diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/FeatureSite.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/FeatureSite.class new file mode 100644 index 0000000000000000000000000000000000000000..240c9407440d6a210dca92ae543f1b4db40a30a1 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/FeatureSite.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/LibrarySeq.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/LibrarySeq.class new file mode 100644 index 0000000000000000000000000000000000000000..fb04fbd8b5d2e6747871d2ac293cbe3000ef6fc5 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/LibrarySeq.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/OpenReadingFrame.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/OpenReadingFrame.class new file mode 100644 index 0000000000000000000000000000000000000000..c87036440106b776878b96fd5f886ce339aadcdc Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/OpenReadingFrame.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasFeatures.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasFeatures.class new file mode 100644 index 0000000000000000000000000000000000000000..db86d57f7b23541e8e31a4efa482d12bea1a769a Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasFeatures.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasMapperConstants.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasMapperConstants.class new file mode 100644 index 0000000000000000000000000000000000000000..13ea14877a96a41bd44a950ee99d60ede0eea428 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasMapperConstants.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidCleavageSiteAnnotate.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidCleavageSiteAnnotate.class new file mode 100644 index 0000000000000000000000000000000000000000..218fdd8125c616eec8b9c18203a1ba5e32765e93 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidCleavageSiteAnnotate.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidFeatureAnnotate.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidFeatureAnnotate.class new file mode 100644 index 0000000000000000000000000000000000000000..b86bdfe68d3cb08c5d96e9212687069a114bdf3d Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidFeatureAnnotate.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidTool.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidTool.class new file mode 100644 index 0000000000000000000000000000000000000000..e44a5c953b520918e106aa3d64c93dd27bad51a4 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/PlasmidTool.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/Test.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/Test.class new file mode 100644 index 0000000000000000000000000000000000000000..dea6990e2a0df3ed3f8e0c0cda038b3921b0318f Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/Test.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/Utility.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/Utility.class new file mode 100644 index 0000000000000000000000000000000000000000..32ed15f4f219008009a76afccbee7942f63d3d2c Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/Utility.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/VectorSeqDatabase.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/VectorSeqDatabase.class new file mode 100644 index 0000000000000000000000000000000000000000..ca9235c120924c9ff1b9f1fbdbeb168cdde8eec2 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/annotate/VectorSeqDatabase.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/.gitignore b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/.gitignore deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/DrawVectorMap.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/DrawVectorMap.class new file mode 100644 index 0000000000000000000000000000000000000000..7d914febea6d078398931bc39adb70662a21259d Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/DrawVectorMap.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/GenbankOutput.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/GenbankOutput.class new file mode 100644 index 0000000000000000000000000000000000000000..957884d1e1a37fa9245bb70a75aa10ee58b32295 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/GenbankOutput.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/TextMap.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/TextMap.class new file mode 100644 index 0000000000000000000000000000000000000000..48db88711d9af8610f7725c5584f901bc5841f3a Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/servlet/TextMap.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/.gitignore b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/.gitignore deleted file mode 100644 index e69de29bb2d1d6434b8b29ae775ad8c2e48c5391..0000000000000000000000000000000000000000 diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/ParseRebaseFormat31.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/ParseRebaseFormat31.class new file mode 100644 index 0000000000000000000000000000000000000000..03da25ac10eca72472c3e1b1fe2837fe630de0bc Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/ParseRebaseFormat31.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/RemoveFeatureDBHeader.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/RemoveFeatureDBHeader.class new file mode 100644 index 0000000000000000000000000000000000000000..0fdf243c72939c1c02010fe528adb25e9e0f135d Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/RemoveFeatureDBHeader.class differ diff --git a/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/VerifyVectorFeatureFormat.class b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/VerifyVectorFeatureFormat.class new file mode 100644 index 0000000000000000000000000000000000000000..8a2738030c0779e0b1a1fc63e7e479b7cb8a57e6 Binary files /dev/null and b/plasmid/source/core-plugins/eln-lims/bin/plasmapper/universal/WEB-INF/classes/ca/ualberta/xdong/plasMapper/util/VerifyVectorFeatureFormat.class differ