256300f8d398db195d 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommand.java @@ -40,15 +40,15 @@ import ch.systemsx.cisd.cifex.rpc.client.ICIFEXComponent; import ch.systemsx.cisd.cifex.rpc.client.ICIFEXUploader; import ch.systemsx.cisd.cifex.rpc.client.gui.IProgressListener; import ch.systemsx.cisd.cifex.shared.basic.Constants; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.mail.MailClient; import ch.systemsx.cisd.common.mail.MailClientParameters; import ch.systemsx.cisd.common.security.TokenGenerator; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java index b7b35905d1bdafc6846c31bfba348b74e70a4c0f..b955dc3dc9d763ce8e37a4ee9e52b0e35128dbd2 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/Utils.java @@ -20,7 +20,7 @@ import javax.activation.MimetypesFileTypeMap; import org.apache.commons.io.FilenameUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java index 429e0bc40753c35849a8be626bdc1677ef78968b..b5701825a85b8812567dc8ed30eae0f942235920 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGeneric.java @@ -32,13 +32,13 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.etlserver.api.v1.PutDataSetService; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractDssServiceRpc; import ch.systemsx.cisd.openbis.dss.generic.server.IStreamRepository; import ch.systemsx.cisd.openbis.dss.generic.server.SessionWorkspaceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java index 3447568a0cff52c57febccfb9bebcf758634a8b2..d74998e699b2860c5b5a0ff5a352419a7b451b90 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericLogger.java @@ -20,7 +20,7 @@ import java.io.File; import java.io.InputStream; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.DataSetAccessGuard; import ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.authorization.IDssServiceRpcGenericInternal; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.DataSetFileDTO; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java index aa8f4ed3822ef54d7a06cc0edd2863c2ba9189a3..94bae15ea0f3acbd52a6a6af08223bd8373f1757 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/FtpFileFactory.java @@ -20,9 +20,9 @@ import java.io.File; import org.apache.ftpserver.ftplet.FtpFile; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentNodeFilter; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentNodeFilter; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.resolver.FtpFileImpl; /** diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java index e112df1a69bcf480027fbd2e085e9bccfa05a394..20aa978f3fc44b8f02f18196db094eef34df277c 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileEvaluationContext.java @@ -25,8 +25,8 @@ import java.util.Map; import org.apache.commons.lang.StringUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java index 4f634a1699ea73d112da8577c43b480670258e87..61496d8fc1cdc0978951b3f06364454846993ba3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/FtpFileImpl.java @@ -23,10 +23,10 @@ import java.util.List; import org.apache.ftpserver.ftplet.FtpFile; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentNodeFilter; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentNodeFilter; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpConstants; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpFileFactory; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java index 095863d1f8afe8f51cfc70563bcd8f49ee591bd4..5ea7717addb838649846ceb10c041012fcdbb938 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolver.java @@ -32,12 +32,12 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentNodeFilter; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.string.Template; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentNodeFilter; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpConstants; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpFileFactory; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpPathResolverContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java index 4cbf44bd952fb2b5ed1c4f1a2f17f78c12fa16bb..26b797d5a4c647946e09e04e5568620a98b2c4e7 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoOverviewPlugin.java @@ -27,8 +27,8 @@ import java.util.Properties; import javax.imageio.ImageIO; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.IDatasetImageOverviewPlugin; import ch.systemsx.cisd.openbis.dss.generic.server.ResponseContentStream; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ImageResolutionKind; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java index 104ce5081a8cd9604bc89bd8061be207986207b7..da07d21504c9df6d96ab0a14e7ee2a58b638f57a 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoProcessingPlugin.java @@ -22,9 +22,9 @@ import java.util.Properties; import org.apache.log4j.Logger; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.HierarchicalContentTraverseUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java index fe5d781a614d875cfe0c6de97433bcd84d407a90..0628ec71f6125b301ecb10fb01914ee0738a93f3 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/demo/DemoReportingPlugin.java @@ -22,7 +22,7 @@ import java.util.Date; import java.util.List; import java.util.Properties; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.AbstractTableModelReportingPlugin; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.HierarchicalContentTraverseUtil; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java index ac452ae6fb87a68296c433c54134d6862613c8df..b321885454926db4380ca579ad93605ab68db493 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedPluginUtils.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython; import java.util.ArrayList; import java.util.List; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java index 71b90bfb0430bf6df6e76804120d212d281e4cb5..a176de1e19fb530272a61f97017764a59700abf8 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/PluginScriptRunnerFactory.java @@ -25,13 +25,13 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.jython.evaluator.Evaluator; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; import ch.systemsx.cisd.etlserver.registrator.api.v2.IDataSetRegistrationTransactionV2; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IMailService; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java index 9710d2c8299cd270f466fd804abb7af7d92932cd..a723d1f7de9e2a4ca2aa64bc0e60ad97a0bcf640 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/api/IDataSet.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; /** * Abstraction of a data set with both content and metadata. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java index 777ac7329105a3931591f32a1431d1454f57c4f1..5c2aa2ff9d37efded1455f9da09a244f56540d87 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/AbstractDatastorePlugin.java @@ -24,10 +24,10 @@ import org.apache.commons.lang.StringUtils; import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java index 61534c3912262b8f64c13addc1144319b4520afb..539814b76eed04ad02463e66d86ea37c4106d634 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPlugin.java @@ -32,12 +32,12 @@ import org.apache.log4j.Logger; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.MailService; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IEmailSender; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IProcessingPluginTask; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java index d07867a32b5a01a44335b8014fb4d5e2db974b90..a5feb8361a70c7b5164a572bc52c9c5723b3ece4 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiver.java @@ -28,10 +28,10 @@ import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.filesystem.BooleanStatus; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ArchiverTaskContext; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java index 32f6568c4c6f80dabb6b156116a22dbb0baed64b..372d0c99850c96b4062eef2cc9712202a0d69452 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPlugin.java @@ -21,9 +21,9 @@ import java.util.List; import java.util.Properties; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.properties.PropertyUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.AutoResolveUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetFileLines; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java index 3b75976744e7ded5a3005215887c97ff5b6bd99b..0467a2cfb0e12518ecd55eabd8c389021aa8080b 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentChecksumProvider.java @@ -18,10 +18,8 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.io.IOException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; -import ch.systemsx.cisd.openbis.dss.generic.shared.IChecksumProvider; -import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Checksum provider that uses a hierarchical content provider to get checksums. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java index 345724bd5b322192a7b282fd9ac8b02a07909d84..7c5359bafb7b2635d866ca13173d297d99246f42 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProvider.java @@ -24,10 +24,10 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.content.PathInfoDBAwareHierarchicalContentFactory; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalDataLocationNode; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java index 43d2fbbb635ea8b4481a2dcaa6154f7dc336fc5e..4841520a515535da943c08f9b088d5574f5b934f 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentTraverseUtil.java @@ -18,9 +18,9 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.util.List; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * A utility class to abstract traversing of {@link IHierarchicalContentNode}-s. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java index ab8ef46bfd311e53cfbe29a1ba72d1e748c4740f..e9e6e404ca7a5340c4d4fa389365ab36e48dc565 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentNodeVisitor.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * A visitor for {@link IHierarchicalContentNode}-s. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java index 4933f4feb3810f4ac92bca12aa61a0953bc56e0c..2a6d2fe9877d351987ae11b522eb6a71c4836074 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/IHierarchicalContentProvider.java @@ -18,7 +18,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared; import java.io.File; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java index 1e35f645b2ebd131697afd025ae5d0773f09b95f..4c0fb72474296e78a77f191d9fb6e90668f715f9 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/internal/v1/IDataSetContentProvider.java @@ -16,7 +16,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.internal.v1; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; /** * Interface for classes providing {@link IHierarchicalContent} of a data set. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java index 9855b9a9781dcffe815d6fbb45b2e6b5e9f3ae4a..5104ff7ad308c38dd060f55cc5011be8eddcfcb6 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/api/v1/HierarchicalFileInfoDssBuilder.java @@ -19,7 +19,7 @@ package ch.systemsx.cisd.openbis.dss.generic.shared.api.v1; import java.io.IOException; import java.util.ArrayList; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Helper Class for creating FileInfoDss objects based on file system abstraction. diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java index 5ce40771bc2b7538a27c4cf189b6b1a1c82714f2..19d7e823542b3b0cb789c40e1d5592878923c288 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBAwareHierarchicalContentFactory.java @@ -6,11 +6,11 @@ import org.apache.log4j.Logger; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java index cce3740d05407b7dba9c377142e48702c9555c84..32e0063686334759265bb7f63faf82cd28883f73 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoDBOnlyHierarchicalContentFactory.java @@ -20,9 +20,9 @@ import java.io.File; import ch.rinn.restrictions.Private; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.ServiceProvider; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java index 1a78fc926fcd01bf7208653fc09773817aa515f9..8d5d2ba8cca39115ebb53186af9896f49eb3aab1 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContent.java @@ -29,11 +29,11 @@ import ch.systemsx.cisd.base.io.RandomAccessFileImpl; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.filesystem.FileUtilities; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.AbstractHierarchicalContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.HDF5ContainerBasedHierarchicalContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.shared.basic.string.StringUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.AbstractHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HDF5ContainerBasedHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java index 86ce6cdc1c7a61a5d923f8463467ef061133ecf1..8a980484dc585896005e23b7b0f75a62e1ae19a6 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/dto/DataSetInformation.java @@ -24,7 +24,7 @@ import java.util.List; import org.apache.commons.lang.StringUtils; import ch.systemsx.cisd.common.time.DateFormatThreadLocal; -import ch.systemsx.cisd.common.types.BooleanOrUnknown; +import ch.systemsx.cisd.openbis.common.types.BooleanOrUnknown; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.SpeedUtils; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.ToStringUtil; import ch.systemsx.cisd.openbis.generic.shared.IServer; diff --git a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java index a68f7dea7ee96d0051defcf38742cddaebeb8e08..c70f19fbbc378a1538002cc14e86f8e5c69fd9c9 100644 --- a/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java +++ b/datastore_server/source/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtil.java @@ -49,8 +49,6 @@ import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.image.IntensityRescaling; import ch.systemsx.cisd.common.image.IntensityRescaling.GrayscalePixels; import ch.systemsx.cisd.common.image.IntensityRescaling.Levels; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.imagereaders.IImageReader; @@ -58,6 +56,8 @@ import ch.systemsx.cisd.imagereaders.IReadParams; import ch.systemsx.cisd.imagereaders.ImageID; import ch.systemsx.cisd.imagereaders.ImageReaderConstants; import ch.systemsx.cisd.imagereaders.ImageReaderFactory; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Utility function on images. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java index aa825b912d4e1752002d6aa97ddb4d2b233bef61..618debef77e6ddb6f1d22b6be1982808d0149283 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/api/v1/PutDataSetTopLevelDataSetHandlerTest.java @@ -37,9 +37,6 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.ByteArrayBasedContentNode; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; @@ -52,6 +49,9 @@ import ch.systemsx.cisd.etlserver.ThreadParameters; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransactionTest.MockStorageProcessor; import ch.systemsx.cisd.etlserver.registrator.recovery.DataSetStorageRecoveryManager; +import ch.systemsx.cisd.openbis.common.io.ByteArrayBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.FileInfoDssDTO; import ch.systemsx.cisd.openbis.dss.generic.shared.api.v1.NewDataSetDTO; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java index 6c6be735e45c0abad499fe393f36e4ea668bcd58..673e081a1cd5e7c0b9eda49dd8c2ab387c565200 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/hdf5/AbstractHDF5StorageProcessorTest.java @@ -21,12 +21,12 @@ import java.util.Properties; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.hdf5.FileToHDF5DuplicationVerifier; -import ch.systemsx.cisd.common.hdf5.HDF5Container; -import ch.systemsx.cisd.common.hdf5.HDF5Container.IHDF5ReaderClient; -import ch.systemsx.cisd.common.hdf5.IHDF5ContainerReader; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.IStorageProcessorTransaction; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.StorageProcessorTransactionParameters; +import ch.systemsx.cisd.openbis.common.hdf5.FileToHDF5DuplicationVerifier; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container; +import ch.systemsx.cisd.openbis.common.hdf5.HDF5Container.IHDF5ReaderClient; +import ch.systemsx.cisd.openbis.common.hdf5.IHDF5ContainerReader; /** * Tests for {@link HDF5StorageProcessor}. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java index 736e509f36acdb6cccdee294a28d14d1db6fea92..f285d7c5bef839da9b13a5c06af57e3640ef9623 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/DatabaseBasedDataSetPathsInfoFeederTest.java @@ -30,8 +30,8 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; import ch.systemsx.cisd.etlserver.IDataSetPathsInfoFeeder; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; /** * @author Franz-Josef Elmer diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java index 86fe06736376ef2b2844f793bf9619bbb9cf07de..e08d32ab5f3d4b2f4a06e853dd23fd215b7a7ce9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseChecksumCalculationTaskTest.java @@ -28,10 +28,10 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.utilities.ITimeProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; /** diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java index 616c801c9a98e3ffab069a194748181813f8183e..725104b6784813e0966e43fb1693589ee0246fba 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoDatabaseFeedingTaskTest.java @@ -32,10 +32,10 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogInitializer; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IEncapsulatedOpenBISService; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java index 694e917b9299b4ba1c61adbb9ad02f3bfacb713d..b0ed06e5d6d78e3fac8b6d74e9e64c2a7e74bd64 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/path/PathInfoTest.java @@ -24,9 +24,9 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java index cd8979bb46d5ed057dfa686f9a313104e7197e37..5c0ffebb0d2f6ee7d36f26a4afd759083fff33ef 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/etlserver/registrator/JythonTopLevelDataSetRegistratorTest.java @@ -41,7 +41,6 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.eodsql.MockDataSet; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.exception.NotImplementedException; import ch.systemsx.cisd.common.exception.UserFailureException; @@ -55,6 +54,7 @@ import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional; import ch.systemsx.cisd.etlserver.IStorageProcessorTransactional.UnstoreDataAction; import ch.systemsx.cisd.etlserver.ThreadParameters; import ch.systemsx.cisd.etlserver.TopLevelDataSetRegistratorGlobalState; +import ch.systemsx.cisd.openbis.common.eodsql.MockDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.utils.DatasetLocationUtil; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria; import ch.systemsx.cisd.openbis.generic.shared.api.v1.dto.SearchCriteria.MatchClause; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java index dcda1f090c59917974ee7a0a81460628ce4945f5..be33ade2620bd4a0f60f28e4cd6fbaa3ce93a6b6 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/datastoreserver/systemtests/ServiceConversationTest.java @@ -48,17 +48,17 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.TimeoutExceptionUnchecked; import ch.systemsx.cisd.common.concurrent.ConcurrencyUtilities; import ch.systemsx.cisd.common.concurrent.MessageChannel; -import ch.systemsx.cisd.common.conversation.annotation.Conversational; -import ch.systemsx.cisd.common.conversation.annotation.Progress; -import ch.systemsx.cisd.common.conversation.client.ServiceConversationClientDetails; -import ch.systemsx.cisd.common.conversation.context.ServiceConversationsThreadContext; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationClientManager; -import ch.systemsx.cisd.common.conversation.manager.BaseServiceConversationServerManager; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationClientManagerRemote; -import ch.systemsx.cisd.common.conversation.manager.IServiceConversationServerManagerRemote; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.serviceconversation.client.ServiceExecutionException; -import ch.systemsx.cisd.common.spring.WaitAction; +import ch.systemsx.cisd.openbis.common.conversation.annotation.Conversational; +import ch.systemsx.cisd.openbis.common.conversation.annotation.Progress; +import ch.systemsx.cisd.openbis.common.conversation.client.ServiceConversationClientDetails; +import ch.systemsx.cisd.openbis.common.conversation.context.ServiceConversationsThreadContext; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationClientManager; +import ch.systemsx.cisd.openbis.common.conversation.manager.BaseServiceConversationServerManager; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationClientManagerRemote; +import ch.systemsx.cisd.openbis.common.conversation.manager.IServiceConversationServerManagerRemote; +import ch.systemsx.cisd.openbis.common.spring.WaitAction; @Test public class ServiceConversationTest diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java index c6fa92950c9fd5e59c0d390ae1983f02e10e3539..9db800153367963a0c142a7c6b2cf73df7893639 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/client/api/v1/impl/DssComponentTest.java @@ -52,7 +52,7 @@ import ch.systemsx.cisd.common.exception.AuthorizationFailureException; import ch.systemsx.cisd.common.exception.EnvironmentFailureException; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.spring.IInvocationLoggerContext; +import ch.systemsx.cisd.openbis.common.spring.IInvocationLoggerContext; import ch.systemsx.cisd.openbis.dss.client.api.v1.IDataSetDss; import ch.systemsx.cisd.openbis.dss.generic.server.AbstractDssServiceRpc; import ch.systemsx.cisd.openbis.dss.generic.server.DatasetSessionAuthorizer; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java index f0d6a59d545bf0ca24aa76f9feebff3e7def543e..d0ea377b35dd7086dcdf61b38a393e4e31b0679e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/AutoResolveUtilsTest.java @@ -30,9 +30,9 @@ import org.testng.annotations.Test; import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogInitializer; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * Test cases for {@link AutoResolveUtils}. diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java index d3a6a1e03467e4d26f60c791c0b8db89af01c915..0999cceacf9f9aa4afa54f798982be0af9557031 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DatasetDownloadServletTest.java @@ -51,10 +51,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.exceptions.CheckedExceptionTunnel; import ch.systemsx.cisd.base.utilities.OSUtilities; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.test.AssertionUtil; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.MockDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.HierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java index d88f0aa5c7d50ae799bced32bd13aff906d267bd..9051f5b3892629e286b2246997dbdebb6e9ed1f4 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/DssServiceRpcV1Test.java @@ -42,11 +42,6 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.filesystem.QueueingPathRemoverService; -import ch.systemsx.cisd.common.io.ConcatenatedContentInputStream; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.LogCategory; import ch.systemsx.cisd.common.logging.LogFactory; import ch.systemsx.cisd.common.mail.IMailClient; @@ -61,6 +56,11 @@ import ch.systemsx.cisd.etlserver.api.v1.TestDataSetTypeToTopLevelRegistratorMap import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetRegistrationTransactionTest.MockStorageProcessor; import ch.systemsx.cisd.etlserver.registrator.recovery.DataSetStorageRecoveryManager; import ch.systemsx.cisd.etlserver.validation.IDataSetValidator; +import ch.systemsx.cisd.openbis.common.io.ConcatenatedContentInputStream; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.DssServiceRpcAuthorizationAdvisor.DssServiceRpcAuthorizationMethodInterceptor; import ch.systemsx.cisd.openbis.dss.generic.server.api.v1.DssServiceRpcGeneric; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.standard.MockDataSetDirectoryProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java index efd0745a6ae1bec8e8c56b22385a3fe63884f307..801cbefedf71872dab45cd8eac1a60672bd8bbfe 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/UploadingCommandTest.java @@ -49,10 +49,10 @@ import ch.systemsx.cisd.cifex.rpc.client.gui.IProgressListener; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.AuthorizationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.mail.MailClientParameters; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDirectoryProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IShareIdManager; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java index e4c4366df2d7f49497fb03b07787e6f134815d68..d1cf39c44b981083a2518dfb9ad6d214e32a7bde 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/api/v1/DssServiceRpcGenericTest.java @@ -30,8 +30,8 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.common.io.IOUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.DatasetSessionAuthorizer; import ch.systemsx.cisd.openbis.dss.generic.server.DssServiceRpcAuthorizationAdvisor; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IPluginTaskInfoProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java index 8234917d5cb3d97bbd36edd32d3adebb9fb6d805..2cac5be3df5e1a36fca40fc8c304e6416b46b885 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/ftp/resolver/TemplateBasedDataSetResourceResolverTest.java @@ -40,11 +40,11 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.test.TrackingMockery; import ch.systemsx.cisd.common.utilities.ITimeProvider; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.Cache; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpConstants; import ch.systemsx.cisd.openbis.dss.generic.server.ftp.FtpPathResolverContext; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java index 90a1be99553b497074100c48f078ab9b6b8b6adf..241967c522f8aab89729dbdf13b622dcc6ba32ae 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedAggregationServiceReportingPluginTest.java @@ -32,11 +32,11 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.mail.IMailClient; import ch.systemsx.cisd.common.test.RecordingMatcher; import ch.systemsx.cisd.etlserver.registrator.api.v1.impl.DataSetImmutable; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.tasks.IReportingPluginTask; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java index 7a3e51fa0498e9b755769e5e4d3c719e6d6f817f..c6ed1fdc3d54a00b53c03b0d26048bec8b321b49 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedProcessingPluginTest.java @@ -27,10 +27,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.Status; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java index 8b9a7aa49f886ce8e64ce3831f3668d90375345c..ffcf7d914558b8df2f29d588e95346a1a41d144e 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/jython/JythonBasedReportingPluginTest.java @@ -29,10 +29,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.UserFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.jython.evaluator.EvaluatorException; import ch.systemsx.cisd.common.logging.LogInitializer; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.jython.api.IDataSet; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java index d007953ac7341c49f5be58cc036e3d6528ee5972..bb5e9734a5fcce48e2d4234354ed83194342d68b 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/DataSetAndPathInfoDBConsistencyCheckProcessingPluginTest.java @@ -30,10 +30,10 @@ import org.testng.annotations.DataProvider; import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.mail.EMailAddress; import ch.systemsx.cisd.common.mail.IMailClient; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.dto.DatasetDescription; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java index 19003d30ae3ba4aa8066f4a39dbd7b15b238c434..ea44393e7a5c6670d27bdc4fd344a5c38d42cd2b 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/RsyncArchiverTest.java @@ -45,10 +45,10 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.exception.Status; import ch.systemsx.cisd.common.filesystem.BooleanStatus; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.logging.BufferedAppender; import ch.systemsx.cisd.common.logging.LogInitializer; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ArchiverTaskContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IConfigProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.IDataSetDeleter; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java index 4829f8dd0dced2b3a66081e88344eca72487a46f..8af4a09e3b341574630f78b249cbc34d7fd6ebf2 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/standard/TSVViewReportingPluginTest.java @@ -31,8 +31,8 @@ import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.UserFailureException; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.shared.DataSetProcessingContext; import ch.systemsx.cisd.openbis.dss.generic.shared.IHierarchicalContentProvider; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.ExternalData; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java index 833b0b4661ff1678425455bf500342ea94c48f54..1783cc980833adb11ee007aae0ceed4ea93d22a0 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/server/plugins/tasks/PluginTaskParametersTest.java @@ -38,10 +38,10 @@ import ch.rinn.restrictions.Friend; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.exception.ConfigurationFailureException; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.common.properties.PropertyParametersUtil.SectionProperties; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; import ch.systemsx.cisd.openbis.dss.generic.server.IServletPropertiesManager; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.demo.DemoProcessingPlugin; import ch.systemsx.cisd.openbis.dss.generic.server.plugins.demo.DemoReportingPlugin; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java index 4795aa98c02bc35daf72839cbe22c609967c3bae..f0bfa43365e791d6b571a2ac52417ca71153ebe9 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/HierarchicalContentProviderTest.java @@ -28,10 +28,10 @@ import org.testng.annotations.BeforeMethod; import org.testng.annotations.Test; import ch.systemsx.cisd.common.action.IDelegatedAction; -import ch.systemsx.cisd.common.io.hierarchical_content.IHierarchicalContentFactory; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.common.test.RecordingMatcher; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.IHierarchicalContentFactory; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DatasetLocation; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.DatasetLocationNode; import ch.systemsx.cisd.openbis.generic.shared.basic.dto.IDatasetLocation; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java index 08b2a1a9536c9108e955373bf87074f5a2f77fbf..9e3a22af7324a56ce050043716b08bf8b891fb64 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/content/PathInfoProviderBasedHierarchicalContentTest.java @@ -30,10 +30,10 @@ import org.testng.annotations.Test; import ch.systemsx.cisd.base.tests.AbstractFileSystemTestCase; import ch.systemsx.cisd.common.action.IDelegatedAction; import ch.systemsx.cisd.common.filesystem.FileUtilities; -import ch.systemsx.cisd.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentTest; -import ch.systemsx.cisd.common.io.hierarchical_content.HierarchicalContentUtils; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContent; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.DefaultFileBasedHierarchicalContentTest; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.HierarchicalContentUtils; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContent; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.openbis.dss.generic.shared.ISingleDataSetPathInfoProvider; import ch.systemsx.cisd.openbis.dss.generic.shared.dto.DataSetPathInfo; diff --git a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java index 6e4c97203f632f4bc32ddb0b671f786456ef6464..d0952b083f7faac854f6555a114be10908d968c0 100644 --- a/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java +++ b/datastore_server/sourceTest/java/ch/systemsx/cisd/openbis/dss/generic/shared/utils/ImageUtilTest.java @@ -30,10 +30,10 @@ import ch.systemsx.cisd.base.exceptions.IOExceptionUnchecked; import ch.systemsx.cisd.base.io.ByteBufferRandomAccessFile; import ch.systemsx.cisd.base.io.IRandomAccessFile; import ch.systemsx.cisd.base.io.RandomAccessFileImpl; -import ch.systemsx.cisd.common.io.FileBasedContentNode; -import ch.systemsx.cisd.common.io.hierarchical_content.api.IHierarchicalContentNode; import ch.systemsx.cisd.imagereaders.ImageReaderConstants; import ch.systemsx.cisd.imagereaders.ImageReadersTestHelper; +import ch.systemsx.cisd.openbis.common.io.FileBasedContentNode; +import ch.systemsx.cisd.openbis.common.io.hierarchical_content.api.IHierarchicalContentNode; /** * @author Franz-Josef Elmer