DataSet Upload Workflow

1. Installing the DataSet Uploader

BBB-Hub uses openBIS as front end, so the first step to Upload a DataSet is to install the "openBIS DataSet Uploader" from the openBIS Downloads Page.

2. Submitting a DataSet

When first starting the DataSet uploader a login screen is presented, you can use the same credentials you use on the website.

When filling the information for the upload you need to:

1. Select the "FOLDER" containing your "EXPERIMENT_DEFINITION" DataSet.

2. Select as owner "/PUBLIC/SUBMISSIONS/SUBMISSION_OWNER".

3. Select as Data Set Type "EXPERIMENT_DEFINITION".

A working example is shown below.

Last, press the "UPLOAD" button, this will start the upload of your DataSet and a progress bar will be shown, changing to the message "registered" when finished.

After the registration process is finished, can take a few seconds/minutes you should find the result on the interface under the "INPUT" section as shown below.

3. Obtaining the results

The administrator will automatic receive an email from the system to execute the workflow of your submission after registration.

The results will be registered under the "RESULTS" section of your experiment on the UI when this are available.

4. Experiment Definition Format

An example of the format used by the EXPERIMENT_DEFINITION DataSet with dummy fasta files can be found here.