From 1c1de90f987c47a296a77e40ef7043e86eabae42 Mon Sep 17 00:00:00 2001
From: mattminder <myfiles@Mattus-MacBook-Pro.local>
Date: Sun, 17 May 2020 11:03:44 +0200
Subject: [PATCH] bugfix: extracting when only one image
---
GUI_main.py | 7 ++++++-
1 file changed, 6 insertions(+), 1 deletion(-)
diff --git a/GUI_main.py b/GUI_main.py
index 8f56d0a..90ae286 100644
--- a/GUI_main.py
+++ b/GUI_main.py
@@ -479,7 +479,7 @@ class App(QMainWindow):
self.WriteStatusBar('Extracting ...')
# Get last image with mask
- for time_index in range(self.reader.sizet, 0, -1):
+ for time_index in range(self.reader.sizet-1, -1, -1):
# Test if time has a mask
file = h5py.File(self.reader.hdfpath, 'r+')
time_exist = self.reader.TestTimeExist(time_index, self.FOVindex, file)
@@ -496,6 +496,11 @@ class App(QMainWindow):
# Break if mask is non-empty
if mask.sum()>0:
break
+
+ if time_index==0:
+ QMessageBox(self, 'Error', 'No mask found')
+ self.Enable(self.button_extractfluorescence)
+ self.ClearStatusBar()
# Launch dialog with last image
dlg = extr.Extract(image, mask, self.reader.channel_names)
--
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