SVN: 32942

Add option to create HDF5CompoundTypes which are not required to be equal to the compound types they are used to read (method IHDF5CompoundInformationRetriever.getType() with option requireTypesToBeEqual).

SVN: 32561

Fix: If a POJO is annotated with @CompundType(mapAllFields=false), then don't complain if some fields or some members are not mapped to each other.

SVN: 32552

SVN: 32545

SVN: 32355

SVN: 32339

SVN: 32337

SVN: 32310

SVN: 32309

SVN: 32238

SVN: 32149

SVN: 32148

Deprecate IHDF5UnsignedXXXWriter and make IHDF5Writer return IHDF5XXXWriter for the according unsigned writers.

SVN: 32147

Bug fix: HDF5UnsignedXXXWriter's need to extend HDF5UnsingedXXXReader's rather than HDF5XXXReader's, otherwise they cannot read the values they just wrote.

SVN: 32146

Rename readSlicedMDArray() to readMDArraySlice().

SVN: 32145

SVN: 32144

SVN: 32143

SVN: 32142

SVN: 32141

Fix bug when a space dimension is not specified (i.e. -1) given and ensure input parameter blockDimension is not changed when reading from an array type.

SVN: 32140

Methods IHDF5XXXReader.readSlicedMDArray(), IHDF5XXXReader.readSlicedMDArrayBlock() and IHDF5XXXReader.readSlicedMDArrayBlockWithOffset() for reading slices of multi-dimensional arrays.

SVN: 32139

* In primitive readers' IHDF5XXXReader.readMDArrayBlockWithOffset() method, allow a value of -1 as blockDimension which will be replaced with the full dimension along this axis.
* Allow reading of data sets with simple (dimensional) data spaces and array types of primitive types as elements. Is supported by IHDF5XXXReader.readMDArray() where space indices and array indices are concatenated (in this order). Note that JHDF5 does not allow to write such data sets, only to read it if other programs wrote them.
* Add methods getSpaceRank(), getSpaceDimensions(), getArrayRank(), getArrayDimension(), getRank() and getDimensions() to IHDF5ObjectReadOnlyInfoProviderHandler.
* Method HDF5DataTypeInformation.getRank().
* HDF5DataTypeInformation.getDimensions() now retuns an empty int[] if the data type is scalar (be consistent with HDF5DataSetInformation.getDimension()). Code who calls getDimensions()[0] on scalar data types to determine the number of elements may fail and has to be changed to call getNumberOfElements().

SVN: 32138

Add a hint to use variable-length strings for string compound members to modify the default mapping.

SVN: 32137

Enforce memory alignment for in-memory representations of HDF5 compounds (misalignments can lead to SIGBUS errors on non-Intel platforms).
Fix compilation on Microsoft Visual-C++ and add Windows and Mac native builds.

SVN: 32136

Enforce memory alignment for in-memory representations of HDF5 compounds (misalignments can lead to SIGBUS errors on non-Intel platforms).

SVN: 32135

SVN: 32076

SVN: 32064

SVN: 31910

SSDM-561: 'apply from' remote (http://svncisd.ethz.ch/repos/cisd/gradle/trunk/javaproject.gradle) replaced by local (../gradle/javaproject.gradle)

SVN: 31885

SVN: 31785

SVN: 31692

Adapt build scripts to use the native HDF5 libraries under libs/native and the native libraries in the build dependencies (cisd-base) rather the ones in the libraries project.

SVN: 31690

SVN: 31689

SVN: 31688

SVN: 31687

SVN: 31686

SVN: 31685

Do not use link-time optimization in the final library link step as it breaks the 'exclude-libs,ALL' instruction to the linker.

SVN: 31684

Do not exit the JVM when we find an unsupported version of HDF5, but throw an UnsupportedOperationException.

SVN: 31683

SVN: 31680