diff --git a/disk/InteractionDisk_temp.py b/disk/InteractionDisk_temp.py index cc7368b2b9da526203cfb9116833b6b8d32cff00..67de82d79aa2d50f0252b3b0af721fc3f5a2111b 100644 --- a/disk/InteractionDisk_temp.py +++ b/disk/InteractionDisk_temp.py @@ -51,7 +51,6 @@ class Reader: self.sizey = images.sizes['y'] self.sizec = images.sizes['c'] self.sizet = images.sizes['t'] - print("Debug: self.sizet",self.sizet) try: self.Npos = images.sizes['v'] except KeyError: @@ -63,7 +62,6 @@ class Reader: self.sizey, self.sizex = handle.shape #SJR: changed by me self.sizec = 1 self.sizet = handle.number_of_pages - print("Debug: handle.number_of_pages",handle.number_of_pages) self.Npos = 1 self.channel_names = ['Channel1'] @@ -89,7 +87,6 @@ class Reader: self.sizec = 1 self.Npos = 1 self.sizet = len(filelist) - print("Debug: self.sizet",self.sizet) self.channel_names = ['Channel1'] #create the labels which index the masks with respect to time and @@ -289,9 +286,6 @@ class Reader: """ if currentT <= len(self.tlabels) - 1: for t in file['/{}'.format(self.fovlabels[currentFOV])].keys(): - print('Debug currentT',currentT) - print('Debud self.tlabels',self.tlabels) - print(len(self.tlabels)) # currentT is a number # self.tlabels is some string that indexes the time point? E.g., T0? if t == self.tlabels[currentT]: @@ -395,8 +389,6 @@ class Reader: except ValueError: pass images.default_coords['c'] = self.default_channel - print('Debug in InteractionDisk_temp',currentfov) - print('Debug in InteractionDisk_temp',self.default_channel) images.iter_axes = 't' im = images[currentT] @@ -404,8 +396,6 @@ class Reader: with pytiff.Tiff(self.nd2path) as handle: handle.set_page(currentT) im = handle[:] - print('Debug in InteractionDisk_temp',im.shape) -# print('Debug in InteractionDisk_temp',im[0,0],np.amin(im),np.amax(im)) elif self.isfolder: filelist = sorted(os.listdir(self.nd2path))