diff --git a/init/InitButtons.py b/init/InitButtons.py
index 3848d855541b874f04bb054393d5077f11e3e6b8..7967853f32f966359345415eddf0f5980ada5fd0 100644
--- a/init/InitButtons.py
+++ b/init/InitButtons.py
@@ -2,310 +2,250 @@
"""
Initializing all the buttons in this file.
"""
-from PyQt5.QtWidgets import QWidget, QPushButton, QShortcut, QComboBox, QCheckBox, QLineEdit, QStatusBar
+from PyQt5.QtWidgets import QPushButton, QComboBox, QLineEdit
from PyQt5 import QtGui
-from PyQt5.QtCore import pyqtSignal, QObject, Qt
+from PyQt5.QtCore import Qt
import numpy as np
def Init(parent):
+ """
+ configuration of all the buttons, some buttons just need to be toggled
+ meaning that they need just to be clicked and the function associated
+ to the button is called and executed. Other buttons are checkable
+ meaning that until the user has not finished to use the function
+ connected to the button, this button stays active (or Checked)
+ """
+
+ # hide / show cnn buttons
+ parent.button_hide_show.setCheckable(True)
+ parent.button_hide_show.setMaximumWidth(150)
+ parent.button_hide_show.clicked.connect(parent.ShowHideCNNbuttons)
+ parent.button_hide_show.setStatusTip('Press to hide and show neural network buttons')
+
+ # ADD REGION
+ parent.button_add_region.setCheckable(True)
+ parent.button_add_region.setMaximumWidth(150)
+ parent.button_add_region.clicked.connect(parent.clickmethod)
+ parent.button_add_region.setShortcut("R")
+ parent.button_add_region.setToolTip("Use R Key for shortcut")
+ parent.button_add_region.setStatusTip('The first left click sets the value for the next clicks, then draw polygons')
+ # NEW CELL
+ parent.button_newcell.setCheckable(True)
+ parent.button_newcell.setMaximumWidth(150)
+ parent.button_newcell.setShortcut("N")
+ parent.button_newcell.setToolTip("Use N Key for shortcut")
+ parent.button_newcell.clicked.connect(parent.ClickNewCell)
+ parent.button_newcell.setStatusTip('Use the left click to produce a polygon with a new cell value')
-# configuration of all the buttons, some buttons just need to be toggled
-# meaning that they need just to be clicked and the function associated
-# to the button is called and executed. Other buttons are checkable
-# meaning that until the user has not finished to use the function
-# connected to the button, this button stays active (or Checked)
+ # NEXT FRAME (TIME AXIS)
+ parent.button_nextframe.toggle()
+ parent.button_nextframe.pressed.connect(parent.ChangeNextFrame)
+ parent.button_nextframe.setToolTip("Use right arrow key for shortcut")
+ parent.button_nextframe.setMaximumWidth(150)
+ parent.button_nextframe.setShortcut(Qt.Key_Right)
+ # if there is only one picture than this button is disabled
+ if np.all(parent.nextframe == 0):
+ parent.button_nextframe.setEnabled(False)
-# hide / show cnn buttons
- parent.button_hide_show.setCheckable(True)
- parent.button_hide_show.setMaximumWidth(150)
- parent.button_hide_show.clicked.connect(parent.ShowHideCNNbuttons)
- # parent.button_hide_show.setShortcut("R")
- # parent.button_hide_show.setToolTip("Use R Key for shortcut")
- parent.button_hide_show.setStatusTip('Press to hide and show neural network buttons')
-
-
+ # PREVIOUS FRAME (TIME AXIS)
+ parent.button_previousframe.setEnabled(False)
+ parent.button_previousframe.toggle()
+ parent.button_previousframe.pressed.connect(parent.ChangePreviousFrame)
+ parent.button_previousframe.setToolTip("Use left arrow key for shortcut")
+ parent.button_previousframe.setMaximumWidth(150)
+ parent.button_previousframe.setShortcut(Qt.Key_Left)
+ parent.button_previousframe.move(100,100)
+
+ # ZOOM
+ parent.button_zoom = QPushButton()
+ parent.button_zoom.clicked.connect(parent.ZoomTlbar)
+ parent.button_zoom.setIcon(QtGui.QIcon('./icons/ZoomIcon.png'))
+ parent.button_zoom.setMaximumWidth(30)
+ parent.button_zoom.setMaximumHeight(30)
+ parent.button_zoom.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
+ parent.button_zoom.setCheckable(True)
+ parent.button_zoom.setShortcut("Z")
+ parent.button_zoom.setToolTip("Use Z Key for shortcut")
+ parent.buttonlist.append(parent.button_zoom)
-# ADD REGION
- parent.button_add_region.setCheckable(True)
- parent.button_add_region.setMaximumWidth(150)
- parent.button_add_region.clicked.connect(parent.clickmethod)
-# the connect function calls clickmethod when the button is clicked.
- parent.button_add_region.setShortcut("R")
- parent.button_add_region.setToolTip("Use R Key for shortcut")
- parent.button_add_region.setStatusTip('The first left click sets the value for the next clicks, then draw polygons')
-
-
-# NEW CELL
- parent.button_newcell.setCheckable(True)
- parent.button_newcell.setMaximumWidth(150)
- parent.button_newcell.setShortcut("N")
- parent.button_newcell.setToolTip("Use N Key for shortcut")
-# when the button is pushed the ClickNewCell method is called.
- parent.button_newcell.clicked.connect(parent.ClickNewCell)
- parent.button_newcell.setStatusTip('Use the left click to produce a polygon with a new cell value')
-
-# NEXT FRAME (TIME AXIS)
-# this button is used to navigate in the time axis, to show the t+1 frame
-# parent.button_nextframe.setCheckable(True)
- parent.button_nextframe.toggle()
- parent.button_nextframe.pressed.connect(parent.ChangeNextFrame)
-# parent.button_nextframe.released.connect(parent.test2)
- parent.button_nextframe.setToolTip("Use right arrow key for shortcut")
- parent.button_nextframe.setMaximumWidth(150)
- parent.button_nextframe.setShortcut(Qt.Key_Right)
- # if there is only one picture than this button is disabled
- if np.all(parent.nextframe == 0):
- parent.button_nextframe.setEnabled(False)
-# parent.buttonlist.append(parent.button_nextframe)
-# parent.button_nextframe.setShortcutAutoRepeat(False)
-
-
-# PREVIOUS FRAME (TIME AXIS)
-
-# this button is used to load the previous frame in the time axis
-# parent.button_previousframe.setCheckable(True)
- parent.button_previousframe.setEnabled(False)
- parent.button_previousframe.toggle()
- parent.button_previousframe.pressed.connect(parent.ChangePreviousFrame)
- parent.button_previousframe.setToolTip("Use left arrow key for shortcut")
- parent.button_previousframe.setMaximumWidth(150)
- parent.button_previousframe.setShortcut(Qt.Key_Left)
- parent.button_previousframe.move(100,100)
-
-
-
-# Initializing the buttons appearing in the navigation toolbar of the
-# matplotlib library and connect them to the original functions already
-# implemented in the navigation toolbar
-
-# ZOOM
- parent.button_zoom = QPushButton()
- parent.button_zoom.clicked.connect(parent.ZoomTlbar)
- parent.button_zoom.setIcon(QtGui.QIcon('./icons/ZoomIcon.png'))
- parent.button_zoom.setMaximumWidth(30)
- parent.button_zoom.setMaximumHeight(30)
- parent.button_zoom.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
- parent.button_zoom.setCheckable(True)
- parent.button_zoom.setShortcut("Z")
- parent.button_zoom.setToolTip("Use Z Key for shortcut")
- parent.buttonlist.append(parent.button_zoom)
-
-# HOME
- parent.button_home = QPushButton()
- parent.button_home.clicked.connect(parent.HomeTlbar)
- parent.button_home.setIcon(QtGui.QIcon('./icons/HomeIcon.png'))
- parent.button_home.setMaximumWidth(30)
- parent.button_home.setMaximumHeight(30)
- parent.button_home.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
- parent.button_home.setShortcut("H")
- parent.button_home.setToolTip("Use H Key for shortcut")
- parent.buttonlist.append(parent.button_home)
-
-# PREVIOUS SCALE (ZOOM SCALE)
- parent.button_back = QPushButton()
- parent.button_back.clicked.connect(parent.BackTlbar)
- parent.button_back.setIcon(QtGui.QIcon('./icons/LeftArrowIcon.png'))
- parent.button_back.setMaximumWidth(30)
- parent.button_back.setMaximumHeight(30)
- parent.button_back.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
- parent.buttonlist.append(parent.button_back)
-
-
-# NEXT SCALE (ZOOM SCALE)
- parent.button_forward = QPushButton()
- parent.button_forward.clicked.connect(parent.ForwardTlbar)
- parent.button_forward.setIcon(QtGui.QIcon('./icons/RightArrowIcon.png'))
- parent.button_forward.setMaximumWidth(30)
- parent.button_forward.setMaximumHeight(30)
- parent.button_forward.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
- parent.buttonlist.append(parent.button_forward)
-
-# PAN
- parent.button_pan = QPushButton()
- parent.button_pan.clicked.connect(parent.PanTlbar)
- parent.button_pan.setIcon(QtGui.QIcon('./icons/MoveArrowsIcon.png'))
- parent.button_pan.setMaximumWidth(30)
- parent.button_pan.setMaximumHeight(30)
- parent.button_pan.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
- parent.button_pan.setCheckable(True)
- parent.button_pan.setShortcut("P")
- parent.button_pan.setToolTip("Use P Key for shortcut")
- parent.buttonlist.append(parent.button_pan)
-
-
-# SAVE
-# this button is used to save the current mask
- parent.button_savemask.toggle()
- parent.button_savemask.setEnabled(True)
- parent.button_savemask.clicked.connect(parent.ButtonSaveMask)
- parent.button_savemask.setToolTip("Use S Key for shortcut")
- parent.button_savemask.setMaximumWidth(150)
- parent.button_savemask.setShortcut("S")
- parent.button_savemask.setStatusTip('Save the mask')
-
-
-# BRUSH
-# parent.button_drawmouse.setEnabled(True)
- parent.button_drawmouse.setCheckable(True)
- parent.button_drawmouse.clicked.connect(parent.MouseDraw)
- parent.button_drawmouse.setToolTip("Use B Key for shortcut")
- parent.button_drawmouse.setShortcut("B")
- parent.button_drawmouse.setMaximumWidth(150)
- parent.button_drawmouse.setStatusTip('Right click to select cell value and then left click and drag to draw')
-
-
-# ERASER
- parent.button_eraser.setCheckable(True)
- parent.button_eraser.clicked.connect(parent.MouseDraw)
- parent.button_eraser.setToolTip("Use E Key for shortcut")
- parent.button_eraser.setShortcut("E")
- parent.button_eraser.setMaximumWidth(150)
- parent.button_eraser.setStatusTip('Right click and drag to set values to 0')
-
-# EXCHANGE CELL VALUES
- parent.button_exval.toggle()
- parent.button_exval.setEnabled(True)
- parent.button_exval.clicked.connect(parent.DialogBoxECV)
- parent.button_exval.setMaximumWidth(150)
- parent.button_exval.setStatusTip('Exchange values between two cells')
-
-# CHANGE CELL VALUE
- parent.button_changecellvalue.setCheckable(True)
- parent.button_changecellvalue.setEnabled(True)
- parent.button_changecellvalue.clicked.connect(parent.ChangeOneValue)
- parent.button_changecellvalue.setMaximumWidth(150)
- parent.button_changecellvalue.setStatusTip('Change value of one cell')
- parent.button_changecellvalue.setToolTip('Use left click to select one cell and enter a new value')
-
-
-
-# THRESHOLD THE PREDICTION CHECKBOX
- parent.button_threshold.setEnabled(False)
- parent.button_threshold.stateChanged.connect(parent.ThresholdBoxCheck)
-
-# TEXT BOX FOR ENTERING THRESHOLD VALUE
- parent.button_SetThreshold = QLineEdit()
- parent.button_SetThreshold.setPlaceholderText('Enter a threshold value')
- parent.button_SetThreshold.setValidator(QtGui.QDoubleValidator())
- parent.button_SetThreshold.setMaximumWidth(150)
- parent.button_SetThreshold.returnPressed.connect(parent.ThresholdPrediction)
- parent.button_SetThreshold.setEnabled(False)
-
-
+ # HOME
+ parent.button_home = QPushButton()
+ parent.button_home.clicked.connect(parent.HomeTlbar)
+ parent.button_home.setIcon(QtGui.QIcon('./icons/HomeIcon.png'))
+ parent.button_home.setMaximumWidth(30)
+ parent.button_home.setMaximumHeight(30)
+ parent.button_home.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
+ parent.button_home.setShortcut("H")
+ parent.button_home.setToolTip("Use H Key for shortcut")
+ parent.buttonlist.append(parent.button_home)
+
+ # PREVIOUS SCALE (ZOOM SCALE)
+ parent.button_back = QPushButton()
+ parent.button_back.clicked.connect(parent.BackTlbar)
+ parent.button_back.setIcon(QtGui.QIcon('./icons/LeftArrowIcon.png'))
+ parent.button_back.setMaximumWidth(30)
+ parent.button_back.setMaximumHeight(30)
+ parent.button_back.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
+ parent.buttonlist.append(parent.button_back)
+
+ # NEXT SCALE (ZOOM SCALE)
+ parent.button_forward = QPushButton()
+ parent.button_forward.clicked.connect(parent.ForwardTlbar)
+ parent.button_forward.setIcon(QtGui.QIcon('./icons/RightArrowIcon.png'))
+ parent.button_forward.setMaximumWidth(30)
+ parent.button_forward.setMaximumHeight(30)
+ parent.button_forward.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
+ parent.buttonlist.append(parent.button_forward)
+
+ # PAN
+ parent.button_pan = QPushButton()
+ parent.button_pan.clicked.connect(parent.PanTlbar)
+ parent.button_pan.setIcon(QtGui.QIcon('./icons/MoveArrowsIcon.png'))
+ parent.button_pan.setMaximumWidth(30)
+ parent.button_pan.setMaximumHeight(30)
+ parent.button_pan.setStyleSheet("border: 0px" "QPushButton:hover { background-color: blue }" )
+ parent.button_pan.setCheckable(True)
+ parent.button_pan.setShortcut("P")
+ parent.button_pan.setToolTip("Use P Key for shortcut")
+ parent.buttonlist.append(parent.button_pan)
+
+ # SAVE
+ parent.button_savemask.toggle()
+ parent.button_savemask.setEnabled(True)
+ parent.button_savemask.clicked.connect(parent.ButtonSaveMask)
+ parent.button_savemask.setToolTip("Use S Key for shortcut")
+ parent.button_savemask.setMaximumWidth(150)
+ parent.button_savemask.setShortcut("S")
+ parent.button_savemask.setStatusTip('Save the mask')
-# SAVE BUTTON FOR THE THRESHOLDED PREDICTION
- parent.button_savethresholdmask = QPushButton('Save Threshold')
- parent.button_savethresholdmask.toggle()
- parent.button_savethresholdmask.setEnabled(False)
- parent.button_savethresholdmask.clicked.connect(parent.ButtonSaveThresholdMask)
- parent.button_savethresholdmask.setMaximumWidth(150)
- parent.button_savethresholdmask.setStatusTip('Save the thresholded prediction')
-
-
-# SEGMENT THE OUTPUT OF THE THRESHOLD
- parent.button_segment.setEnabled(False)
- parent.button_segment.stateChanged.connect(parent.SegmentBoxCheck)
-
-# TEXT BOX FOR THE PARAMETERS OF THE SEGMENTATION
- parent.button_SetSegmentation = QLineEdit()
- parent.button_SetSegmentation.setPlaceholderText('Enter param for seg')
- parent.button_SetSegmentation.setValidator(QtGui.QIntValidator())
- parent.button_SetSegmentation.setMaximumWidth(80)
- parent.button_SetSegmentation.returnPressed.connect(parent.SegmentThresholdedPredMask)
- parent.button_SetSegmentation.setEnabled(False)
- parent.button_SetSegmentation.setText('10')
-
+ # BRUSH
+ parent.button_drawmouse.setCheckable(True)
+ parent.button_drawmouse.clicked.connect(parent.MouseDraw)
+ parent.button_drawmouse.setToolTip("Use B Key for shortcut")
+ parent.button_drawmouse.setShortcut("B")
+ parent.button_drawmouse.setMaximumWidth(150)
+ parent.button_drawmouse.setStatusTip('Right click to select cell value and then left click and drag to draw')
+
+ # ERASER
+ parent.button_eraser.setCheckable(True)
+ parent.button_eraser.clicked.connect(parent.MouseDraw)
+ parent.button_eraser.setToolTip("Use E Key for shortcut")
+ parent.button_eraser.setShortcut("E")
+ parent.button_eraser.setMaximumWidth(150)
+ parent.button_eraser.setStatusTip('Right click and drag to set values to 0')
+
+ # EXCHANGE CELL VALUES
+ parent.button_exval.toggle()
+ parent.button_exval.setEnabled(True)
+ parent.button_exval.clicked.connect(parent.DialogBoxECV)
+ parent.button_exval.setMaximumWidth(150)
+ parent.button_exval.setStatusTip('Exchange values between two cells')
-# SAVE BUTTON FOR THE SEGMENTATION OF THE THRESHOLDED PREDICTION
- parent.button_savesegmask = QPushButton('Save Seg')
- parent.button_savesegmask.toggle()
- parent.button_savesegmask.setEnabled(False)
- parent.button_savesegmask.clicked.connect(parent.ButtonSaveSegMask)
- parent.button_savesegmask.setMaximumWidth(150)
- parent.button_savesegmask.setStatusTip('Save the segmented thresholded prediction')
-
-
-
-# MAKE THE CELL CORRESPONDANCE
- parent.button_cellcorespondance.setEnabled(False)
- parent.button_cellcorespondance.setCheckable(True)
- parent.button_cellcorespondance.clicked.connect(parent.CellCorrespActivation)
- parent.button_cellcorespondance.setMaximumWidth(150)
- parent.button_cellcorespondance.setStatusTip('Do the cell correspondance with the previous time frame')
-
-
-# EXTRACT FLUORESCENCE IN DIFFERENT CHANNELS
-
- parent.button_extractfluorescence.setEnabled(False)
- parent.button_extractfluorescence.toggle()
- parent.button_extractfluorescence.clicked.connect(parent.ButtonFluo)
- parent.button_extractfluorescence.setMaximumWidth(150)
- parent.button_extractfluorescence.setStatusTip('Extract the total intensity, area and variance of the cells in the different channels')
-
-
-# SHOW THE VALUES OF THE CELLS
-# parent.button_showval.checkStateSet(False)
- parent.button_showval.stateChanged.connect(parent.m.ShowCellNumbersCurr)
- parent.button_showval.stateChanged.connect(parent.m.ShowCellNumbersPrev)
- parent.button_showval.stateChanged.connect(parent.m.ShowCellNumbersNext)
- parent.button_showval.setShortcut('V')
- parent.button_showval.setToolTip("Use V Key for shortcut")
-
-
-# HIDE/SHOW THE MASK
- parent.button_hidemask.stateChanged.connect(parent.m.HideMask)
-
-
-# CHANGE TIME INDEX
- parent.button_timeindex = QLineEdit()
- parent.button_timeindex.setPlaceholderText('Time index 0-{}'.format(parent.reader.sizet-1))
- parent.button_timeindex.setValidator(QtGui.QIntValidator(0,int(parent.reader.sizet-1)))
- parent.button_timeindex.returnPressed.connect(parent.ChangeTimeFrame)
- parent.button_timeindex.setMaximumWidth(150)
-
- parent.buttonlist.append(parent.button_timeindex)
-
-
-
-# FIELDS OF VIEW BUTTON
-# Create a widget that displays the lists of different Fields of view.
- parent.button_fov = QComboBox()
-# create a list of different FOV which will be dispalyed in the widget.
- list_fov = []
- for i in range(0, parent.reader.Npos):
- list_fov.append("Field of View " + str(i+1))
- parent.button_fov.addItems(list_fov)
- parent.button_fov.setMaximumWidth(150)
- parent.buttonlist.append(parent.button_fov)
-# connects the selection of one option in the ComboBox to the selectFOV
-# function.
- parent.button_fov.activated.connect(parent.SelectFov)
-
-
-
-# CHANGE CHANNEL BUTTON
-# Create a widget that displays a list of the different channels.
-# in order to switch between them
- parent.button_channel = QComboBox()
- parent.button_channel.addItems(parent.reader.channel_names)
- parent.button_channel.setMaximumWidth(150)
- parent.buttonlist.append(parent.button_channel)
-# connects the selection of one option in the ComboBox to the selectFOV
-# function.
- parent.button_channel.activated.connect(parent.SelectChannel)
-
-
-
-
-
-
-# NEURAL NETWORK BUTTON
- parent.button_cnn.setCheckable(True)
- parent.button_cnn.pressed.connect(parent.LaunchBatchPrediction)
- parent.button_cnn.setToolTip("Launches the CNN on a range of images")
- parent.button_cnn.setMaximumWidth(150)
- parent.EnableCNNButtons()
+ # CHANGE CELL VALUE
+ parent.button_changecellvalue.setCheckable(True)
+ parent.button_changecellvalue.setEnabled(True)
+ parent.button_changecellvalue.clicked.connect(parent.ChangeOneValue)
+ parent.button_changecellvalue.setMaximumWidth(150)
+ parent.button_changecellvalue.setStatusTip('Change value of one cell')
+ parent.button_changecellvalue.setToolTip('Use left click to select one cell and enter a new value')
+
+ # THRESHOLD THE PREDICTION CHECKBOX
+ parent.button_threshold.setEnabled(False)
+ parent.button_threshold.stateChanged.connect(parent.ThresholdBoxCheck)
+
+ # TEXT BOX FOR ENTERING THRESHOLD VALUE
+ parent.button_SetThreshold = QLineEdit()
+ parent.button_SetThreshold.setPlaceholderText('Enter a threshold value')
+ parent.button_SetThreshold.setValidator(QtGui.QDoubleValidator())
+ parent.button_SetThreshold.setMaximumWidth(150)
+ parent.button_SetThreshold.returnPressed.connect(parent.ThresholdPrediction)
+ parent.button_SetThreshold.setEnabled(False)
+
+ # SAVE BUTTON FOR THE THRESHOLDED PREDICTION
+ parent.button_savethresholdmask = QPushButton('Save Threshold')
+ parent.button_savethresholdmask.toggle()
+ parent.button_savethresholdmask.setEnabled(False)
+ parent.button_savethresholdmask.clicked.connect(parent.ButtonSaveThresholdMask)
+ parent.button_savethresholdmask.setMaximumWidth(150)
+ parent.button_savethresholdmask.setStatusTip('Save the thresholded prediction')
+
+ # SEGMENT THE OUTPUT OF THE THRESHOLD
+ parent.button_segment.setEnabled(False)
+ parent.button_segment.stateChanged.connect(parent.SegmentBoxCheck)
+
+ # TEXT BOX FOR THE PARAMETERS OF THE SEGMENTATION
+ parent.button_SetSegmentation = QLineEdit()
+ parent.button_SetSegmentation.setPlaceholderText('Enter param for seg')
+ parent.button_SetSegmentation.setValidator(QtGui.QIntValidator())
+ parent.button_SetSegmentation.setMaximumWidth(80)
+ parent.button_SetSegmentation.returnPressed.connect(parent.SegmentThresholdedPredMask)
+ parent.button_SetSegmentation.setEnabled(False)
+ parent.button_SetSegmentation.setText('10')
+
+ # SAVE BUTTON FOR THE SEGMENTATION OF THE THRESHOLDED PREDICTION
+ parent.button_savesegmask = QPushButton('Save Seg')
+ parent.button_savesegmask.toggle()
+ parent.button_savesegmask.setEnabled(False)
+ parent.button_savesegmask.clicked.connect(parent.ButtonSaveSegMask)
+ parent.button_savesegmask.setMaximumWidth(150)
+ parent.button_savesegmask.setStatusTip('Save the segmented thresholded prediction')
+
+ # MAKE THE CELL CORRESPONDANCE
+ parent.button_cellcorespondance.setEnabled(False)
+ parent.button_cellcorespondance.setCheckable(True)
+ parent.button_cellcorespondance.clicked.connect(parent.CellCorrespActivation)
+ parent.button_cellcorespondance.setMaximumWidth(150)
+ parent.button_cellcorespondance.setStatusTip('Do the cell correspondance with the previous time frame')
+
+ # EXTRACT FLUORESCENCE IN DIFFERENT CHANNELS
+ parent.button_extractfluorescence.setEnabled(False)
+ parent.button_extractfluorescence.toggle()
+ parent.button_extractfluorescence.clicked.connect(parent.ButtonFluo)
+ parent.button_extractfluorescence.setMaximumWidth(150)
+ parent.button_extractfluorescence.setStatusTip('Extract the total intensity, area and variance of the cells in the different channels')
+
+ # SHOW THE VALUES OF THE CELLS
+ parent.button_showval.stateChanged.connect(parent.m.ShowCellNumbersCurr)
+ parent.button_showval.stateChanged.connect(parent.m.ShowCellNumbersPrev)
+ parent.button_showval.stateChanged.connect(parent.m.ShowCellNumbersNext)
+ parent.button_showval.setShortcut('V')
+ parent.button_showval.setToolTip("Use V Key for shortcut")
+
+ # HIDE/SHOW THE MASK
+ parent.button_hidemask.stateChanged.connect(parent.m.HideMask)
+
+ # CHANGE TIME INDEX
+ parent.button_timeindex = QLineEdit()
+ parent.button_timeindex.setPlaceholderText('Time index 0-{}'.format(parent.reader.sizet-1))
+ parent.button_timeindex.setValidator(QtGui.QIntValidator(0,int(parent.reader.sizet-1)))
+ parent.button_timeindex.returnPressed.connect(parent.ChangeTimeFrame)
+ parent.button_timeindex.setMaximumWidth(150)
+ parent.buttonlist.append(parent.button_timeindex)
+
+ # FIELDS OF VIEW BUTTON
+ parent.button_fov = QComboBox()
+ list_fov = []
+ for i in range(0, parent.reader.Npos):
+ list_fov.append("Field of View " + str(i+1))
+ parent.button_fov.addItems(list_fov)
+ parent.button_fov.setMaximumWidth(150)
+ parent.buttonlist.append(parent.button_fov)
+ parent.button_fov.activated.connect(parent.SelectFov)
+
+ # CHANGE CHANNEL BUTTON
+ parent.button_channel = QComboBox()
+ parent.button_channel.addItems(parent.reader.channel_names)
+ parent.button_channel.setMaximumWidth(150)
+ parent.buttonlist.append(parent.button_channel)
+ parent.button_channel.activated.connect(parent.SelectChannel)
+
+ # NEURAL NETWORK BUTTON
+ parent.button_cnn.setCheckable(True)
+ parent.button_cnn.pressed.connect(parent.LaunchBatchPrediction)
+ parent.button_cnn.setToolTip("Launches the CNN on a range of images")
+ parent.button_cnn.setMaximumWidth(150)
+ parent.EnableCNNButtons()